Query 024713
Match_columns 263
No_of_seqs 275 out of 2164
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559 Gamma-glutamyl hydrola 100.0 1.2E-56 2.5E-61 389.8 15.5 254 1-262 1-254 (340)
2 cd01747 GATase1_Glutamyl_Hydro 100.0 5E-37 1.1E-41 277.7 16.4 196 63-262 1-198 (273)
3 PF07722 Peptidase_C26: Peptid 100.0 1.3E-30 2.7E-35 228.7 9.6 180 61-261 1-202 (217)
4 COG2071 Predicted glutamine am 99.9 1.1E-25 2.4E-30 197.1 13.7 169 58-252 1-196 (243)
5 PRK11366 puuD gamma-glutamyl-g 99.9 1E-22 2.3E-27 182.6 14.1 166 58-252 5-202 (254)
6 COG0118 HisH Glutamine amidotr 99.8 9.5E-21 2.1E-25 162.2 12.5 145 87-262 14-173 (204)
7 PRK08007 para-aminobenzoate sy 99.8 2.6E-19 5.5E-24 153.7 13.5 142 81-252 7-149 (187)
8 TIGR00888 guaA_Nterm GMP synth 99.8 2.3E-19 5E-24 153.6 12.8 138 83-252 8-145 (188)
9 COG0512 PabA Anthranilate/para 99.8 4.5E-19 9.9E-24 151.0 14.4 143 80-252 8-151 (191)
10 PRK06895 putative anthranilate 99.8 4.6E-19 9.9E-24 152.3 14.2 140 81-250 9-148 (190)
11 PRK05637 anthranilate synthase 99.8 9.9E-19 2.1E-23 152.6 16.1 151 81-252 9-163 (208)
12 PRK06774 para-aminobenzoate sy 99.8 5.9E-19 1.3E-23 151.6 14.4 142 81-252 7-149 (191)
13 cd01745 GATase1_2 Subgroup of 99.8 2.8E-19 6.1E-24 153.6 11.7 105 63-176 1-121 (189)
14 TIGR00566 trpG_papA glutamine 99.8 1.4E-18 2.9E-23 149.3 15.5 142 81-252 7-149 (188)
15 PRK07765 para-aminobenzoate sy 99.8 1.2E-18 2.7E-23 152.5 14.6 143 83-252 10-153 (214)
16 PRK05670 anthranilate synthase 99.8 1.2E-18 2.6E-23 149.5 13.5 141 81-251 7-148 (189)
17 PRK08857 para-aminobenzoate sy 99.8 2.9E-18 6.4E-23 147.6 15.2 141 81-251 7-148 (193)
18 cd01742 GATase1_GMP_Synthase T 99.8 6.8E-19 1.5E-23 149.3 11.0 138 83-252 8-145 (181)
19 PF00117 GATase: Glutamine ami 99.8 1.6E-18 3.4E-23 148.1 12.3 148 81-252 5-152 (192)
20 cd01744 GATase1_CPSase Small c 99.8 6.1E-18 1.3E-22 143.8 15.7 130 89-252 11-140 (178)
21 cd01743 GATase1_Anthranilate_S 99.8 6.8E-18 1.5E-22 143.9 14.9 142 82-252 7-148 (184)
22 PRK07649 para-aminobenzoate/an 99.8 4.2E-18 9E-23 147.2 12.9 141 81-251 7-148 (195)
23 PLN02335 anthranilate synthase 99.8 5.1E-18 1.1E-22 149.5 13.4 145 81-252 26-173 (222)
24 PRK12564 carbamoyl phosphate s 99.8 1.5E-17 3.2E-22 155.9 15.3 132 87-252 188-319 (360)
25 CHL00101 trpG anthranilate syn 99.8 8.5E-18 1.8E-22 144.5 12.6 142 81-252 7-149 (190)
26 PRK00758 GMP synthase subunit 99.8 6.9E-18 1.5E-22 144.0 11.1 133 83-252 9-142 (184)
