Query 024712
Match_columns 263
No_of_seqs 398 out of 1941
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 13:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vtx_A MAMA; tetratricopeptide 100.0 3.7E-29 1.3E-33 184.7 22.0 178 62-243 3-180 (184)
2 2pl2_A Hypothetical conserved 100.0 9.6E-29 3.3E-33 187.5 23.0 185 61-250 2-197 (217)
3 2pl2_A Hypothetical conserved 100.0 1E-26 3.5E-31 176.3 22.3 184 36-230 18-212 (217)
4 2h6f_A Protein farnesyltransfe 100.0 5.7E-27 1.9E-31 191.6 21.8 191 56-250 89-286 (382)
5 4gyw_A UDP-N-acetylglucosamine 100.0 1.2E-26 4.1E-31 203.2 21.5 174 59-235 4-177 (723)
6 4i17_A Hypothetical protein; T 99.9 6.1E-26 2.1E-30 173.1 21.9 180 62-245 5-221 (228)
7 2h6f_A Protein farnesyltransfe 99.9 1.4E-25 4.9E-30 183.3 23.5 215 23-250 98-321 (382)
8 1w3b_A UDP-N-acetylglucosamine 99.9 1E-24 3.5E-29 179.1 28.1 186 60-249 165-350 (388)
9 3hym_B Cell division cycle pro 99.9 3.3E-24 1.1E-28 171.6 30.1 186 59-248 120-314 (330)
10 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-24 5.3E-29 178.0 27.6 187 60-250 131-317 (388)
11 4abn_A Tetratricopeptide repea 99.9 6.5E-25 2.2E-29 185.0 23.7 189 57-250 95-304 (474)
12 2q7f_A YRRB protein; TPR, prot 99.9 1.4E-24 4.9E-29 166.5 23.3 200 37-247 37-236 (243)
13 4eqf_A PEX5-related protein; a 99.9 4.5E-25 1.5E-29 179.7 20.3 203 37-250 79-293 (365)
14 3hym_B Cell division cycle pro 99.9 6.8E-24 2.3E-28 169.8 25.9 224 23-250 40-282 (330)
15 2vq2_A PILW, putative fimbrial 99.9 9.1E-24 3.1E-28 159.9 24.2 185 60-248 4-192 (225)
16 3uq3_A Heat shock protein STI1 99.9 3.8E-24 1.3E-28 165.4 21.6 199 36-246 18-255 (258)
17 1fch_A Peroxisomal targeting s 99.9 2.2E-23 7.7E-28 169.5 27.1 204 36-250 77-342 (368)
18 4eqf_A PEX5-related protein; a 99.9 2.4E-24 8.2E-29 175.4 21.2 225 23-250 83-339 (365)
19 2ho1_A Type 4 fimbrial biogene 99.9 1.6E-23 5.6E-28 161.7 24.1 188 59-250 31-221 (252)
20 3uq3_A Heat shock protein STI1 99.9 6.9E-24 2.4E-28 163.9 21.3 185 61-250 2-219 (258)
21 2ho1_A Type 4 fimbrial biogene 99.9 4.9E-23 1.7E-27 159.0 25.9 194 36-240 50-245 (252)
22 3qky_A Outer membrane assembly 99.9 8.5E-24 2.9E-28 164.6 20.2 176 57-235 8-227 (261)
23 3ieg_A DNAJ homolog subfamily 99.9 3.9E-22 1.3E-26 161.1 30.6 186 60-249 150-351 (359)
24 2q7f_A YRRB protein; TPR, prot 99.9 9E-24 3.1E-28 162.0 19.6 184 63-250 22-205 (243)
25 3as5_A MAMA; tetratricopeptide 99.9 1.5E-23 5.3E-28 153.8 19.9 171 62-235 6-176 (186)
26 3urz_A Uncharacterized protein 99.9 7.6E-24 2.6E-28 159.5 18.0 168 64-235 4-189 (208)
27 3ieg_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 163.9 25.4 194 36-240 16-224 (359)
28 3u4t_A TPR repeat-containing p 99.9 2.2E-23 7.7E-28 162.7 19.6 181 65-250 4-188 (272)
29 2vq2_A PILW, putative fimbrial 99.9 2.8E-22 9.6E-27 151.7 25.1 194 36-240 21-218 (225)
30 4ga2_A E3 SUMO-protein ligase 99.9 8.3E-25 2.8E-29 156.2 10.3 146 70-215 3-149 (150)
31 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 9E-27 167.5 26.3 185 59-247 172-372 (450)
32 3cv0_A Peroxisome targeting si 99.9 8.3E-23 2.8E-27 163.2 22.3 204 36-250 34-252 (327)
33 3mkr_A Coatomer subunit epsilo 99.9 5.1E-22 1.7E-26 157.0 26.2 185 38-235 80-267 (291)
34 4gyw_A UDP-N-acetylglucosamine 99.9 2.7E-23 9.3E-28 182.1 20.7 154 93-250 4-157 (723)
35 2y4t_A DNAJ homolog subfamily 99.9 1E-22 3.4E-27 170.1 23.2 173 60-235 56-243 (450)
36 1fch_A Peroxisomal targeting s 99.9 2.3E-22 7.8E-27 163.5 24.6 183 64-250 64-297 (368)
37 3cv0_A Peroxisome targeting si 99.9 1.4E-22 4.7E-27 162.0 22.8 225 23-250 39-298 (327)
38 2xpi_A Anaphase-promoting comp 99.9 5.5E-22 1.9E-26 171.4 28.0 183 60-246 403-592 (597)
39 3vtx_A MAMA; tetratricopeptide 99.9 1.6E-22 5.4E-27 149.0 21.0 152 95-250 2-153 (184)
40 2xpi_A Anaphase-promoting comp 99.9 1.3E-21 4.4E-26 169.0 29.7 187 60-250 369-562 (597)
41 2pzi_A Probable serine/threoni 99.9 1.6E-23 5.3E-28 183.8 17.5 183 59-249 389-579 (681)
42 4abn_A Tetratricopeptide repea 99.9 1.4E-22 4.7E-27 170.9 21.5 183 36-229 115-318 (474)
43 3mkr_A Coatomer subunit epsilo 99.9 5.6E-22 1.9E-26 156.8 23.6 182 60-250 61-246 (291)
44 3u4t_A TPR repeat-containing p 99.9 9.9E-22 3.4E-26 153.3 24.5 202 37-247 51-264 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.8E-21 1.3E-25 150.0 26.3 191 38-235 20-247 (275)
46 2yhc_A BAMD, UPF0169 lipoprote 99.9 5E-22 1.7E-26 151.3 20.3 169 64-235 4-216 (225)
47 2gw1_A Mitochondrial precursor 99.9 1.8E-21 6E-26 164.9 24.6 218 22-244 254-489 (514)
48 2r5s_A Uncharacterized protein 99.9 1.9E-22 6.7E-27 147.7 14.6 167 61-231 3-172 (176)
49 4ga2_A E3 SUMO-protein ligase 99.9 3.7E-23 1.3E-27 147.6 10.1 136 103-242 2-138 (150)
50 4gco_A Protein STI-1; structur 99.9 3.6E-22 1.2E-26 138.1 14.5 117 93-209 8-124 (126)
51 4i17_A Hypothetical protein; T 99.9 2.4E-21 8.3E-26 147.6 20.5 152 95-250 4-165 (228)
52 2ond_A Cleavage stimulation fa 99.9 6.8E-21 2.3E-25 151.8 22.7 170 60-232 46-232 (308)
53 3qou_A Protein YBBN; thioredox 99.9 2E-21 6.9E-26 153.3 19.1 168 61-231 114-283 (287)
54 3fp2_A TPR repeat-containing p 99.9 1.2E-20 4E-25 160.9 25.0 173 60-235 306-494 (537)
55 2pzi_A Probable serine/threoni 99.9 1.4E-21 4.7E-26 171.5 19.4 196 34-230 402-603 (681)
56 2gw1_A Mitochondrial precursor 99.9 8.8E-22 3E-26 166.8 17.7 186 60-250 267-461 (514)
57 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.4E-26 166.8 18.6 168 64-235 243-410 (537)
58 2vsy_A XCC0866; transferase, g 99.9 3.4E-21 1.2E-25 166.0 19.4 164 77-244 2-168 (568)
59 4gco_A Protein STI-1; structur 99.9 7.2E-21 2.4E-25 131.5 16.3 120 57-176 6-125 (126)
60 2ond_A Cleavage stimulation fa 99.9 6.2E-20 2.1E-24 146.3 24.0 174 59-235 94-273 (308)
61 1qqe_A Vesicular transport pro 99.9 3E-20 1E-24 147.0 20.4 168 65-235 38-231 (292)
62 3gyz_A Chaperone protein IPGC; 99.9 7.5E-22 2.6E-26 140.5 9.6 115 118-235 22-136 (151)
63 3edt_B KLC 2, kinesin light ch 99.9 1.5E-20 5.2E-25 146.8 17.3 170 60-232 39-281 (283)
64 3qky_A Outer membrane assembly 99.9 1.8E-19 6E-24 140.1 21.6 178 34-215 26-247 (261)
65 4g1t_A Interferon-induced prot 99.9 9.9E-19 3.4E-23 146.9 27.5 210 37-250 65-293 (472)
66 3gyz_A Chaperone protein IPGC; 99.9 3.2E-21 1.1E-25 137.2 10.0 116 85-200 23-138 (151)
67 1xnf_A Lipoprotein NLPI; TPR, 99.9 7.1E-21 2.4E-25 148.5 12.7 159 73-235 14-176 (275)
68 4g1t_A Interferon-induced prot 99.8 5.9E-20 2E-24 154.3 19.0 207 23-232 156-401 (472)
69 3nf1_A KLC 1, kinesin light ch 99.8 5E-20 1.7E-24 146.0 16.9 173 57-232 20-224 (311)
70 3urz_A Uncharacterized protein 99.8 6.1E-20 2.1E-24 138.0 16.2 137 97-234 3-155 (208)
71 1ouv_A Conserved hypothetical 99.8 1.4E-18 4.6E-23 135.9 24.5 175 61-249 35-229 (273)
72 3nf1_A KLC 1, kinesin light ch 99.8 4.6E-20 1.6E-24 146.2 15.9 197 36-235 40-310 (311)
73 3as5_A MAMA; tetratricopeptide 99.8 3.7E-19 1.3E-23 130.2 19.6 159 36-201 21-179 (186)
74 3dss_A Geranylgeranyl transfer 99.8 4.4E-18 1.5E-22 135.1 26.4 216 25-249 33-283 (331)
75 1ouv_A Conserved hypothetical 99.8 8.5E-18 2.9E-22 131.3 27.3 186 36-242 55-260 (273)
76 2vgx_A Chaperone SYCD; alterna 99.8 4.7E-20 1.6E-24 131.1 11.5 116 86-201 9-124 (148)
77 3dra_A Protein farnesyltransfe 99.8 8.5E-18 2.9E-22 132.7 25.5 214 23-248 34-268 (306)
78 1p5q_A FKBP52, FK506-binding p 99.8 2.7E-20 9.1E-25 150.1 10.4 154 76-232 125-294 (336)
79 2fo7_A Synthetic consensus TPR 99.8 1.6E-18 5.5E-23 120.0 18.2 132 100-234 3-134 (136)
80 1qqe_A Vesicular transport pro 99.8 2E-19 6.9E-24 142.2 15.3 181 62-244 75-280 (292)
81 2vgx_A Chaperone SYCD; alterna 99.8 1.2E-19 4E-24 129.0 12.2 115 118-235 7-121 (148)
82 2fo7_A Synthetic consensus TPR 99.8 3.8E-18 1.3E-22 118.2 19.2 135 65-199 2-136 (136)
83 2xcb_A PCRH, regulatory protei 99.8 1.3E-19 4.5E-24 127.8 10.7 112 89-200 9-120 (142)
84 2vsy_A XCC0866; transferase, g 99.8 1.6E-18 5.6E-23 149.2 18.7 150 58-207 17-169 (568)
85 3upv_A Heat shock protein STI1 99.8 2.6E-18 8.8E-23 118.5 15.4 115 97-211 3-123 (126)
86 2r5s_A Uncharacterized protein 99.8 7.4E-19 2.5E-23 128.5 12.9 153 94-250 2-156 (176)
87 2e2e_A Formate-dependent nitri 99.8 1.9E-18 6.5E-23 126.3 14.7 129 75-203 21-152 (177)
88 2xcb_A PCRH, regulatory protei 99.8 9E-19 3.1E-23 123.5 12.4 114 119-235 5-118 (142)
89 3ulq_A Response regulator aspa 99.8 1.8E-18 6.3E-23 141.7 15.9 165 67-234 106-295 (383)
90 3qou_A Protein YBBN; thioredox 99.8 5.8E-18 2E-22 133.5 18.0 156 92-250 111-267 (287)
91 4a1s_A PINS, partner of inscut 99.8 1.7E-18 5.7E-23 142.9 15.4 172 61-235 45-255 (411)
92 2ooe_A Cleavage stimulation fa 99.8 1.2E-17 4E-22 142.7 21.1 173 60-235 268-457 (530)
93 3u3w_A Transcriptional activat 99.8 3.1E-17 1.1E-21 129.6 22.0 169 63-234 74-268 (293)
94 2c2l_A CHIP, carboxy terminus 99.8 3E-18 1E-22 134.7 16.0 167 61-232 1-199 (281)
95 1hh8_A P67PHOX, NCF-2, neutrop 99.8 2.2E-17 7.4E-22 124.1 19.8 132 65-199 7-154 (213)
96 1hh8_A P67PHOX, NCF-2, neutrop 99.8 9.4E-18 3.2E-22 126.1 17.7 131 99-235 7-153 (213)
97 2qfc_A PLCR protein; TPR, HTH, 99.8 6.4E-17 2.2E-21 127.8 23.2 170 62-234 73-268 (293)
98 2fbn_A 70 kDa peptidylprolyl i 99.8 4.2E-19 1.4E-23 132.3 10.0 155 74-231 14-185 (198)
99 3edt_B KLC 2, kinesin light ch 99.8 1.3E-18 4.5E-23 135.7 13.3 155 75-232 12-198 (283)
100 3dra_A Protein farnesyltransfe 99.8 5.1E-17 1.8E-21 128.2 21.9 194 38-242 84-297 (306)
101 2yhc_A BAMD, UPF0169 lipoprote 99.8 4E-17 1.4E-21 124.1 20.5 162 35-200 16-218 (225)
102 4a1s_A PINS, partner of inscut 99.8 2.1E-18 7.2E-23 142.3 14.0 189 36-234 61-294 (411)
103 3sf4_A G-protein-signaling mod 99.8 2.1E-18 7.2E-23 141.7 13.9 166 65-233 48-257 (406)
104 1a17_A Serine/threonine protei 99.8 2E-17 6.8E-22 119.1 17.4 130 99-231 14-145 (166)
105 1a17_A Serine/threonine protei 99.8 4.7E-17 1.6E-21 117.1 19.0 134 62-195 11-146 (166)
106 2lni_A Stress-induced-phosphop 99.8 1.1E-17 3.9E-22 115.8 14.9 118 97-214 15-132 (133)
107 2ifu_A Gamma-SNAP; membrane fu 99.8 3.8E-18 1.3E-22 135.9 14.0 168 63-235 35-226 (307)
108 3ulq_A Response regulator aspa 99.8 1.4E-17 4.9E-22 136.4 17.8 195 34-229 114-332 (383)
109 3rjv_A Putative SEL1 repeat pr 99.8 2.6E-17 8.8E-22 124.0 17.7 167 62-234 16-199 (212)
110 2e2e_A Formate-dependent nitri 99.8 1E-17 3.5E-22 122.4 15.0 125 108-235 20-147 (177)
111 3upv_A Heat shock protein STI1 99.8 3.1E-17 1.1E-21 113.0 16.5 118 61-178 1-124 (126)
112 2vyi_A SGTA protein; chaperone 99.8 1.2E-17 4.1E-22 115.1 14.3 121 95-215 9-129 (131)
113 3sf4_A G-protein-signaling mod 99.8 8.7E-18 3E-22 137.9 16.0 171 62-235 7-219 (406)
114 3sz7_A HSC70 cochaperone (SGT) 99.8 1.4E-17 4.9E-22 120.2 14.9 112 96-207 9-120 (164)
115 3ro2_A PINS homolog, G-protein 99.8 5.6E-18 1.9E-22 135.2 13.6 165 65-232 44-252 (338)
116 3ro2_A PINS homolog, G-protein 99.8 1.8E-17 6.1E-22 132.3 16.3 169 64-235 5-215 (338)
117 1dce_A Protein (RAB geranylger 99.8 6.7E-18 2.3E-22 144.7 14.4 200 25-235 32-270 (567)
118 3q7a_A Farnesyltransferase alp 99.8 2.1E-16 7.3E-21 126.0 21.8 187 60-247 50-251 (349)
119 1p5q_A FKBP52, FK506-binding p 99.8 5.1E-17 1.8E-21 130.9 18.5 136 59-194 142-293 (336)
120 2ooe_A Cleavage stimulation fa 99.8 4E-16 1.4E-20 133.2 24.8 174 59-235 316-495 (530)
121 2vyi_A SGTA protein; chaperone 99.8 4.6E-17 1.6E-21 112.1 15.5 125 58-182 6-130 (131)
122 3q15_A PSP28, response regulat 99.8 3.6E-17 1.2E-21 133.9 17.4 167 66-235 103-293 (378)
123 2lni_A Stress-induced-phosphop 99.8 6.1E-17 2.1E-21 112.0 15.4 125 57-181 9-133 (133)
124 3dss_A Geranylgeranyl transfer 99.8 5.3E-16 1.8E-20 123.2 22.4 170 73-243 38-232 (331)
125 4gcn_A Protein STI-1; structur 99.8 3.8E-17 1.3E-21 112.9 14.0 101 98-198 8-115 (127)
126 1dce_A Protein (RAB geranylger 99.8 2.2E-16 7.4E-21 135.3 21.6 174 74-248 38-236 (567)
127 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 1.9E-18 6.4E-23 144.9 8.7 152 77-231 247-414 (457)
128 1na0_A Designed protein CTPR3; 99.7 2E-16 6.9E-21 107.9 17.3 117 98-214 9-125 (125)
129 3sz7_A HSC70 cochaperone (SGT) 99.7 7.9E-17 2.7E-21 116.2 15.8 119 59-177 6-124 (164)
130 3q15_A PSP28, response regulat 99.7 2.4E-16 8.1E-21 129.0 19.9 163 34-197 112-292 (378)
131 3q49_B STIP1 homology and U bo 99.7 7.2E-17 2.5E-21 112.6 14.1 105 94-198 5-109 (137)
132 3q7a_A Farnesyltransferase alp 99.7 1.1E-15 3.6E-20 122.0 22.1 185 23-215 55-257 (349)
133 1hxi_A PEX5, peroxisome target 99.7 8.3E-17 2.8E-21 110.2 13.2 98 102-199 21-118 (121)
134 1elw_A TPR1-domain of HOP; HOP 99.7 4.1E-16 1.4E-20 105.3 16.5 112 98-209 4-115 (118)
135 3q49_B STIP1 homology and U bo 99.7 2E-16 6.9E-21 110.3 15.0 107 126-235 3-109 (137)
136 2xm6_A Protein corresponding t 99.7 6.6E-15 2.2E-19 124.5 27.0 161 63-234 254-434 (490)
137 4gcn_A Protein STI-1; structur 99.7 1.7E-16 5.9E-21 109.6 13.6 101 132-235 8-115 (127)
138 3rjv_A Putative SEL1 repeat pr 99.7 3.1E-16 1.1E-20 118.1 16.1 157 82-250 4-174 (212)
139 2xm6_A Protein corresponding t 99.7 2.6E-14 8.9E-19 120.9 29.2 173 63-249 218-410 (490)
140 3rkv_A Putative peptidylprolyl 99.7 1E-16 3.5E-21 115.4 12.3 116 99-214 12-146 (162)
141 2c2l_A CHIP, carboxy terminus 99.7 1.3E-16 4.4E-21 125.4 13.8 144 95-244 1-175 (281)
142 1na0_A Designed protein CTPR3; 99.7 1.3E-15 4.4E-20 103.9 17.3 118 63-180 8-125 (125)
143 2hr2_A Hypothetical protein; a 99.7 3.7E-17 1.2E-21 115.3 9.3 102 99-200 12-136 (159)
144 3gw4_A Uncharacterized protein 99.7 1.7E-16 5.7E-21 118.1 13.4 159 74-235 2-179 (203)
145 4f3v_A ESX-1 secretion system 99.7 2E-17 6.9E-22 127.9 8.6 199 34-245 17-248 (282)
146 2fbn_A 70 kDa peptidylprolyl i 99.7 4.6E-16 1.6E-20 115.8 15.6 132 62-193 36-184 (198)
147 1hxi_A PEX5, peroxisome target 99.7 2E-16 6.7E-21 108.3 12.5 99 134-235 19-117 (121)
148 2dba_A Smooth muscle cell asso 99.7 6.8E-16 2.3E-20 108.8 15.8 114 96-209 26-142 (148)
149 2hr2_A Hypothetical protein; a 99.7 1.5E-16 5.3E-21 112.1 11.7 112 132-247 11-145 (159)
150 1elw_A TPR1-domain of HOP; HOP 99.7 2E-15 6.9E-20 101.9 16.7 114 63-176 3-116 (118)
151 2xev_A YBGF; tetratricopeptide 99.7 1.6E-15 5.6E-20 104.5 15.3 111 101-211 5-121 (129)
152 1wao_1 Serine/threonine protei 99.7 1.2E-17 4.2E-22 140.6 5.2 134 99-235 7-153 (477)
153 3rkv_A Putative peptidylprolyl 99.7 7E-16 2.4E-20 111.0 13.7 122 62-183 9-149 (162)
154 3e4b_A ALGK; tetratricopeptide 99.7 1.9E-14 6.5E-19 120.5 23.6 173 65-249 177-365 (452)
155 2kck_A TPR repeat; tetratricop 99.7 4.4E-16 1.5E-20 104.2 10.9 105 128-235 2-109 (112)
156 2if4_A ATFKBP42; FKBP-like, al 99.7 5.8E-17 2E-21 130.7 7.7 152 64-235 179-331 (338)
157 2kck_A TPR repeat; tetratricop 99.7 6.4E-16 2.2E-20 103.5 11.6 107 94-200 2-111 (112)
158 2dba_A Smooth muscle cell asso 99.7 3.3E-15 1.1E-19 105.2 15.9 121 58-178 22-145 (148)
159 1elr_A TPR2A-domain of HOP; HO 99.7 1.3E-15 4.3E-20 104.9 13.3 117 97-214 3-126 (131)
160 1wao_1 Serine/threonine protei 99.7 3.2E-17 1.1E-21 138.1 5.9 137 63-199 5-154 (477)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2E-15 6.8E-20 126.5 15.8 134 60-193 264-413 (457)
162 2xev_A YBGF; tetratricopeptide 99.7 6.3E-15 2.2E-19 101.5 15.7 116 66-181 4-125 (129)
163 2ifu_A Gamma-SNAP; membrane fu 99.7 1.1E-15 3.7E-20 121.6 12.6 169 77-249 4-206 (307)
164 3e4b_A ALGK; tetratricopeptide 99.7 5.5E-14 1.9E-18 117.7 23.2 178 63-250 140-330 (452)
165 2if4_A ATFKBP42; FKBP-like, al 99.7 2.6E-16 9E-21 126.8 8.7 103 99-201 231-334 (338)
166 1zu2_A Mitochondrial import re 99.6 1.7E-15 5.9E-20 106.5 11.4 91 111-201 15-126 (158)
167 1elr_A TPR2A-domain of HOP; HO 99.6 5.7E-15 1.9E-19 101.6 13.9 119 62-181 2-127 (131)
168 1hz4_A MALT regulatory protein 99.6 1.4E-14 4.8E-19 118.0 17.8 168 64-234 14-205 (373)
169 1ihg_A Cyclophilin 40; ppiase 99.6 3.4E-15 1.2E-19 121.6 14.0 123 99-224 224-362 (370)
170 3k9i_A BH0479 protein; putativ 99.6 6.1E-16 2.1E-20 105.1 7.6 93 111-203 3-98 (117)
171 1ihg_A Cyclophilin 40; ppiase 99.6 1.4E-14 5E-19 117.9 15.8 125 64-188 223-363 (370)
172 1zu2_A Mitochondrial import re 99.6 3.4E-15 1.2E-19 105.0 10.3 103 144-250 14-137 (158)
173 3mv2_B Coatomer subunit epsilo 99.6 1.1E-13 3.9E-18 108.3 19.2 164 64-235 100-285 (310)
174 1hz4_A MALT regulatory protein 99.6 1.2E-13 4E-18 112.5 20.1 196 34-235 25-247 (373)
175 4f3v_A ESX-1 secretion system 99.6 1.4E-15 4.9E-20 117.6 8.1 178 68-250 11-220 (282)
176 3k9i_A BH0479 protein; putativ 99.6 2.8E-15 9.6E-20 101.8 7.6 96 76-171 2-100 (117)
177 2qfc_A PLCR protein; TPR, HTH, 99.6 1.6E-13 5.4E-18 108.3 18.7 153 95-250 72-248 (293)
178 3ro3_A PINS homolog, G-protein 99.6 2E-14 6.8E-19 102.4 11.8 132 100-234 11-160 (164)
179 3u3w_A Transcriptional activat 99.6 7E-14 2.4E-18 110.3 15.6 157 35-195 87-266 (293)
180 3ro3_A PINS homolog, G-protein 99.6 5.2E-14 1.8E-18 100.2 12.9 137 62-198 7-161 (164)
181 3gw4_A Uncharacterized protein 99.6 8.9E-14 3.1E-18 103.2 14.2 136 62-197 24-178 (203)
182 3mv2_B Coatomer subunit epsilo 99.5 1.6E-12 5.4E-17 101.9 19.3 161 83-250 85-267 (310)
183 1xi4_A Clathrin heavy chain; a 99.5 4.7E-12 1.6E-16 115.3 21.0 171 62-249 1103-1325(1630)
184 4b4t_Q 26S proteasome regulato 99.5 8.5E-13 2.9E-17 109.5 15.0 167 66-235 6-207 (434)
185 2kat_A Uncharacterized protein 99.5 9.1E-13 3.1E-17 88.9 12.1 81 117-197 4-84 (115)
186 4e6h_A MRNA 3'-END-processing 99.5 1E-11 3.4E-16 108.2 21.4 173 60-235 339-536 (679)
187 2l6j_A TPR repeat-containing p 99.5 8E-14 2.7E-18 93.2 6.3 94 132-228 4-103 (111)
188 1na3_A Designed protein CTPR2; 99.5 1.1E-12 3.9E-17 84.2 11.3 82 132-213 9-90 (91)
189 2kat_A Uncharacterized protein 99.5 1.5E-12 5.3E-17 87.7 12.1 100 81-180 2-103 (115)
190 2l6j_A TPR repeat-containing p 99.4 8.1E-14 2.8E-18 93.2 5.0 94 97-190 3-102 (111)
191 1na3_A Designed protein CTPR2; 99.4 2.9E-12 9.9E-17 82.3 11.7 85 96-180 7-91 (91)
192 1xi4_A Clathrin heavy chain; a 99.4 1.7E-10 5.9E-15 105.2 24.2 144 70-229 1055-1247(1630)
193 3ma5_A Tetratricopeptide repea 99.4 4.7E-12 1.6E-16 83.2 9.6 69 128-196 3-71 (100)
194 3ma5_A Tetratricopeptide repea 99.4 6.2E-12 2.1E-16 82.6 10.1 71 162-235 3-73 (100)
195 1b89_A Protein (clathrin heavy 99.4 2.7E-12 9.2E-17 105.0 9.7 166 64-250 61-253 (449)
196 2kc7_A BFR218_protein; tetratr 99.3 3.1E-12 1E-16 83.7 7.7 88 137-235 5-93 (99)
197 2kc7_A BFR218_protein; tetratr 99.3 3.9E-12 1.4E-16 83.2 7.8 91 102-200 4-95 (99)
198 4e6h_A MRNA 3'-END-processing 99.3 3E-10 1E-14 99.0 21.6 173 60-235 374-573 (679)
199 4b4t_Q 26S proteasome regulato 99.3 3.7E-11 1.3E-15 99.5 15.0 166 64-232 55-245 (434)
200 1klx_A Cysteine rich protein B 99.3 8.8E-11 3E-15 81.9 14.0 109 113-232 10-126 (138)
201 1b89_A Protein (clathrin heavy 99.3 3.4E-11 1.2E-15 98.5 13.1 168 64-250 122-294 (449)
202 1klx_A Cysteine rich protein B 99.3 1.3E-10 4.3E-15 81.1 13.7 120 78-207 9-136 (138)
203 3ly7_A Transcriptional activat 99.3 3.7E-10 1.3E-14 90.1 17.8 145 87-235 183-342 (372)
204 3n71_A Histone lysine methyltr 99.2 4.3E-11 1.5E-15 100.5 11.2 125 105-232 316-464 (490)
205 3n71_A Histone lysine methyltr 99.2 1.1E-10 3.6E-15 98.1 13.3 127 70-196 315-465 (490)
206 3ly7_A Transcriptional activat 99.2 6.6E-10 2.2E-14 88.7 16.1 140 60-201 193-345 (372)
207 3u64_A Protein TP_0956; tetrat 99.2 2E-09 6.7E-14 82.7 15.9 106 127-235 147-272 (301)
208 3bee_A Putative YFRE protein; 99.2 6.2E-10 2.1E-14 71.7 11.0 72 128-199 2-76 (93)
209 3bee_A Putative YFRE protein; 99.1 1.8E-09 6E-14 69.5 9.5 71 162-235 2-75 (93)
210 1pc2_A Mitochondria fission pr 99.0 5.2E-09 1.8E-13 72.8 11.3 91 114-204 14-109 (152)
211 1pc2_A Mitochondria fission pr 98.9 2.2E-08 7.4E-13 69.7 11.4 94 80-173 14-112 (152)
212 2v5f_A Prolyl 4-hydroxylase su 98.9 3.1E-08 1.1E-12 65.2 11.4 74 134-207 7-87 (104)
213 3u64_A Protein TP_0956; tetrat 98.9 1.8E-08 6.2E-13 77.4 11.2 107 93-199 147-273 (301)
214 2uy1_A Cleavage stimulation fa 98.9 4.1E-07 1.4E-11 76.8 20.7 160 61-229 210-380 (493)
215 2uy1_A Cleavage stimulation fa 98.9 2.5E-07 8.5E-12 78.1 18.3 146 81-235 196-352 (493)
216 2v5f_A Prolyl 4-hydroxylase su 98.8 6.1E-08 2.1E-12 63.8 11.1 76 98-173 5-87 (104)
217 3qww_A SET and MYND domain-con 98.8 1.9E-08 6.6E-13 83.2 10.5 94 110-203 310-424 (433)
218 4g26_A Pentatricopeptide repea 98.8 3.5E-06 1.2E-10 71.2 24.3 164 66-232 28-204 (501)
219 3qwp_A SET and MYND domain-con 98.8 3E-08 1E-12 82.1 10.2 105 107-211 296-424 (429)
220 3qww_A SET and MYND domain-con 98.7 3.3E-08 1.1E-12 81.8 7.7 86 144-232 310-411 (433)
221 3qwp_A SET and MYND domain-con 98.7 9.7E-08 3.3E-12 79.0 10.4 106 71-176 294-423 (429)
222 4h7y_A Dual specificity protei 98.5 3.6E-06 1.2E-10 57.7 12.9 103 128-234 9-125 (161)
223 1nzn_A CGI-135 protein, fissio 98.5 1.5E-06 5.3E-11 58.2 10.3 85 118-202 21-110 (126)
224 1nzn_A CGI-135 protein, fissio 98.5 4.3E-06 1.5E-10 56.0 11.7 97 77-173 14-115 (126)
225 4h7y_A Dual specificity protei 98.4 1.4E-05 4.9E-10 54.8 12.1 120 94-215 9-142 (161)
226 4g26_A Pentatricopeptide repea 98.3 0.00053 1.8E-08 57.9 23.6 155 35-195 38-204 (501)
227 3ffl_A Anaphase-promoting comp 98.1 4.6E-05 1.6E-09 53.3 11.0 131 67-210 23-165 (167)
228 3ffl_A Anaphase-promoting comp 98.0 0.00014 4.7E-09 51.0 11.2 115 100-229 22-148 (167)
229 1y8m_A FIS1; mitochondria, unk 97.9 0.00078 2.7E-08 45.9 13.4 73 131-203 38-114 (144)
230 3o48_A Mitochondria fission 1 97.9 0.0003 1E-08 47.3 10.9 72 132-203 40-115 (134)
231 1y8m_A FIS1; mitochondria, unk 97.8 0.0011 3.7E-08 45.2 12.4 76 96-171 37-116 (144)
232 4gns_B Protein CSD3, chitin bi 97.7 0.00051 1.7E-08 60.4 12.7 116 76-192 260-397 (754)
233 3o48_A Mitochondria fission 1 97.7 0.00035 1.2E-08 46.9 8.8 70 65-134 41-114 (134)
234 4gns_B Protein CSD3, chitin bi 97.6 0.0019 6.7E-08 56.7 13.9 115 111-229 261-397 (754)
235 3txn_A 26S proteasome regulato 97.5 0.012 4.1E-07 47.8 17.2 165 65-232 20-210 (394)
236 3mkq_B Coatomer subunit alpha; 97.1 0.036 1.2E-06 39.4 14.5 101 74-192 15-115 (177)
237 4b4t_R RPN7, 26S proteasome re 97.0 0.0054 1.8E-07 50.7 10.3 98 133-233 132-238 (429)
238 4b4t_P 26S proteasome regulato 96.9 0.14 4.7E-06 42.5 18.2 170 60-232 52-247 (445)
239 3mkq_B Coatomer subunit alpha; 96.9 0.033 1.1E-06 39.6 12.1 102 107-229 14-115 (177)
240 2ff4_A Probable regulatory pro 96.9 0.028 9.6E-07 45.7 13.2 74 169-245 174-254 (388)
241 3mkq_A Coatomer beta'-subunit; 96.8 0.055 1.9E-06 48.1 15.7 78 108-190 662-747 (814)
242 3kae_A CDC27, possible protein 96.7 0.02 6.7E-07 40.2 9.5 120 75-202 13-150 (242)
243 1zbp_A Hypothetical protein VP 96.7 0.037 1.3E-06 42.1 11.8 57 75-131 8-64 (273)
244 2ff4_A Probable regulatory pro 96.7 0.072 2.5E-06 43.3 14.4 61 134-194 173-233 (388)
245 1ya0_A SMG-7 transcript varian 96.6 0.019 6.4E-07 48.2 10.7 77 100-176 154-230 (497)
246 3mkq_A Coatomer beta'-subunit; 96.6 0.14 4.7E-06 45.5 16.7 75 102-192 633-707 (814)
247 1ya0_A SMG-7 transcript varian 96.5 0.024 8.2E-07 47.6 10.2 79 134-212 154-232 (497)
248 1zbp_A Hypothetical protein VP 96.3 0.088 3E-06 40.0 11.8 93 107-199 6-133 (273)
249 4fhn_B Nucleoporin NUP120; pro 96.3 0.25 8.5E-06 46.1 17.2 141 70-215 818-986 (1139)
250 3spa_A Mtrpol, DNA-directed RN 96.3 0.16 5.4E-06 46.3 15.0 100 63-162 126-231 (1134)
251 3txn_A 26S proteasome regulato 96.3 0.23 7.9E-06 40.3 14.8 113 103-215 104-235 (394)
252 4b4t_P 26S proteasome regulato 96.0 0.19 6.5E-06 41.6 13.3 98 98-195 137-247 (445)
253 3spa_A Mtrpol, DNA-directed RN 95.9 0.37 1.3E-05 44.0 15.1 98 99-196 128-231 (1134)
254 4b4t_S RPN3, 26S proteasome re 95.8 0.017 5.9E-07 48.3 6.2 128 70-199 142-303 (523)
255 4b4t_R RPN7, 26S proteasome re 95.8 0.083 2.8E-06 43.6 10.2 100 98-197 131-239 (429)
256 4b4t_S RPN3, 26S proteasome re 94.7 0.23 7.9E-06 41.6 9.6 128 103-235 141-302 (523)
257 3kae_A CDC27, possible protein 94.7 0.74 2.5E-05 32.5 21.2 187 31-235 10-240 (242)
258 4fhn_B Nucleoporin NUP120; pro 91.7 1.5 5.1E-05 41.0 11.0 118 104-228 818-963 (1139)
259 1qsa_A Protein (soluble lytic 91.6 6.2 0.00021 34.2 20.3 158 64-227 252-437 (618)
260 4gq2_M Nucleoporin NUP120; bet 91.3 4 0.00014 37.4 13.1 113 71-201 817-933 (950)
261 4gq2_M Nucleoporin NUP120; bet 89.4 7.4 0.00025 35.6 13.2 100 138-244 816-938 (950)
262 1qsa_A Protein (soluble lytic 88.2 12 0.00041 32.4 21.9 123 105-231 221-347 (618)
263 4ady_A RPN2, 26S proteasome re 83.8 8.2 0.00028 35.1 10.0 11 220-230 646-656 (963)
264 2wpv_A GET4, UPF0363 protein Y 81.8 17 0.00057 28.4 13.2 150 74-229 23-194 (312)
265 2wpv_A GET4, UPF0363 protein Y 79.9 20 0.00067 28.0 15.9 27 130-156 132-158 (312)
266 3ax2_A Mitochondrial import re 79.4 7 0.00024 23.1 5.5 27 172-198 23-49 (73)
267 3ax2_A Mitochondrial import re 79.1 7.7 0.00026 22.9 5.6 32 137-168 22-53 (73)
268 2ijq_A Hypothetical protein; s 78.9 14 0.00047 25.7 8.6 60 102-161 36-104 (161)
269 3t5v_B Nuclear mRNA export pro 75.8 13 0.00045 30.7 8.2 89 62-150 171-283 (455)
270 3bqo_A Telomeric repeat-bindin 75.7 17 0.00059 26.1 7.5 115 28-144 30-163 (211)
271 3t5x_A PCI domain-containing p 74.3 11 0.00037 27.3 6.6 88 133-228 15-107 (203)
272 3t5v_B Nuclear mRNA export pro 74.3 15 0.00052 30.4 8.1 64 136-199 180-254 (455)
273 4ady_A RPN2, 26S proteasome re 72.9 53 0.0018 30.1 11.7 157 65-227 456-618 (963)
274 2wvi_A Mitotic checkpoint seri 72.6 21 0.00073 24.8 8.6 31 200-233 96-126 (164)
275 3t5x_A PCI domain-containing p 71.6 13 0.00044 26.9 6.4 32 65-96 15-46 (203)
276 1wy6_A Hypothetical protein ST 70.9 22 0.00075 24.2 14.4 120 71-194 14-153 (172)
277 3lpz_A GET4 (YOR164C homolog); 69.8 39 0.0013 26.6 16.7 65 163-230 133-214 (336)
278 2ijq_A Hypothetical protein; s 69.6 25 0.00086 24.4 7.9 60 68-127 36-104 (161)
279 2crb_A Nuclear receptor bindin 69.5 10 0.00034 23.5 4.5 24 170-193 19-42 (97)
280 4aez_C MAD3, mitotic spindle c 68.7 24 0.00083 25.9 7.3 30 166-195 150-179 (223)
281 3bu8_A Telomeric repeat-bindin 68.1 33 0.0011 25.1 12.5 67 80-146 88-162 (235)
282 1om2_A Protein (mitochondrial 65.7 12 0.00042 23.3 4.5 29 137-165 25-53 (95)
283 2cfu_A SDSA1; SDS-hydrolase, l 63.5 21 0.00071 31.2 7.1 61 167-227 450-510 (658)
284 3bu8_A Telomeric repeat-bindin 63.2 34 0.0012 25.0 6.9 65 115-179 89-161 (235)
285 2crb_A Nuclear receptor bindin 61.8 17 0.0006 22.4 4.5 30 63-92 14-43 (97)
286 1om2_A Protein (mitochondrial 61.1 12 0.00042 23.3 3.8 29 170-198 24-52 (95)
287 3re2_A Predicted protein; meni 60.4 56 0.0019 26.1 8.1 25 168-192 298-322 (472)
288 2cwy_A Hypothetical protein TT 58.2 31 0.001 21.4 6.5 55 104-160 7-67 (94)
289 2cfu_A SDSA1; SDS-hydrolase, l 57.7 26 0.0009 30.5 6.8 41 71-111 456-496 (658)
290 2br9_A 14-3-3E, 14-3-3 protein 56.3 59 0.002 24.1 14.3 160 67-231 8-201 (234)
291 3esl_A Checkpoint serine/threo 55.6 56 0.0019 23.6 11.2 71 59-130 75-147 (202)
292 2rpa_A Katanin P60 ATPase-cont 55.4 13 0.00043 22.3 3.1 24 103-126 17-40 (78)
293 2w2u_A Hypothetical P60 katani 53.2 22 0.00076 21.5 4.0 20 107-126 28-47 (83)
294 3ubw_A 14-3-3E, 14-3-3 protein 53.1 71 0.0024 24.1 16.0 162 66-231 33-227 (261)
295 2w2u_A Hypothetical P60 katani 52.0 29 0.001 20.9 4.5 17 177-193 30-46 (83)
296 3bqo_A Telomeric repeat-bindin 51.8 13 0.00044 26.8 3.1 38 67-104 120-157 (211)
297 2npm_A 14-3-3 domain containin 51.3 76 0.0026 23.9 16.0 160 67-231 31-226 (260)
298 3esl_A Checkpoint serine/threo 51.3 66 0.0023 23.2 14.7 48 149-196 96-145 (202)
299 3uzd_A 14-3-3 protein gamma; s 50.1 78 0.0027 23.7 14.9 162 67-231 7-202 (248)
300 2rpa_A Katanin P60 ATPase-cont 50.0 16 0.00055 21.8 3.0 27 203-232 15-41 (78)
301 3u84_A Menin; MLL, JUND, ledgf 49.8 97 0.0033 25.4 8.1 28 166-193 318-345 (550)
302 3re2_A Predicted protein; meni 49.7 66 0.0023 25.8 7.0 79 67-160 238-324 (472)
303 2v6y_A AAA family ATPase, P60 49.6 27 0.00093 21.0 4.0 18 109-126 22-39 (83)
304 1o9d_A 14-3-3-like protein C; 48.5 85 0.0029 23.7 16.1 160 67-231 11-206 (260)
305 4a5x_A MITD1, MIT domain-conta 46.0 42 0.0014 20.4 4.5 21 106-126 24-44 (86)