27 PLN02347 GMP synthetase 99.7 2.4E-17 5.3E-22 161.5 15.5 144 81-252 18-163 (536)
28 TIGR01368 CPSaseIIsmall carbam 99.7 2.9E-17 6.2E-22 153.8 15.3 131 88-252 185-315 (358)
29 PRK09065 glutamine amidotransf 99.7 3.5E-17 7.6E-22 145.4 12.4 137 91-252 28-167 (237)
30 cd01741 GATase1_1 Subgroup of 99.7 5.8E-17 1.3E-21 138.3 13.1 141 87-252 13-160 (188)
31 COG0518 GuaA GMP synthase - Gl 99.7 6.2E-17 1.3E-21 140.2 12.1 136 90-252 17-156 (198)
32 PRK13170 hisH imidazole glycer 99.7 1.2E-16 2.6E-21 138.1 12.1 138 88-262 14-167 (196)
33 PRK00074 guaA GMP synthase; Re 99.7 7.5E-17 1.6E-21 157.7 11.9 138 83-252 13-150 (511)
34 PRK13566 anthranilate synthase 99.7 1.9E-16 4.1E-21 159.8 14.5 140 84-252 537-676 (720)
35 PRK07567 glutamine amidotransf 99.7 1.6E-16 3.4E-21 141.7 12.4 140 88-252 18-171 (242)
36 COG0505 CarA Carbamoylphosphat 99.7 1.5E-16 3.3E-21 146.2 12.4 135 86-254 189-323 (368)
37 PLN02771 carbamoyl-phosphate s 99.7 3.4E-16 7.4E-21 148.3 13.6 131 87-252 251-381 (415)
38 TIGR01815 TrpE-clade3 anthrani 99.7 1.1E-15 2.3E-20 154.3 15.5 153 58-252 514-666 (717)
39 cd01746 GATase1_CTP_Synthase T 99.7 5.4E-16 1.2E-20 137.7 11.3 168 61-252 1-196 (235)
40 CHL00188 hisH imidazole glycer 99.6 1.3E-15 2.9E-20 133.1 12.1 125 88-232 15-160 (210)
41 CHL00197 carA carbamoyl-phosph 99.6 1.8E-15 3.9E-20 142.6 13.2 130 88-252 204-333 (382)
42 PRK14607 bifunctional glutamin 99.6 1.2E-15 2.6E-20 150.0 12.5 142 81-252 7-150 (534)
43 PRK13152 hisH imidazole glycer 99.6 3.5E-15 7.6E-20 129.3 13.2 138 88-261 13-171 (201)
44 PRK13525 glutamine amidotransf 99.6 2.2E-15 4.7E-20 129.6 11.2 148 60-250 1-152 (189)
45 PRK12838 carbamoyl phosphate s 99.6 5.2E-15 1.1E-19 138.4 14.4 131 87-252 178-309 (354)
46 PRK13146 hisH imidazole glycer 99.6 3.6E-15 7.8E-20 130.1 12.3 141 88-261 15-177 (209)
47 PRK07053 glutamine amidotransf 99.6 4.9E-15 1.1E-19 131.5 13.2 137 89-252 18-159 (234)
48 PRK06490 glutamine amidotransf 99.6 1.5E-14 3.2E-19 128.8 16.1 134 89-252 23-160 (239)
49 PRK05665 amidotransferase; Pro 99.6 5.2E-15 1.1E-19 131.8 12.4 134 90-251 28-166 (240)
50 PRK08250 glutamine amidotransf 99.6 9.8E-15 2.1E-19 129.6 13.1 136 90-251 17-160 (235)
51 PLN02889 oxo-acid-lyase/anthra 99.6 1.2E-14 2.6E-19 148.9 14.6 149 80-253 88-244 (918)
52 PRK13181 hisH imidazole glycer 99.6 1.3E-14 2.8E-19 125.4 12.5 140 88-262 13-170 (199)
53 PRK13142 hisH imidazole glycer 99.6 7.7E-15 1.7E-19 126.5 10.6 141 88-262 13-158 (192)