306 4b4t_O 26S proteasome regulato 45.3 1.2E+02 0.0041 24.4 11.5 89 106-194 84-197 (393)
307 4gq4_A Menin; tumor suppressor 45.1 1.3E+02 0.0043 24.7 8.1 43 151-193 283-330 (489)
308 3u84_A Menin; MLL, JUND, ledgf 43.8 1.3E+02 0.0046 24.6 9.0 83 66-160 259-346 (550)
309 3lpz_A GET4 (YOR164C homolog); 43.5 1.2E+02 0.0041 23.9 22.1 122 129-250 133-294 (336)
310 2p58_C Putative type III secre 42.9 62 0.0021 20.5 10.4 83 67-155 10-92 (116)
311 3myv_A SUSD superfamily protei 41.4 80 0.0027 25.9 7.0 30 97-126 189-218 (454)
312 2dl1_A Spartin; SPG20, MIT, st 41.2 18 0.00063 23.4 2.4 14 180-193 36-49 (116)
313 2v6x_A Vacuolar protein sortin 40.4 54 0.0019 19.6 4.5 17 178-194 25-41 (85)
314 3myv_A SUSD superfamily protei 40.3 85 0.0029 25.8 7.0 30 166-195 190-219 (454)
315 2uwj_G Type III export protein 38.3 75 0.0026 20.1 9.3 82 69-156 11-92 (115)
316 1wfd_A Hypothetical protein 15 37.8 51 0.0017 20.3 4.0 18 109-126 26-43 (93)
317 3kez_A Putative sugar binding 37.6 92 0.0032 25.6 6.8 30 166-195 196-225 (461)
318 3kez_A Putative sugar binding 37.4 92 0.0031 25.6 6.8 31 97-127 195-225 (461)
319 3lew_A SUSD-like carbohydrate 36.9 1.1E+02 0.0037 25.5 7.2 30 98-127 203-232 (495)
320 2npu_A FKBP12-rapamycin comple 36.4 91 0.0031 20.5 5.4 57 67-126 43-102 (126)
321 3lew_A SUSD-like carbohydrate 36.0 1.2E+02 0.0042 25.2 7.3 31 166-196 203-233 (495)
322 3mcx_A SUSD superfamily protei 34.0 1.1E+02 0.0036 25.4 6.6 30 166-195 202-231 (477)
323 3mcx_A SUSD superfamily protei 33.5 98 0.0034 25.6 6.4 31 97-127 201-231 (477)
324 4aez_C MAD3, mitotic spindle c 33.4 1.4E+02 0.0049 21.9 9.6 46 117-162 133-180 (223)
325 2cwy_A Hypothetical protein TT 32.8 88 0.003 19.3 6.4 55 70-126 7-67 (94)
326 3lxu_X Tripeptidyl-peptidase 2 31.9 3.6E+02 0.012 26.0 15.3 43 67-109 1110-1152(1354)
327 2cpt_A SKD1 protein, vacuolar 30.2 1.1E+02 0.0039 19.7 7.6 11 149-159 16-26 (117)
328 3mv2_A Coatomer subunit alpha; 29.6 2E+02 0.0069 22.5 10.2 26 174-199 215-240 (325)
329 3eab_A Spastin; spastin, MIT, 28.9 34 0.0012 21.0 2.1 17 180-196 11-27 (89)
330 3ph0_C ASCG; type III secretio 28.5 80 0.0027 17.5 6.0 15 103-117 45-59 (61)
331 3lvg_A Clathrin heavy chain 1; 27.4 0.038 1.3E-06 45.9 -14.5 130 68-214 148-277 (624)
332 1bpo_A Protein (clathrin); cla 26.1 2.9E+02 0.0098 23.1 9.3 125 61-192 358-482 (494)
333 3mv2_A Coatomer subunit alpha; 25.9 2.4E+02 0.0082 22.1 11.8 98 68-165 118-240 (325)
334 2yhe_A SEC-alkyl sulfatase; hy 31.6 15 0.0005 32.2 0.0 47 169-215 464-510 (668)
335 3hdx_A SUSD homolog, SUSD supe 25.6 2E+02 0.0067 23.8 6.9 30 98-127 197-226 (478)
336 3qnk_A Putative lipoprotein; a 24.7 2.1E+02 0.0072 23.9 6.9 30 166-195 182-211 (517)
337 3qnk_A Putative lipoprotein; a 24.4 2.2E+02 0.0074 23.8 6.9 31 97-127 181-211 (517)
338 3jq1_A SUSD superfamily protei 24.0 1.5E+02 0.0051 24.6 5.8 30 97-126 179-208 (481)
339 2yhe_A SEC-alkyl sulfatase; hy 28.8 18 0.0006 31.7 0.0 47 70-116 467-513 (668)
340 4b4t_O 26S proteasome regulato 22.3 3E+02 0.01 22.0 10.5 89 73-161 85-198 (393)
341 4a1g_A Mitotic checkpoint seri 22.3 1.9E+02 0.0066 19.7 12.1 48 83-130 84-133 (152)
342 3efz_A 14-3-3 protein; 14-3-3, 22.2 1.6E+02 0.0055 22.3 5.1 16 145-160 210-225 (268)
343 2e2a_A Protein (enzyme IIA); h 22.1 1.5E+02 0.005 18.8 4.2 31 96-126 18-48 (105)
344 3uzd_A 14-3-3 protein gamma; s 22.0 2.5E+02 0.0086 21.0 8.2 15 145-159 187-201 (248)
345 2npu_A FKBP12-rapamycin comple 22.0 1.8E+02 0.006 19.2 6.0 18 141-158 49-66 (126)
346 1wy6_A Hypothetical protein ST 21.8 2E+02 0.0067 19.6 15.5 120 105-232 14-154 (172)
347 1wcr_A PTS system, N, N'-diace 21.8 1.5E+02 0.0052 18.7 4.2 31 96-126 16-46 (103)
348 2qx5_A Nucleoporin NIC96; mRNA 21.3 3.6E+02 0.012 23.6 7.7 93 65-157 444-563 (661)
349 3snx_A SUSD homolog, putative 21.1 1.1E+02 0.0039 25.1 4.5 32 96-127 189-220 (460)
350 2p58_C Putative type III secre 20.2 1.8E+02 0.0061 18.5 9.1 46 173-226 47-92 (116)
No 1
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.97 E-value=3.7e-29 Score=184.74 Aligned_cols=178 Identities=16% Similarity=0.051 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
+...+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
+...++++.|+..+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+ +++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---RDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccCCCcchhHHHh
Q 024712 222 AKKYYASTIDLTGGKNTKALFG 243 (263)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~ 243 (263)
|+.+|+++++++|+ ++....+
T Consensus 160 A~~~~~~al~~~p~-~a~~~la 180 (184)
T 3vtx_A 160 AVKYFKKALEKEEK-KAKYELA 180 (184)
T ss_dssp HHHHHHHHHHTTHH-HHHHCSC
T ss_pred HHHHHHHHHhCCcc-CHHHHHH
Confidence 99999999999996 5544333
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=9.6e-29 Score=187.53 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=176.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|..+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 141 IAKAQ-----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 141 ~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 210 ~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+...|+ +++|+..|+++++++|+ +..+++.++.+...
T Consensus 161 ~~~~g~---~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 161 YLSMGR---LDEALAQYAKALEQAPK-DLDLRVRYASALLL 197 (217)
T ss_dssp HHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 999999 99999999999999997 88888887777654
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=1e-26 Score=176.32 Aligned_cols=184 Identities=19% Similarity=0.091 Sum_probs=161.7
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---- 111 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---- 111 (263)
.++.++++......+.. +|+.+.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 18 ~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 18 LGRYDAALTLFERALKE-------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp TTCHHHHHHHHHHHHTT-------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence 45567777777776655 8899999999999999999999999999999999999999999999999999
Q ss_pred -------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712 112 -------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 184 (263)
Q Consensus 112 -------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 184 (263)
|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++-
T Consensus 170 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~ 212 (217)
T 2pl2_A 170 ALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999998864
No 4
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=5.7e-27 Score=191.62 Aligned_cols=191 Identities=12% Similarity=0.074 Sum_probs=179.1
Q ss_pred ccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCCCHHH
Q 024712 56 RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 56 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~ 134 (263)
...++|+...++..++.++...|++++|+..+++++..+|++..++..+|.++...|+ +++|+..|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3456888999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-c
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-L 213 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 213 (263)
|..+|.++...|++++|+..|+++++++|++..+|+.+|.++...|++++|+.+|+++++++|++..+|.++|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCcHHHH-----HHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 214 GGVDNILLA-----KKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 214 g~~~~~~~A-----~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
|. .++| +.+|.+++.++|+ +..+|+.+..+...
T Consensus 249 ~~---~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 249 GY---NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD 286 (382)
T ss_dssp CS---CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT
T ss_pred Cc---chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHc
Confidence 55 4777 5999999999997 77788777766554
No 5
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.95 E-value=1.2e-26 Score=203.25 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=168.7
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
..|+...++.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (263)
|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~--- 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD--- 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCC
Q 024712 219 ILLAKKYYASTIDLTGG 235 (263)
Q Consensus 219 ~~~A~~~~~~al~~~~~ 235 (263)
+++|.+.|++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999987653
No 6
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.95 E-value=6.1e-26 Score=173.13 Aligned_cols=180 Identities=11% Similarity=-0.004 Sum_probs=168.9
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
..+..+..+|..++..|++++|+..|+++++..| .+..+++.+|.++...|++++|+..+++++..+|++..++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3457889999999999999999999999999998 888999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLY 211 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 211 (263)
++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999998 66999999999999999999999999999999 8999999999999
Q ss_pred hcCCCCcH---------------------------HHHHHHHHHhhccCCCcchhHHHhHH
Q 024712 212 TLGGVDNI---------------------------LLAKKYYASTIDLTGGKNTKALFGIC 245 (263)
Q Consensus 212 ~~g~~~~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~l~ 245 (263)
..|+ . ++|+.+|+++++++|+ +..+...+.
T Consensus 165 ~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 165 NNGA---DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HHHH---HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHH---HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 9998 7 9999999999999997 655554443
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.4e-25 Score=183.30 Aligned_cols=215 Identities=10% Similarity=0.077 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC-LDVAKDCIKVLQKQFPESKRVG 101 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~ 101 (263)
.++.++..+... ..+.+.++.....++.. +|+...+|..+|.++...|+ +++|+..|++++..+|+++.++
T Consensus 98 ~a~~~lg~~~~~-~g~~~~Al~~~~~al~l-------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 98 DVYDYFRAVLQR-DERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHH-TCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHH-CCChHHHHHHHHHHHHh-------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 355555555433 35677777777776655 88999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cc
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQ 180 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g 180 (263)
..+|.++...|++++|+..|++++.++|++..+|..+|.++...|++++|+..++++++++|++..+|+.+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred cHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 181 MYKQA-----AFCYEELILSQPTVPLYHLAYADVLYTLG--GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 181 ~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.+++| +.+|++++.++|++..+|..+|.++...| + +++|+..+.++ +.+|+ ...++..++.++..
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~---~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~ 321 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK---YPNLLNQLLDL-QPSHS-SPYLIAFLVDIYED 321 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG---CHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc---hHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHH
Confidence 65777 59999999999999999999999999988 6 89999999998 88886 77777777766544
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1e-24 Score=179.09 Aligned_cols=186 Identities=18% Similarity=0.119 Sum_probs=116.9
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|+...++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|+ +
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---I 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---H
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC---H
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666666 6
Q ss_pred HHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 220 LLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
++|+..|+++++.+|+ +..+++.++.++.
T Consensus 322 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 6666666666666664 4445554444433
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.3e-24 Score=171.57 Aligned_cols=186 Identities=16% Similarity=0.099 Sum_probs=172.9
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
..|....++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++..+|.++.++..+
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 36777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETF---------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+.+++++++.+|+++.++..+|.+
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 999999999999999999999987 67778999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 210 ~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
+...|+ +++|..+|+++++++|+ +..++..++.+.
T Consensus 280 ~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 280 HSLMGN---FENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTC---HHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHhcc---HHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 999999 99999999999999996 777887777776
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.6e-24 Score=177.99 Aligned_cols=187 Identities=17% Similarity=0.116 Sum_probs=134.6
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
+|+...++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55666666666777766777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+ +
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~ 287 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS---V 287 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---H
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---H
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777777 7
Q ss_pred HHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 220 LLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
++|+..|+++++.+|+ +...+..++.++..
T Consensus 288 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPT-HADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHH
Confidence 7777777777777775 55566555555433
No 11
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.94 E-value=6.5e-25 Score=185.02 Aligned_cols=189 Identities=14% Similarity=0.012 Sum_probs=178.7
Q ss_pred cccCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH 135 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 135 (263)
....|....++..+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++
T Consensus 95 ~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 173 (474)
T 4abn_A 95 LGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSL 173 (474)
T ss_dssp HTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHH
T ss_pred hccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHH
Confidence 344778899999999999999999 99999999999999999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHhhCC-
Q 024712 136 KRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL--------QMYKQAAFCYEELILSQP- 197 (263)
Q Consensus 136 ~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p- 197 (263)
..+|.++... |++++|+..++++++.+|+++.+|..+|.++... |++++|+.+|+++++++|
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 9999999999 9999999999999999999999999999999999 999999999999999999
Q ss_pred --CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 198 --TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 198 --~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.++.++..+|.++...|+ +++|+..|+++++++|+ +..++..+..+...
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEES---YGEALEGFSQAAALDPA-WPEPQQREQQLLEF 304 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999997 77777766666544
No 12
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1.4e-24 Score=166.51 Aligned_cols=200 Identities=12% Similarity=0.011 Sum_probs=180.0
Q ss_pred CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (263)
++.+.++......+.. .|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++
T Consensus 37 ~~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEE-------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----CCTTHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence 3444555555554443 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
|.++.++..+|.++...|+ +++|..+|+++++++|+ +..++..+...
T Consensus 190 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 236 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPD-HMLALHAKKLL 236 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTT-CHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcc-hHHHHHHHHHH
Confidence 9999999999999999999 99999999999999996 66666555433
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=4.5e-25 Score=179.73 Aligned_cols=203 Identities=10% Similarity=0.032 Sum_probs=158.8
Q ss_pred CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (263)
++.+.++......+.. .|....++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++
T Consensus 79 g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQ-------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHH
Confidence 3455555555555443 567777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHH----------HHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHH
Q 024712 117 AEKAYSSLLEDNPLDPVLHKR----------RVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQ 184 (263)
Q Consensus 117 A~~~~~~~~~~~p~~~~~~~~----------l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~ 184 (263)
|+..+++++..+|.+...+.. +|.++...|++++|+..++++++.+|. ++.++..+|.++...|++++
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 888888888877765544443 377777788888888888888888888 88889999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
|+.+|+++++.+|.++.++..+|.++...|+ +++|+..|+++++++|+ +..+++.++.++..
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDR---SEEAVEAYTRALEIQPG-FIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999886 67777777666555
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.8e-24 Score=169.76 Aligned_cols=224 Identities=11% Similarity=-0.062 Sum_probs=184.0
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCc---------ccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDP---------KKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQK 92 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~ 92 (263)
.|..++..+....+.+.......+....... .......|....++..+|.++...| ++++|+..+++++.
T Consensus 40 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 119 (330)
T 3hym_B 40 MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119 (330)
T ss_dssp HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566666655555555443333222221110 0112337777888899999999999 89999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (263)
..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQ---------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 243 (263)
|.++...|++++|+.++++++... |..+.++..+|.++...|+ +++|+.+|+++++.+|+ +..+++.
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~ 275 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQ-NASTYSA 275 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CSHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCcc-chHHHHH
Confidence 999999999999999999999876 6667889999999999999 99999999999999886 7777777
Q ss_pred HHHHHhh
Q 024712 244 ICLVMFV 250 (263)
Q Consensus 244 l~~~~~~ 250 (263)
++.++..
T Consensus 276 la~~~~~ 282 (330)
T 3hym_B 276 IGYIHSL 282 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 15
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=9.1e-24 Score=159.94 Aligned_cols=185 Identities=13% Similarity=0.059 Sum_probs=171.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
+|..+.++..+|..+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 024712 140 AIAKAQ-GNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (263)
Q Consensus 140 ~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 216 (263)
.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~- 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ- 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-
Confidence 999999 999999999999999 6677789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhccCC-CcchhHHHhHHHHH
Q 024712 217 DNILLAKKYYASTIDLTG-GKNTKALFGICLVM 248 (263)
Q Consensus 217 ~~~~~A~~~~~~al~~~~-~~~~~~~~~l~~~~ 248 (263)
+++|...++++++.+| . ....++.+..++
T Consensus 163 --~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~ 192 (225)
T 2vq2_A 163 --LGDADYYFKKYQSRVEVL-QADDLLLGWKIA 192 (225)
T ss_dssp --HHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence 9999999999999988 6 555555444443
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.8e-24 Score=165.39 Aligned_cols=199 Identities=12% Similarity=0.016 Sum_probs=173.9
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-------HHHHHHHHHHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGILL 108 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~~ 108 (263)
.++.+.++......+.. . ....++..+|.++...|++++|+..++++++..|++ +.++..+|.++
T Consensus 18 ~~~~~~A~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWEL-------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp TTCHHHHHHHHHHHHHH-------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh-------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 34566666666666544 2 446778889999999999999999999999988765 68889999999
Q ss_pred HHcCcHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 109 EAKGLWAEAEKAYSSLLE--------------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
...|++++|+..+++++. .+|.++.++..+|.++...|++++|+..+++++..+
T Consensus 90 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999998 666677889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC------CCc
Q 024712 163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT------GGK 236 (263)
Q Consensus 163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~------~~~ 236 (263)
|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+ +++|..+|+++++++ |.
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~p~- 245 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE---YASALETLDAARTKDAEVNNGSS- 245 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhChhhcCCCc-
Confidence 99999999999999999999999999999999999999999999999999999 999999999999998 64
Q ss_pred chhHHHhHHH
Q 024712 237 NTKALFGICL 246 (263)
Q Consensus 237 ~~~~~~~l~~ 246 (263)
+...+..+..
T Consensus 246 ~~~~~~~l~~ 255 (258)
T 3uq3_A 246 AREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=2.2e-23 Score=169.51 Aligned_cols=204 Identities=11% Similarity=0.102 Sum_probs=166.2
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.++.+.++......+.. .|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 77 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp TTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455555555555544 66777788888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHhcC-------------------------------------------------CC--CHHHHHHHHHHHHH
Q 024712 116 EAEKAYSSLLEDN-------------------------------------------------PL--DPVLHKRRVAIAKA 144 (263)
Q Consensus 116 ~A~~~~~~~~~~~-------------------------------------------------p~--~~~~~~~l~~~~~~ 144 (263)
+|+..+++++... |. ++.++..+|.++..
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 7777777666544 44 56778888999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~ 224 (263)
.|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+ +++|+.
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 306 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVE 306 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccCCCcc-----------hhHHHhHHHHHhh
Q 024712 225 YYASTIDLTGGKN-----------TKALFGICLVMFV 250 (263)
Q Consensus 225 ~~~~al~~~~~~~-----------~~~~~~l~~~~~~ 250 (263)
+|+++++++|+ . ..++..++.++..
T Consensus 307 ~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 307 HFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHH
Confidence 99999988875 3 5666666666554
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.4e-24 Score=175.41 Aligned_cols=225 Identities=14% Similarity=0.115 Sum_probs=183.6
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ 93 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 93 (263)
.|+.++..+....+........++........ ......|....++..+|.++...|++++|+..+++++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 45666666666665555544444444332211 123347888999999999999999999999999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 94 FPESKRVGRLE----------GILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 94 ~p~~~~~~~~~----------a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
.|+++.++..+ |.++...|++++|+..+++++..+|. ++.++..+|.++...|++++|+..++++++.
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99776655544 89999999999999999999999999 8999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc-----
Q 024712 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK----- 236 (263)
Q Consensus 162 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~----- 236 (263)
+|.++.+|..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+.+|+++++++|+.
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999 999999999999998751
Q ss_pred ------chhHHHhHHHHHhh
Q 024712 237 ------NTKALFGICLVMFV 250 (263)
Q Consensus 237 ------~~~~~~~l~~~~~~ 250 (263)
....+..+..++..
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHH
Confidence 24555566665444
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=1.6e-23 Score=161.72 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=163.4
Q ss_pred cCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 59 LGPDV-WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 59 ~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
.+|.. ..++..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 35554 77888889999999999999999999999999888889999999999999999999999999999988888899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988 7788888889999999999999999999999999999888889999999999999
Q ss_pred CCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 216 VDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 216 ~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+++|...|+++++..|. ....++.++.++..
T Consensus 191 ---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 191 ---YVPARQYYDLFAQGGGQ-NARSLLLGIRLAKV 221 (252)
T ss_dssp ---HHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 99999999999988885 66666666655544
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.9e-24 Score=163.92 Aligned_cols=185 Identities=14% Similarity=0.020 Sum_probs=173.0
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PV 133 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~ 133 (263)
+..+..+..+|..++..|++++|+.+++++++.. .++.++..+|.++...|++++|+..+++++..+|.+ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3567789999999999999999999999999999 899999999999999999999999999999998876 68
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH--------------------------hcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLE--------------------------TFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
++..+|.++...|++++|+..+++++. .+|.++.++..+|.++...|++++|+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999 667778899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+|++++..+|.++.++..+|.++...|+ +++|+..|+++++.+|+ +..+++.++.++..
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999996 77778777777655
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=4.9e-23 Score=159.03 Aligned_cols=194 Identities=12% Similarity=-0.008 Sum_probs=179.1
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.++.+.++......+.. .|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 50 ~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEI-------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp TTCTGGGHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCChHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence 44566666666665544 56778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 116 EAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 116 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
+|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999 7888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712 194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (263)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~ 240 (263)
...|.+..++..++.++...|+ +++|..+++++++..|+ +...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~ 245 (252)
T 2ho1_A 203 QGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPG-SLEY 245 (252)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-SHHH
T ss_pred HhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCC-CHHH
Confidence 9999999999999999999999 99999999999999996 4443
No 22
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.92 E-value=8.5e-24 Score=164.59 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=162.2
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-- 131 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-- 131 (263)
....|..+..+..+|..++..|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34577888999999999999999999999999999999988 8899999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHH--------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhcccHHHH
Q 024712 132 -PVLHKRRVAIAKA--------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQA 185 (263)
Q Consensus 132 -~~~~~~l~~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~~~A 185 (263)
+.+++.+|.++.. .|++++|+..|++++..+|+++.++ +.+|.+|...|++++|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 5689999999999 9999999999999999999987665 8889999999999999
Q ss_pred HHHHHHHHhhCCCC---HHHHHHHHHHHHhc----------CCCCcHHHHHHHHHHhhccCCC
Q 024712 186 AFCYEELILSQPTV---PLYHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 186 ~~~~~~al~~~p~~---~~~~~~la~~~~~~----------g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+..|+++++..|++ +.++..+|.++..+ |+ +++|+..|+++++..|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC
Confidence 99999999999984 56899999999988 77 99999999999999997
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=3.9e-22 Score=161.12 Aligned_cols=186 Identities=10% Similarity=-0.089 Sum_probs=170.5
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH---
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK--- 136 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--- 136 (263)
.|..+.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ---------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH----HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 137 ---------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDA----WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 137 ---------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
.+|.++...|++++|+..+++++...|.++.. +..+|.++...|++++|+.+++++++.+|+++.++
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 34888999999999999999999999998744 56799999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
..+|.++...|+ +++|...|+++++++|+ +..++..+..+..
T Consensus 310 ~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 310 KDRAEAYLIEEM---YDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 999999999999 99999999999999996 7777766665543
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=9e-24 Score=162.03 Aligned_cols=184 Identities=14% Similarity=0.026 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....+..+|..+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 55667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+ +++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM---LDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 223 KKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+..|+++++.+|+ +...++.++.++..
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 9999999999996 77777777777655
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.92 E-value=1.5e-23 Score=153.80 Aligned_cols=171 Identities=15% Similarity=0.039 Sum_probs=165.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
.....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+ +++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccCCC
Q 024712 222 AKKYYASTIDLTGG 235 (263)
Q Consensus 222 A~~~~~~al~~~~~ 235 (263)
|..+++++++.+|+
T Consensus 163 A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 163 ALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999886
No 26
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.92 E-value=7.6e-24 Score=159.46 Aligned_cols=168 Identities=13% Similarity=-0.023 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL----------------EGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...+...|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc--HHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--YKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|+..|+ ...+...+.+++...|. ..+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 999999999999999999999999999999999999999999999999987764 45677788877654332 346788
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 206 YADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 206 la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+|.++...|+ +++|+.+|+++++++|+
T Consensus 163 ~g~~~~~~~~---~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTR---YEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccC---HHHHHHHHHHHHHhCCC
Confidence 8999999999 99999999999999996
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.3e-22 Score=163.91 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=179.9
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.++.+.++.....++.. .|..+.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 16 ~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred cCCHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 45667777777766654 67778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 116 EAEKAYSSLLEDNP---LDPVLHKRR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 116 ~A~~~~~~~~~~~p---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
+|+..+++++..+| +++.++..+ |.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence 99999999999999 888887777 789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~ 240 (263)
++++|+..+++++...|.++.++..+|.++...|+ +++|+..|+++++.+|+ ....
T Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~ 224 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKLDQD-HKRC 224 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc-chHH
Confidence 99999999999999999999999999999999999 99999999999999997 4443
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=2.2e-23 Score=162.66 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVA 140 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~ 140 (263)
.++...|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++. .|.++ .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999 44443 45899999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|...+..++ ++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE---YV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---HH
Confidence 999999999999999999999999999999999999999999999999999999999999999999955555668 99
Q ss_pred HHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 221 LAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+|+..|+++++.+|+ +..+++.++.+...
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 999999999999996 66777666666544
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=2.8e-22 Score=151.70 Aligned_cols=194 Identities=15% Similarity=0.058 Sum_probs=177.4
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CcH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLW 114 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~ 114 (263)
.++.+.++......+.. .|....++..+|.++...|++++|+..+++++...|.++.++..+|.++... |++
T Consensus 21 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 21 GQDYRQATASIEDALKS-------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HhhHHHHHHHHHHHHHh-------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 45566777666666544 5667888999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 115 AEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 115 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999 667778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCC-CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712 193 ILSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (263)
Q Consensus 193 l~~~p-~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~ 240 (263)
+...| .++..+..++.++...|+ .++|..+++.+.+.+|+ +..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~ 218 (225)
T 2vq2_A 174 QSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPY-SEEL 218 (225)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCC-CHHH
Confidence 99999 999999999999999999 99999999999989886 4443
No 30
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.92 E-value=8.3e-25 Score=156.17 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=127.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
+|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56677778889999999999988888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
+|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998877665 588999999999998888888888775
No 31
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.6e-22 Score=167.55 Aligned_cols=185 Identities=10% Similarity=-0.077 Sum_probs=173.2
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
..|....++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++...+..+
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred ------------HHHHHHcCChhHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712 139 ------------VAIAKAQGNFPTAIEWLNKYLETFMADHD----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (263)
Q Consensus 139 ------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (263)
|.++...|++++|+..|++++...|.++. .+..+|.++...|++++|+..+++++..+|+++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 99999999999999999999999999854 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
+..+|.++...|+ +++|+..|+++++++|+ +..++..+..+
T Consensus 332 ~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 372 (450)
T 2y4t_A 332 LKDRAEAYLIEEM---YDEAIQDYETAQEHNEN-DQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 9999999999999 99999999999999997 67776666644
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=8.3e-23 Score=163.24 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=154.9
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.++.++++.....++.. .|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 34 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQA-------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hccHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence 34566666666665544 56677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRR--------------VA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
+|+..+++++..+|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 88888888888877776665555 44 5667777788888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
++++|+.++++++..+|+++.++..+|.++...|+ +++|+..|+++++.+|+ +..+++.++.++..
T Consensus 187 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR---PQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888 88888888888887775 66666666655544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=5.1e-22 Score=157.03 Aligned_cols=185 Identities=11% Similarity=0.016 Sum_probs=132.5
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (263)
+.+.++.....++.. ...|+.+.++..+|.++...|++++|+..+++ |+++.++..+|.++...|++++|
T Consensus 80 ~~~~A~~~l~~ll~~-----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 80 RRDAIVAELDREMSR-----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp THHHHHHHHHHHHHS-----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345555555554433 12466677777777777777888888877776 77777777778888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH--HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRV--AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+..+++++..+|++.......+ .++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888777777654333222 33334577778888888888778877777777888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhccCCC
Q 024712 196 QPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDLTGG 235 (263)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~~~~-A~~~~~~al~~~~~ 235 (263)
+|+++.++.++|.++...|+ ..+ +..+++++++++|+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCC
Confidence 88888777788877777777 654 45777777777775
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2.7e-23 Score=182.09 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=147.8
Q ss_pred hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (263)
..|+++.++.++|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
|.++..+|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+..|+++++++|+ +..++..++.++..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPD-FPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence 9999999999999999999999999999999999999999999 99999999999999997 88888888877665
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1e-22 Score=170.08 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHK 136 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~ 136 (263)
.|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++..+|.+. .++.
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 5556666667777777777777777777777777777777777777777777777777777777777777666 5544
Q ss_pred HH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712 137 RR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 137 ~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
.+ |.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 215 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44 444666777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+|.++...|+ +++|+..|++++..+|+
T Consensus 216 ~l~~~~~~~g~---~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 216 KISTLYYQLGD---HELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 77777777777 77777777777777664
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=2.3e-22 Score=163.54 Aligned_cols=183 Identities=15% Similarity=0.059 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
...+..+|..+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhc-------------------------------------------------CC--CHHHHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETF-------------------------------------------------MA--DHDAWREL 172 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~-------------------------------------------------p~--~~~~~~~l 172 (263)
..|++++|+..+++++... |. ++.++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 9999888888877766554 44 67888899
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
|.++...|++++|+.+|++++..+|.++.++..+|.++...|+ +++|+..|+++++++|+ ...+++.++.++..
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999986 77777777777655
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=1.4e-22 Score=161.96 Aligned_cols=225 Identities=16% Similarity=0.148 Sum_probs=185.6
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ 93 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 93 (263)
.|..++..+....+........++........ ......|....++..+|.++...|++++|+..+++++..
T Consensus 39 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 39 EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566655555555544444444333322211 112337788889999999999999999999999999999
Q ss_pred CCCcHHHHHHH--------------HH-HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712 94 FPESKRVGRLE--------------GI-LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 158 (263)
Q Consensus 94 ~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (263)
.|.+...+..+ +. ++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 198 (327)
T 3cv0_A 119 QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198 (327)
T ss_dssp STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99888777666 66 6888899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc--
Q 024712 159 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK-- 236 (263)
Q Consensus 159 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~-- 236 (263)
++.+|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|+ +++|+..|++++...|..
T Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 199 VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ---YDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTSCC
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999998852
Q ss_pred ---------chhHHHhHHHHHhh
Q 024712 237 ---------NTKALFGICLVMFV 250 (263)
Q Consensus 237 ---------~~~~~~~l~~~~~~ 250 (263)
...++..++.++..
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHh
Confidence 45666666666554
No 38
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=5.5e-22 Score=171.35 Aligned_cols=183 Identities=17% Similarity=0.063 Sum_probs=111.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|....++..++..+...|++++|+..|++++...|+++.++..++.++...|++++|+..|+++++..|.++.++..++
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 44455555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHh------cCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 140 AIAKAQGNFPTAIEWLNKYLET------FMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
.++...|++++|+..|+++++. +|.+ ..+|..+|.++...|++++|+..++++++.+|+++.++..+|.+|..
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666666666666666666655 3332 45566666666666666666666666666666666666666666666
Q ss_pred cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHH
Q 024712 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~ 246 (263)
.|+ +++|...|+++++++|+ +..++..+..
T Consensus 563 ~g~---~~~A~~~~~~~l~~~p~-~~~~~~~l~~ 592 (597)
T 2xpi_A 563 KKI---PGLAITHLHESLAISPN-EIMASDLLKR 592 (597)
T ss_dssp TTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hCC---HHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 666 66666666666666664 4444444443
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.6e-22 Score=149.01 Aligned_cols=152 Identities=19% Similarity=0.091 Sum_probs=145.1
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
++++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
++...++++.|+..+.+++..+|.++.++..+|.++...|+ +++|+..|+++++++|. +..+++.++.++..
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcch-hhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999996 88888888887766
No 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.3e-21 Score=169.04 Aligned_cols=187 Identities=14% Similarity=0.009 Sum_probs=173.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|+...++..++..+...|++++|+.+|+++++..|.+..++..++.++...|++++|+..|++++...|.+..++..++
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHh
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS------QPTV-PLYHLAYADVLYT 212 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~ 212 (263)
.++...|++++|+..|+++++..|.++.+|..+|.++...|++++|+.+|+++++. +|++ ..++..+|.++..
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 5654 6789999999999
Q ss_pred cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.|+ +++|+..|+++++.+|+ +..++..++.++..
T Consensus 529 ~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 529 LKM---YDAAIDALNQGLLLSTN-DANVHTAIALVYLH 562 (597)
T ss_dssp TTC---HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHH
T ss_pred hcC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 999 99999999999999996 77777777776655
No 41
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.6e-23 Score=183.82 Aligned_cols=183 Identities=15% Similarity=0.050 Sum_probs=170.3
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQ--------KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 130 (263)
.+|+.+..+...+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4555555555555 77899999999999999 889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (263)
+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++++|+++.++.++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 211 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 211 ~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
...|+ +++|+..|+++++++|+ +..+++.++.+..
T Consensus 545 ~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 545 SAEGD---RVGAVRTLDEVPPTSRH-FTTARLTSAVTLL 579 (681)
T ss_dssp HHTTC---HHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC
T ss_pred HHcCC---HHHHHHHHHhhcccCcc-cHHHHHHHHHHHH
Confidence 99999 99999999999999996 7888887777753
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=1.4e-22 Score=170.87 Aligned_cols=183 Identities=10% Similarity=-0.050 Sum_probs=169.2
Q ss_pred cCCh-hHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---
Q 024712 36 VRRP-DKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--- 111 (263)
Q Consensus 36 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--- 111 (263)
.++. ++++......+.. +|+...++..+|.++...|++++|+..|+++++..|+ +.++..+|.++...
T Consensus 115 ~g~~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp SSSCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCS
T ss_pred ccccHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccC
Confidence 3444 5565555555443 7888999999999999999999999999999999999 79999999999999
Q ss_pred ------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 024712 112 ------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFM---ADHDAWRELAE 174 (263)
Q Consensus 112 ------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~la~ 174 (263)
|++++|+..|++++..+|++..++..+|.++... |++++|+..|+++++++| .++.+|+.+|.
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999 99999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
++...|++++|+..|+++++++|+++.++..++.++...|+ +++|+..+.+.
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~---~~eAi~~~~~~ 318 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR---LTSLLESKGKT 318 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence 99999999999999999999999999999999999999999 99999876554
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=5.6e-22 Score=156.78 Aligned_cols=182 Identities=9% Similarity=-0.053 Sum_probs=163.6
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
+|..+.++..++..+...++.++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~ 135 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM 135 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH
Confidence 4556778888999999999999999999999876 599999999999999999999999999988 899999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
+|.++..+|++++|+..++++++.+|++.......+ .++...|++++|+.+|++++...|+++.++..+|.++...|+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999875544433 444456999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 216 VDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 216 ~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+++|...|+++++++|+ ++.+++.++.+...
T Consensus 216 ---~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 216 ---WEAAEGVLQEALDKDSG-HPETLINLVVLSQH 246 (291)
T ss_dssp ---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99999999999999997 88888777766554
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=9.9e-22 Score=153.29 Aligned_cols=202 Identities=13% Similarity=-0.043 Sum_probs=171.1
Q ss_pred CChhHHHHHHHHHhcCcccccccCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPD-VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
++.+.++......+..+ .++. ...++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+++
T Consensus 51 ~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 51 AKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp TCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 34455555555555431 1222 36678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc---HHHHHHHHHHH
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM---YKQAAFCYEEL 192 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 192 (263)
+|+..+++++..+|.++.++..+|...+..+++++|+..++++++.+|++..++..+|.++...|+ +++|+..|+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999999999999999999999999555566799999999999999999999999999999999998 88999999999
Q ss_pred HhhC---CCC-----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 193 ILSQ---PTV-----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 193 l~~~---p~~-----~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
++.. |+. ..++..+|.++...|+ +++|+.+|+++++++|+ +..++-++...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~-~~~a~~~l~~~ 264 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPT-NKKAIDGLKMK 264 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHC--
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcc-HHHHHHHhhhh
Confidence 9876 442 2578889999999999 99999999999999996 77666655444
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=3.8e-21 Score=150.04 Aligned_cols=191 Identities=16% Similarity=0.035 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (263)
+.+.++.....++... ...+|..+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus 20 ~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 20 QQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 3455666666665441 1124567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.+......++.+ ...|++++|+..+.+++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998766655544 666889999888888877665
Q ss_pred CC-------------------------------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 198 TV-------------------------------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 198 ~~-------------------------------------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+ +.++..+|.++...|+ +++|+.+|+++++.+|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH 247 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch
Confidence 43 4678889999999999 99999999999999985
No 46
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.90 E-value=5e-22 Score=151.30 Aligned_cols=169 Identities=12% Similarity=0.001 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH---HHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKR 137 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~ 137 (263)
+..+..+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|++++..+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 56778899999999999999999999999999764 68999999999999999999999999999999864 7888
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhcccH
Q 024712 138 RVAIAKA------------------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMY 182 (263)
Q Consensus 138 l~~~~~~------------------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~ 182 (263)
+|.++.. .|++++|+..|+++++.+|+++.++ ..+|.+++..|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 9988876 5789999999999999999997554 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 183 KQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 183 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++|+..|+++++..|+++ .++..+|.++..+|+ +++|+..++++....|+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC
Confidence 999999999999999986 679999999999999 99999999999888876
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.8e-21 Score=164.94 Aligned_cols=218 Identities=16% Similarity=0.084 Sum_probs=186.0
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712 22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (263)
Q Consensus 22 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (263)
..|+.++.......+. ......++........ ......|....++..+|.++...|++++|+..+++++.
T Consensus 254 ~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566666666666555 4444444444433211 12234677788899999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-----
Q 024712 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD----- 167 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----- 167 (263)
..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.
T Consensus 333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred -HHHHHHHHHHh---cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712 168 -AWRELAEIYVS---LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (263)
Q Consensus 168 -~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 243 (263)
++..+|.++.. .|++++|+..+++++..+|+++.++..+|.++...|+ +++|...|+++++++|+ +...+..
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~ 488 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLART-MEEKLQA 488 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSS-HHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccc-cHHHHHH
Confidence 89999999999 9999999999999999999999999999999999999 99999999999999996 5555544
Q ss_pred H
Q 024712 244 I 244 (263)
Q Consensus 244 l 244 (263)
+
T Consensus 489 ~ 489 (514)
T 2gw1_A 489 I 489 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.89 E-value=1.9e-22 Score=147.69 Aligned_cols=167 Identities=12% Similarity=0.026 Sum_probs=148.6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 334455777899999999999999999999999999999999999999999999999999999999999 8876666565
Q ss_pred HHH-HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCCC
Q 024712 141 IAK-AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVD 217 (263)
Q Consensus 141 ~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 217 (263)
+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++...|+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~-- 159 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ-- 159 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS--
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC--
Confidence 433 33455668999999999999999999999999999999999999999999999976 6699999999999999
Q ss_pred cHHHHHHHHHHhhc
Q 024712 218 NILLAKKYYASTID 231 (263)
Q Consensus 218 ~~~~A~~~~~~al~ 231 (263)
.++|...|++++.
T Consensus 160 -~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 -GNAIASKYRRQLY 172 (176)
T ss_dssp -SCHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHH
Confidence 9999999999874
No 49
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.89 E-value=3.7e-23 Score=147.56 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=123.6
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
.+|.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHH-HHHhhccCCCcchhHHH
Q 024712 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY-YASTIDLTGGKNTKALF 242 (263)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~-~~~al~~~~~~~~~~~~ 242 (263)
++|+.+|+++++++|+++.++..+|.++...|+ +++|... ++++++++|+ ++.++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~-~~~~~~ 138 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPG-SPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcC-CHHHHH
Confidence 999999999999999999999999999999999 8877665 5899999997 655544
No 50
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.89 E-value=3.6e-22 Score=138.06 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=77.3
Q ss_pred hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (263)
++|+.+..+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+|+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
|.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6666666666666666666666666666666666554
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=2.4e-21 Score=147.56 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=143.0
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
+.++..++.+|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc--chhHHHhH
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPTVP-------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK--NTKALFGI 244 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~--~~~~~~~l 244 (263)
.++...|++++|+..++++++.+|+++ .++..+|.++...|+ +++|+..|+++++++| . +..+++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTS-KKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCC-CcccHHHHHHH
Confidence 999999999999999999999999998 669999999999999 9999999999999998 4 56778877
Q ss_pred HHHHhh
Q 024712 245 CLVMFV 250 (263)
Q Consensus 245 ~~~~~~ 250 (263)
+.++..
T Consensus 160 ~~~~~~ 165 (228)
T 4i17_A 160 GVLFYN 165 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777655
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=6.8e-21 Score=151.79 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=122.6
Q ss_pred CcchHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMD-------CQCL-------DVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL 124 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 124 (263)
.|..+.+|..+|..+.. .|++ ++|+..|++++. ..|++..++..+|.++...|++++|...|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666666666666553 4665 677777777777 57777777777777777777777777777777
Q ss_pred HhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCHHH
Q 024712 125 LEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLY 202 (263)
Q Consensus 125 ~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~ 202 (263)
++..|.++. +|..+|.++...|++++|+..|+++++..|.+..+|...+.+... .|++++|+.+|+++++.+|+++.+
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 205 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 777777765 777777777777777777777777777777776666655555433 577777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
+..+|.++...|+ +++|+..|++++..
T Consensus 206 ~~~~~~~~~~~g~---~~~A~~~~~~al~~ 232 (308)
T 2ond_A 206 VLAYIDYLSHLNE---DNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 7777777777777 77777777777774
No 53
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.89 E-value=2e-21 Score=153.33 Aligned_cols=168 Identities=14% Similarity=-0.004 Sum_probs=159.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|.....+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 56777888999999999999999999999999999999999999999999999999999999999999977777777787
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCCCc
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 218 (263)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~--- 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT--- 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT---
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC---
Confidence 88889999999999999999999999999999999999999999999999999999998 8899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 024712 219 ILLAKKYYASTID 231 (263)
Q Consensus 219 ~~~A~~~~~~al~ 231 (263)
.++|...|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.2e-20 Score=160.92 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=155.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 385 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 67778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHH------HHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDA------WRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
.++...|++++|+..++++++..|.+... +..+|.++... |++++|+.+|++++..+|+++.++
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999988766433 45667888888 999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..+|.++...|+ +++|+..|+++++++|.
T Consensus 466 ~~l~~~~~~~g~---~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 466 IGLAQLKLQMEK---IDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence 999999999999 99999999999999886
No 55
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.4e-21 Score=171.53 Aligned_cols=196 Identities=14% Similarity=-0.007 Sum_probs=167.4
Q ss_pred hccCChhHHHHHHHHHhc-CcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 024712 34 LKVRRPDKVLRHGLSILN-DPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~ 112 (263)
....+.++++......+. ........+|+...++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 445566677776666651 1111224578889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
++++|+..|+++++.+|+++.++.++|.++...|++++ +..|+++++.+|++..+++++|.++...|++++|+..|+++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHhh
Q 024712 193 ILSQPTVPLYHLAYADVLYTLGG-----VDNILLAKKYYASTI 230 (263)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~g~-----~~~~~~A~~~~~~al 230 (263)
++++|++..++.++|.++...++ .+.+++|...+....
T Consensus 561 l~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 561 PPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp CTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred cccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999977554 122556665555443
No 56
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.8e-22 Score=166.77 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=171.4
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 267 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 345 (514)
T 2gw1_A 267 FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345 (514)
T ss_dssp CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHH
T ss_pred Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHH
Confidence 566 8888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHh-
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYT- 212 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~- 212 (263)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.++. ++..+|.++..
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999888855 89999999999
Q ss_pred --cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 213 --LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 213 --~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.|+ +++|+..|++++..+|+ +..+++.++.++..
T Consensus 426 ~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 426 PTVEN---FIEATNLLEKASKLDPR-SEQAKIGLAQMKLQ 461 (514)
T ss_dssp CCTTH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hhcCC---HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 999 99999999999999986 77777777776655
No 57
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.3e-21 Score=166.80 Aligned_cols=168 Identities=17% Similarity=0.065 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
..++..+|..+...|++++|+..+++++...|+ +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 446778899999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~ 223 (263)
..|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+ +++|+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~ 398 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD---FDTAI 398 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccCCC
Q 024712 224 KYYASTIDLTGG 235 (263)
Q Consensus 224 ~~~~~al~~~~~ 235 (263)
..|+++++.+|.
T Consensus 399 ~~~~~a~~~~~~ 410 (537)
T 3fp2_A 399 KQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc
Confidence 999999999875
No 58
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.88 E-value=3.4e-21 Score=165.96 Aligned_cols=164 Identities=12% Similarity=-0.049 Sum_probs=138.0
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
.|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHhhccC
Q 024712 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---GGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 157 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~~~~A~~~~~~al~~~ 233 (263)
++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++... |+ +++|...|+++++.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999 88 999999999999999
Q ss_pred CCcchhHHHhH
Q 024712 234 GGKNTKALFGI 244 (263)
Q Consensus 234 ~~~~~~~~~~l 244 (263)
|+ ....+..+
T Consensus 159 p~-~~~~~~~l 168 (568)
T 2vsy_A 159 VG-AVEPFAFL 168 (568)
T ss_dssp CC-CSCHHHHT
T ss_pred Cc-ccChHHHh
Confidence 96 54444433
No 59
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=7.2e-21 Score=131.52 Aligned_cols=120 Identities=11% Similarity=-0.031 Sum_probs=115.6
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.++.
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
.+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998764
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=6.2e-20 Score=146.26 Aligned_cols=174 Identities=9% Similarity=-0.061 Sum_probs=161.8
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR-VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
++|+...+|..++..+...|++++|+.+|+++++..|.++. ++..+|.++...|++++|...|++++...|.+..++..
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 47888899999999999999999999999999999999886 89999999999999999999999999999999888877
Q ss_pred HHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHh
Q 024712 138 RVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS---QPT-VPLYHLAYADVLYT 212 (263)
Q Consensus 138 l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~ 212 (263)
.+.+... .|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|++++.. .|+ ...+|..++..+..
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 7766544 799999999999999999999999999999999999999999999999995 553 67899999999999
Q ss_pred cCCCCcHHHHHHHHHHhhccCCC
Q 024712 213 LGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|+ ++.|...+.++++..|+
T Consensus 254 ~g~---~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 254 IGD---LASILKVEKRRFTAFRE 273 (308)
T ss_dssp HSC---HHHHHHHHHHHHHHTTT
T ss_pred cCC---HHHHHHHHHHHHHHccc
Confidence 999 99999999999999996
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=3e-20 Score=147.02 Aligned_cols=168 Identities=14% Similarity=0.041 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P 132 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 132 (263)
..+...+.++...|++++|+..|.+++...+ ..+.++..+|.++...|++++|+.+|++++.+.|.. .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566678888999999999999999999753 235688999999999999999999999999987643 3
Q ss_pred HHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----
Q 024712 133 VLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---- 201 (263)
Q Consensus 133 ~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 201 (263)
.++..+|.++... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+.+|++++.+.|.+..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788999999996 99999999999999998865 567899999999999999999999999999987643
Q ss_pred ---HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 202 ---YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 202 ---~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++..+|.++...|+ +++|+.+|+++++++|+
T Consensus 198 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 57899999999999 99999999999999996
No 62
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.86 E-value=7.5e-22 Score=140.45 Aligned_cols=115 Identities=14% Similarity=-0.044 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
-..+++++..+|+++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34556677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+++.++.++|.++..+|+ +++|+..|++++++.|+
T Consensus 102 ~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSND 136 (151)
T ss_dssp SCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 888888888888888888 88888888888888775
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.86 E-value=1.5e-20 Score=146.82 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=153.4
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---- 127 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 127 (263)
.|....++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.++++++..
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999873 566788999999999999999999999999987
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 128 ----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 128 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999998 6777889999999999999999999999999976
Q ss_pred C-------------------------------------------------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712 196 Q-------------------------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (263)
Q Consensus 196 ~-------------------------------------------------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~ 226 (263)
. |..+.++..+|.++...|+ +++|..+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~ 275 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLE 275 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 2 3345578899999999999 99999999
Q ss_pred HHhhcc
Q 024712 227 ASTIDL 232 (263)
Q Consensus 227 ~~al~~ 232 (263)
+++++.
T Consensus 276 ~~al~~ 281 (283)
T 3edt_B 276 DCASRN 281 (283)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 999876
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=1.8e-19 Score=140.12 Aligned_cols=178 Identities=11% Similarity=0.085 Sum_probs=153.4
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEA 110 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~ 110 (263)
...++.+.++.....++.. .+.+|....++..+|.+++..|++++|+..|++++..+|+ .+.+++.+|.++..
T Consensus 26 ~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 26 YNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 4566788888888887765 1112233889999999999999999999999999999885 46788999999999
Q ss_pred --------cCcHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCChhHHHHHHHHHHHhcCC-
Q 024712 111 --------KGLWAEAEKAYSSLLEDNPLDPVLH-----------------KRRVAIAKAQGNFPTAIEWLNKYLETFMA- 164 (263)
Q Consensus 111 --------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~- 164 (263)
.|++++|+..|++++...|+++.+. ..+|.++...|++++|+..|+++++.+|+
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred hcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999987655 78899999999999999999999999998
Q ss_pred --CHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHhcCC
Q 024712 165 --DHDAWRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPL---YHLAYADVLYTLGG 215 (263)
Q Consensus 165 --~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~ 215 (263)
.+.+++.+|.++... |++++|+..|+++++..|+++. +...++.++...++
T Consensus 182 ~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 182 PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 467999999999977 9999999999999999999964 55566777666666
No 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=9.9e-19 Score=146.87 Aligned_cols=210 Identities=11% Similarity=-0.045 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHhcCc--ccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 024712 37 RRPDKVLRHGLSILNDP--KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGI 106 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~ 106 (263)
++.++++......+.-. .......|....+|.++|.++...|++++|+.+++++++.. +..+.++..+|.
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 44555555444433210 11233466778889999999999999999999999998863 245677888887
Q ss_pred HHHHc--CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---
Q 024712 107 LLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS--- 178 (263)
Q Consensus 107 ~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--- 178 (263)
++... +++++|+.+|+++++.+|+++.++..++.++.. .++.++|+..++++++++|.++.++..+|..+..
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 76654 579999999999999999999999999888654 5778899999999999999999999998877654
Q ss_pred -cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 179 -LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 179 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.|++++|+.++++++..+|.++.++..+|.++...|+ +++|+..|.++++.+|+ +..+++.++.++..
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN-NAYLHCQIGCCYRA 293 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999 99999999999999996 78888877777543
No 66
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=3.2e-21 Score=137.19 Aligned_cols=116 Identities=15% Similarity=0.002 Sum_probs=105.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 165 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
++.+|+.+|.++...|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998765
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=7.1e-21 Score=148.49 Aligned_cols=159 Identities=17% Similarity=0.034 Sum_probs=145.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 73 AAMDCQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
.....|++++|+..++++++.. |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3345688999999999999974 457789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.....++.+ ...|+ +++|+..+.+
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998766655544 66688 9999999999
Q ss_pred hhccCCC
Q 024712 229 TIDLTGG 235 (263)
Q Consensus 229 al~~~~~ 235 (263)
++...|+
T Consensus 170 ~~~~~~~ 176 (275)
T 1xnf_A 170 HFEKSDK 176 (275)
T ss_dssp HHHHSCC
T ss_pred HHhcCCc
Confidence 8888775
No 68
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.9e-20 Score=154.33 Aligned_cols=207 Identities=16% Similarity=0.104 Sum_probs=148.7
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHh-----cC-------cccccccCcchHHHHHHHHHHHHH----cCChHHHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSIL-----ND-------PKKRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDC 86 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 86 (263)
.|+.++.......+.+++....++.... .. ......++|+...++..++..+.. .+++++|+.+
T Consensus 156 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6778888777777777665554443321 11 012234577777777777665544 4677788888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------------------CC
Q 024712 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-------------------GN 147 (263)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~ 147 (263)
+++++...|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.+|... +.