54 cd01748 GATase1_IGP_Synthase T 99.6 1.8E-14 3.8E-19 124.3 11.8 143 83-261 8-170 (198)
55 PRK14004 hisH imidazole glycer 99.6 3.7E-14 8E-19 124.0 13.9 143 88-262 13-180 (210)
56 PRK13527 glutamine amidotransf 99.6 5.2E-14 1.1E-18 121.8 14.0 153 62-252 2-164 (200)
57 PRK09522 bifunctional glutamin 99.5 2.6E-14 5.7E-19 140.2 10.9 141 80-250 8-150 (531)
58 PRK13141 hisH imidazole glycer 99.5 7.3E-14 1.6E-18 121.2 10.9 142 83-261 9-171 (205)
59 PRK13143 hisH imidazole glycer 99.5 4E-13 8.6E-18 116.4 12.9 138 88-261 14-167 (200)
60 PRK06186 hypothetical protein; 99.5 2.1E-13 4.6E-18 120.3 11.2 160 62-252 3-185 (229)
61 TIGR00337 PyrG CTP synthase. C 99.5 1.9E-13 4.2E-18 132.7 11.4 172 59-252 288-484 (525)
62 TIGR01855 IMP_synth_hisH imida 99.5 4.8E-13 1E-17 115.5 11.1 140 89-261 13-166 (196)
63 PLN02832 glutamine amidotransf 99.5 7.8E-13 1.7E-17 118.1 12.7 83 61-172 2-89 (248)
64 TIGR01823 PabB-fungal aminodeo 99.4 1.5E-12 3.2E-17 132.4 15.3 133 81-232 13-148 (742)
65 TIGR01737 FGAM_synth_I phospho 99.4 4E-12 8.6E-17 112.3 14.0 161 62-255 2-171 (227)
66 cd01749 GATase1_PB Glutamine A 99.4 8.1E-13 1.7E-17 113.0 9.2 86 63-175 1-89 (183)
67 PRK05380 pyrG CTP synthetase; 99.4 6.8E-12 1.5E-16 122.1 13.1 100 59-176 287-393 (533)
68 PLN02617 imidazole glycerol ph 99.4 9.8E-12 2.1E-16 122.1 13.9 73 88-172 20-96 (538)
69 TIGR03800 PLP_synth_Pdx2 pyrid 99.3 1.7E-11 3.7E-16 105.1 11.8 84 63-173 2-88 (184)
70 KOG0370 Multifunctional pyrimi 99.3 3.2E-11 6.8E-16 121.6 11.7 131 87-254 183-313 (1435)
71 KOG0026 Anthranilate synthase, 99.2 8.5E-11 1.9E-15 98.0 11.7 157 58-257 17-177 (223)
72 PLN02327 CTP synthase 99.2 1E-10 2.3E-15 114.2 13.5 171 60-252 297-504 (557)
73 KOG1224 Para-aminobenzoate (PA 99.2 9.4E-11 2E-15 112.5 12.7 157 80-261 21-184 (767)
74 KOG1622 GMP synthase [Nucleoti 99.2 8.3E-12 1.8E-16 117.6 5.5 133 90-251 32-164 (552)
75 KOG0623 Glutamine amidotransfe 99.2 4.6E-11 9.9E-16 109.6 8.6 148 88-262 15-178 (541)
76 PRK01175 phosphoribosylformylg 99.2 1.6E-10 3.5E-15 104.2 10.0 94 59-171 2-105 (261)
77 cd01740 GATase1_FGAR_AT Type 1 99.2 2.6E-10 5.6E-15 101.5 10.7 94 63-175 1-104 (238)
78 KOG3179 Predicted glutamine sy 99.1 2.4E-10 5.1E-15 98.2 8.3 143 90-254 30-175 (245)
79 COG0047 PurL Phosphoribosylfor 99.1 1.9E-09 4.1E-14 94.3 13.1 89 59-171 1-97 (231)
80 PRK05368 homoserine O-succinyl 99.0 1.3E-09 2.9E-14 100.0 10.1 117 118-257 98-220 (302)