T Consensus 236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~ 315 (472)
T 4g1t_A 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL 315 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888777543 23
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHH-HHhcCCCCcHHHHH
Q 024712 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---YHLAYADV-LYTLGGVDNILLAK 223 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~~~~A~ 223 (263)
+++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++...|.+.. ++..+|.+ +...|+ +++|+
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ai 392 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC---EDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC---HHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC---HHHHH
Confidence 567888888888888888888888888888888888888888888887776543 34555554 346677 88888
Q ss_pred HHHHHhhcc
Q 024712 224 KYYASTIDL 232 (263)
Q Consensus 224 ~~~~~al~~ 232 (263)
.+|.+++++
T Consensus 393 ~~y~kal~i 401 (472)
T 4g1t_A 393 HHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 888777655
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=5e-20 Score=146.00 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=156.3
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 127 (263)
....|..+.++..+|..+...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999999999994 5677888999999999999999999999999987
Q ss_pred -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 128 -------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 128 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556789999999999999999999999999885 555778999999999999999999999999
Q ss_pred Hhh--------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 193 ILS--------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 193 l~~--------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
+.. .|....++..+|.++...|+ +++|+.+|+++++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGK---FKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 988 66667789999999999999 99999999999975
No 70
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=6.1e-20 Score=138.03 Aligned_cols=137 Identities=14% Similarity=0.020 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR----------------RVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
++..++..|..+...|++++|+..|++++..+|+++.++.. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999 99999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
.+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.+++..|+. ....+...|.+++..+|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ-EKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999887641 14567788888776544
No 71
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=1.4e-18 Score=135.88 Aligned_cols=175 Identities=14% Similarity=0.030 Sum_probs=136.5
Q ss_pred cchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCCH
Q 024712 61 PDVWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDP 132 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~ 132 (263)
|....++..+|.++.. .+++++|+..|+++++.. ++.++..+|.++.. .+++++|+.+|+++++. +++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence 5566777788888888 888888888888888764 67788888888888 88888888888888876 367
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712 133 VLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 133 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++. .++.++.
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 186 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCF 186 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 788888888888 888888888888888764 57778888888887 88888888888888876 3567788
Q ss_pred HHHHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 205 AYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 205 ~la~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
.+|.++.. .++ +++|+.+|+++++..| ..+++.+..++.
T Consensus 187 ~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~~---~~a~~~l~~~~~ 229 (273)
T 1ouv_A 187 NAGNMYHHGEGATKN---FKEALARYSKACELEN---GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHHHTCSSCCC---HHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcc---HHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 88888888 788 8888888888888755 344454544443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=146.22 Aligned_cols=197 Identities=18% Similarity=0.150 Sum_probs=165.9
Q ss_pred cCChhHHHHHHHHHhcCcccc-cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKR-SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGI 106 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~ 106 (263)
.++.+.++......+...... ....|....++..+|.++...|++++|+..+++++... |....++..+|.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445666666666655421111 11256778889999999999999999999999999873 556788899999
Q ss_pred HHHHcCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHH
Q 024712 107 LLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWR 170 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~ 170 (263)
++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.. .|....++.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999874 445578899999999999999999999999998 677778899
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhh-------------------------------------------------CCCCHH
Q 024712 171 ELAEIYVSLQMYKQAAFCYEELILS-------------------------------------------------QPTVPL 201 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p~~~~ 201 (263)
.+|.++...|++++|+.++++++.. .|..+.
T Consensus 200 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (311)
T 3nf1_A 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT 279 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH
Confidence 9999999999999999999999974 355567
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++..+|.++...|+ +++|..+|++++++.|.
T Consensus 280 ~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 280 TLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence 89999999999999 99999999999988763
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=3.7e-19 Score=130.23 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=146.2
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.++.+.++......+.. .|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 21 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDA-------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HTCHHHHHHHHTTTCCT-------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred hcCHHHHHHHHHHHHHh-------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Confidence 34566666666555443 67778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++.
T Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHH
Q 024712 196 QPTVPL 201 (263)
Q Consensus 196 ~p~~~~ 201 (263)
.|+++.
T Consensus 174 ~~~~~~ 179 (186)
T 3as5_A 174 DEGASV 179 (186)
T ss_dssp HHCCCG
T ss_pred CCCchh
Confidence 887653
No 74
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=4.4e-18 Score=135.11 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=183.2
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhC
Q 024712 25 WEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQF 94 (263)
Q Consensus 25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~ 94 (263)
...+...+..+ .-.++++.....++.. +|+...+|...+.++...+. +++++.++..++..+
T Consensus 33 ~~~~~~~~~~~-e~s~eaL~~t~~~L~~-------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 33 TQAVFQKRQAG-ELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHTT-CCSHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 33344333332 3456678877777766 89999999988888776655 689999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
|.+..+|...+.++...+. +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999994 9999999999999999999999999999999998 599999999999999999999999
Q ss_pred HHHHHHhc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCC-------CcHHHHHHHHHHh
Q 024712 172 LAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGV-------DNILLAKKYYAST 229 (263)
Q Consensus 172 la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~-------~~~~~A~~~~~~a 229 (263)
.+.++... +.++++++++.+++..+|++..+|..+..++... |.. +.++++++.+.++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 99998877 6799999999999999999999998776666655 210 1289999999999
Q ss_pred hccCCCcchhHHHhHHHHHh
Q 024712 230 IDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 230 l~~~~~~~~~~~~~l~~~~~ 249 (263)
+++.|+ +.+.+.++++...
T Consensus 265 le~~pd-~~w~l~~~~~~~~ 283 (331)
T 3dss_A 265 QELEPE-NKWCLLTIILLMR 283 (331)
T ss_dssp HHHCTT-CHHHHHHHHHHHH
T ss_pred HhhCcc-cchHHHHHHHHHH
Confidence 999997 7787777766543
No 75
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=8.5e-18 Score=131.34 Aligned_cols=186 Identities=10% Similarity=-0.020 Sum_probs=162.9
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA- 110 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~- 110 (263)
..+.+.++......+.. ..+.++..+|.++.. .+++++|+..|+++++. +++.++..+|.++..
T Consensus 55 ~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL---------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDG 123 (273)
T ss_dssp CCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcC
Confidence 34455555555555443 357788899999999 99999999999999986 488999999999999
Q ss_pred ---cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q 024712 111 ---KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----L 179 (263)
Q Consensus 111 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~ 179 (263)
.+++++|+.+|+++++.+ ++.++..+|.++.. .+++++|+.+++++++. .++.+++.+|.++.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence 999999999999999975 67889999999999 99999999999999987 468999999999999 9
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
+++++|+.+|+++++..| +.++..+|.++.. .++ +++|+.+|++++++.|+ .....+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~---~~~A~~~~~~a~~~~~~-~a~~~l 260 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN---EKQAIENFKKGCKLGAK-GACDIL 260 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC---STTHHHHHHHHHHHTCH-HHHHHH
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHHcCCH-HHHHHH
Confidence 999999999999999866 8899999999999 888 99999999999999885 444443
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.83 E-value=4.7e-20 Score=131.06 Aligned_cols=116 Identities=13% Similarity=-0.016 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 024712 86 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (263)
Q Consensus 86 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (263)
.+++++...|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
+.+++.+|.++...|++++|+.+|++++++.|+++.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 555555555555555555555555555555555443
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=8.5e-18 Score=132.67 Aligned_cols=214 Identities=11% Similarity=0.072 Sum_probs=184.7
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCcHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ--CLDVAKDCIKVLQKQFPESKRV 100 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~ 100 (263)
++..+++..+..+. ..++++.....++.. +|+...+|...+.++...+ ++++++..+..++..+|++..+
T Consensus 34 ~~~~~~~a~~~~~e-~s~~aL~~t~~~L~~-------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 34 QIMGLLLALMKAEE-YSERALHITELGINE-------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp HHHHHHHHHHHTTC-CSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 45666776666653 345677777666655 8999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHH----HHc---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHhcCCCHHHHHH
Q 024712 101 GRLEGILL----EAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--TAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 101 ~~~~a~~~----~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
|..++.++ ... +++++++.++.++++.+|.+..+|...+.++...|.++ +++..+.++++.+|.+..+|..
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~ 185 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999 666 78999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhccC---CCcchhHH
Q 024712 172 LAEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDLT---GGKNTKAL 241 (263)
Q Consensus 172 la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~-A~~~~~~al~~~---~~~~~~~~ 241 (263)
.+.+....+. ++++++++.+++..+|++..+|..++.++...|+ ..+ ...++.+++.++ |. ...++
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~-s~~al 261 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVT-SSFAL 261 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEES-CHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCC-CHHHH
Confidence 9999999987 9999999999999999999999999999999887 444 556777777765 42 55555
Q ss_pred HhHHHHH
Q 024712 242 FGICLVM 248 (263)
Q Consensus 242 ~~l~~~~ 248 (263)
..++-++
T Consensus 262 ~~la~~~ 268 (306)
T 3dra_A 262 ETLAKIY 268 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 78
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.82 E-value=2.7e-20 Score=150.11 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=143.0
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 024712 76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVA 140 (263)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~ 140 (263)
..+++++|+..++.++...|..+.++..+|.+++..|++++|+..|++++..+|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888889999999999999999999999999999999999998 589999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|+ ++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 98
Q ss_pred HH-HHHHHHhhcc
Q 024712 221 LA-KKYYASTIDL 232 (263)
Q Consensus 221 ~A-~~~~~~al~~ 232 (263)
+| ...|++++..
T Consensus 282 ~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 282 AREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 88 5567776644
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.82 E-value=1.6e-18 Score=120.04 Aligned_cols=132 Identities=23% Similarity=0.265 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
|++++|+..+++++...|.++.++..+|.++...|+ +++|...|.+++..+|
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDP 134 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCC
Confidence 777777777777777777777777777777777777 7777777777776665
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=2e-19 Score=142.23 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=147.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCCCC---
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD--- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~--- 131 (263)
....++.++|.++...|++++|+.+++++++..|.. ..++..+|.++... |++++|+.+|++++...|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 356789999999999999999999999999987632 45788999999996 99999999999999987754
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
..++..+|.++..+|++++|+..|+++++..|.+.. ++..+|.++...|++++|+.+|++++.++|....
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 457889999999999999999999999999987653 6789999999999999999999999999998765
Q ss_pred H-----HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhH
Q 024712 202 Y-----HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGI 244 (263)
Q Consensus 202 ~-----~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l 244 (263)
. +..++..+. .++.+++++|+..|.+++.++|. ....+..+
T Consensus 235 ~~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~~~~~l~~~-~~~~~~~~ 280 (292)
T 1qqe_A 235 SRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNFMRLDKW-KITILNKI 280 (292)
T ss_dssp ---HHHHHHHHHHHH-TTCTTTHHHHHHHHTTSSCCCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCccHHH-HHHHHHHH
Confidence 3 445566553 34444499999999999999885 44444433
No 81
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.82 E-value=1.2e-19 Score=129.00 Aligned_cols=115 Identities=13% Similarity=0.013 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
-..|++++..+|.+...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+++.++..+|.++...|+ +++|+..|+++++++|+
T Consensus 87 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIAN 121 (148)
T ss_dssp TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC
Confidence 999999999999999999 99999999999999886
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.82 E-value=3.8e-18 Score=118.16 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
.++..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++..+|.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
No 83
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.81 E-value=1.3e-19 Score=127.83 Aligned_cols=112 Identities=14% Similarity=0.042 Sum_probs=51.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712 89 VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (263)
Q Consensus 89 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (263)
+++...|++...++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
++.+|.++...|++++|+.+|++++.++|+++
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 44444444444444444444444444444443
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.81 E-value=1.6e-18 Score=149.24 Aligned_cols=150 Identities=9% Similarity=-0.047 Sum_probs=141.6
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
..+|+...++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
+|.++...|++++|+..++++++.+|++..++..+|.++... |++++|+..++++++.+|.+...+..++
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999999999999999999999999999999999999999 9999999999999999999877776666
No 85
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.6e-18 Score=118.47 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 024712 177 VSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLY 211 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~ 211 (263)
...|++++|+..|++++.++ |.+..++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 66666666666666666666 666666666655543
No 86
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=7.4e-19 Score=128.54 Aligned_cols=153 Identities=11% Similarity=-0.014 Sum_probs=130.4
Q ss_pred CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
+|......+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3444556788999999999999999999999999999999999999999999999999999999999999 887776666
Q ss_pred HHHH-hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhh
Q 024712 174 EIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFV 250 (263)
Q Consensus 174 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~ 250 (263)
.+.. ..+...+|+..+++++..+|+++.++..+|.++...|+ +++|+..|+++++.+|+ .+..++..++.++..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5543 23344568999999999999999999999999999999 99999999999999986 345566666666544
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.80 E-value=1.9e-18 Score=126.31 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=104.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--hHH
Q 024712 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNF--PTA 151 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~--~~A 151 (263)
...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567888888888888888888888888888888888888888888888888888888888888888 7788887 888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
+..++++++.+|.++.+++.+|.++...|++++|+..|++++..+|.++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888888888888888888888888888888888888888888775443
No 88
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.80 E-value=9e-19 Score=123.50 Aligned_cols=114 Identities=17% Similarity=0.042 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 119 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
..|++++..+|++...++.+|..++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++.++..+|.++...|+ +++|+..|+++++++|+
T Consensus 85 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD---LDGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 99999999999999999 99999999999999886
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=1.8e-18 Score=141.71 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=145.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh---CC---CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQ---FP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PV 133 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~---~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~ 133 (263)
+..+|..+...|++++|+..+++++.. .+ ..+.++..+|.++...|++++|+..+++++...+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344899999999999999999999986 23 355788999999999999999999999999874332 35
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhcccHHHHHHHHHHHHh-----hC-CCCHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------DAWRELAEIYVSLQMYKQAAFCYEELIL-----SQ-PTVPL 201 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~ 201 (263)
++..+|.++...|++++|+..++++++..|... .++.++|.+|...|++++|+.++++++. .+ |..+.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 889999999999999999999999998865442 5889999999999999999999999998 45 77788
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
++..+|.++...|+ +++|..++++++++.+
T Consensus 266 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 266 AYFLITQIHYKLGK---IDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999998854
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.79 E-value=5.8e-18 Score=133.50 Aligned_cols=156 Identities=7% Similarity=-0.077 Sum_probs=143.0
Q ss_pred HhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712 92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
...|++...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999977777777
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhh
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFV 250 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~ 250 (263)
.+..+...++.++|+..+++++..+|+++.++..+|.++...|+ +++|+..|.++++.+|+ .+..++..+..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999 99999999999999997 226677766666554
No 91
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=1.7e-18 Score=142.88 Aligned_cols=172 Identities=12% Similarity=-0.006 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CCC
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPL 130 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~ 130 (263)
+.....+..+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45566777899999999999999999999999999876 57889999999999999999999999987 455
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhccc-----------------HHHHHH
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQM-----------------YKQAAF 187 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 187 (263)
...++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6678999999999999999999999999988 56667789999999999999 999999
Q ss_pred HHHHHHhhC------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 188 CYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 188 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++++++.+. +....++..+|.++...|+ +++|+.+|++++++.+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD---FQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHh
Confidence 999998764 2334588899999999999 99999999999988764
No 92
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.2e-17 Score=142.73 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=158.5
Q ss_pred CcchHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMD-------CQCLD-------VAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL 124 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 124 (263)
.|..+.+|...+..+.. .|+++ +|+.++++++. ..|+++.++..++.++...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 67778888888888876 79987 99999999997 78999999999999999999999999999999
Q ss_pred HhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712 125 LEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLY 202 (263)
Q Consensus 125 ~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (263)
++..|.++ .+|..++.++...|++++|...|+++++..|.+...+...+.+ +...|++++|..+|+++++..|+++.+
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence 99999986 6999999999999999999999999999999888877776665 346899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+..++.++...|+ .++|...|++++..+|.
T Consensus 428 ~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 428 VLAYIDYLSHLNE---DNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHTTTTC---HHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCCC---HhhHHHHHHHHHhccCC
Confidence 9999999999999 99999999999998653
No 93
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.79 E-value=3.1e-17 Score=129.65 Aligned_cols=169 Identities=9% Similarity=-0.014 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-----
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----- 131 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----- 131 (263)
....+...+..++..|++++|...+++++...+..+. .+..+|.++...|++++|+..+++++...+..
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3444555678889999999999999999998776554 23357888888899999999999999864432
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----
Q 024712 132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---- 199 (263)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 199 (263)
..++..+|.++...|++++|+.+++++++.. +....+++++|.+|..+|++++|+.++++++++.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 2378999999999999999999999999532 2234578999999999999999999999999876433
Q ss_pred --HHHHHHHHHHHHhcC-CCCcHHHHHHHHHHhhccCC
Q 024712 200 --PLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 200 --~~~~~~la~~~~~~g-~~~~~~~A~~~~~~al~~~~ 234 (263)
..++..+|.++...| . +++|+.+|++++.+..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~---~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYE---EAEIEDAYKKASFFFD 268 (293)
T ss_dssp THHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHH
Confidence 678999999999999 5 6999999999997743
No 94
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.79 E-value=3e-18 Score=134.69 Aligned_cols=167 Identities=8% Similarity=-0.129 Sum_probs=141.3
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCH-----HHHH--------------------------HHHHHHHhcccHHHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADH-----DAWR--------------------------ELAEIYVSLQMYKQAAFCY 189 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~--------------------------~la~~~~~~g~~~~A~~~~ 189 (263)
++...|++++|+..|+++++.+|++. .++. .++.+ ..|++++|++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 99999999999999999999988652 1111 12222 357778888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhcc
Q 024712 190 EELILSQPTVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~ 232 (263)
+++++.+|.+......++.++... +. +++|...|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKY---MADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHH---HHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHH---HHHHHHHHHhhhcc
Confidence 888888887777777777666665 55 77788888877664
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.79 E-value=2.2e-17 Score=124.09 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
..+..+|..+...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 345566777777777777777776664 22 556667777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 145 QGNFPTAIEWLNKYLETFMADH----------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.|++++|+..++++++..|.+. .+++.+|.++...|++++|+..|++++..+|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7777777777777777665554 666777777777777777777777777776664
No 96
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.79 E-value=9.4e-18 Score=126.09 Aligned_cols=131 Identities=15% Similarity=0.058 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
..++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 456788999999999999999999996 33 688999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 179 LQMYKQAAFCYEELILSQPTVP----------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|++++|+..|++++...|.+. .++..+|.++...|+ +++|+..|+++++++|+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcc
Confidence 9999999999999999888877 899999999999999 99999999999999996
No 97
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.79 E-value=6.4e-17 Score=127.83 Aligned_cols=170 Identities=9% Similarity=0.000 Sum_probs=144.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC----
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---- 131 (263)
.....+...+..++..|++++|+..+.++++..|... ..+..+|.++...|++++|+..+++++...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3445566778889999999999999999999877543 345678888999999999999999999865443
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----
Q 024712 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYL---ETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPT---- 198 (263)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 198 (263)
..++..+|.++...|++++|+.++++++ +..|.+. .+++++|.+|..+|++++|+.++++++.+.+.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 4588999999999999999999999999 4566643 68899999999999999999999999987542
Q ss_pred --CHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhccCC
Q 024712 199 --VPLYHLAYADVLYTLGGVDNILLA-KKYYASTIDLTG 234 (263)
Q Consensus 199 --~~~~~~~la~~~~~~g~~~~~~~A-~~~~~~al~~~~ 234 (263)
...++.++|.++...|+ +++| ..+|++++.+..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHH
Confidence 16789999999999999 9999 888999987643
No 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.79 E-value=4.2e-19 Score=132.29 Aligned_cols=155 Identities=14% Similarity=0.017 Sum_probs=122.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----------------HHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----------------VLHKR 137 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~ 137 (263)
....|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++ .++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34456777777777666665566777888889999999999999999999999888876 78899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCC
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 217 (263)
+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-- 171 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE-- 171 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cHHHHH-HHHHHhhc
Q 024712 218 NILLAK-KYYASTID 231 (263)
Q Consensus 218 ~~~~A~-~~~~~al~ 231 (263)
..++. ..|.+.+.
T Consensus 172 -~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 172 -ARKKDKLTFGGMFD 185 (198)
T ss_dssp -HHC-----------
T ss_pred -HHHHHHHHHHHHhc
Confidence 77776 44544443
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=1.3e-18 Score=135.74 Aligned_cols=155 Identities=13% Similarity=0.113 Sum_probs=137.8
Q ss_pred HHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 024712 75 MDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRR 138 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l 138 (263)
...|++++|+.+++++++. .|..+.++..+|.++...|++++|+..+++++.. +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888888888874 2566788999999999999999999999999987 35556789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLY 202 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 202 (263)
|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+.++++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999988 4666788999999999999999999999999998 6666778
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
+..+|.++...|+ +++|+.+|++++++
T Consensus 172 ~~~la~~~~~~g~---~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGK---YQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 9999999999999 99999999999986
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.79 E-value=5.1e-17 Score=128.21 Aligned_cols=194 Identities=8% Similarity=0.003 Sum_probs=169.3
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAA----MDC---QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA 110 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~ 110 (263)
..++.+.....++.. +|....+|...+.++ ... +++++++.++.++++.+|.+..+|...+.+...
T Consensus 84 ~~~eeL~~~~~~L~~-------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~ 156 (306)
T 3dra_A 84 NLYDELDWCEEIALD-------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT 156 (306)
T ss_dssp CHHHHHHHHHHHHHH-------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444455544444433 888889999888887 666 789999999999999999999999999999999
Q ss_pred cCcHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 111 KGLWA--EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 111 ~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
.|.++ ++++++.++++.+|.+..+|...+.++...|. +++++.++.+++..+|.+..+|+.++.++...|+.
T Consensus 157 l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence 99998 99999999999999999999999999999887 89999999999999999999999999999999885
Q ss_pred HH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-cCCCcchhHHH
Q 024712 183 KQ-AAFCYEELILSQ---PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID-LTGGKNTKALF 242 (263)
Q Consensus 183 ~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~-~~~~~~~~~~~ 242 (263)
.. ...++.+++.++ |.++.++..++.++...|+ .++|++.|..+.+ .+|. ....|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~---~~~A~~~~~~l~~~~Dpi-r~~yW~ 297 (306)
T 3dra_A 237 ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK---YNESRTVYDLLKSKYNPI-RSNFWD 297 (306)
T ss_dssp GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCGG-GHHHHH
T ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhccChH-HHHHHH
Confidence 55 556777777776 8899999999999999999 9999999999986 7885 444444
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=4e-17 Score=124.07 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=138.6
Q ss_pred ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHH-
Q 024712 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR---VGRLEGILLEA- 110 (263)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~- 110 (263)
..++.+.++.....++.. .+.+|....++..+|.++...|++++|+..|+++++.+|+++. +++.+|.++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHTCHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 345667777777776654 1223445678999999999999999999999999999998764 78888988876
Q ss_pred -----------------cCcHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCChhHHHHHHH
Q 024712 111 -----------------KGLWAEAEKAYSSLLEDNPLDPVLH-----------------KRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 111 -----------------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 156 (263)
.|++++|+..|+++++..|+++.+. ..+|.++...|++++|+..|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 171 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE 171 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5799999999999999999987543 567889999999999999999
Q ss_pred HHHHhcCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 157 KYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 157 ~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
++++.+|+++ .+++.+|.++..+|++++|+..++.+....|++.
T Consensus 172 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 172 GMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999986 6799999999999999999999999999888753
No 102
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.78 E-value=2.1e-18 Score=142.30 Aligned_cols=189 Identities=16% Similarity=0.067 Sum_probs=132.4
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPD----VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEG 105 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a 105 (263)
.++.+.++......+.. .|+ ...++..+|.++...|++++|+..++++++. .|....++..+|
T Consensus 61 ~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp TTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 34555666555555443 222 2356777788888888888888888877776 345566777788
Q ss_pred HHHHHcCcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHhc
Q 024712 106 ILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQGN-----------------FPTAIEWLNKYLETF 162 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~l~~~ 162 (263)
.++...|++++|+..+++++.. .|....++..+|.++...|+ +++|+..++++++..
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887776 34445577777888888887 777777777777653
Q ss_pred ------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 163 ------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 163 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
+....++..+|.++...|++++|+.++++++.+.|.... ++..+|.++...|+ +++|+.+|++++
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 290 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ---FEDAAEHYKRTL 290 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHH
Confidence 223456777788888888888888888887776654322 67777888888888 888888888777
Q ss_pred ccCC
Q 024712 231 DLTG 234 (263)
Q Consensus 231 ~~~~ 234 (263)
.+.+
T Consensus 291 ~~~~ 294 (411)
T 4a1s_A 291 ALAV 294 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 103
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=141.65 Aligned_cols=166 Identities=17% Similarity=0.116 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P 132 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 132 (263)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+..+++++...|.. .
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 344455555555555555555555554431 2233444555555555555555555555555543321 2
Q ss_pred HHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcccHHHHH
Q 024712 133 VLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~ 186 (263)
.++..+|.++...|+ +++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 244555555555555 55555555555544 2222334555555555555555555
Q ss_pred HHHHHHHhhCCCCHH------HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 187 FCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 187 ~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
.++++++.+.|.... ++..+|.++...|+ +++|+.+|++++.+.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Confidence 555555544332221 45555555555555 555555555555443
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.78 E-value=2e-17 Score=119.09 Aligned_cols=130 Identities=14% Similarity=0.045 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 179 LQMYKQAAFCYEELILSQPTVPLYHLAY--ADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
.|++++|+.+|++++..+|.++.++..+ +..+...|+ +++|+..+.++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHH
Confidence 6666666666666666666665555333 333555566 6666666665543
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.78 E-value=4.7e-17 Score=117.13 Aligned_cols=134 Identities=13% Similarity=-0.033 Sum_probs=124.4
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
.....+..+|..++..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcccHHHHHHHHHHHHhh
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+...|++++|+..++++++.+|.+..++..++ ..+...|++++|+..+.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999999999885554 4488899999999999887654
No 106
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-17 Score=115.80 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
++..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
...|++++|+.++++++..+|.+..++..++.++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555554443
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=3.8e-18 Score=135.86 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--C---
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D--- 131 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~--- 131 (263)
-...+...+.++...|++++|+..+.++++..+. ...++..+|.++...|++++|+.+|++++.+.+. +
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3446677788899999999999999999998652 2457889999999999999999999999987432 2
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----
Q 024712 132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----- 199 (263)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 199 (263)
..++.++|.++.. |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++.+.|.+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 3578899999998 99999999999999988754 5788999999999999999999999999986644
Q ss_pred -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 200 -~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..++..+|.++...|+ +++|+.+|++++ ++|.
T Consensus 194 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCC
Confidence 2377889999999999 999999999999 9886
No 108
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=1.4e-17 Score=136.42 Aligned_cols=195 Identities=8% Similarity=-0.051 Sum_probs=147.6
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------cHHHHHHHHH
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-------SKRVGRLEGI 106 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~~a~ 106 (263)
...++.+.++......+..... ...++....++..+|.++...|++++|+..++++++..+. ...++..+|.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4456677777777776654111 1112346788999999999999999999999999998543 3457889999
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHH-----hc-CCCHHHHHHHHH
Q 024712 107 LLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TF-MADHDAWRELAE 174 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~~la~ 174 (263)
++...|++++|+..+++++...+... .++.++|.++...|++++|+.+++++++ .+ |..+.++..+|.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 99999999999999999998754332 4889999999999999999999999999 45 777889999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 175 IYVSLQMYKQAAFCYEELILSQP-----TVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
++...|++++|+.++++++.+.+ .....+..+|.++...|+...+++|+..+++.
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999998742 22222344555555555422233444444443
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.78 E-value=2.6e-17 Score=124.02 Aligned_cols=167 Identities=11% Similarity=-0.117 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----cHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
..+.++..+|..+...+++++|+..|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 45778888999999999999999999999874 688999999999998 7 99999999999975 678999999
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 138 RVAIAKA----QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 138 l~~~~~~----~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
+|.++.. .+++++|+.+|+++++..|. ++.+++.||.+|.. .+++++|+.+|+++++. |.++.++..+|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 9999988 88999999999999998873 48999999999999 88999999999999998 77788999999
Q ss_pred HHHHhc-C--CCCcHHHHHHHHHHhhccCC
Q 024712 208 DVLYTL-G--GVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 208 ~~~~~~-g--~~~~~~~A~~~~~~al~~~~ 234 (263)
.+|... | ...++++|+.+|+++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999875 3 12229999999999998854
No 110
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.77 E-value=1e-17 Score=122.40 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=116.6
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcccH--HH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMY--KQ 184 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~--~~ 184 (263)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|+.++++++..+|+++.++..+|.++...|+ +++|+..|+++++++|+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999 99999999999999997
No 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.1e-17 Score=112.99 Aligned_cols=118 Identities=13% Similarity=-0.037 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHh
Q 024712 141 IAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVS 178 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~ 178 (263)
++...|++++|+..++++++.+ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999998888877654
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.77 E-value=1.2e-17 Score=115.09 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=87.3
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
|.++..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
++...|++++|+.++++++..+|.++.++..+|.++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777776665
No 113
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=8.7e-18 Score=137.95 Aligned_cols=171 Identities=13% Similarity=-0.038 Sum_probs=150.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CCCC
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLD 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~ 131 (263)
.....+..+|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4566778899999999999999999999999999874 57889999999999999999999999876 2344
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhccc--------------------HHHH
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQA 185 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 185 (263)
..++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 5688999999999999999999999999987654 4588999999999999 9999
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 186 AFCYEELILS------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 186 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+..+++++.+ .|....++..+|.++...|+ +++|+.+|++++++.|.
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHh
Confidence 9999999876 23335578999999999999 99999999999988654
No 114
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.77 E-value=1.4e-17 Score=120.19 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=77.8
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 175 (263)
.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.+|+.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44556666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
+...|++++|+.+|++++.++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 77777777777777777777776666544444
No 115
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=5.6e-18 Score=135.21 Aligned_cols=165 Identities=17% Similarity=0.112 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P 132 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 132 (263)
.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++...|.. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 34444555555555555555555554443 12223344445555555555555555555554432221 1
Q ss_pred HHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcccHHHHH
Q 024712 133 VLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~ 186 (263)
.++..+|.++...|+ +++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 244445555555555 45555555444443 1122234444555555555555555
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 187 FCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 187 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
.++++++...+.. ..++..+|.++...|+ +++|..++++++.+
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 5555554443221 1144445555555555 55555555555444
No 116
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=1.8e-17 Score=132.25 Aligned_cols=169 Identities=14% Similarity=-0.043 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CCCCHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPV 133 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~ 133 (263)
...+...|..+...|++++|+..++++++..|+++ .++..+|.++...|++++|+..+++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44566789999999999999999999999999874 67889999999999999999999999876 344467
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhccc--------------------HHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAAF 187 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 187 (263)
++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 88999999999999999999999999886654 3488999999999999 999999
Q ss_pred HHHHHHhhC------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 188 CYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 188 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+++++... +....++..+|.++...|+ +++|+.++++++++.+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHh
Confidence 999998762 3335588999999999999 99999999999988654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6.7e-18 Score=144.66 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=176.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhC
Q 024712 25 WEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQF 94 (263)
Q Consensus 25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~ 94 (263)
..++...+..+ ...++++.....++.. +|+...+|...+.++...|+ +++++..+++++..+
T Consensus 32 ~~~~~~~~~~~-~~~eeal~~~~~~l~~-------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~ 103 (567)
T 1dce_A 32 TQAVFQKRQAG-ELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103 (567)
T ss_dssp HHHHHHHHHTT-CCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence 44444444333 3456667777776655 89999999999999988888 999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
|++..+|..++.++...+ +++++++++.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 999999999999999999 7799999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHhc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH------------HHHH
Q 024712 172 LAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL------------AKKY 225 (263)
Q Consensus 172 la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~------------A~~~ 225 (263)
.+.++... +.++++++++.+++.++|++..+|..++.++...++ +++ |+..
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~ 260 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP---HDVLCCVHVSREEACLSVC 260 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC---CSCEEEEEEETTTTEEEEE
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC---ccceeeeeeccCCceEEEE
Confidence 99998874 778999999999999999999999999999999888 555 5666
Q ss_pred HHHhhccCCC
Q 024712 226 YASTIDLTGG 235 (263)
Q Consensus 226 ~~~al~~~~~ 235 (263)
|.+++.++|.
T Consensus 261 f~~~i~~~~~ 270 (567)
T 1dce_A 261 FSRPLTVGSR 270 (567)
T ss_dssp EEEEECTTBT
T ss_pred eccceecccc
Confidence 7888887764
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=2.1e-16 Score=126.01 Aligned_cols=187 Identities=11% Similarity=0.017 Sum_probs=164.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.|+...++..+.......+..++|+.++.+++..+|++..+|..++.++...| .+++++.++..++..+|.+..+|...
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44445555555555555566679999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHc-C-ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH--------HHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712 139 VAIAKAQ-G-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--------QAAFCYEELILSQPTVPLYHLAYAD 208 (263)
Q Consensus 139 ~~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~ 208 (263)
+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++ ++++++.++++.+|.|..+|...+.
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999988 8 8999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred HHHhcCCC----CcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 209 VLYTLGGV----DNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 209 ~~~~~g~~----~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
++...+.. ..++++++++.+++..+|+ +..+|+.+.-.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~L 251 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGF 251 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99988751 1268999999999999997 77777544333
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=5.1e-17 Score=130.89 Aligned_cols=136 Identities=13% Similarity=-0.031 Sum_probs=128.2
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---------------KRVGRLEGILLEAKGLWAEAEKAYSS 123 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 123 (263)
..|....++..+|..++..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356678889999999999999999999999999999988 68999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHH-HHHHHHHHh
Q 024712 124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA-AFCYEELIL 194 (263)
Q Consensus 124 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 194 (263)
++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| ...|.+++.
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 556777664
No 120
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4e-16 Score=133.23 Aligned_cols=174 Identities=9% Similarity=-0.061 Sum_probs=158.8
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
..|+...++..++..+...|++++|..+|+++++..|.++ .++..++.++.+.|++++|...|++++...|.....+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 4788899999999999999999999999999999999875 689999999999999999999999999998888777766
Q ss_pred HHHHH-HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHh
Q 024712 138 RVAIA-KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----YHLAYADVLYT 212 (263)
Q Consensus 138 l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~ 212 (263)
.+.+. ...|++++|...|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++. +|.........
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 66553 46899999999999999999999999999999999999999999999999998876654 78888888888
Q ss_pred cCCCCcHHHHHHHHHHhhccCCC
Q 024712 213 LGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|+ .+.+...+.++++..|+
T Consensus 476 ~G~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 476 IGD---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp SSC---HHHHHHHHHHHHHHTHH
T ss_pred cCC---HHHHHHHHHHHHHHCch
Confidence 999 99999999999999884
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.76 E-value=4.6e-17 Score=112.13 Aligned_cols=125 Identities=11% Similarity=-0.033 Sum_probs=118.9
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
..+|.....+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
+|.++...|++++|+..++++++.+|.++.++..+|.++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988875
No 122
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=3.6e-17 Score=133.85 Aligned_cols=167 Identities=11% Similarity=-0.054 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------CH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DP 132 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~ 132 (263)
.+..+|..+...|++++|+..+++++...+ ..+.++..+|.++...|++++|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 566789999999999999999999998643 34568889999999999999999999999986432 13
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----hCCCCHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQPTVPL 201 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 201 (263)
.++..+|.++...|++++|+..++++++..+. ...++.++|.++...|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57889999999999999999999999987432 245788999999999999999999999999 7787788
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++..+|.++...|+ +++|..++++++++.+.
T Consensus 263 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 263 VLFGLSWTLCKAGQ---TQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999988553
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-17 Score=112.04 Aligned_cols=125 Identities=13% Similarity=0.030 Sum_probs=118.8
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
....|.....+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 34466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
.+|.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999987764
No 124
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=5.3e-16 Score=123.17 Aligned_cols=170 Identities=12% Similarity=0.021 Sum_probs=153.4
Q ss_pred HHHHcCChH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 73 AAMDCQCLD-VAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 73 ~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
.....|+++ +|+..+..++..+|++..+|...+.++...+. +++++.++..++..+|.++.+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334567776 89999999999999999999999999988776 7899999999999999999999999999
Q ss_pred HHHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC--
Q 024712 142 AKAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV-- 216 (263)
Q Consensus 142 ~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-- 216 (263)
+...|+ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|...+.++...+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 999994 8999999999999999999999999999999998 69999999999999999999999999999887210
Q ss_pred ---------CcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712 217 ---------DNILLAKKYYASTIDLTGGKNTKALFG 243 (263)
Q Consensus 217 ---------~~~~~A~~~~~~al~~~~~~~~~~~~~ 243 (263)
+.++++++++.+++..+|+ +..+|+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y 232 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFY 232 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 1289999999999999997 7777753
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.75 E-value=3.8e-17 Score=112.88 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWR 170 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~ 170 (263)
+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|.+. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344556666666666666666666666666666666666666666666666666666666666655442 3455
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 171 ELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
.+|.++...|++++|+.+|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5666666666666666666666665553
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=2.2e-16 Score=135.33 Aligned_cols=174 Identities=11% Similarity=0.017 Sum_probs=156.3
Q ss_pred HHHcCCh-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 74 AMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 74 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....|++ ++|+..+.+++..+|++..+|..++.++...|+ +++++.++++++..+|+++.+|...+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445554 578999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC---
Q 024712 143 KAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV--- 216 (263)
Q Consensus 143 ~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--- 216 (263)
...| ++++++..++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|...+.++...+..
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 6699999999999999999999999999999999 999999999999999999999999999999886221
Q ss_pred --------CcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 217 --------DNILLAKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 217 --------~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
+.+++|++++.+++.++|+ +..+|+.+....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll 236 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 236 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHH
Confidence 2289999999999999997 666666554443
No 127
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.75 E-value=1.9e-18 Score=144.91 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=134.1
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAI 141 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~ 141 (263)
.+++++|+..++..+...|..+..+..+|..++..|+|++|+..|++++..+|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888889999999999999999999999999999999998 6899999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
+..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|+ +++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 877
Q ss_pred HHH-HHHHhhc
Q 024712 222 AKK-YYASTID 231 (263)
Q Consensus 222 A~~-~~~~al~ 231 (263)
|.. .|.+.+.
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 764 4444443
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.75 E-value=2e-16 Score=107.92 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 177 (263)
..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
..|++++|+.++++++..+|.++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777777777777777766544
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.75 E-value=7.9e-17 Score=116.23 Aligned_cols=119 Identities=13% Similarity=-0.093 Sum_probs=111.7
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
..+.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 177 (263)
|.++...|++++|+..|+++++++|++..+|+..+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999987776665543
No 130
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=2.4e-16 Score=128.97 Aligned_cols=163 Identities=9% Similarity=-0.127 Sum_probs=135.2
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------cHHHHHHHHH
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-------SKRVGRLEGI 106 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~~a~ 106 (263)
...++.+.++......+..... ....+....++..+|.++...|+++.|+..++++++..+. ...++..+|.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4456677777777666544211 1223457788999999999999999999999999987542 2456789999
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCC---C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hcCCCHHHHHHHHHH
Q 024712 107 LLEAKGLWAEAEKAYSSLLEDNP---L---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TFMADHDAWRELAEI 175 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~p---~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~la~~ 175 (263)
++...|++++|+..+++++...+ + ...++.++|.++...|++++|+.++++++. .+|..+.++..+|.+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 99999999999999999998632 1 235788999999999999999999999999 778888999999999
Q ss_pred HHhcccHHHHHHHHHHHHhhCC
Q 024712 176 YVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 176 ~~~~g~~~~A~~~~~~al~~~p 197 (263)
+...|++++|+.++++++.+.+
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998744
No 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.74 E-value=7.2e-17 Score=112.59 Aligned_cols=105 Identities=17% Similarity=0.069 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
.|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
.++...|++++|+..|++++.++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666666555
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=1.1e-15 Score=121.99 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=168.9
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG 101 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 101 (263)
.++.+++..+..... .++++.....++.. +|+...+|...+.++...| .+++++..++.++..+|++..+|
T Consensus 55 ~~~~~~r~~~~~~e~-se~AL~lt~~~L~~-------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEK-SERALELTEIIVRM-------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp HHHHHHHHHHHTTCC-SHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHh-------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 577788877777654 45577777777655 8999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHc-C-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHhcCCCHHHHHH
Q 024712 102 RLEGILLEAK-G-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--------TAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 102 ~~~a~~~~~~-~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
..++.++... + ++++++.++.++++.+|.+..+|...+.+....|.++ +++..+.++++.+|.+..+|..
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999998 7 8999999999999999999999999999999988888 9999999999999999999999
Q ss_pred HHHHHHhccc-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 172 LAEIYVSLQM-------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 172 la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
.+.++...+. ++++++++.+++..+|++..+|..+..++...|.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999886 7999999999999999999999999999988887
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.73 E-value=8.3e-17 Score=110.18 Aligned_cols=98 Identities=19% Similarity=0.052 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
+.+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 024712 182 YKQAAFCYEELILSQPTV 199 (263)
Q Consensus 182 ~~~A~~~~~~al~~~p~~ 199 (263)
+++|+..|+++++.+|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 555555555555555543
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=4.1e-16 Score=105.32 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 177 (263)
+..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
..|++++|+..+++++..+|+++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666665555554
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.73 E-value=2e-16 Score=110.31 Aligned_cols=107 Identities=10% Similarity=-0.035 Sum_probs=101.7
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 126 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 126 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
..+|.++..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++.++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 206 YADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 206 la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+|.++...|+ +++|+..|+++++++|+
T Consensus 83 l~~~~~~~~~---~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMES---YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh---HHHHHHHHHHHHHHChh
Confidence 9999999999 99999999999999885
No 136
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=6.6e-15 Score=124.52 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHhcCCCCHH
Q 024712 63 VWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPV 133 (263)
Q Consensus 63 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~ 133 (263)
...++..++.++.. .+++++|+..|+++.+. +++.+...+|.++... +++++|+.+|+++.+. .++.
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 329 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDAT 329 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHH
Confidence 34566667777776 67778888888777654 4566777777777776 7788888888887764 4567
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712 134 LHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAY 206 (263)
Q Consensus 134 ~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 206 (263)
++..+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 405 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 7777888777765 677788888888765 567788888888877 778888888888887653 57778888
Q ss_pred HHHHHh----cCCCCcHHHHHHHHHHhhccCC
Q 024712 207 ADVLYT----LGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 207 a~~~~~----~g~~~~~~~A~~~~~~al~~~~ 234 (263)
|.+|.. .++ +++|..+|+++++.+|
T Consensus 406 g~~y~~g~g~~~d---~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERD---YVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCC---HHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCC---HHHHHHHHHHHHHCCC
Confidence 888877 667 8888888888887763
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=1.7e-16 Score=109.55 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-------HHHH
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-------LYHL 204 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 204 (263)
..++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999988653 4788
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++|.++...|+ +++|+.+|++++...|+
T Consensus 88 ~lg~~~~~~~~---~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQND---LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHhhCcC
Confidence 99999999999 99999999999998875
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=3.1e-16 Score=118.07 Aligned_cols=157 Identities=10% Similarity=0.010 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHH
Q 024712 82 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLNK 157 (263)
Q Consensus 82 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 157 (263)
+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.++..+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577888888875 78999999999999999999999999999874 688999999999998 7 89999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh----cCCCCcHHHHHHHHH
Q 024712 158 YLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT----LGGVDNILLAKKYYA 227 (263)
Q Consensus 158 ~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~~~~A~~~~~ 227 (263)
++ .+.++.+++.+|.+|.. .+++++|+.+|+++++..|. ++.++..||.+|.. .++ +++|+.+|+
T Consensus 79 A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~ 153 (212)
T 3rjv_A 79 AV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYFK 153 (212)
T ss_dssp HH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHHH
T ss_pred HH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHHH
Confidence 95 46889999999999988 89999999999999999883 58999999999999 677 999999999
Q ss_pred HhhccCCCcchhHHHhHHHHHhh
Q 024712 228 STIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 228 ~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
++++. |+ +..+.+.|..++..
T Consensus 154 ~A~~~-~~-~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 154 GSSSL-SR-TGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHT-SC-TTHHHHHHHHHHHH
T ss_pred HHHHc-CC-CHHHHHHHHHHHHc
Confidence 99998 43 55567777666543
No 139
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=2.6e-14 Score=120.86 Aligned_cols=173 Identities=14% Similarity=0.022 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 63 VWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 63 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
.+.++..++..+.. .+++++|+..|+++.+. .++.+...+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 45567777888776 77888888888888764 456778888888888 78888899999888764 56788
Q ss_pred HHHHHHHHHHc-----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712 135 HKRRVAIAKAQ-----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAY 206 (263)
Q Consensus 135 ~~~l~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l 206 (263)
+..+|.++... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++. .++.++..+
T Consensus 294 ~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 369 (490)
T 2xm6_A 294 QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 88889888887 8899999999988875 56788889999988765 888999999999876 578889999
Q ss_pred HHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 207 ADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 207 a~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
|.+|.. .++ +++|+.+|+++++.. +..+++.+..++.
T Consensus 370 g~~y~~g~g~~~~---~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 370 GNALLQGKGVKKD---EQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCC---HHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 999988 677 999999999998864 3455555555544
No 140
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.71 E-value=1e-16 Score=115.40 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLED------------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
..+...|..++..|+|++|+..|.+++.. +|.+..++.++|.++...|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34445555555555555555555555554 455566777777777777777777777777777
Q ss_pred hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcC
Q 024712 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLG 214 (263)
Q Consensus 161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 214 (263)
++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776 55555655554443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=1.3e-16 Score=125.36 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=125.1
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCH-----HH--------------------------HHHHHHHHHhcCCCCcHHHHH
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVP-----LY--------------------------HLAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~-----~~--------------------------~~~la~~~~~~g~~~~~~~A~ 223 (263)
++...|++++|+..|++++.++|+++ .+ ...++.+ ..|+ +++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~---~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAE---REREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHH---HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHH---HHHHH
Confidence 99999999999999999999988652 11 1122222 2567 89999
Q ss_pred HHHHHhhccCCCcchhHHHhH
Q 024712 224 KYYASTIDLTGGKNTKALFGI 244 (263)
Q Consensus 224 ~~~~~al~~~~~~~~~~~~~l 244 (263)
+.|+++++++|+ +.....++
T Consensus 156 ~~~~~al~~~p~-~~~~~~~l 175 (281)
T 2c2l_A 156 EECQRNHEGHED-DGHIRAQQ 175 (281)
T ss_dssp TTTSGGGTTTSC-HHHHTHHH
T ss_pred HHHHhhhccccc-hhhhhhHH
Confidence 999999999996 54444444
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.71 E-value=1.3e-15 Score=103.86 Aligned_cols=118 Identities=19% Similarity=0.090 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
...|++++|+..+++++..+|.++.++..+|.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887654
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=3.7e-17 Score=115.29 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHh-----
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLET----- 161 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~----- 161 (263)
..+...|..++..|+|++|+..|++++..+|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556666666666666666666666666666 222 5556666666666666666666666655
Q ss_pred --cCCCHHHH----HHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 162 --FMADHDAW----RELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 162 --~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
+|++..+| +++|.++..+|++++|+.+|+++++++|++.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 55555555 5555555555555555555555555555543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=1.7e-16 Score=118.13 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=130.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCC
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------DNPLDPVLHKRRVAIAKAQGN 147 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~ 147 (263)
++..|++++|...++.+....+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35679999999966655553337788999999999999999999999999998 334445788999999999999
Q ss_pred hhHHHHHHHHHHHh---cCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHhcC
Q 024712 148 FPTAIEWLNKYLET---FMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVP----LYHLAYADVLYTLG 214 (263)
Q Consensus 148 ~~~A~~~~~~~l~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g 214 (263)
+++|+..+++++.. .+++ ..++..+|.++...|++++|+.++++++...+ .++ .++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999988 4433 45688999999999999999999999997643 222 34688999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCC
Q 024712 215 GVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~~~ 235 (263)
+ +++|..++++++++...
T Consensus 162 ~---~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 N---LLEAQQHWLRARDIFAE 179 (203)
T ss_dssp C---HHHHHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHHHHHH
Confidence 9 99999999999988553
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=2e-17 Score=127.93 Aligned_cols=199 Identities=10% Similarity=-0.095 Sum_probs=167.0
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCc---------
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQV-------SIAAMDCQCLDVAKDCIKVLQKQFPES--------- 97 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 97 (263)
..+.+...+......++.. +|+..++|..+ +.++...+...+++..+++.+...|..
T Consensus 17 ~~~~d~~~A~~~F~~a~~~-------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 17 MLPMSEARSLDLFTEITNY-------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred ccCCCHHHHHHHHHHHHHh-------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3466677777776666554 89999999998 788888888999999999999977743
Q ss_pred ------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-
Q 024712 98 ------------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA- 164 (263)
Q Consensus 98 ------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~- 164 (263)
..+...++.++...|+|++|.+.|..++...|.+. ..+.+|.+++..+++++|+..|+++....+.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 23455688999999999999999999999999888 9999999999999999999999988664311
Q ss_pred C-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712 165 D-HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (263)
Q Consensus 165 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~ 240 (263)
. ..+++.+|.++..+|++++|+.+|++++... |. .+.+.+.+|.++..+|+ .++|...|++++..+|+ ..+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~--~~~ 243 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE--PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC--HHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc--HHH
Confidence 1 3589999999999999999999999998654 55 56789999999999999 99999999999999995 444
Q ss_pred HHhHH
Q 024712 241 LFGIC 245 (263)
Q Consensus 241 ~~~l~ 245 (263)
...|.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.71 E-value=4.6e-16 Score=115.76 Aligned_cols=132 Identities=10% Similarity=-0.070 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----------------RVGRLEGILLEAKGLWAEAEKAYSSLL 125 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~ 125 (263)
.....+..+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566788899999999999999999999999999877 899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH-HHHHHHH
Q 024712 126 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA-FCYEELI 193 (263)
Q Consensus 126 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 193 (263)
..+|.+..++..+|.++...|++++|+..|+++++++|.+..++..++.++...++..++. ..|...+
T Consensus 116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999888877 4444443
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.71 E-value=2e-16 Score=108.29 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (263)
.++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhhccCCC
Q 024712 214 GGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 214 g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|+ +++|+..|+++++++|+
T Consensus 99 g~---~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HN---ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred CC---HHHHHHHHHHHHHhCcC
Confidence 99 99999999999999986
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-16 Score=108.81 Aligned_cols=114 Identities=22% Similarity=0.177 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (263)
.+...+..+|..+...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|.++.+++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444555555555555555555555555555544 44555555555555555555555555555555555555555
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
|.++...|++++|+.+|++++..+|++..++..++.+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5555555555555555555555555555555554444
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=1.5e-16 Score=112.09 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhcccHHHHHHHHHHHHhh----
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-------DHD-----AWRELAEIYVSLQMYKQAAFCYEELILS---- 195 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 195 (263)
...+...|..++..|++++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|.+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 196 ---QPTVPLYH----LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 196 ---~p~~~~~~----~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
+|+++.+| +++|.++..+|+ +++|+..|+++++++|+ +....-++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~-d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE-RKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 99999999 999999999999 99999999999999996 55444444443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=2e-15 Score=101.87 Aligned_cols=114 Identities=14% Similarity=0.030 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
...|++++|+..++++++.+|.++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999888775
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.69 E-value=1.6e-15 Score=104.47 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE 174 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 174 (263)
++.+|..+...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45566666666666666666666666666665 566666666666666666666666666666666 666666666
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (263)
++...|++++|+..|++++...|+++.+......+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 6666666666666666666666666655544444433
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.69 E-value=1.2e-17 Score=140.56 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|.++.+++.+|.++..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455677777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhcCCCCcHHHHHHHHH-----------HhhccCCC
Q 024712 179 LQMYKQAAFCYEELILSQPTVPLYHLAYADV--LYTLGGVDNILLAKKYYA-----------STIDLTGG 235 (263)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~~~~A~~~~~-----------~al~~~~~ 235 (263)
+|++++|+..|+++++++|++..++..++.+ +...|+ +++|+..++ +++.++|.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhcccccc
Confidence 8888888888888888888888888888877 777788 888888888 77777765
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=7e-16 Score=110.99 Aligned_cols=122 Identities=16% Similarity=-0.031 Sum_probs=111.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------------------FPESKRVGRLEGILLEAKGLWAEAEKAYSS 123 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 123 (263)
.....+...|..++..|++++|+..|.+++.. .|.+..++..+|.++...|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35677888999999999999999999999998 677778999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcccHH
Q 024712 124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYK 183 (263)
Q Consensus 124 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~ 183 (263)
++..+|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 66777777776655443
No 154
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.9e-14 Score=120.47 Aligned_cols=173 Identities=11% Similarity=-0.024 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 65 TLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 65 ~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
.++..+|.++...| ++++|+..|+++.+..|..+..++.+|.+|... +++++|+.+|+++. |.++.+++.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 37888999999999 999999999999999999888889999999765 79999999999998 889999999
Q ss_pred HHHH-H--HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 138 RVAI-A--KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 138 l~~~-~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
+|.+ + ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. |.++.++.++|.+
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 9998 4 4688999999999999854 58999999999998 55 9999999999998 8899999999998
Q ss_pred HHhc-CCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 210 LYTL-GGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 210 ~~~~-g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
|..- |-..++++|+.+|+++.+.. +..+.+.|..++.
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFS 365 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 8872 11223999999999998863 4455666666554
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.68 E-value=4.4e-16 Score=104.25 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 024712 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA 205 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 205 (263)
+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHhc-CCCCcHHHHHHHHHHhhccCCC
Q 024712 206 YADVLYTL-GGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 206 la~~~~~~-g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+|.++... |+ +++|+.++++++...|+
T Consensus 82 l~~~~~~~~~~---~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGK---EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSC---SHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHhhcccC
Confidence 66666666 66 66666666666666664
No 156
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.68 E-value=5.8e-17 Score=130.66 Aligned_cols=152 Identities=11% Similarity=-0.038 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
...+..+|..++..|++++|+..|++++...|++.. +...+++.++...+. ..++.++|.++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 344445555555555555555555555555554331 112233333332221 148899999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-hcCCCCcHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY-TLGGVDNILLA 222 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~~~~A 222 (263)
..|++++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++.++..++.+.. ..+. .+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998844 4456 7889
Q ss_pred HHHHHHhhccCCC
Q 024712 223 KKYYASTIDLTGG 235 (263)
Q Consensus 223 ~~~~~~al~~~~~ 235 (263)
...|.+++...|.
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 9999999999886
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.68 E-value=6.4e-16 Score=103.45 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=103.3
Q ss_pred CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHH
Q 024712 94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRE 171 (263)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 171 (263)
+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 58888899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-ccHHHHHHHHHHHHhhCCCCH
Q 024712 172 LAEIYVSL-QMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 172 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 200 (263)
+|.++... |++++|+.++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999764
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-15 Score=105.20 Aligned_cols=121 Identities=13% Similarity=-0.002 Sum_probs=113.4
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
...|.....+..+|..++..|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++..+|.++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3456788899999999999999999999999999999987 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
+..+|.++...|++++|+..+++++..+|++..++..++.+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888877543
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.68 E-value=1.3e-15 Score=104.90 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAW 169 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~ 169 (263)
.+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+ +.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345566677777777777777777777777777777777777777777777777777777777776665 6677
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
+.+|.++...|++++|+.+|++++...| ++.....++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777776 4666666666555443
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.67 E-value=3.2e-17 Score=138.08 Aligned_cols=137 Identities=14% Similarity=-0.005 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445567778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--HHhcccHHHHHHHHH-----------HHHhhCCCC
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYE-----------ELILSQPTV 199 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 199 (263)
..+|++++|+..++++++.+|++..++..++.+ +...|++++|+..++ +++.+.|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999999999988 888999999999999 888777654
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.66 E-value=2e-15 Score=126.54 Aligned_cols=134 Identities=9% Similarity=-0.075 Sum_probs=120.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---------------KRVGRLEGILLEAKGLWAEAEKAYSSL 124 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~ 124 (263)
.|.....+..+|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45667789999999999999999999999999999987 689999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH-HHHHH
Q 024712 125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELI 193 (263)
Q Consensus 125 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al 193 (263)
+..+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...+++++|... |.+++
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988753 44443
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.66 E-value=6.3e-15 Score=101.48 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRV 139 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 139 (263)
.+..+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.++..+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 456789999999999999999999999999888 799999999999999999999999999999999 88899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
.++...|++++|+..+++++..+|+++.+......+....++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998887766665544443
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=1.1e-15 Score=121.62 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=130.8
Q ss_pred cCChHHHHHHHHHHHHhCC--------Cc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFP--------ES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRV 139 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p--------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~ 139 (263)
.|++++|..+++++.+..+ +. ...+...|.++...|++++|+..|.+++...+.. ..++..+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666655554322 10 1133445778999999999999999999875432 35788999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYA 207 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la 207 (263)
.++...|++++|+.+|++++++.+.. ..++..+|.+|.. |++++|+.+|++++.+.|.. ..++.++|
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999986432 4678899999998 99999999999999987643 46789999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhccCCCc-c----hhHHHhHHHHHh
Q 024712 208 DVLYTLGGVDNILLAKKYYASTIDLTGGK-N----TKALFGICLVMF 249 (263)
Q Consensus 208 ~~~~~~g~~~~~~~A~~~~~~al~~~~~~-~----~~~~~~l~~~~~ 249 (263)
.++...|+ +++|+.+|++++.+.|.. . ...+.+++.++.
T Consensus 163 ~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 163 RLLVRQQK---FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 99999999 999999999999986641 1 235555555554
No 164
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=5.5e-14 Score=117.67 Aligned_cols=178 Identities=13% Similarity=0.041 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-FPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.+.+...+|..+...+.++++.......... .+.++.+++.+|.++...| ++++|+.+|+++.+..|.....++.+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3556777889998888666555543333322 1344559999999999999 99999999999999999999988999
Q ss_pred HHHHHHc----CChhHHHHHHHHHHHhcCCCHHHHHHHHHH-H--HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712 139 VAIAKAQ----GNFPTAIEWLNKYLETFMADHDAWRELAEI-Y--VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (263)
Q Consensus 139 ~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (263)
|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.++..+|.+|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 9999765 79999999999998 8999999999999 4 4689999999999999865 48999999999998
Q ss_pred hcC--CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 212 TLG--GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 212 ~~g--~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.| -..++++|+.+|+++. ++ ++.+.+.|..++..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa---~g-~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV---GR-EVAADYYLGQIYRR 330 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT---TT-CHHHHHHHHHHHHT
T ss_pred -cCCCCCCCHHHHHHHHHHHh---CC-CHHHHHHHHHHHHC
Confidence 55 1112999999999999 54 77888877777654
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.65 E-value=2.6e-16 Score=126.82 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH-H
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-V 177 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 177 (263)
.++..+|.++...|++++|+..+++++..+|++..+++++|.++...|++++|+..|+++++++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999884 4
Q ss_pred hcccHHHHHHHHHHHHhhCCCCHH
Q 024712 178 SLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
..+..+++...|.+++...|.++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788999999999999997753
No 166
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.65 E-value=1.7e-15 Score=106.52 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=59.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
.+.|++|+..++++++++|+++.++.++|.++...++ +++|+..|+++++++|++..+|+.+|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3455555555555555555555555555555555544 347777777777777777777777777777664
Q ss_pred -----------cHHHHHHHHHHHHhhCCCCHH
Q 024712 181 -----------MYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 181 -----------~~~~A~~~~~~al~~~p~~~~ 201 (263)
++++|+.+|+++++++|++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 677777777777777776643
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.65 E-value=5.7e-15 Score=101.55 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PVL 134 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~ 134 (263)
+....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
+..+|.++...|++++|+..++++++..| ++..+..++.+....++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 68888888887765543
No 168
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=1.4e-14 Score=118.05 Aligned_cols=168 Identities=15% Similarity=0.017 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH------
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------ 132 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------ 132 (263)
..+...++..+...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45566788889999999999999999999887542 2567889999999999999999999998754332
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----- 199 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 199 (263)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346789999999999999999999999875 3345677889999999999999999999999987753
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
..++..+|.++...|+ +++|..++++++.+.+
T Consensus 174 ~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGD---LDNARSQLNRLENLLG 205 (373)
T ss_dssp HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh
Confidence 3578899999999999 9999999999987743
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.64 E-value=3.4e-15 Score=121.64 Aligned_cols=123 Identities=16% Similarity=0.052 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLE----------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
..+..+|..++..|++++|+..|++++. .+|.+..++.++|.++..+|++++|+..++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3455667777777777777777777776 667777888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712 163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224 (263)
Q Consensus 163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~ 224 (263)
|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++ ++++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~---~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA---QKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 88888888888888888888888888888888888888888888888888887 766654
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.63 E-value=6.1e-16 Score=105.14 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=61.3
Q ss_pred cCcHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 111 KGLWAEAEKAYSSLLED---NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 111 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666677777777766 465666666777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCCHHHH
Q 024712 188 CYEELILSQPTVPLYH 203 (263)
Q Consensus 188 ~~~~al~~~p~~~~~~ 203 (263)
.+++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777766666543
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.62 E-value=1.4e-14 Score=117.94 Aligned_cols=125 Identities=15% Similarity=0.055 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQK----------------QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...+..+|..++..|++++|+..|+++++ ..|.+..++..+|.++...|++++|+.+++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45577899999999999999999999998 67778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887653
No 172
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=3.4e-15 Score=104.99 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=93.1
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY----------KQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (263)
+.+.+++|+..++++++++|+++++|+++|.++...+++ ++|+..|+++++++|+++.+++++|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 214 G-----------GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 214 g-----------~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
| + +++|+.+|+++++++|+ +......+-++-..
T Consensus 94 g~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~-~~~y~~al~~~~ka 137 (158)
T 1zu2_A 94 AFLTPDETEAKHN---FDLATQFFQQAVDEQPD-NTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHCCCHHHHHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTH
T ss_pred cccCcchhhhhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhC
Confidence 5 7 99999999999999997 77777777666554
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.61 E-value=1.1e-13 Score=108.32 Aligned_cols=164 Identities=10% Similarity=-0.065 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----CHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKR 137 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~ 137 (263)
...+..+|.++...|++++|++.+.+.+...| ++..+....+.++..+|+.+.|.+.++++...+|+ +-.+...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 34456789999999999999999999988887 78899999999999999999999999999998883 2233334
Q ss_pred H--HHHHHHcC--ChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----------CCCCHH
Q 024712 138 R--VAIAKAQG--NFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS----------QPTVPL 201 (263)
Q Consensus 138 l--~~~~~~~g--~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~ 201 (263)
+ +.+....| ++.+|...|+++.+..|+ ++..+++ ++..+|++++|...++.+++. +|+++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 4 44466556 899999999999888886 2333333 889999999999999987776 488999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++.++..+...+|+ +|.+++.++.+.+|+
T Consensus 257 ~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 257 FLANQITLALMQGL-----DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHHHHHTTC-----TTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCh-----HHHHHHHHHHHhCCC
Confidence 99899888888887 678999999999996
No 174
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.61 E-value=1.2e-13 Score=112.55 Aligned_cols=196 Identities=11% Similarity=-0.056 Sum_probs=151.1
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHH
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGI 106 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~ 106 (263)
....+.+.+.......+... . ..++ ....++..++..+...|++++|...+++++...|.. ..++..+|.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEEL--P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTC--C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC--C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556777777776666541 1 1111 133467788999999999999999999999876532 234678999
Q ss_pred HHHHcCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHH
Q 024712 107 LLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELA 173 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la 173 (263)
++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...|.. ..++..+|
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 9999999999999999999864 2334577889999999999999999999999987653 46788999
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQP--TVPLYHL-----AYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.++...|++++|..++++++.+.+ ..+..+. .++.++...|+ +++|...+.+++...|.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD---KAAAANWLRHTAKPEFA 247 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHSCCCCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC---HHHHHHHHHhCCCCCCC
Confidence 999999999999999999987633 2222211 34556889999 99999999999987764
No 175
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=1.4e-15 Score=117.59 Aligned_cols=178 Identities=10% Similarity=-0.106 Sum_probs=148.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCcHHHHHHHHHHHHhcCCCCH--------
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE-------GILLEAKGLWAEAEKAYSSLLEDNPLDP-------- 132 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------- 132 (263)
+..|.-+ ..+++..|...|.+++..+|+.+.+|..+ +.++...++..+++..+++.+.+.|...