81 PRK13526 glutamine amidotransf 99.0 1.8E-09 3.9E-14 92.1 9.4 82 61-171 3-88 (179)
82 PRK03619 phosphoribosylformylg 99.0 6.7E-09 1.5E-13 91.4 12.2 90 62-175 2-101 (219)
83 COG0504 PyrG CTP synthase (UTP 98.8 3.8E-08 8.3E-13 94.4 11.5 170 61-252 289-484 (533)
84 cd01750 GATase1_CobQ Type 1 gl 98.8 1.5E-08 3.3E-13 87.3 7.5 73 88-172 13-89 (194)
85 cd03130 GATase1_CobB Type 1 gl 98.7 3E-08 6.5E-13 85.8 8.1 80 83-172 9-92 (198)
86 KOG2387 CTP synthase (UTP-ammo 98.7 1.1E-07 2.3E-12 90.2 11.0 175 58-252 296-505 (585)
87 PF13507 GATase_5: CobB/CobQ-l 98.6 3.8E-08 8.2E-13 88.7 5.0 93 60-171 1-106 (259)
88 COG0311 PDX2 Predicted glutami 98.6 1.4E-07 3E-12 80.3 7.8 83 61-172 1-89 (194)
89 PRK06278 cobyrinic acid a,c-di 98.6 1.6E-07 3.5E-12 91.3 7.8 72 89-172 10-82 (476)
90 TIGR01857 FGAM-synthase phosph 98.4 9.4E-07 2E-11 93.9 9.7 96 58-171 975-1090(1239)
91 TIGR01735 FGAM_synt phosphorib 98.4 7.5E-06 1.6E-10 88.1 15.5 93 58-169 1053-1158(1310)
92 cd03131 GATase1_HTS Type 1 glu 98.4 4.6E-07 9.9E-12 77.2 5.1 100 117-234 60-164 (175)
93 cd03146 GAT1_Peptidase_E Type 98.3 4E-06 8.7E-11 73.3 9.9 96 58-171 29-130 (212)
94 cd01653 GATase1 Type 1 glutami 98.3 3.9E-06 8.4E-11 62.1 8.2 76 88-168 15-92 (115)
95 PF01174 SNO: SNO glutamine am 98.3 1.4E-06 3E-11 74.6 6.0 70 89-172 10-85 (188)
96 PRK01077 cobyrinic acid a,c-di 98.3 3.7E-06 8E-11 81.5 9.2 92 59-172 244-339 (451)
97 PLN03206 phosphoribosylformylg 98.2 7.2E-06 1.6E-10 87.9 9.2 95 58-171 1035-1142(1307)
98 PRK00784 cobyric acid synthase 98.1 6.7E-06 1.4E-10 80.5 7.4 70 91-172 268-342 (488)
99 PHA03366 FGAM-synthase; Provis 98.1 7.1E-05 1.5E-09 80.8 15.4 94 58-171 1026-1133(1304)
100 TIGR00379 cobB cobyrinic acid 98.1 1.3E-05 2.8E-10 77.7 8.6 92 59-172 243-338 (449)
101 PRK05297 phosphoribosylformylg 98.1 1.2E-05 2.5E-10 86.7 8.8 94 59-171 1034-1140(1290)
102 cd03128 GAT_1 Type 1 glutamine 98.0 1.6E-05 3.6E-10 56.1 6.5 75 89-168 16-92 (92)
103 KOG3210 Imidazoleglycerol-phos 97.9 4.8E-05 1E-09 64.1 7.1 90 60-174 11-110 (226)
104 PRK13896 cobyrinic acid a,c-di 97.7 8E-05 1.7E-09 71.9 7.4 89 61-172 234-325 (433)
105 TIGR01739 tegu_FGAM_synt herpe 97.7 0.00013 2.7E-09 78.4 9.5 94 58-171 927-1034(1202)
106 PF07685 GATase_3: CobB/CobQ-l 97.7 7.4E-05 1.6E-09 62.3 5.4 53 116-173 4-60 (158)
107 cd03133 GATase1_ES1 Type 1 glu 97.6 0.00029 6.3E-09 61.9 7.9 52 117-173 80-143 (213)
108 PF04204 HTS: Homoserine O-suc 97.6 0.00015 3.2E-09 66.6 6.1 117 118-259 97-221 (298)