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3345554 68999999999999999999999999999 8999999999999999999999776543
Q ss_pred -------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 133 -------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 133 -------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.+...++.++...|++++|...|..++...|.+. ..+.+|.+++..+++++|+..|+++....+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 3445588999999999999999999999999888 99999999999999999999999887653221
Q ss_pred --HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC--CCcchhHHHhHHHHHhh
Q 024712 200 --PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT--GGKNTKALFGICLVMFV 250 (263)
Q Consensus 200 --~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~--~~~~~~~~~~l~~~~~~ 250 (263)
..+++.+|.++..+|+ +++|+.+|++++... |.....+++.+++|...
T Consensus 169 ~~~~a~~~LG~al~~LG~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLAL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 3489999999999999 999999999998654 42133344444444433
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.59 E-value=2.8e-15 Score=101.82 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=86.8
Q ss_pred HcCChHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 024712 76 DCQCLDVAKDCIKVLQKQ---FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152 (263)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 152 (263)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 358999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHH
Q 024712 153 EWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 153 ~~~~~~l~~~p~~~~~~~~ 171 (263)
..+++++...|+++.+...
T Consensus 82 ~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 9999999999999876543
No 177
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=1.6e-13 Score=108.31 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD--- 165 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--- 165 (263)
|.....+...+..+...|++++|+..+++++...|... ..+..+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34445566788899999999999999999999877654 245678888999999999999999999875544
Q ss_pred ---HHHHHHHHHHHHhcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 166 ---HDAWRELAEIYVSLQMYKQAAFCYEELI---LSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 166 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|...|+ +++|+.+|++++++.+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCR 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999 5566643 588999999999999 99999999999987542
Q ss_pred -c----chhHHHhHHHHHhh
Q 024712 236 -K----NTKALFGICLVMFV 250 (263)
Q Consensus 236 -~----~~~~~~~l~~~~~~ 250 (263)
. ...+++.++.++..
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 1 14556666666554
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.58 E-value=2e-14 Score=102.41 Aligned_cols=132 Identities=16% Similarity=0.011 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HH
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HD 167 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~ 167 (263)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..+++++...+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34445555555555555555555555443211 1245556666666666666666666666554332 34
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
++..+|.++...|++++|+.++++++...+. ...++..+|.++...|+ +++|..++++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH
Confidence 5666667777777777777777766654321 13456667777777777 7777777777766543
No 179
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=7e-14 Score=110.33 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=123.5
Q ss_pred ccCChhHHHHHHHHHhcCcccccccCcch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHH
Q 024712 35 KVRRPDKVLRHGLSILNDPKKRSALGPDV---WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEG 105 (263)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a 105 (263)
..++.+.+......++.. ....|+. ...+..++..+...+++++|+..+++++...+.. ..++..+|
T Consensus 87 ~~~~y~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKK----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HTTCHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhcc----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345566666666665544 1122222 2344458888888899999999999999965432 33688999
Q ss_pred HHHHHcCcHHHHHHHHHHHHhc---C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHH
Q 024712 106 ILLEAKGLWAEAEKAYSSLLED---N----PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWREL 172 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~---~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l 172 (263)
.+|...|++++|+.+|++++.. . +....++.++|.++..+|++++|+.++++++++.+.. +.+++.+
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999999999999952 1 2223588999999999999999999999999986544 7899999
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHhh
Q 024712 173 AEIYVSLQ-MYKQAAFCYEELILS 195 (263)
Q Consensus 173 a~~~~~~g-~~~~A~~~~~~al~~ 195 (263)
|.++..+| .+++|+.+|++++.+
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999 579999999999865
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=5.2e-14 Score=100.20 Aligned_cols=137 Identities=13% Similarity=-0.071 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC----
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---- 131 (263)
....++..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..+++++...+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356678889999999999999999999999876532 2478889999999999999999999999865432
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999874322 567889999999999999999999999987543
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.56 E-value=8.9e-14 Score=103.20 Aligned_cols=136 Identities=17% Similarity=0.095 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CCCC-
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLD- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~- 131 (263)
....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.. .+++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 57788999999999999999999999999993 3456678899999999999999999999999987 4433
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
..++..+|.++...|++++|+..+++++...+. + ..++..+|.++...|++++|+.++++++.+..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999976432 2 23468899999999999999999999997643
No 182
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=1.6e-12 Score=101.91 Aligned_cols=161 Identities=16% Similarity=0.073 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 83 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
|+..+++.+...+.+......+|.++...|++++|+.++.+.+..+| .+..++...+.++...|+.+.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78889888877656666778999999999999999999999999887 7889999999999999999999999999999
Q ss_pred hcCC----CHHHHHHH--HHHHHhcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 161 TFMA----DHDAWREL--AEIYVSLQ--MYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 161 ~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
.+|+ +-.+...+ |.+.+..| ++++|..+|+++....|+ .+..+++ ++..+|+ +++|...++.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~---~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN---IAEAQGIVELLL 238 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC---HHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC---HHHHHHHHHHHH
Confidence 9883 22334444 44466666 999999999999888886 2333333 8999999 999999999887
Q ss_pred cc----------CCCcchhHHHhHHHHHhh
Q 024712 231 DL----------TGGKNTKALFGICLVMFV 250 (263)
Q Consensus 231 ~~----------~~~~~~~~~~~l~~~~~~ 250 (263)
+. +|+ ++.++.+++.+...
T Consensus 239 ~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 239 SDYYSVEQKENAVLY-KPTFLANQITLALM 267 (310)
T ss_dssp SHHHHTTTCHHHHSS-HHHHHHHHHHHHHH
T ss_pred HhcccccccccCCCC-CHHHHHHHHHHHHH
Confidence 76 364 77888777666544
No 183
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=4.7e-12 Score=115.25 Aligned_cols=171 Identities=11% Similarity=0.005 Sum_probs=137.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----------
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----------- 130 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------- 130 (263)
+.+.+|.++|.++...|++++|+..|.++ +++..+...+.++...|+|++|+++|..+.+..++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 55788899999999999999999999774 78889999999999999999999999887655432
Q ss_pred ----------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 131 ----------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 131 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
+...+..+|..++..|++++|+.+|.++ ..|..+|.++...|++++|++++.++..
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 2234567888999999999999999986 4788899999999999999999988854
Q ss_pred hCC-------------------------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 195 SQP-------------------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 195 ~~p-------------------------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
..+ .+++.+..++..|...|. +++|+..++.++.++|. ....+..+..++.
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~---feEAI~LlE~aL~Lera-H~gmftELaiLya 1325 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChh-HhHHHHHHHHHHH
Confidence 433 134455677788889999 99999999999999875 5555544444433
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=8.5e-13 Score=109.48 Aligned_cols=167 Identities=14% Similarity=0.026 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----------------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN 128 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 128 (263)
.....|..+...|++++|++.|..+++..|... .++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344567888899999999999999999887432 357889999999999999999999998865
Q ss_pred CCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 129 PLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 129 p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
+... .+...++.++...|++++|+..+++++...+. ...++..+|.++...|+|++|+.++++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 5432 34566788888899999999999999976432 26788999999999999999999999998652
Q ss_pred ------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 197 ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 197 ------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+....++..+|.+|...|+ +++|...|++++...+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRN---LAKSKASLTAARTAANS 207 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhhc
Confidence 2235688999999999999 99999999999877543
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.47 E-value=9.1e-13 Score=88.88 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..+|+.+|.++...|++++|+..|++++.+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred C
Q 024712 197 P 197 (263)
Q Consensus 197 p 197 (263)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 186
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1e-11 Score=108.17 Aligned_cols=173 Identities=16% Similarity=0.025 Sum_probs=153.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----------
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAK-DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------- 127 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 127 (263)
.|..+.+|...+......|+.++|+ .+|++++...|.+..++..++.+....|+++.|..+|++++..
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 5667788888888888899999997 9999999999999999999999999999999999999999975
Q ss_pred CCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 024712 128 NPL-----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQ-MYKQAAFCYEELIL 194 (263)
Q Consensus 128 ~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 194 (263)
.|. ...+|..++.+..+.|..+.|...|.++++. .+....+|...|.+....+ +++.|..+|+.+++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 253 2457888899888999999999999999988 5566778888888777765 48999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..|+++..+...+......|+ .+.|...|++++...|+
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS
T ss_pred HCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC
Confidence 999999999999999999999 99999999999998873
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=8e-14 Score=93.20 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHH
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLA 205 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 205 (263)
...+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888887 777778
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHH
Q 024712 206 YADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 206 la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
+|.++...|+ ++.|+..+++
T Consensus 84 ~~~~~~~~~~---~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGS---VQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHC---CCCCSSSSSS
T ss_pred HHHHHHHHHh---HhhhHhHHHH
Confidence 8888888777 6666555443
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.46 E-value=1.1e-12 Score=84.20 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (263)
..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred hc
Q 024712 212 TL 213 (263)
Q Consensus 212 ~~ 213 (263)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.45 E-value=1.5e-12 Score=87.74 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
.+|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC--CHHHHHHHHHHHHhcc
Q 024712 161 TFMA--DHDAWRELAEIYVSLQ 180 (263)
Q Consensus 161 ~~p~--~~~~~~~la~~~~~~g 180 (263)
..|. +......+...+...+
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 9874 3444445544444433
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=8.1e-14 Score=93.18 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWR 170 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~ 170 (263)
++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777777777777777777777777777777 66777
Q ss_pred HHHHHHHhcccHHHHHHHHH
Q 024712 171 ELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~ 190 (263)
.+|.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777776666655443
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.43 E-value=2.9e-12 Score=82.27 Aligned_cols=85 Identities=22% Similarity=0.154 Sum_probs=64.0
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 175 (263)
.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcc
Q 024712 176 YVSLQ 180 (263)
Q Consensus 176 ~~~~g 180 (263)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66543
No 192
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.39 E-value=1.7e-10 Score=105.23 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=116.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHH--------------------Hh--CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQ--------------------KQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~--------------------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
+|.++...|.+++|..+|+++- +. ..+.+.+|..+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 4666667777777766654431 11 1366788999999999999999999999775
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHhcc
Q 024712 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------------DHDAWRELAEIYVSLQ 180 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------~~~~~~~la~~~~~~g 180 (263)
+++..+..++.++...|++++|+++|..+.+..+. +...+..+|..++..|
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999999887755432 2334667899999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
+|++|..+|.++ ..|..+|.++.++|+ +++|++.++++
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge---~q~AIEaarKA 1247 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAVDGARKA 1247 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCC---HHHHHHHHHHh
Confidence 999999999886 478899999999999 99999999998
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.37 E-value=4.7e-12 Score=83.21 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344444455555555555555555555555555555554455555555555555555555555544443
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.37 E-value=6.2e-12 Score=82.61 Aligned_cols=71 Identities=18% Similarity=0.061 Sum_probs=43.8
Q ss_pred cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 162 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhc
Confidence 456666666666666666666666666666666666666666666666666666 66666666666665543
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.36 E-value=2.7e-12 Score=104.97 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
...+..++..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++ .| +...|..+|..++
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~ 133 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCY 133 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTT-----CC--------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHH
Confidence 335555555666666666666666655543222 3334444444444444444443332 12 2235555555555
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------------------------
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-------------------------- 197 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------- 197 (263)
..|++++|+.+|.++ ..|..+|.++..+|++++|++++.++. +|
T Consensus 134 ~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 134 DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp ---CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred HcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 555555555555544 234555555555555555555555551 11
Q ss_pred -CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 198 -TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 198 -~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.++.-...+..+|...|. +++|+.+++.++.+++. ....+.++.+++.+
T Consensus 204 ~~~ad~l~~lv~~Yek~G~---~eEai~lLe~aL~le~a-h~~~ftel~il~~k 253 (449)
T 1b89_A 204 VVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYSK 253 (449)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHT
T ss_pred HhCHhhHHHHHHHHHHCCC---HHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHh
Confidence 122223345678888999 99999999999999875 77777777777655
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.35 E-value=3.1e-12 Score=83.74 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=52.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
..|.++...|++++|+..++++++.+|.++. +++.+|.++...|++++|+..|++++.++|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4455556666666666666666666666666 66666666666666666666666666666666555433 23
Q ss_pred CCcHHHHHHHHHHhhccCCC
Q 024712 216 VDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 216 ~~~~~~A~~~~~~al~~~~~ 235 (263)
+.++...|.+++..+|+
T Consensus 77 ---~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 ---VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ---HHHHHHHHCCTTHHHHC
T ss_pred ---HHHHHHHHHHHhccCcc
Confidence 55555566555555553
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.34 E-value=3.9e-12 Score=83.20 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
+..|..+...|++++|+..++++++.+|.++. ++..+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788999999999999999999999999999 99999999999999999999999999999999888744 6
Q ss_pred cHHHHHHHHHHHHhhCCCCH
Q 024712 181 MYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~ 200 (263)
.+.+++..|++++..+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 78889999988888877653
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=3e-10 Score=99.00 Aligned_cols=173 Identities=12% Similarity=-0.012 Sum_probs=150.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------CC-----------cHHHHHHHHHHHHHcCcHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----------PE-----------SKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~~a~~~~~~~~~~~A 117 (263)
.|....++...+......|+++.|..+|++++... |. ...+|...+.+..+.|..+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 55667778888888889999999999999999752 42 345788889999999999999
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 118 EKAYSSLLED-NPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 118 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..+|.+++.. .+....++...+.+....+ +++.|...|+++++..|+++..|...+......|+.+.|..+|++++..
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999987 4455677777787777765 4899999999999999999999999999999999999999999999998
Q ss_pred CCC---CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 196 QPT---VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 196 ~p~---~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|. ...+|......-...|+ .+.+.+.+.++.+..|+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 883 45678888888889999 99999999999999997
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.7e-11 Score=99.55 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------CCC
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN------PLD 131 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~ 131 (263)
..++..+|..+...|++++|...+.+++...+... .+...++.++...|++++|+.++++++... +..
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 34577899999999999999999999988765322 345567888888899999999999998753 223
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC---CC---
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TV--- 199 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~--- 199 (263)
..++..+|.++...|++++|+..+++++... |....++..+|.+|...|++++|..++++++...+ ..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 4688899999999999999999999998763 33367889999999999999999999999987643 32
Q ss_pred -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 200 -~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
...+..+|.++...|+ +.+|..+|.+++..
T Consensus 215 ~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKD---YKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 2356778888888999 99999999999865
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.31 E-value=8.8e-11 Score=81.86 Aligned_cols=109 Identities=18% Similarity=0.095 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHH
Q 024712 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFC 188 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 188 (263)
++++|+.+|+++.+..+. .+. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455566666666554422 222 555555555555666666666554 455666666666655 5566666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHhhcc
Q 024712 189 YEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 189 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~al~~ 232 (263)
|+++.+. .++.++.++|.+|.. .++ +++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d---~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKN---EKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcC---HHHHHHHHHHHHHC
Confidence 6666554 455666666666665 455 66666666666655
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.30 E-value=3.4e-11 Score=98.54 Aligned_cols=168 Identities=11% Similarity=-0.020 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
...|..+|..++..|.+++|..+|.++ ..+..+|.++.+.|+|++|++.++++ .++.+|...+.++.
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 188 (449)
T ss_dssp ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence 358889999999999999999999976 46788999999999999999999999 46889999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~ 223 (263)
..|+++.|..+... +..+| +-...++.+|...|++++|+.++++++.+++.....+..+|.+|.+-+ +++..+++
T Consensus 189 ~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl 263 (449)
T 1b89_A 189 DGKEFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 263 (449)
T ss_dssp HTTCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HcCcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 99999999777765 33444 445568899999999999999999999999999999999988887653 12277788
Q ss_pred HHHHHhhccCC-----CcchhHHHhHHHHHhh
Q 024712 224 KYYASTIDLTG-----GKNTKALFGICLVMFV 250 (263)
Q Consensus 224 ~~~~~al~~~~-----~~~~~~~~~l~~~~~~ 250 (263)
+.|...+.+.| . +...|..+...+..
T Consensus 264 ~~~~~~ini~k~~~~~~-~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAE-QAHLWAELVFLYDK 294 (449)
T ss_dssp HHHSTTSCHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHH-HHHHHHHHHHHHHh
Confidence 88887777765 3 56666666666544
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.3e-10 Score=81.07 Aligned_cols=120 Identities=11% Similarity=-0.133 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHH
Q 024712 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE 153 (263)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 153 (263)
+++++|+..|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 5789999999999987643 333 999999999999999999999986 688999999999998 899999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 154 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
+|+++.+. .++.+++.||.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 99999876 789999999999999 899999999999999874 455655554
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.29 E-value=3.7e-10 Score=90.13 Aligned_cols=145 Identities=13% Similarity=0.016 Sum_probs=110.4
Q ss_pred HHHHHHhCCCcHHHH--HHHHHHHHHcC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---C-ChhHHHHHHHH
Q 024712 87 IKVLQKQFPESKRVG--RLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---G-NFPTAIEWLNK 157 (263)
Q Consensus 87 ~~~~~~~~p~~~~~~--~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~ 157 (263)
..++....|.++.++ +..|..+...+ .+.+|+.+|+++++.+|++..++..++.++... + ........+..
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 334556667766554 45666666554 457899999999999999998888777777532 1 11111111221
Q ss_pred ------HHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 158 ------YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 158 ------~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
++..+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|+ +++|+..|.+++.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~Alr 338 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence 22567999999999999998899999999999999999974 6778899999999999 9999999999999
Q ss_pred cCCC
Q 024712 232 LTGG 235 (263)
Q Consensus 232 ~~~~ 235 (263)
++|.
T Consensus 339 L~P~ 342 (372)
T 3ly7_A 339 LRPG 342 (372)
T ss_dssp HSCS
T ss_pred cCCC
Confidence 9996
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.25 E-value=4.3e-11 Score=100.52 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=103.7
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHH
Q 024712 105 GILLEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDA 168 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~ 168 (263)
+..+...|+|++|+..++++++. .|+++ .++.++|.+|..+|++++|+.++++++++ .|++ ...
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44466789999999999999874 45555 57889999999999999999999999975 3444 556
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
+.+||.+|..+|++++|+.+|++++.+ .|++|. ....++.++..++. +++|...|.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~---~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM---FRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 889999999999999999999999964 566655 45688999999999 99999999998654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.24 E-value=1.1e-10 Score=98.15 Aligned_cols=127 Identities=11% Similarity=0.033 Sum_probs=106.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCCH---H
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQF-----PE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDP---V 133 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~ 133 (263)
.+..+..+|++++|+.+++++++.. |+ ....+..+|.+|..+|+|++|+.++++++.. .|+++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3445668899999999999999852 33 4456788999999999999999999999974 45665 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
.+.++|.+|..+|++++|+..+++++++ .|++ ......++.++..++.+++|...|.++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999975 4555 4556789999999999999999999886543
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.22 E-value=6.6e-10 Score=88.70 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=108.5
Q ss_pred CcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcH-------HHHH-HHHH--HHHh
Q 024712 60 GPDVWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW-------AEAE-KAYS--SLLE 126 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-------~~A~-~~~~--~~~~ 126 (263)
+++-+..+. .|..++..+ ++.+|+.+|+++++.+|+.+.++..++.++.....+ ..++ ..++ .++.
T Consensus 193 ~~~Aydl~L-ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFY-QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHH-HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 344444444 355555544 458999999999999999999998888877532111 1111 1222 2335
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
.+|.++.++..++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|.+++.++|..+.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 67999999999999999999999999999999999974 778889999999999999999999999999998754
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.17 E-value=2e-09 Score=82.70 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=90.3
Q ss_pred cCCCCHHHHHHHHHHHHH-----cCC------hhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-----ccHHHHHHH
Q 024712 127 DNPLDPVLHKRRVAIAKA-----QGN------FPTAIEWLNKYLETFMA--DHDAWRELAEIYVSL-----QMYKQAAFC 188 (263)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~-----~g~------~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~ 188 (263)
.+|+++..++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 356667766666665543 132 56899999999999999 677999999999995 999999999
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhccCCC
Q 024712 189 YEELILSQPTV-PLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 189 ~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|+++++++|+. ..++..+|+.+... |+ ++.|..++++++..+|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd---~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNN---RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999884 99 99999999999999875
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.16 E-value=6.2e-10 Score=71.70 Aligned_cols=72 Identities=11% Similarity=-0.049 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 128 NPLDPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46677777777777765544 5677777777777777777777777777777777777777777777777664
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.05 E-value=1.8e-09 Score=69.55 Aligned_cols=71 Identities=10% Similarity=-0.036 Sum_probs=67.2
Q ss_pred cCCCHHHHHHHHHHHHhccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 162 FMADHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 162 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+|.++.++..+|.+++..++ .++|...+++++..+|+++.+...+|..++..|+ +++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 68999999999999976665 7999999999999999999999999999999999 99999999999999986
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=5.2e-09 Score=72.78 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
...+.+.|.+.+..+|.+..+.+++|.++.+.+ +..+++..++.+++.+ | ...++++.+|..+++.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345555666666666667777777777777766 4557777777777776 5 4567777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHH
Q 024712 189 YEELILSQPTVPLYHL 204 (263)
Q Consensus 189 ~~~al~~~p~~~~~~~ 204 (263)
++++++.+|++..+..
T Consensus 94 ~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCCCCHHHHH
Confidence 7777777777765543
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=2.2e-08 Score=69.67 Aligned_cols=94 Identities=11% Similarity=-0.103 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChhHHHHH
Q 024712 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDN-P-LDPVLHKRRVAIAKAQGNFPTAIEW 154 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (263)
...+.+.|.+.....|.+..+.+.+|.++.+.+ +.++++.+++.++..+ | .+.++++.+|..+++.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345666777777777888899999999999988 6779999999999988 6 5578999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHH
Q 024712 155 LNKYLETFMADHDAWRELA 173 (263)
Q Consensus 155 ~~~~l~~~p~~~~~~~~la 173 (263)
++++++.+|++..+....-
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHH
Confidence 9999999999887765433
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.90 E-value=3.1e-08 Score=65.21 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 206 (263)
-.+.+|..++..|++..|+.+|+.+++.. +..+.++..+|.+++.+|+++.|+..+++++++.|++..+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33455555555555555555555555542 22345555666666666666666666666666666665554444
Q ss_pred H
Q 024712 207 A 207 (263)
Q Consensus 207 a 207 (263)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.89 E-value=1.8e-08 Score=77.37 Aligned_cols=107 Identities=11% Similarity=-0.065 Sum_probs=92.6
Q ss_pred hCCCcHHHHHHHHHHHHH---c--C------cHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChhHHHHH
Q 024712 93 QFPESKRVGRLEGILLEA---K--G------LWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQ-----GNFPTAIEW 154 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~ 154 (263)
.+|+++..++..|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456778888877776643 1 2 457899999999999999 567999999999995 999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCC
Q 024712 155 LNKYLETFMAD-HDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 155 ~~~~l~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 199 (263)
|+++++++|+. ...++..|..+.. .|+++.|..++++++..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 499999999999999988873
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=4.1e-07 Score=76.76 Aligned_cols=160 Identities=9% Similarity=-0.025 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----------cCCC
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----------DNPL 130 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------~~p~ 130 (263)
|..+.+|...+......|+.+.|..++++++.. |.+...+...+.... .++ ....+..... ..+.
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEA---VYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTH---HHHHHHHHTC----------CHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhH---HHHHHHHHHHhhccchhhhhcccc
Confidence 445667777777778888899999999999888 877655554433310 000 0000000000 0000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
...+|...+......+..+.|...|+++ ...+.....|...|.+.+..+ +.+.|..+|+.+++..|+++..+...++.
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1123333344443444455555555555 222223334444444433333 35555555555555555544444444444
Q ss_pred HHhcCCCCcHHHHHHHHHHh
Q 024712 210 LYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 210 ~~~~g~~~~~~~A~~~~~~a 229 (263)
....|+ .+.|...|+++
T Consensus 364 e~~~~~---~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGD---EENARALFKRL 380 (493)
T ss_dssp HHHHTC---HHHHHHHHHHS
T ss_pred HHHcCC---HHHHHHHHHHH
Confidence 444455 55555555544
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=2.5e-07 Score=78.09 Aligned_cols=146 Identities=10% Similarity=-0.095 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
.....+|++++...|..+.+|...+..+...|+.++|..+|++++.. |.+...+...+... +.++....+.....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999 99887776555441 11121111111110
Q ss_pred ----------hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHh
Q 024712 161 ----------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYAST 229 (263)
Q Consensus 161 ----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~~~~A~~~~~~a 229 (263)
..+....+|...+......+..+.|..+|.++ ...+.....+...|.+.+..+ + .+.|...|+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d---~~~ar~ife~a 346 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS---RATPYNIFSSG 346 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC---SHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC---hHHHHHHHHHH
Confidence 01122467888888888889999999999999 444445667777777777665 6 89999999999
Q ss_pred hccCCC
Q 024712 230 IDLTGG 235 (263)
Q Consensus 230 l~~~~~ 235 (263)
++..|+
T Consensus 347 l~~~~~ 352 (493)
T 2uy1_A 347 LLKHPD 352 (493)
T ss_dssp HHHCTT
T ss_pred HHHCCC
Confidence 998876
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.84 E-value=6.1e-08 Score=63.76 Aligned_cols=76 Identities=14% Similarity=-0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 170 (263)
+.-.+.+|..++..|+|..|+.+|+.++... +....++..+|.+++.+|+++.|+..++++++..|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455667777777777777777777777642 234567777777777777777777777777777777777766
Q ss_pred HHH
Q 024712 171 ELA 173 (263)
Q Consensus 171 ~la 173 (263)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 655
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.84 E-value=1.9e-08 Score=83.16 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=76.9
Q ss_pred HcCcHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHH
Q 024712 110 AKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELA 173 (263)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la 173 (263)
..|+|++|+..++++++. .|+++ .++.++|.+|..+|++++|+.++++++++ .|++ ...+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999884 56665 46788999999999999999999999975 3444 55688999
Q ss_pred HHHHhcccHHHHHHHHHHHHhh-----CCCCHHHH
Q 024712 174 EIYVSLQMYKQAAFCYEELILS-----QPTVPLYH 203 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 203 (263)
.+|..+|++++|+.+|++++++ .|++|.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999865 56666543
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.83 E-value=3.5e-06 Score=71.20 Aligned_cols=164 Identities=9% Similarity=-0.104 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcC-CCCHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDN-PLDPVL 134 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~-p~~~~~ 134 (263)
++..+...+.+.|++++|+.+|+.+.+..- -+...+..+-.++... +..++|.++|+++.... +-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 455566778899999999999999988642 2444555554555433 34789999999988754 235778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHh
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAYADVLYT 212 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 212 (263)
+..+...+.+.|++++|...+++..+.. +-+...|..+-..|...|+.++|..+|.+..+..- -+...+..+-.++..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999999988753 33677888899999999999999999999887542 246678889999999
Q ss_pred cCCCCcHHHHHHHHHHhhcc
Q 024712 213 LGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~ 232 (263)
.|+ .++|...+++.-+.
T Consensus 188 ~g~---~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 TKN---ADKVYKTLQRLRDL 204 (501)
T ss_dssp TTC---HHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHh
Confidence 999 99999999987654
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.79 E-value=3e-08 Score=82.11 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=80.8
Q ss_pred HHHHcCcHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHH
Q 024712 107 LLEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWR 170 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~ 170 (263)
-+...|+|++|+..++++++. .|+++ .++.+++.+|..+|++++|+.++++++.+ .|++ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 355678999999999999874 45555 46788999999999999999999999875 2444 45678
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHH---HHHHHHHHH
Q 024712 171 ELAEIYVSLQMYKQAAFCYEELILS-----QPTVPLY---HLAYADVLY 211 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~ 211 (263)
+||.+|..+|++++|+.+|++++.+ .|++|.+ ..+|+.+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8999999999999999999999864 5666554 344555544
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.70 E-value=3.3e-08 Score=81.77 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=74.5
Q ss_pred HcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHH
Q 024712 144 AQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYA 207 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la 207 (263)
..|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|++|. .+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999999985 3444 456789999999999999999999999965 455554 688999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 208 DVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 208 ~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
.+|..+|+ +++|+.+|++++++
T Consensus 390 ~~~~~qg~---~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLEN---KAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHhccC---HHHHHHHHHHHHHH
Confidence 99999999 99999999999976
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.70 E-value=9.7e-08 Score=79.01 Aligned_cols=106 Identities=15% Similarity=-0.049 Sum_probs=84.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCCH---HH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQF-----PES---KRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDP---VL 134 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~ 134 (263)
...+..+|++++|+..++++++.. |++ ...+..+|.+|..+|+|++|+.++++++.. .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567899999999999999753 344 456788999999999999999999999974 45555 47
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCHHH---HHHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADHDA---WRELAEIY 176 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~---~~~la~~~ 176 (263)
+.++|.+|..+|++++|+..+++++++ .|+++.+ ..+|+.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 889999999999999999999999975 4666544 34455444
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.55 E-value=3.6e-06 Score=57.72 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 128 NPLDPVLHKRRVAIAKAQGNF------PTAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
.|++++.|..+.......|+. +.-+..|++++..-|-. ...|...|.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 345555555555554444554 44445555555443322 2233333333 23355555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
.++..+..+|...|+.-...|+ ..+|.+.+.+++.+.|
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCC
Confidence 5544445555555555555555 5555555555555554
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.52 E-value=1.5e-06 Score=58.17 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
...|.+....++.+..+.+++|.++.+..+... ++..++..+..+ | ..-+.++.+|..+++.|+|++|..+++.+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444344444444555555544443333 455555444443 2 23344555555555555555555555555
Q ss_pred HhhCCCCHHH
Q 024712 193 ILSQPTVPLY 202 (263)
Q Consensus 193 l~~~p~~~~~ 202 (263)
++..|++..+
T Consensus 101 L~~eP~n~QA 110 (126)
T 1nzn_A 101 LQTEPQNNQA 110 (126)
T ss_dssp HHHCTTCHHH
T ss_pred HHhCCCCHHH
Confidence 5555555443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.48 E-value=4.3e-06 Score=56.02 Aligned_cols=97 Identities=10% Similarity=-0.091 Sum_probs=80.1
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChhHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE---AEKAYSSLLEDN-P-LDPVLHKRRVAIAKAQGNFPTA 151 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A 151 (263)
......+...|.......+.+..+.+.+|.++........ ++.+++.++..+ | ...++++.+|..+++.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566777777777777888999999999998876655 999999999876 5 4557899999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH
Q 024712 152 IEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~la 173 (263)
..+++.+++..|.+..+.....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999988764433
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.36 E-value=1.4e-05 Score=54.77 Aligned_cols=120 Identities=14% Similarity=-0.002 Sum_probs=87.4
Q ss_pred CCCcHHHHHHHHHHHHHcCcH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 024712 94 FPESKRVGRLEGILLEAKGLW------AEAEKAYSSLLEDNPLD--------PVLHKRRVAIAKAQGNFPTAIEWLNKYL 159 (263)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l 159 (263)
.|.+++.|..........|+. +.-.+.|++++..-|-. ...|..++.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 477777777777777777777 77777778777765542 2355556644 45588999999999998
Q ss_pred HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 160 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
..+...+.+|...|..-.++|+...|.+.+.+++.+.|..... ...|..-.+.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~ 142 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQK 142 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence 8888888889999999999999999999999999988875443 333444444444
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.32 E-value=0.00053 Score=57.90 Aligned_cols=155 Identities=11% Similarity=-0.094 Sum_probs=117.7
Q ss_pred ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHhCC-CcHHHHHHH
Q 024712 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ---------CLDVAKDCIKVLQKQFP-ESKRVGRLE 104 (263)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~p-~~~~~~~~~ 104 (263)
+.++.+++..+...+... ...|+. .+|..+...+...+ ..++|..+|+.+....- -+...+..+
T Consensus 38 k~G~~~~A~~lf~~M~~~-----Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRN-----GVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp TSCCHHHHHHHHHHHHHH-----TCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHc-----CCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 455666777776666543 234433 23444444444433 36889999999887642 356678888
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccH
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 182 (263)
...+.+.|++++|..+++++.... .-+...+..+...+.+.|+.++|...+++..+.. .-+...|..+...+...|+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 899999999999999999998753 2357788899999999999999999999988753 22567788999999999999
Q ss_pred HHHHHHHHHHHhh
Q 024712 183 KQAAFCYEELILS 195 (263)
Q Consensus 183 ~~A~~~~~~al~~ 195 (263)
++|..++++..+.
T Consensus 192 d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 192 DKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.14 E-value=4.6e-05 Score=53.35 Aligned_cols=131 Identities=14% Similarity=0.078 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---CCCHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF---PE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN---PLDPVL 134 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 134 (263)
+......+++.|.|+.|+-....++... |+ ...+...+|+.++..++|..|...|++++... +.+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445667789999999998888766643 32 12477889999999999999999999997742 222222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (263)
...++. ...... ... .+.+.++.+.++.|+...|++++|+..++.. ...-..+.+...||.+|
T Consensus 103 ~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred cccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 111110 000000 111 2445678888999999999999999887653 22234577777777765
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.00 E-value=0.00014 Score=50.97 Aligned_cols=115 Identities=13% Similarity=-0.058 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CCCHH
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---------VLHKRRVAIAKAQGNFPTAIEWLNKYLETF---MADHD 167 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~ 167 (263)
+++.-...+...|.|+.|+-....++....+++ .++..+|..++..|+|..|...|++++... +....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455556666777777666666554422111 255666777777777777777777766542 12221
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
....++. ...+.. .... +.+.++.+.++.|+...|+ +++|+..++.+
T Consensus 102 ~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~---~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQ---DKDAIAILDGI 148 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTC---HHHHHHHHHTS
T ss_pred ccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCC---HHHHHHHHhcC
Confidence 1111100 000000 0111 3345788999999999999 99999998875
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.91 E-value=0.00078 Score=45.85 Aligned_cols=73 Identities=8% Similarity=-0.086 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 131 DPVLHKRRVAIAKAQGNF---PTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
...+.++++.++.+..+. .+++..++..+...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666666666665543 3566666666666663 345666677777777777777777777777777765543
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.89 E-value=0.0003 Score=47.26 Aligned_cols=72 Identities=8% Similarity=-0.087 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 132 PVLHKRRVAIAKAQGNF---PTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
+.+.+++|.++.+..+. .+++..++..+...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 45555666666555432 3466666666665552 355666666666666666666666666666666665543
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=0.0011 Score=45.18 Aligned_cols=76 Identities=7% Similarity=-0.107 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712 96 ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
-++.+.+.+|.++....+ ..+++.+++.++..+|. ..+.++.+|..+++.|+|++|..+.+.+++..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 466778888888888764 45788899998888875 44788888999999999999999999999999998776543
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00051 Score=60.36 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=85.4
Q ss_pred HcCC-hHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HH-cCcHHHHHHHHHHHHhc--------CCCC----------HH
Q 024712 76 DCQC-LDVAKDCIKVLQKQFPESKRVGRLEGILL--EA-KGLWAEAEKAYSSLLED--------NPLD----------PV 133 (263)
Q Consensus 76 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~--~~-~~~~~~A~~~~~~~~~~--------~p~~----------~~ 133 (263)
..+. ++.|+.+++++...+|.....+ ..+.+. .. ..+--+|+..+.+.++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 4555 5889999999999998654322 222222 11 23345677777776631 2232 23
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
.+...+..+...|+++-|+.+.++++...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45556778888999999999999999999999999999999999999999999877665
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.69 E-value=0.00035 Score=46.93 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 65 TLYEQVSIAAMDCQC---LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 65 ~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
.+-++.|.++..+.+ ..+++.+++.++...| ..-+.++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 333444444444332 2234444444444444 223444444555555555555555555555555544443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0019 Score=56.73 Aligned_cols=115 Identities=12% Similarity=-0.063 Sum_probs=87.5
Q ss_pred cCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChhHHHHHHHHHHHh--------cCCC----------HHH
Q 024712 111 KGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAIAK--AQ-GNFPTAIEWLNKYLET--------FMAD----------HDA 168 (263)
Q Consensus 111 ~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~~l~~--------~p~~----------~~~ 168 (263)
.++ ++.|+..+++....+|.....+ ..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 455 6889999999999988764332 2222222 22 2345688888877742 2222 345
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
+...+..+...|+|+-|+.+.++++...|.+...|..|+.+|..+|+ ++.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d---~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE---YEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc---HHHHHHHHhcC
Confidence 66678888899999999999999999999999999999999999999 99999777766
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.52 E-value=0.012 Score=47.79 Aligned_cols=165 Identities=12% Similarity=-0.013 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHH-cCcHHHHHHHHHHHHhcCCCC--H--H-
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG-----RLEGILLEA-KGLWAEAEKAYSSLLEDNPLD--P--V- 133 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~--~--~- 133 (263)
.+...+|..+...|+.++-..++.......+.-+.+. ..+-..+.. .+..+.-++++..+++..... . .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688889999999888888776655444322222 222222222 244555566666666532222 1 1
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCHH--
Q 024712 134 -LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL-- 201 (263)
Q Consensus 134 -~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~-- 201 (263)
.-..+|.+|+..|++.+|...+.+.++.... + .+++..-..+|...+++.++...+.++.... +.+|.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2337899999999999998888888764322 1 3455666778888899999999888887543 23333
Q ss_pred --HHHHHHHHHH-hcCCCCcHHHHHHHHHHhhcc
Q 024712 202 --YHLAYADVLY-TLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 202 --~~~~la~~~~-~~g~~~~~~~A~~~~~~al~~ 232 (263)
....-|..+. ..++ |..|..+|-.++.-
T Consensus 180 a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~ 210 (394)
T 3txn_A 180 GALDLQSGILHAADERD---FKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccC---HHHHHHHHHHHHhc
Confidence 3445577777 7888 99999998888744
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.036 Score=39.39 Aligned_cols=101 Identities=17% Similarity=-0.001 Sum_probs=73.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (263)
.++.|+++.|.++.+.+ ++...|..+|......|+++-|..+|+++-.. ..+..+|...|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHH
Confidence 36789999999998765 57889999999999999999999999886532 345556677788766554
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
..+.+.... + +.....+++.+|+++++++.|.+.
T Consensus 82 la~iA~~~g--~---~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE--D---FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT--C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc--c---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444443322 2 223345677889999999988654
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0054 Score=50.68 Aligned_cols=98 Identities=12% Similarity=-0.072 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--CCCHH----HH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPL----YH 203 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~ 203 (263)
.++..+|..+...|+++.|...|.++....... .+++..+..++...+++..+...+.++-... ..++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466778888888888888888888877654333 5667777788888888888888888876442 22222 23
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 204 LAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
...|.++...++ |..|...|..++...
T Consensus 212 ~~~gl~~l~~r~---f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRN---FKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSC---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCh---HHHHHHHHHHHhccC
Confidence 344556666777 888888888776553
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.14 Score=42.46 Aligned_cols=170 Identities=12% Similarity=0.028 Sum_probs=106.4
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH---HHHH-HcCcHHH--HHHHHHHHHhcCCC---
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG---ILLE-AKGLWAE--AEKAYSSLLEDNPL--- 130 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a---~~~~-~~~~~~~--A~~~~~~~~~~~p~--- 130 (263)
.+....+...+...+...++++...+.+..+.........+...+. .-+. .....+. -+............
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 3345667777888888899998888877766655443322221111 1111 1122111 11111111111111
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHhcccHHHHHHHHHHHHh---hCC
Q 024712 131 ----DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--AD----HDAWRELAEIYVSLQMYKQAAFCYEELIL---SQP 197 (263)
Q Consensus 131 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p 197 (263)
.......++.++...|++.+|...+.....-.- .+ .+++.....++...+++.+|...+.++.. ..+
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 123456789999999999999999988764321 11 45677788889999999999999888642 233
Q ss_pred CCHH----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 198 TVPL----YHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 198 ~~~~----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
.++. .+...|.++...++ |.+|..+|..++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQT 247 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhc
Confidence 3433 45667888888899 99999999988764
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.033 Score=39.59 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=68.0
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH
Q 024712 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 186 (263)
.....|+++.|.+..+.. ++...|..+|......|+++-|+.+|.++- + +..+..+|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHH
Confidence 456779999999887765 568899999999999999999999998763 2 233444555566665544
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
+.-+.+...... ..-..+++.+|+ ++++++.|.+.
T Consensus 81 kla~iA~~~g~~-----n~af~~~l~lGd---v~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTREDF-----GSMLLNTFYNNS---TKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHHHTC---HHHHHHHHHHT
T ss_pred HHHHHHHHCccH-----HHHHHHHHHcCC---HHHHHHHHHHC
Confidence 444444333221 112245566777 77777777654
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.86 E-value=0.028 Score=45.73 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-------cCCCcchhHH
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID-------LTGGKNTKAL 241 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~-------~~~~~~~~~~ 241 (263)
...++..+...|++.+|+..+..++..+|.+-.++..+..+++..|+ ..+|+..|+++-. +.|+.....+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34566777788888888888888888888888888888888888888 8888877777533 3555444444
Q ss_pred HhHH
Q 024712 242 FGIC 245 (263)
Q Consensus 242 ~~l~ 245 (263)
+.-+
T Consensus 251 ~~~i 254 (388)
T 2ff4_A 251 NERI 254 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.055 Score=48.09 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=40.3
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHhc
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY--------LETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------l~~~p~~~~~~~~la~~~~~~ 179 (263)
....|++++|.+..+. .++...|..+|..+...|+++.|+.+|.++ +.....+.+.+..++......
T Consensus 662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445666666554322 234555666666666666666666666553 111234444445555555555
Q ss_pred ccHHHHHHHHH
Q 024712 180 QMYKQAAFCYE 190 (263)
Q Consensus 180 g~~~~A~~~~~ 190 (263)
|++..|..+|.
T Consensus 737 ~~~~~A~~~~~ 747 (814)
T 3mkq_A 737 GKFNLAFNAYW 747 (814)
T ss_dssp TCHHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 55555555443
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.73 E-value=0.02 Score=40.24 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=79.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (263)
++-.+++.++-+-.- ..|..++....++..++-.|+|..++-.+.+ -+...+.+.-..|+...+++..|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677766543322 2455556777888888888999888765432 33455666678888889999999999
Q ss_pred HHHHHHh-----------------cCCCHHH-HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712 155 LNKYLET-----------------FMADHDA-WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (263)
Q Consensus 155 ~~~~l~~-----------------~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (263)
+++.+.- +|.+.+. +..+|.++-..|+-++|+.++.......|-.+.+
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 9988832 2334333 3456777777788888888888877777765544
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.71 E-value=0.037 Score=42.07 Aligned_cols=57 Identities=16% Similarity=0.042 Sum_probs=31.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC
Q 024712 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD 131 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 131 (263)
++.|++++|+..+...++..|.++.....+..++.-.|+|+.|...++-+..++|..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 445555555555555555555555555555555555555555555555555555544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.69 E-value=0.072 Score=43.30 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
+...++..+...|++.+++..+..++..+|.+..+|..+..++...|+..+|+..|+++-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677888899999999999999999999999999999999999999999999887653
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.019 Score=48.20 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
.+..+|++......++.|..+|.++....|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 45567888888888888888888888888888888888888888888888888888887765554555555555444
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.14 Score=45.52 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
......+...|.+++|+...+ ++... ..+....|++++|.+..+ ..++...|..+|..+...|+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 344445555666666654331 12211 223345666666665543 23455666666666666666
Q ss_pred HHHHHHHHHHH
Q 024712 182 YKQAAFCYEEL 192 (263)
Q Consensus 182 ~~~A~~~~~~a 192 (263)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666666654
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.45 E-value=0.024 Score=47.58 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
.+..+|.+......+..|..+|.+|..+.|++...+..||.+....|+.-+|+-+|.+++....-.+.+..++...+-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5567888888888899999999999999999999999999999999999999999999997766667777777666654
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.35 E-value=0.088 Score=40.03 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=76.1
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH------------------
Q 024712 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA------------------ 168 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------------ 168 (263)
..++.|+.++|++.+...++.+|.+......+..+++-.|+++.|...++-+.+++|.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vf 85 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 85 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999998888775321
Q ss_pred --------------HH---HHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 169 --------------WR---ELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 169 --------------~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
|. .-+......|+.++|...-.++++..|..
T Consensus 86 aG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 86 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11 22444566799999999999999887654
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.32 E-value=0.25 Score=46.15 Aligned_cols=141 Identities=10% Similarity=-0.019 Sum_probs=99.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---------------------
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------------------- 128 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------- 128 (263)
+...+...+.++-+.. .....|.++...+.+|.++...|++++|..+|+++-..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4444556677765544 334567778788999999999999999999999874310
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CH----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 129 --PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 129 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
...+..|..+..++...|.++.+++..+.+++..+. +. ..|..+-..+...|+|++|...+...-. ...-..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHH
Confidence 111245667778888899999999999999987543 33 2677888889999999999777754321 122345
Q ss_pred HHHHHHHHHHhcCC
Q 024712 202 YHLAYADVLYTLGG 215 (263)
Q Consensus 202 ~~~~la~~~~~~g~ 215 (263)
+...+-..++..|.
T Consensus 973 cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 55555555555555
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.31 E-value=0.16 Score=46.29 Aligned_cols=100 Identities=10% Similarity=-0.089 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKR 137 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 137 (263)
....|..+...+.+.|+.++|..+|..+.+. ..-+...+..+-..+.+.|++++|.++|+++.+.. .-+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3445777888899999999999999776532 23356678888889999999999999999998754 235677888
Q ss_pred HHHHHHHcCCh-hHHHHHHHHHHHhc
Q 024712 138 RVAIAKAQGNF-PTAIEWLNKYLETF 162 (263)
Q Consensus 138 l~~~~~~~g~~-~~A~~~~~~~l~~~ 162 (263)
+..++.+.|+. ++|...+++..+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888998885 67889999888754
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.30 E-value=0.23 Score=40.31 Aligned_cols=113 Identities=17% Similarity=-0.019 Sum_probs=72.9
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CCCH----HHH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---MADH----DAW 169 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~----~~~ 169 (263)
.+|..|+..|+|.+|.+.+.++...-. ++ .+++..-..+|...+++.++...+.++.... +.++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 678888888888888888877776311 11 2456666777888888888888888876543 1233 233
Q ss_pred HHHHHHHH-hcccHHHHHHHHHHHHhhCCCC--H---HHHHHHHHHHHhcCC
Q 024712 170 RELAEIYV-SLQMYKQAAFCYEELILSQPTV--P---LYHLAYADVLYTLGG 215 (263)
Q Consensus 170 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~--~---~~~~~la~~~~~~g~ 215 (263)
..-|.++. ..++|..|...|-+++...... + .+...++-+-...++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 45577777 7888888888888887443221 2 233334445555555
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.19 Score=41.63 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH---hcCCCH--
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLE---TFMADH-- 166 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~-- 166 (263)
..+...++.++...|++.+|...+..+.... ..+ ...+.....++...+++.+|...+.++.. ..+..+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3455678999999999999999998886531 111 35677788889999999999999988743 233333
Q ss_pred --HHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 167 --DAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 167 --~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..+...|.++...++|.+|..+|..++..
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34566788888899999999999988764
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.86 E-value=0.37 Score=43.99 Aligned_cols=98 Identities=9% Similarity=-0.123 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHH
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELA 173 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la 173 (263)
..+..+-..+.+.|+.++|..+|....+. -.-+...|..+...+.+.|+.++|...|++..+.. .-|...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35677788899999999999999775432 23357788999999999999999999999988752 23566777788
Q ss_pred HHHHhccc-HHHHHHHHHHHHhhC
Q 024712 174 EIYVSLQM-YKQAAFCYEELILSQ 196 (263)
Q Consensus 174 ~~~~~~g~-~~~A~~~~~~al~~~ 196 (263)
.++.+.|+ .++|..++++.....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888887 478889999888654
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.017 Score=48.26 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=58.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--h---------CCCcHHHHHHHHHHHHHcCcHHHHH----------HHHHHHHh--
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQK--Q---------FPESKRVGRLEGILLEAKGLWAEAE----------KAYSSLLE-- 126 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~--~---------~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~~~~-- 126 (263)
....+++.+++++|..+...++. . ++-.+.+|+..+.++...|+..... ..+-.++.
T Consensus 142 ~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta 221 (523)
T 4b4t_S 142 VQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA 221 (523)
T ss_dssp -------------------------------------------------------------CHHHHHHHHTHHHHHHHHC
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Confidence 34446678899998888765551 1 2234566777777777777654421 12222222
Q ss_pred ---cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 127 ---DNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 127 ---~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
.++. ....+..+-..|...+.+++|..+..++. +|.+ ...++.+|.++..+++|.+|.+++..|+..
T Consensus 222 ~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 222 SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2222 23577888899999999999999999985 5533 445678999999999999999999999988
Q ss_pred CCCC
Q 024712 196 QPTV 199 (263)
Q Consensus 196 ~p~~ 199 (263)
.|.+
T Consensus 300 ap~~ 303 (523)
T 4b4t_S 300 APHN 303 (523)
T ss_dssp CSCS
T ss_pred CCcc
Confidence 7754
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.083 Score=43.57 Aligned_cols=100 Identities=12% Similarity=-0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCH----HH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADH----DA 168 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~----~~ 168 (263)
..+...+|..+...|++++|.+.|.++...... -.+.+.....++...+++..+...+.++..... .++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346778999999999999999999998875322 246778888888899999999999999876532 222 23
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
....|.++...++|..|...|..++....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 34557777788999999999988876544
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.23 Score=41.61 Aligned_cols=128 Identities=10% Similarity=-0.020 Sum_probs=57.9
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCChhHH----------HHHHHHHHHh
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLE-----------DNPLDPVLHKRRVAIAKAQGNFPTA----------IEWLNKYLET 161 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~-----------~~p~~~~~~~~l~~~~~~~g~~~~A----------~~~~~~~l~~ 161 (263)
..-..+...+++++|.++-..++. +++-...+|+.++.++...|+.... ...+-.+++.
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt 220 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI 220 (523)
T ss_dssp --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence 334445667889988887766551 1333345677777777777765542 2233333332
Q ss_pred -----cCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 162 -----FMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 162 -----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
++.. ...+..+-..|...+.|++|..+..++. .|.. ...++.+|.++...++ |.+|.+++..
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~ 295 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIA 295 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence 2222 4566778888999999999999999885 3422 2356778999999999 9999999999
Q ss_pred hhccCCC
Q 024712 229 TIDLTGG 235 (263)
Q Consensus 229 al~~~~~ 235 (263)
|+...|.
T Consensus 296 A~rkap~ 302 (523)
T 4b4t_S 296 AIRKAPH 302 (523)
T ss_dssp HTSSCSC
T ss_pred HHHhCCc
Confidence 9998885
No 257
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.69 E-value=0.74 Score=32.46 Aligned_cols=187 Identities=13% Similarity=0.045 Sum_probs=121.8
Q ss_pred HHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712 31 VKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA 110 (263)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~ 110 (263)
.+..+.++.+.++-++.-+... .| .--..++..++-.|++..++-++.. -+.....+..+.+|..
T Consensus 10 ~Ks~kY~dYdt~~fLsa~L~~~-------~~---eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~k 74 (242)
T 3kae_A 10 CKSIRYRDYETAIFLAACLLPC-------KP---EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKK 74 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--------------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHccC-------Ch---HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHH
Confidence 3445567777777777666544 22 2223356677889999988877642 3456777888999999
Q ss_pred cCcHHHHHHHHHHHHhc-----------------CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712 111 KGLWAEAEKAYSSLLED-----------------NPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (263)
Q Consensus 111 ~~~~~~A~~~~~~~~~~-----------------~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (263)
..+|..|+..++++++- +|.+.. .+..+|.++...|+.++|+.++.......|-.+.+-..+
T Consensus 75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 99999999999999942 344443 556789999999999999999999888776554332110
Q ss_pred H-----------HHH------HhcccHHHHH--------HHHHHHHhhCCCCHH-HHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712 173 A-----------EIY------VSLQMYKQAA--------FCYEELILSQPTVPL-YHLAYADVLYTLGGVDNILLAKKYY 226 (263)
Q Consensus 173 a-----------~~~------~~~g~~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~~~~A~~~~ 226 (263)
- ++. .....+.... ...++-.+.-|.-.. .....+.-++.+|- .++....|
T Consensus 155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~---~d~s~~lf 231 (242)
T 3kae_A 155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGM---NDKSKACF 231 (242)
T ss_dssp HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhccc---chhHHHHH
Confidence 0 000 0001111122 222333344455433 34456788999999 99999999
Q ss_pred HHhhccCCC
Q 024712 227 ASTIDLTGG 235 (263)
Q Consensus 227 ~~al~~~~~ 235 (263)
...-..+|.
T Consensus 232 ~~lR~kDP~ 240 (242)
T 3kae_A 232 ELVRRKDPM 240 (242)
T ss_dssp HHHHHHSTT
T ss_pred HHHHhcCCC
Confidence 988888773
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.69 E-value=1.5 Score=40.99 Aligned_cols=118 Identities=11% Similarity=-0.117 Sum_probs=81.8
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---------------------
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------------------- 162 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------------------- 162 (263)
+...+...+.++-+.+ .+..-|.++...+.+|.++...|++++|..+|+++-.-.
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555566655443 334456677777889999999999999999998853210
Q ss_pred --CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 163 --MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PL----YHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 163 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~----~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
..-+..|..+..++...|.++.+++..+.|++..+.+ .. .|.++=..+...|+ |++|...+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~ 963 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMV 963 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHh
Confidence 1113456667778888899999999999999776433 32 46666677888899 8888766644
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.63 E-value=6.2 Score=34.16 Aligned_cols=158 Identities=9% Similarity=-0.053 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
+.....++......+...++...+.......+++. ....++....+.|+++.|...+..+-..........+-+|..+.
T Consensus 252 ~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~ 330 (618)
T 1qsa_A 252 QELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL 330 (618)
T ss_dssp HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHH
Confidence 33444455444455545566666666554433333 23333344556688888888887765544445666777888888
Q ss_pred HcCChhHHHHHHHHHHHhc-----------------------CCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 144 AQGNFPTAIEWLNKYLETF-----------------------MAD-----HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~-----------------------p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..|+.++|...|+++.... +.. ...-...+..++..|....|...+..++..
T Consensus 331 ~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 331 ERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 8888888888887765410 000 001233455666777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712 196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (263)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 227 (263)
. ++.-...++.+....|. +..++....
T Consensus 411 ~--~~~~~~~la~~a~~~~~---~~~~v~~~~ 437 (618)
T 1qsa_A 411 K--SKTEQAQLARYAFNNQW---WDLSVQATI 437 (618)
T ss_dssp C--CHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHCCC---hHHHHHHHH
Confidence 2 23444566777777777 666665443
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.32 E-value=4 Score=37.37 Aligned_cols=113 Identities=8% Similarity=-0.128 Sum_probs=59.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHcCC
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLD--PVLHKRRVAIAKAQGN 147 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~--~~~~~~l~~~~~~~g~ 147 (263)
...+...|.++-+. .+..-.|.++...+.+|.++...|++++|..+|+++-.-- ..+ .........+.-
T Consensus 817 ~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~---- 888 (950)
T 4gq2_M 817 VEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE---- 888 (950)
T ss_dssp HHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH----
T ss_pred HHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC----
Confidence 33444455554332 2344456666666777777777777777777777664311 010 000000000000
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCCHH
Q 024712 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPL 201 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 201 (263)
..+........|..+..++...+-++-++...+.|+.. .++++.
T Consensus 889 ----------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 889 ----------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp ----------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ----------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00001111236667788888888899898888888864 344544
No 261
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.45 E-value=7.4 Score=35.64 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=71.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-C--------------------
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS-Q-------------------- 196 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-------------------- 196 (263)
+...+...|.++-+ ...+...|.++..-+.+|.++...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 45555666766543 3456677888888899999999999999999999876421 0
Q ss_pred CCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhH
Q 024712 197 PTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGI 244 (263)
Q Consensus 197 p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l 244 (263)
+.. ...|..+..++...+- ++-++.+.+.|++.....+......+
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a---~~~vi~fA~lAI~~~~~dd~~l~~~l 938 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESA---YIDALEFSLLADASKETDDEDLSIAI 938 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCSCCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCCccchHHH
Confidence 011 1367788899999999 99999999999975433244333333
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.21 E-value=12 Score=32.37 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=81.4
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
+.......+.+.|...+.+.....+.+.. .+..++.-....+...++...+.+.....+++ ......+......|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCC
Confidence 44444456788888888877654433332 22233333333443667778888766544433 33333344455679
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
+++.|...+...-...+..+...+-+|.++...|+ .++|..+|+++.+
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence 99999999977655444567788999999999999 9999999999875
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.79 E-value=8.2 Score=35.14 Aligned_cols=11 Identities=9% Similarity=-0.173 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 024712 220 LLAKKYYASTI 230 (263)
Q Consensus 220 ~~A~~~~~~al 230 (263)
.+++..+.+..
T Consensus 646 ~~aid~L~~L~ 656 (963)
T 4ady_A 646 QSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 45555555543
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.83 E-value=17 Score=28.42 Aligned_cols=150 Identities=6% Similarity=-0.043 Sum_probs=77.8
Q ss_pred HHHcCChHHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh---c--CCCCHHHHHHHHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQF----P--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---D--NPLDPVLHKRRVAIA 142 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~----p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~--~p~~~~~~~~l~~~~ 142 (263)
....|++-+|-+.++.+.... . +-.++.+.-+..+...|++..|..+..-.++ . .|-+......+..++
T Consensus 23 ~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345567777766666555542 1 1223344445566666777666554322222 1 233344455555555
Q ss_pred HHcCChh-HHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-
Q 024712 143 KAQGNFP-TAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL- 213 (263)
Q Consensus 143 ~~~g~~~-~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 213 (263)
......+ .=..++++++... -.++..+..+|..+...|++.+|...|-. -+.+++..+..+-.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~---~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML---GTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh---CCCccHHHHHHHHHHHHHhc
Confidence 4422111 2234445555431 24678888889998888888888887741 1112344443333333333
Q ss_pred --CCCCcHHHHHHHHHHh
Q 024712 214 --GGVDNILLAKKYYAST 229 (263)
Q Consensus 214 --g~~~~~~~A~~~~~~a 229 (263)
|. ..++--+..++
T Consensus 180 ~~~~---~~e~dlf~~Ra 194 (312)
T 2wpv_A 180 DDIE---DSTVAEFFSRL 194 (312)
T ss_dssp TCCC---HHHHHHHHHHH
T ss_pred CCCC---cchHHHHHHHH
Confidence 55 55555555554
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.88 E-value=20 Score=28.02 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712 130 LDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
.++..+..+|..+...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 456778888888888888877776664
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=79.40 E-value=7 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=11.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
+|..+...|++++|...|-+|+...|.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444443
No 267
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=79.05 E-value=7.7 Score=22.89 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=19.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (263)
.+|..+...|++++|..+|-+|+...|.....
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 45556666666666666666666666655443
No 268
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=78.89 E-value=14 Score=25.69 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--H-HHHHH------HHHHHHHcCChhHHHHHHHHHHHh
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLD--P-VLHKR------RVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~-~~~~~------l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
+..+..++..|+|=+|.++++.+....+.. . ..+.. .|......|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455667777788888888888888776544 1 22222 233445567888888888887764
No 269
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=75.85 E-value=13 Score=30.71 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=62.5
Q ss_pred chHHHHH---HHHHHHHHcCChHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712 62 DVWTLYE---QVSIAAMDCQCLDVAKDCIKVLQKQFP----------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (263)
Q Consensus 62 ~~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 127 (263)
..+.++. ++-.+|++.++..-+..+++.+-...+ .-....+.+|.++...++|.+|.+.+..|+..
T Consensus 171 kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~l 250 (455)
T 3t5v_B 171 KQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSL 250 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3444443 466789999999999999877655432 22456788999999999999999999999998
Q ss_pred CCCC-----HH-----HHHHHHHHHHHcCChhH
Q 024712 128 NPLD-----PV-----LHKRRVAIAKAQGNFPT 150 (263)
Q Consensus 128 ~p~~-----~~-----~~~~l~~~~~~~g~~~~ 150 (263)
.|.. .. ++..+.-+-.-.|+...
T Consensus 251 cp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~ 283 (455)
T 3t5v_B 251 LNLPLTNQAITRNGTRILNYMIPTGLILGKMVK 283 (455)
T ss_dssp HHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCccccchhhhhHHHHHHHHHHHHHHHcCCCCC
Confidence 6654 11 23334444455676543
No 270
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=75.66 E-value=17 Score=26.12 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=56.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHh
Q 024712 28 LCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC--------------LDVAKDCIKVLQKQ 93 (263)
Q Consensus 28 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~ 93 (263)
.+..|.....+.....+....++..........+....+...+..+ ..|+ ++.|+.+++.+-..
T Consensus 30 c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI--~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e 107 (211)
T 3bqo_A 30 CRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRI--AAGKTLDAQFENDERITPLESALMIWGSIEKE 107 (211)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH--HTTTCTTEECSSSTTCCHHHHHHHHHTTSCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHH--HcCCCCCCccCCCCCCChHHHHHHHHHHHHHh
Confidence 4566666666666667777776644211111111111111112211 2222 45566666655444
Q ss_pred CCCcH-----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 94 FPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 94 ~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
.+.-. .+......++...|.+++|.+.+++.++.++++......|..+-..
T Consensus 108 ~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 108 HDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 43110 1222344567888999999999999888777666555555544333
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=74.28 E-value=11 Score=27.34 Aligned_cols=88 Identities=11% Similarity=-0.029 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA-----WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
...+.+|.+++..++|.+|...+..|+...|.+... +..+.-+-...|+... ...+++ .+. ..+..+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L~ 87 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEVT 87 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHHH
Confidence 467788999999999999999999999998876432 2333444455676543 233332 121 1355565
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 024712 208 DVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 208 ~~~~~~g~~~~~~~A~~~~~~ 228 (263)
.+ .+.|+...++++++.++.
T Consensus 88 ~A-vr~Gdl~~f~~~l~~~~~ 107 (203)
T 3t5x_A 88 RA-VSEGNLLLLHEALAKHEA 107 (203)
T ss_dssp HH-HHHTCHHHHHHHHHHTHH
T ss_pred HH-HHhCCHHHHHHHHHHhHH
Confidence 44 467873334444444443
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.26 E-value=15 Score=30.38 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcC--------CC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCC
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLETFM--------AD--HDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTV 199 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 199 (263)
..+-.+|++.|+..-+...++..-...+ .. ....+.+|.++...++|.+|...+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3445666777777666666644322211 11 344566777777777777777777777766 5543
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.90 E-value=53 Score=30.06 Aligned_cols=157 Identities=10% Similarity=-0.060 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK--RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
.+-..+|.++...++- ++...+...+....... .+-+.+|.++...|+-+....++..+.+...+...-...+|..+
T Consensus 456 gAaLGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 456 GASLGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 3444577776666653 56666666665433211 34456777888888876666666666653322222223334444
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHH----HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAW----RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (263)
...|+.+.+....+.... . .++... +.+|..|...|+...-..++..+..-..++..-...+|..+...|+
T Consensus 535 l~~g~~e~~~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--- 609 (963)
T 4ady_A 535 INYGRQELADDLITKMLA-S-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--- 609 (963)
T ss_dssp HTTTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---
T ss_pred hhCCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---
Confidence 466777766666555443 2 333333 3467777788986544446666654332333333334444555676
Q ss_pred HHHHHHHHH
Q 024712 219 ILLAKKYYA 227 (263)
Q Consensus 219 ~~~A~~~~~ 227 (263)
.+.+...+.
T Consensus 610 ~e~v~rlv~ 618 (963)
T 4ady_A 610 YTTVPRIVQ 618 (963)
T ss_dssp CSSHHHHTT
T ss_pred HHHHHHHHH
Confidence 444444443
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.63 E-value=21 Score=24.82 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
+..+...|..+...|+ +.+|...|..+++..