109 PRK11780 isoprenoid biosynthes 97.5 0.00049 1.1E-08 60.6 8.5 51 117-172 83-145 (217)
110 cd03144 GATase1_ScBLP_like Typ 97.5 0.00012 2.7E-09 58.1 4.1 44 119-168 44-90 (114)
111 PRK05282 (alpha)-aspartyl dipe 97.5 0.001 2.2E-08 59.2 10.4 98 59-172 30-130 (233)
112 cd03169 GATase1_PfpI_1 Type 1 97.5 0.00073 1.6E-08 57.0 8.9 48 119-171 76-124 (180)
113 TIGR00313 cobQ cobyric acid sy 97.4 0.00024 5.2E-09 69.4 6.4 51 117-172 282-336 (475)
114 TIGR01382 PfpI intracellular p 97.4 0.001 2.2E-08 55.1 8.7 78 89-171 17-108 (166)
115 PRK04155 chaperone protein Hch 97.4 0.0027 5.8E-08 58.3 11.8 50 117-171 145-196 (287)
116 cd03147 GATase1_Ydr533c_like T 97.2 0.00084 1.8E-08 59.6 6.8 50 117-171 92-143 (231)
117 cd03134 GATase1_PfpI_like A ty 97.2 0.0026 5.7E-08 52.6 9.3 77 90-171 18-110 (165)
118 TIGR01001 metA homoserine O-su 97.1 0.001 2.3E-08 60.9 6.2 115 118-258 98-220 (300)
119 cd03148 GATase1_EcHsp31_like T 97.1 0.0019 4.1E-08 57.4 7.4 49 118-171 95-145 (232)
120 COG0693 ThiJ Putative intracel 97.0 0.0051 1.1E-07 52.1 8.8 95 61-171 3-115 (188)
121 cd03129 GAT1_Peptidase_E_like 96.9 0.0061 1.3E-07 52.9 9.3 95 59-171 28-130 (210)
122 cd03132 GATase1_catalase Type 96.9 0.0064 1.4E-07 49.1 8.8 94 62-171 3-111 (142)
123 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.7 0.0013 2.8E-08 53.8 3.1 50 117-171 35-87 (147)
124 PRK11574 oxidative-stress-resi 96.5 0.028 6.1E-07 47.9 10.2 96 59-170 1-114 (196)
125 cd03137 GATase1_AraC_1 AraC tr 96.5 0.012 2.5E-07 49.6 7.4 50 117-171 62-112 (187)
126 cd03140 GATase1_PfpI_3 Type 1 96.4 0.0081 1.7E-07 50.2 6.0 49 118-171 59-107 (170)
127 cd03135 GATase1_DJ-1 Type 1 gl 96.4 0.022 4.9E-07 46.5 8.6 78 89-171 16-109 (163)
128 COG3442 Predicted glutamine am 96.2 0.0048 1.1E-07 54.2 3.8 72 92-171 28-103 (250)
129 cd03139 GATase1_PfpI_2 Type 1 96.0 0.02 4.2E-07 48.0 6.5 50 117-171 60-110 (183)
130 PF03575 Peptidase_S51: Peptid 95.7 0.039 8.5E-07 45.5 7.0 72 89-167 4-81 (154)
131 PRK11249 katE hydroperoxidase 95.7 0.062 1.3E-06 55.3 9.6 97 59-171 596-707 (752)
132 COG1492 CobQ Cobyric acid synt 95.6 0.026 5.7E-07 55.0 6.2 62 98-172 276-342 (486)
133 cd03141 GATase1_Hsp31_like Typ 95.5 0.015 3.3E-07 51.0 3.8 49 118-171 89-139 (221)
134 cd03138 GATase1_AraC_2 AraC tr 95.4 0.043 9.2E-07 46.6 6.2 50 117-171 67-120 (195)
135 COG1897 MetA Homoserine trans- 95.2 0.038 8.2E-07 49.7 5.4 114 118-255 98-218 (307)