T Consensus 96 AlfY~~wA~~lE~~~~---~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEAREN---FRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC
Confidence 4445555555555555 555555555555543
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.58 E-value=13 Score=26.95 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 96 (263)
...+.+|..++..++|.+|...+..++...|.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 33444566666666666666666666666554
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.91 E-value=22 Score=24.20 Aligned_cols=120 Identities=11% Similarity=-0.070 Sum_probs=59.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH-----------HHHHH---------cCcHHHHHHHHHHHHhcCCC
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG-----------ILLEA---------KGLWAEAEKAYSSLLEDNPL 130 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a-----------~~~~~---------~~~~~~A~~~~~~~~~~~p~ 130 (263)
|.-..-.|..++..+++.+.....|-+..-|+.=- .++.. .|+...-+.++-+.- ..
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n---~~ 90 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN---TL 90 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT---CC
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc---ch
Confidence 34445678889999998888887664332222100 01111 133333333332211 11
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
......--..+..+|+.++-.+.+...+...+-++..+..+|.+|.+.|+..+|.+++.+|-+
T Consensus 91 -se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 91 -NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 111111122334555555555555554444555566666666666666666666666666654
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.76 E-value=39 Score=26.65 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHH-------HH---------hhCCCCHHHHHHHH-HHHHhcCCCCcHHHHHHH
Q 024712 163 MADHDAWRELAEIYVSLQMYKQAAFCYEE-------LI---------LSQPTVPLYHLAYA-DVLYTLGGVDNILLAKKY 225 (263)
Q Consensus 163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------al---------~~~p~~~~~~~~la-~~~~~~g~~~~~~~A~~~ 225 (263)
-.++..+..+|..|...+++.+|...|-- .+ +..|.....+...| -.|...++ ...|...
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n---~~~A~~~ 209 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVAN---VRAANTA 209 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence 35688888899999988888888777621 00 11233334433333 35566777 8888775
Q ss_pred HHHhh
Q 024712 226 YASTI 230 (263)
Q Consensus 226 ~~~al 230 (263)
+....
T Consensus 210 ~~~f~ 214 (336)
T 3lpz_A 210 YRIFT 214 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=69.60 E-value=25 Score=24.38 Aligned_cols=60 Identities=7% Similarity=-0.018 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCc--H-H-----HH-HHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPES--K-R-----VG-RLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--~-~-----~~-~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...+..++..|+|-+|=++++.+....+.. . . +. ...|..+.+.|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345777888899999999999999887643 2 1 22 23344567789999999999999873
No 279
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.50 E-value=10 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=14.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al 193 (263)
...+..+...|+|++||++.+++.
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345556666666666666555543
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.68 E-value=24 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+..|...|..+...|++.+|..+|+..++.
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444444444444555555555555554443
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=68.11 E-value=33 Score=25.12 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhCCCcHHH--------HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 80 LDVAKDCIKVLQKQFPESKRV--------GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~--------~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
++.|+.+++.+-...+-+... ......++...|.|++|.+.+++.++.+|.+......|..+-....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 567888888888877632211 1233446678899999999999999877666666666655544443
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=65.73 E-value=12 Score=23.32 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=16.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (263)
.+|..+...|+++.|+.+|-+|+...|..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34555555666666666666666555543
No 283
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=63.45 E-value=21 Score=31.19 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 227 (263)
+.....|...+..|+|.-|.++...++..+|++..+...++.+|.++|....--..+.+|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~~~r~~yl 510 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENAGWRNSYL 510 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 3455677888899999999999999999999999999999999999885332333444443
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.24 E-value=34 Score=25.01 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 115 AEAEKAYSSLLEDNPLDPV--------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 115 ~~A~~~~~~~~~~~p~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
+.|+..++.+-...+-... +-.....++++.|.+++|.+.+++....+|.+......|..+-...
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 5566666666555443221 1123344566777777777777777776666655555555554333
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.82 E-value=17 Score=22.42 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (263)
.+..+...+..++..|.|++|+++.+++..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566678888888888888877766553
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=61.05 E-value=12 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=21.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35777777888888888877777777665
No 287
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.36 E-value=56 Score=26.14 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
.+..+|..+++.+++.+|+..+-.+
T Consensus 298 PYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 298 PYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhhhhhhhcchHHHHHHHHHHH
Confidence 3444555555555555555555443
No 288
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=58.17 E-value=31 Score=21.41 Aligned_cols=55 Identities=15% Similarity=0.026 Sum_probs=27.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCH-HHH-----HHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLH-----KRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
.|..++..|+|=+|.+.++.+....|... ..+ ...|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34555556666666666666666554321 111 1122233344555 5666666554
No 289
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=57.75 E-value=26 Score=30.55 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=20.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK 111 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~ 111 (263)
|...+..|+|.-|.++++.++..+|++..+...++.+|.+.
T Consensus 456 a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l 496 (658)
T 2cfu_A 456 ARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL 496 (658)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555444444
No 290
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=56.33 E-value=59 Score=24.12 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIA 142 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~ 142 (263)
...++...-+.++|++...+.+++.+.++. +..-...+..+|-.. |....+...+..+-.... .+. ....+..-|
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~-~~~~~i~~y 86 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE-DKLKMIREY 86 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCch-HHHHHHHHH
Confidence 345677777889999999999999987763 444555556555432 444444444433222110 111 111111111
Q ss_pred HHcCCh-------hHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhc-----c-----cHHHHHHHHHHHHh-----hC
Q 024712 143 KAQGNF-------PTAIEWLNKYLETFMADHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL-----SQ 196 (263)
Q Consensus 143 ~~~g~~-------~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~-----g-----~~~~A~~~~~~al~-----~~ 196 (263)
... -- .+.+..+.+.+--...+++ .+-..|..|... | -.+.|...|++|+. +.
T Consensus 87 r~k-ie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~ 165 (234)
T 2br9_A 87 RQM-VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP 165 (234)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 110 01 1222223332211122221 123345444322 2 23467778887773 56
Q ss_pred CCCHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 197 PTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 197 p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
|.+|. ...+.+..|+. .|+ .++|...-++++.
T Consensus 166 pthPirLgLaLN~SVF~yEil~~---~~~A~~lAk~afd 201 (234)
T 2br9_A 166 PTHPIRLGLALNFSVFYYEILNS---PDRACRLAKAAFD 201 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 77764 34555555555 688 8888877776664
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.59 E-value=56 Score=23.62 Aligned_cols=71 Identities=13% Similarity=-0.026 Sum_probs=51.1
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 130 (263)
.+|....+|...+..+ ..++..++..+|..+....- ..+..+...|..+...|++.+|.++|+..++..-.
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3555566666655543 23446788888888887664 46667778888888999999999999999886543
No 292
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.41 E-value=13 Score=22.30 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=15.2
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.+|+-+...|+|+.|+.+|+.++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 455666666666666666666654
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.19 E-value=22 Score=21.45 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=10.9
Q ss_pred HHHHcCcHHHHHHHHHHHHh
Q 024712 107 LLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~ 126 (263)
-.-..|++++|+.+|..+++
T Consensus 28 e~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 33455666666665555544
No 294
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=53.08 E-value=71 Score=24.11 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAK-GLWAEAEKAYSSLLED--NPLDPVLHKRRVAI 141 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~ 141 (263)
-+..+|...-+.++|++.....+++.+.++. +.+=...+..+|-.. |....+...+..+... ...+.. ...+..-
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~-~~~~i~~ 111 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED-KLKMIRE 111 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHH-HHHHHHH
Confidence 3445677777889999999999998887763 444555566665432 4444454444433322 111211 1122221
Q ss_pred HHHc--CC----hhHHHHHHHHHHHhcCCCHHH----HHHHHHHHHhc-----cc-----HHHHHHHHHHHHh-----hC
Q 024712 142 AKAQ--GN----FPTAIEWLNKYLETFMADHDA----WRELAEIYVSL-----QM-----YKQAAFCYEELIL-----SQ 196 (263)
Q Consensus 142 ~~~~--g~----~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~-----g~-----~~~A~~~~~~al~-----~~ 196 (263)
|... .. -.+.+..+.+.+--...+++. +-..|..|... |+ .+.|...|++|+. +.
T Consensus 112 yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~ 191 (261)
T 3ubw_A 112 YRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP 191 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1110 00 012222333322112222221 22455555322 22 3567778887764 56
Q ss_pred CCCHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 197 PTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 197 p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
|.+|. ...+.+..|+. +++ .++|....++++.
T Consensus 192 pThPirLGLaLNfSVFyYEIln~---p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 192 PTHPIRLGLALNFSVFYYEILNS---PDRACRLAKAAFD 227 (261)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 77764 34555566555 578 8888877666653
No 295
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=52.01 E-value=29 Score=20.91 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=8.9
Q ss_pred HhcccHHHHHHHHHHHH
Q 024712 177 VSLQMYKQAAFCYEELI 193 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al 193 (263)
-..|+|++|+.+|.+++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555555555544
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=51.81 E-value=13 Score=26.78 Aligned_cols=38 Identities=8% Similarity=-0.064 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE 104 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 104 (263)
-.+...++++.|.+++|.+++++.....+.+......+
T Consensus 120 k~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 120 KIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 33456678999999999999999988877555444333
No 297
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=51.31 E-value=76 Score=23.95 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC---C-CcHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF---P-ESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDN--PLDPVLHKRRV 139 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---p-~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~--p~~~~~~~~l~ 139 (263)
+..++...-+.++|++...+.+++.+.. + -+..-...+..+|-.. |....+...+..+-... ..+. ....+.
T Consensus 31 ~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~-~~~~~i 109 (260)
T 2npm_A 31 NVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAE-DASKMC 109 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcH-HHHHHH
Confidence 4457777788899999999999999876 4 3445555666666443 44444444444332221 1121 111121
Q ss_pred HHHHHcCCh-------hHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhc-----c-----cHHHHHHHHHHHHh----
Q 024712 140 AIAKAQGNF-------PTAIEWLNKYLETFMADHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL---- 194 (263)
Q Consensus 140 ~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~-----g-----~~~~A~~~~~~al~---- 194 (263)
.-|.. .-- .+.+..+.+.+--...+++ .+-..|..|... | -.+.|...|++|+.
T Consensus 110 ~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~ 188 (260)
T 2npm_A 110 GKYRS-KVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKD 188 (260)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 001 1222333332221222221 123345554322 1 23567788888875
Q ss_pred hCCCCHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 195 SQPTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 195 ~~p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
+.|.+|. ...+.+..|+. +++ .++|....++++.
T Consensus 189 L~pthPirLGLaLNfSVFyYEiln~---~~~Ac~lAk~Afd 226 (260)
T 2npm_A 189 LEPTHPIRLGLALNFSVFHYEILNE---PRAAIDMAKEAFE 226 (260)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 5666664 34555565655 688 8888877777664
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.28 E-value=66 Score=23.22 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 149 PTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 149 ~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
.++..+|.-.... .-..+..|...|..+...|++.+|..+|+..++..
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444444432 33334455555555555555555555555555543
No 299
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=50.05 E-value=78 Score=23.70 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcC-----CCCHHHHH-HH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDN-----PLDPVLHK-RR 138 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~-----p~~~~~~~-~l 138 (263)
+..++...-+.++|++.....+++....+. +..-...+..+|-.. |....+...+..+.... ........ ..
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr 86 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYR 86 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 345677778889999999999999887763 444555566665432 44444555444333221 11111100 00
Q ss_pred HHHHHHcC-ChhHHHHHHHHHHHhcCCCH----H--HHHHHHHHHHhc-----c-----cHHHHHHHHHHHHh-----hC
Q 024712 139 VAIAKAQG-NFPTAIEWLNKYLETFMADH----D--AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL-----SQ 196 (263)
Q Consensus 139 ~~~~~~~g-~~~~A~~~~~~~l~~~p~~~----~--~~~~la~~~~~~-----g-----~~~~A~~~~~~al~-----~~ 196 (263)
..+-.... --.+.+..+.+.+--...++ . .+-..|..|... | -.+.|...|+.|+. +.
T Consensus 87 ~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~ 166 (248)
T 3uzd_A 87 EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQ 166 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 00000000 00122333333321111112 1 123455555322 2 23567778887764 56
Q ss_pred CCCHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 197 PTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 197 p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
|.+|. ...+.+..|+. +++ .++|....++++.
T Consensus 167 pthPirLGLaLNfSVFyYEIln~---~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 167 PTHPIRLGLALNYSVFYYEIQNA---PEQACHLAKTAFD 202 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 77764 34555555555 577 8888777666643
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.97 E-value=16 Score=21.82 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
...+|+=+...|+ |+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~Gn---Ydta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGN---YDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---hHHHHHHHHHHHHH
Confidence 3456777777777 77777777777653
No 301
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=49.85 E-value=97 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
...+..+|.++++.+++.+|+..+-.+-
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHHH
Confidence 4456667777777777777777776654
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=49.73 E-value=66 Score=25.75 Aligned_cols=79 Identities=11% Similarity=-0.025 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCCHHHHHHH
Q 024712 67 YEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRR 138 (263)
Q Consensus 67 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l 138 (263)
-.++...+++.| .|.-|+..+-.+-+..|.... ..++.+|.+++.. +..+...+..+
T Consensus 238 Qq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~l~L~~~AI~sa~~yY~n~HvYPYtyl 302 (472)
T 3re2_A 238 QQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGR---------------PPAEELFKEAITVAKREYSDHHIYPYTYL 302 (472)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 345666666665 566677777777666663111 1133444444332 23456677788
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
|-.+++.+++.+|+..+-.+-.
T Consensus 303 gGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 303 GGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhcchHHHHHHHHHHHHH
Confidence 8899999999999999887764
No 303
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.55 E-value=27 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=9.5
Q ss_pred HHcCcHHHHHHHHHHHHh
Q 024712 109 EAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~ 126 (263)
-..|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 444555555555555543
No 304
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=48.51 E-value=85 Score=23.69 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF--PE-SKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNP--LDPVLHKRRVA 140 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~ 140 (263)
+..++...-+.++|++...+.+++.+.+ +. +..-...+..+|-.. |....+...+..+-.... .+. ....+..
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~-~~~~~i~ 89 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE-EHVNSIR 89 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcH-HHHHHHH
Confidence 4456777788899999999999999977 52 444555555555432 444444444444322211 111 1112222
Q ss_pred HHHHcCCh-------hHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhc-----c-----cHHHHHHHHHHHHh-----
Q 024712 141 IAKAQGNF-------PTAIEWLNKYLETFMADHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL----- 194 (263)
Q Consensus 141 ~~~~~g~~-------~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~-----g-----~~~~A~~~~~~al~----- 194 (263)
-|... -. .+.+..+.+.+--...+++ .+-..|..|... | -.+.|...|+.|+.
T Consensus 90 ~yr~k-ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 168 (260)
T 1o9d_A 90 EYRSK-IENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTE 168 (260)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12111 01 1222333332221222221 123345554322 2 23467778888774
Q ss_pred hCCCCHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 195 SQPTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 195 ~~p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
+.|.+|. ...+.+..|+. +++ .++|....++++.
T Consensus 169 L~pthPirLGLaLNfSVFyYEiln~---~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 169 LAPTHPIRLGLALNFSVFYYEILNS---PDRACNLAKQAFD 206 (260)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHH
Confidence 5677764 34555555555 588 8888877766653
No 305
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=45.97 E-value=42 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=11.7
Q ss_pred HHHHHcCcHHHHHHHHHHHHh
Q 024712 106 ILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.-.-..|++++|+.+|..+++
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333455666666666665554
No 306
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.27 E-value=1.2e+02 Score=24.40 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=53.3
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcC-------C--------CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cC
Q 024712 106 ILLEAKGLWAEAEKAYSSLLEDN-------P--------LD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FM 163 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~-------p--------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p 163 (263)
.+.....+.++|++.++++...- + .. ..+...++..+...|+.++|...++++-.. ++
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34455667778888777663321 0 01 235566777888888888888888777543 11
Q ss_pred C---CHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 164 A---DHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 164 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
. ....+...+..+...+++..+....-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 123344456666677777776666555553
No 307
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=45.10 E-value=1.3e+02 Score=24.69 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=28.0
Q ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 151 AIEWLNKYLET-----FMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 151 A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
++..|++++.. .......+..+|-.+++.++|.+|+..+-.+-
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 45566666542 22234456677888888888888888887764
No 308
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=43.81 E-value=1.3e+02 Score=24.60 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 66 LYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 66 ~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
.-.++...+++.| .|.-|+..+-.+-+..|.. +... .-|.+|+..-++.. ...+...+..+|-
T Consensus 259 LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~----------~L~~~AI~sa~~~Y--~n~HvYPYtYlgG 326 (550)
T 3u84_A 259 LQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPL----------TLYHKGIASAKTYY--RDEHIYPYMYLAG 326 (550)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHH----------HHHHHHHHHHHHHS--TTCCSHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHH----------HHHHHHHHHHHHHh--ccCCccceeecch
Confidence 3345666667765 5667887777777777632 1110 01223333333333 2345667788888
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~ 160 (263)
.+++.+++.+|+..+-.+-.
T Consensus 327 y~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 327 YHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHHH
Confidence 99999999999998887654
No 309
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.50 E-value=1.2e+02 Score=23.92 Aligned_cols=122 Identities=19% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHH-------H--------H-HhcCCCHHHHHHHH-HHHHhcccHHHHHHHHHH
Q 024712 129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNK-------Y--------L-ETFMADHDAWRELA-EIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~--------l-~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~ 191 (263)
-.++..+..+|..+.+.+++.+|..+|-- . . +..|...+.+...+ ..|...++...|..++..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35677788888888888877777666521 0 0 11234445544444 335667888888776554
Q ss_pred HHh----hCC------------------CCHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 192 LIL----SQP------------------TVPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 192 al~----~~p------------------~~~~~-~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
.++ .+| ..|.. +..+...-...+..+.+..-.+.|...++.+|+.....+-.+...+
T Consensus 213 f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~Y 292 (336)
T 3lpz_A 213 FTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMY 292 (336)
T ss_dssp HHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHH
T ss_pred HHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 442 222 23321 2233334444554333556666777777766621344444444444
Q ss_pred hh
Q 024712 249 FV 250 (263)
Q Consensus 249 ~~ 250 (263)
+.
T Consensus 293 Fg 294 (336)
T 3lpz_A 293 FG 294 (336)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 310
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.92 E-value=62 Score=20.53 Aligned_cols=83 Identities=16% Similarity=0.034 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
+..++..-.-....++|..+-+-+ ...++..-+.......+...|+|++|..+.+..- .|+.--.++.+-.+.|
T Consensus 10 LAE~AL~gTG~H~HqEA~tIAdwL-~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlG 83 (116)
T 2p58_C 10 LAEIALIGTGNHYHEEANCIAEWL-HLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLG 83 (116)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHccchHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcc
Confidence 334444444455666666555433 3334444445555666777777777766554432 2333333455556666
Q ss_pred ChhHHHHHH
Q 024712 147 NFPTAIEWL 155 (263)
Q Consensus 147 ~~~~A~~~~ 155 (263)
--+++...+
T Consensus 84 l~s~le~rL 92 (116)
T 2p58_C 84 LGSALESRL 92 (116)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 666655554
No 311
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=41.42 E-value=80 Score=25.92 Aligned_cols=30 Identities=10% Similarity=-0.097 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
...+..++|++|...|+|++|+...++++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 445778899999999999999999999885
No 312
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.18 E-value=18 Score=23.44 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=8.3
Q ss_pred ccHHHHHHHHHHHH
Q 024712 180 QMYKQAAFCYEELI 193 (263)
Q Consensus 180 g~~~~A~~~~~~al 193 (263)
|+-+.|+.+|++.+
T Consensus 36 g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 36 GQKEEAKNYYKQGI 49 (116)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666665554
No 313
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.42 E-value=54 Score=19.63 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=9.3
Q ss_pred hcccHHHHHHHHHHHHh
Q 024712 178 SLQMYKQAAFCYEELIL 194 (263)
Q Consensus 178 ~~g~~~~A~~~~~~al~ 194 (263)
..|+|++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44556666555555543
No 314
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.32 E-value=85 Score=25.77 Aligned_cols=30 Identities=27% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..++..+|.+|+..|+|++|+...++++..
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 456778899999999999999999988853
No 315
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.35 E-value=75 Score=20.14 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=46.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
.++..-.-....++|..+-+-+ ...++..-+.......+...|+|++|..+.+..- .|+.--.++.+-.+.|--
T Consensus 11 E~AL~gTG~H~HqEA~tIAdwL-~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~ 84 (115)
T 2uwj_G 11 ELALAGSGQHCHEEALCIAEWL-ERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLG 84 (115)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCH
T ss_pred HHHHHHccchHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccH
Confidence 3444444455667776655433 3344444455556667777788887765443322 333334455666777777
Q ss_pred hHHHHHHH
Q 024712 149 PTAIEWLN 156 (263)
Q Consensus 149 ~~A~~~~~ 156 (263)
+++...+.
T Consensus 85 s~le~rL~ 92 (115)
T 2uwj_G 85 AALDRRLA 92 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 316
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=37.81 E-value=51 Score=20.29 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=8.8
Q ss_pred HHcCcHHHHHHHHHHHHh
Q 024712 109 EAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~ 126 (263)
-..|+|++|+.+|..+++
T Consensus 26 D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 344555555555554443
No 317
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=37.62 E-value=92 Score=25.62 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..++..+|.+|+..|+|++|+...++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 456778899999999999999999998863
No 318
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=37.35 E-value=92 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...+..++|++|...|+|++|+...++++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3457788999999999999999999998863
No 319
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=36.93 E-value=1.1e+02 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
..++.++|++|+..++|++|+...++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457788999999999999999999999864
No 320
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=36.43 E-value=91 Score=20.55 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVL---QKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~---~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
+......++..++.+..+..++.+ ++..|... ...+....--.+..+|.+++++...
T Consensus 43 LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 43 LEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455666788888888877666 44445432 2333333333456677777777654
No 321
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=35.96 E-value=1.2e+02 Score=25.21 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
..++..+|.+|+..|+|++|+...++++...
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4567788999999999999999999998753
No 322
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=34.01 E-value=1.1e+02 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..++..+|.+|+..|+|++|+...++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 456778899999999999999999998864
No 323
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=33.49 E-value=98 Score=25.56 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...++.++|++|+..|+|++|+...++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3457788999999999999999999999864
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.43 E-value=1.4e+02 Score=21.89 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 117 AEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 117 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
+..+|.-+.... -.....|...|..+...|++.+|..+|+..++..
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334444444332 2233445555555555555555555555555543
No 325
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=32.78 E-value=88 Score=19.28 Aligned_cols=55 Identities=4% Similarity=-0.093 Sum_probs=40.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.+..++..|+|-+|=++++.+....|+... +....|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 466778889999999999999998864321 222334455567887 8888888876
No 326
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.86 E-value=3.6e+02 Score=26.02 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE 109 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~ 109 (263)
+..+-...+..-+.+++.++|+.+++.+|++..++..+-..+.
T Consensus 1110 ~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1110 FRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 3333333444446678899999999999998877766555444
No 327
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.16 E-value=1.1e+02 Score=19.71 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=5.4
Q ss_pred hHHHHHHHHHH
Q 024712 149 PTAIEWLNKYL 159 (263)
Q Consensus 149 ~~A~~~~~~~l 159 (263)
..|+.++.+++
T Consensus 16 ~kAi~lv~~Av 26 (117)
T 2cpt_A 16 QKAIDLASKAA 26 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 328
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.64 E-value=2e+02 Score=22.49 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=19.3
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
...++.++|..|....++.+++.|..
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 34567788888888888888887753
No 329
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=28.94 E-value=34 Score=20.97 Aligned_cols=17 Identities=18% Similarity=-0.099 Sum_probs=10.2
Q ss_pred ccHHHHHHHHHHHHhhC
Q 024712 180 QMYKQAAFCYEELILSQ 196 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~ 196 (263)
..+++|..+..++|..+
T Consensus 11 ~~h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 11 VFHKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34566666666666543
No 330
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.55 E-value=80 Score=17.46 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=3.9
Q ss_pred HHHHHHHHcCcHHHH
Q 024712 103 LEGILLEAKGLWAEA 117 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A 117 (263)
.....+...|+|++|
T Consensus 45 Ir~~SLmNrG~Yq~A 59 (61)
T 3ph0_C 45 IRLSSLMNQGDYQRA 59 (61)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHccchHhHh
Confidence 334444444554444
No 331
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=27.45 E-value=0.038 Score=45.93 Aligned_cols=130 Identities=13% Similarity=-0.015 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 147 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 147 (263)
...|.-++..|.|+.|.-+|..+ ++ +..++.++...|+|..|++.-+++ +++.+|......+...+.
T Consensus 148 q~VGDrcf~e~lYeAAKilys~i----sN----~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCT
T ss_pred HHHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchH
Confidence 44677778888888777666432 11 122455666666666666544332 344556666666666666
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
+.-|-.+--..+ ..|+. +-.+...|...|.+++-+.+++.++.+..-....+..||.+|.+-.
T Consensus 215 frLAqicGLniI-vhade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 215 FRLAQMCGLHIV-VHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 277 (624)
T ss_dssp TTTTTHHHHHHH-CCSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHhcchhc-ccHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC
Confidence 665544443333 23332 2234455666777777777777777766666777777776665543
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.13 E-value=2.9e+02 Score=23.08 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|..-..|.+.-..++..|+|++|.++.-..-.-.=.++......-.+-..-|+..--+.+|..+++...-+..--..++.
T Consensus 358 pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r 437 (494)
T 1bpo_A 358 AGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCR 437 (494)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhH
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
.-..+|+ ...+++++..+.-... ..||++. +..+..-|...|.++
T Consensus 438 ~vL~q~r----~~llekWl~e~KL~~S--EeLGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 438 PVLQQGR----KQLLEKWLKEDKLECS--EELGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHTTC----HHHHHHHHHHTCSCCC--HHHHHHH-HHHCSHHHHHHHHHH
T ss_pred HHHhccH----HHHHHHHHhcCCcccc--HHhHhhh-hhcCHHHHHHHHHHc
No 333
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.93 E-value=2.4e+02 Score=22.09 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC----Cc----HHHH--HHHHHHHHHc------------CcHHHHHHHH--HH
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFP----ES----KRVG--RLEGILLEAK------------GLWAEAEKAY--SS 123 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~----~~~~--~~~a~~~~~~------------~~~~~A~~~~--~~ 123 (263)
.+.|..++..|++.+|+..|+.++..-| ++ .++. ...+.-|... .+....+++. =.
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence 4567888899999999999999988654 11 1111 1111111110 1111111111 01
Q ss_pred HHhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 024712 124 LLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (263)
Q Consensus 124 ~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (263)
...+.|.+. -++..-....++.++|..|....++.+++.|..
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 111122222 233344456678899999999999999999863
No 334
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=31.58 E-value=15 Score=32.20 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
....|.-.+..|+|.-|.++...++..+|++..+...++.+|.++|-
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 34456667888999999999999999999999999999999999986
No 335
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.61 E-value=2e+02 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
..+..++|.+|+..|+|++|+...++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 457788999999999999999999999864
No 336
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=24.74 E-value=2.1e+02 Score=23.91 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..++..+|.+|+..+++++|+...++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778899999999999999999999864
No 337
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=24.39 E-value=2.2e+02 Score=23.82 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...+..++|.+++..++|++|+...++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999999864
No 338
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=24.03 E-value=1.5e+02 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
...+..++|.+|+..++|++|+...++++.
T Consensus 179 k~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 179 QGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345778899999999999999999999885
No 339
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=28.77 E-value=18 Score=31.71 Aligned_cols=47 Identities=23% Similarity=0.066 Sum_probs=38.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (263)
.|...+..|++.-|.++++.++..+|++..+...++.+|.+.|.-.+
T Consensus 467 ~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 467 QMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 56666778999999999999999999998888888888888775443
No 340
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.34 E-value=3e+02 Score=22.00 Aligned_cols=89 Identities=15% Similarity=0.025 Sum_probs=59.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhC-------C----------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCC
Q 024712 73 AAMDCQCLDVAKDCIKVLQKQF-------P----------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL 130 (263)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~-------p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~ 130 (263)
+.....+.++|+..++.+.... + ....+....+..|...|+.++|...++++-.. +++
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4455678999999998764422 0 11234556788899999999999999888642 122
Q ss_pred C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 131 D---PVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 131 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
. ...+...+..+...+++..+....-..+..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 1 234555677777888888777666666653
No 341
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.29 E-value=1.9e+02 Score=19.70 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 024712 83 AKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (263)
Q Consensus 83 A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 130 (263)
+..+|..+....- ..+..+...|..+...|++.+|.++|+..++....
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6666766666543 45556666777777777777777777777775433
No 342
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=22.25 E-value=1.6e+02 Score=22.29 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=8.7
Q ss_pred cCChhHHHHHHHHHHH
Q 024712 145 QGNFPTAIEWLNKYLE 160 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~ 160 (263)
.+++++|+...++++.
T Consensus 210 ln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 210 LGNPEGAMKFANRAIQ 225 (268)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4555555555555544
No 343
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.09 E-value=1.5e+02 Score=18.80 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=21.9
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.+++....-|.-..+.|+|++|.+.++++-+
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555566666677778888888887777654
No 344
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=22.05 E-value=2.5e+02 Score=20.97 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=7.2
Q ss_pred cCChhHHHHHHHHHH
Q 024712 145 QGNFPTAIEWLNKYL 159 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l 159 (263)
.++.++|+...++++
T Consensus 187 ln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 187 QNAPEQACHLAKTAF 201 (248)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555444443
No 345
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=21.98 E-value=1.8e+02 Score=19.17 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=7.9
Q ss_pred HHHHcCChhHHHHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKY 158 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~ 158 (263)
+++..++.+..+..++..
T Consensus 49 lyf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHHH
Confidence 334444444444444333
No 346
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=21.77 E-value=2e+02 Score=19.65 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=77.1
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH-----------HHHHHHH---------cCChhHHHHHHHHHHHhcCC
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-----------RVAIAKA---------QGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-----------l~~~~~~---------~g~~~~A~~~~~~~l~~~p~ 164 (263)
|.-....|..++..+...+.....+-...-|.- +..++-. -|+....+.++-+. +-.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~ 90 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTL 90 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCC
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cch
Confidence 445566799999999999988765543322211 1111111 23444444444322 122
Q ss_pred CHHHHHHHH-HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 165 DHDAWRELA-EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 165 ~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
.+ +..+| .....+|+-++--+.+...+.-.+-++.....+|.+|.+.|+ ..+|.+.+.+|-+.
T Consensus 91 -se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~---~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 91 -NE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD---ERDATTLLIEACKK 154 (172)
T ss_dssp -CH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHT
T ss_pred -HH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc---hhhHHHHHHHHHHh
Confidence 22 23344 445677888888888888767777779999999999999999 99999999988765
No 347
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.77 E-value=1.5e+02 Score=18.66 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.+++....-|.-..+.|+|++|.+.++++-+
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455555666667777888888777777654
No 348
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.32 E-value=3.6e+02 Score=23.56 Aligned_cols=93 Identities=11% Similarity=-0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHhcCCCC--
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-----------LWAEAEKAYSSLLEDNPLD-- 131 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~p~~-- 131 (263)
.+....|..+-..|.+++|+.+|.-+-+.+.--.-+...++.+..... ..+.-+...+++.+.-..+
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~ 523 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAG 523 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCch
Q ss_pred ------------HHHHHHHHHHH--HHcCChhHHHHHHHH
Q 024712 132 ------------PVLHKRRVAIA--KAQGNFPTAIEWLNK 157 (263)
Q Consensus 132 ------------~~~~~~l~~~~--~~~g~~~~A~~~~~~ 157 (263)
...+..+..+. +..|+++.|+..+++
T Consensus 524 ~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 524 ISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 349
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.13 E-value=1.1e+02 Score=25.14 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
....+..++|++|+.+++|++|+...++++..
T Consensus 189 tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 189 NTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34567889999999999999999999999864
No 350
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=20.17 E-value=1.8e+02 Score=18.50 Aligned_cols=46 Identities=17% Similarity=-0.022 Sum_probs=23.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~ 226 (263)
...+..+|+|++|....+.. + .|+.--.++-|-.+.|- ..++...+
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl---~s~le~rL 92 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKL----A-YPDLEPWLALCEYRLGL---GSALESRL 92 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTS----C-CGGGHHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhccc---HHHHHHHH
Confidence 34455666666665544321 1 33444445555566666 55555555
Done!