136 TIGR02069 cyanophycinase cyano 95.1 0.17 3.8E-06 45.4 9.6 98 59-171 27-132 (250)
137 COG1797 CobB Cobyrinic acid a, 95.1 0.11 2.5E-06 50.0 8.7 87 61-172 246-340 (451)
138 cd03145 GAT1_cyanophycinase Ty 95.0 0.22 4.7E-06 43.6 9.6 96 59-171 28-133 (217)
139 TIGR01383 not_thiJ DJ-1 family 94.5 0.047 1E-06 45.6 4.1 50 117-171 61-112 (179)
140 cd03136 GATase1_AraC_ArgR_like 94.4 0.072 1.6E-06 44.8 5.0 50 117-171 62-111 (185)
141 KOG1907 Phosphoribosylformylgl 94.2 0.11 2.5E-06 53.9 6.6 96 58-171 1056-1163(1320)
142 PRK09393 ftrA transcriptional 93.9 0.13 2.9E-06 47.3 6.1 50 117-171 73-122 (322)
143 KOG2764 Putative transcription 93.3 0.32 7E-06 43.2 7.0 69 91-165 25-110 (247)
144 PF13278 DUF4066: Putative ami 93.1 0.11 2.4E-06 42.9 3.8 50 117-171 59-109 (166)
145 COG3340 PepE Peptidase E [Amin 92.6 0.77 1.7E-05 40.5 8.3 79 81-165 46-128 (224)
146 PRK03372 ppnK inorganic polyph 89.2 1.6 3.5E-05 40.5 7.6 83 62-165 7-106 (306)
147 PRK03378 ppnK inorganic polyph 88.6 1.7 3.8E-05 39.9 7.4 83 62-165 7-97 (292)
148 PRK04539 ppnK inorganic polyph 88.6 2.5 5.4E-05 39.0 8.3 83 62-165 7-102 (296)
149 PRK01911 ppnK inorganic polyph 88.4 1.7 3.8E-05 39.9 7.2 83 62-165 2-98 (292)
150 PRK02649 ppnK inorganic polyph 88.0 2 4.4E-05 39.8 7.4 83 62-165 3-102 (305)
151 COG4285 Uncharacterized conser 87.4 2.2 4.8E-05 37.7 6.8 45 118-175 48-97 (253)
152 PRK14077 pnk inorganic polypho 86.2 3.5 7.5E-05 37.9 7.8 82 62-165 12-98 (287)
153 PF09825 BPL_N: Biotin-protein 85.7 2.3 4.9E-05 40.5 6.5 47 117-170 47-97 (367)
154 PRK02155 ppnK NAD(+)/NADH kina 84.5 4.1 8.9E-05 37.4 7.5 83 62-165 7-97 (291)
155 PF03358 FMN_red: NADPH-depend 84.5 4.3 9.3E-05 32.7 6.9 94 62-164 3-115 (152)
156 COG0303 MoeA Molybdopterin bio 84.3 7.4 0.00016 37.5 9.4 76 56-131 172-254 (404)
157 COG0655 WrbA Multimeric flavod 82.7 5.6 0.00012 34.3 7.2 57 62-126 3-82 (207)
158 PRK01231 ppnK inorganic polyph 82.4 4.9 0.00011 37.0 7.1 83 62-165 6-96 (295)
159 PRK01215 competence damage-ind 81.4 6.8 0.00015 35.5 7.5 68 59-131 2-74 (264)
160 TIGR02667 moaB_proteo molybden 80.7 7.8 0.00017 32.4 7.2 66 59-131 3-75 (163)
161 cd06295 PBP1_CelR Ligand bindi 78.5 22 0.00048 30.8 9.8 63 84-159 26-91 (275)
162 COG4090 Uncharacterized protei 78.3 4.5 9.9E-05 33.0 4.7 39 117-162 83-123 (154)
163 TIGR00177 molyb_syn molybdenum 77.7 13 0.00028 30.2 7.5 43 89-131 31-78 (144)
164 PLN02935 Bifunctional NADH kin 77.2 8.1 0.00017 38.3 7.0 82 62-164 196-295 (508)
165 PRK03708 ppnK inorganic polyph 77.2 8.1 0.00018 35.2 6.7 82 62-165 2-90 (277)
166 PRK06852 aldolase; Validated 76.1 25 0.00054 32.7 9.6 68 59-131 167-241 (304)
167 PRK02231 ppnK inorganic polyph 76.0 8.8 0.00019 35.0 6.6 65 88-164 3-75 (272)
168 PF01513 NAD_kinase: ATP-NAD k 75.6 3.2 7E-05 37.7 3.7 82 62-165 1-110 (285)
169 PRK10569 NAD(P)H-dependent FMN 75.3 21 0.00046 30.5 8.5 92 62-164 3-108 (191)
170 PRK14690 molybdopterin biosynt 75.3 20 0.00044 34.7 9.2 78 54-131 187-271 (419)
171 cd06274 PBP1_FruR Ligand bindi 75.1 24 0.00053 30.3 9.0 47 83-129 14-65 (264)
172 PRK14076 pnk inorganic polypho 74.5 12 0.00026 37.6 7.6 86 59-165 288-382 (569)
173 PF02514 CobN-Mg_chel: CobN/Ma 74.5 10 0.00022 41.2 7.5 97 58-169 69-174 (1098)
174 PF07085 DRTGG: DRTGG domain; 73.9 12 0.00025 28.5 5.9 61 90-164 34-94 (105)
175 cd01542 PBP1_TreR_like Ligand- 73.3 25 0.00055 30.0 8.6 46 84-129 15-65 (259)
176 PRK14497 putative molybdopteri 73.2 16 0.00035 36.6 8.1 82 50-131 169-257 (546)
177 PF06283 ThuA: Trehalose utili 73.2 23 0.00051 30.4 8.4 106 89-211 23-137 (217)
178 COG4917 EutP Ethanolamine util 73.0 9.9 0.00021 31.1 5.4 40 56-105 87-126 (148)
179 cd06281 PBP1_LacI_like_5 Ligan 72.9 37 0.00079 29.4 9.6 46 84-129 15-65 (269)
180 PRK10680 molybdopterin biosynt 71.9 22 0.00048 34.3 8.6 77 56-132 173-256 (411)
181 cd00887 MoeA MoeA family. Memb 71.5 15 0.00032 35.1 7.2 79 54-132 162-247 (394)
182 cd00886 MogA_MoaB MogA_MoaB fa 71.4 24 0.00053 28.8 7.6 42 90-131 25-73 (152)
183 PLN02929 NADH kinase 71.1 9.6 0.00021 35.3 5.6 60 88-164 37-96 (301)
184 cd01575 PBP1_GntR Ligand-bindi 71.0 28 0.0006 29.8 8.3 44 86-129 17-65 (268)
185 cd06273 PBP1_GntR_like_1 This 70.7 33 0.00071 29.5 8.8 63 86-161 17-84 (268)
186 PRK10936 TMAO reductase system 70.5 52 0.0011 30.2 10.5 61 60-128 46-113 (343)
187 PF05368 NmrA: NmrA-like famil 70.2 25 0.00055 30.1 7.9 59 90-150 36-94 (233)
188 cd06305 PBP1_methylthioribose_ 69.7 37 0.00081 29.2 9.0 66 84-160 15-85 (273)
189 PF03698 UPF0180: Uncharacteri 69.3 8.4 0.00018 28.7 3.9 35 89-130 12-46 (80)
190 cd06299 PBP1_LacI_like_13 Liga 68.5 45 0.00097 28.5 9.2 45 85-129 16-65 (265)
191 PLN02727 NAD kinase 67.9 16 0.00035 38.9 7.0 82 62-165 680-777 (986)
192 PRK09417 mogA molybdenum cofac 67.5 25 0.00055 30.3 7.2 84 60-150 3-95 (193)
193 cd06283 PBP1_RegR_EndR_KdgR_li 67.2 40 0.00087 28.7 8.6 46 84-129 15-65 (267)
194 cd06318 PBP1_ABC_sugar_binding 66.9 40 0.00087 29.2 8.6 46 83-128 14-64 (282)
195 cd06292 PBP1_LacI_like_10 Liga 66.8 59 0.0013 28.0 9.7 46 83-128 14-64 (273)
196 cd00758 MoCF_BD MoCF_BD: molyb 66.3 22 0.00048 28.3 6.3 43 90-132 24-71 (133)
197 cd06298 PBP1_CcpA_like Ligand- 66.1 45 0.00096 28.5 8.7 47 83-129 14-65 (268)
198 PRK10355 xylF D-xylose transpo 65.9 60 0.0013 29.7 9.9 84 59-161 24-112 (330)
199 PRK02645 ppnK inorganic polyph 65.8 20 0.00044 33.1 6.7 81 62-163 5-89 (305)
200 PRK03094 hypothetical protein; 65.3 12 0.00026 27.9 4.0 35 89-130 12-46 (80)
201 smart00852 MoCF_biosynth Proba 65.2 14 0.0003 29.4 4.9 42 90-131 23-69 (135)
202 cd01545 PBP1_SalR Ligand-bindi 65.2 56 0.0012 28.0 9.1 66 83-160 14-85 (270)
203 COG4977 Transcriptional regula 64.3 17 0.00037 34.1 5.9 49 118-171 75-124 (328)
204 TIGR01196 edd 6-phosphoglucona 64.3 54 0.0012 33.3 9.6 43 58-104 62-104 (601)
205 cd06309 PBP1_YtfQ_like Peripla 64.2 44 0.00095 28.9 8.3 46 84-129 15-65 (273)
206 cd06267 PBP1_LacI_sugar_bindin 64.1 54 0.0012 27.6 8.7 66 83-161 14-84 (264)
207 cd06282 PBP1_GntR_like_2 Ligan 63.5 57 0.0012 27.8 8.8 64 86-161 17-85 (266)
208 PRK10653 D-ribose transporter 63.1 80 0.0017 27.9 9.9 62 59-128 25-91 (295)
209 PRK05569 flavodoxin; Provision 62.7 62 0.0013 25.5 8.3 78 81-162 13-92 (141)
210 PRK04885 ppnK inorganic polyph 62.5 25 0.00055 31.8 6.5 69 63-165 3-71 (265)
211 cd01538 PBP1_ABC_xylose_bindin 62.4 52 0.0011 29.0 8.5 67 84-161 15-86 (288)
212 cd06322 PBP1_ABC_sugar_binding 62.4 59 0.0013 27.9 8.7 45 84-128 15-64 (267)
213 cd00885 cinA Competence-damage 62.3 45 0.00097 28.0 7.6 41 91-131 25-70 (170)
214 cd06271 PBP1_AglR_RafR_like Li 62.2 75 0.0016 27.0 9.3 46 84-129 19-69 (268)
215 PRK09054 phosphogluconate dehy 62.1 49 0.0011 33.6 8.9 43 58-104 63-105 (603)
216 PRK06756 flavodoxin; Provision 61.7 82 0.0018 25.2 9.0 44 81-126 13-56 (148)
217 cd03522 MoeA_like MoeA_like. T 61.6 33 0.00072 31.9 7.3 72 57-133 156-233 (312)
218 PF13407 Peripla_BP_4: Peripla 61.6 67 0.0015 27.4 8.9 71 83-164 13-89 (257)
219 PRK01185 ppnK inorganic polyph 61.3 26 0.00056 31.9 6.4 75 63-164 3-82 (271)
220 cd01537 PBP1_Repressors_Sugar_ 61.1 70 0.0015 26.8 8.8 47 84-130 15-66 (264)
221 PRK14491 putative bifunctional 60.8 36 0.00078 34.5 7.9 79 54-132 361-446 (597)
222 TIGR01753 flav_short flavodoxi 60.7 66 0.0014 25.0 8.0 79 81-162 10-89 (140)
223 cd06279 PBP1_LacI_like_3 Ligan 60.3 66 0.0014 28.1 8.8 44 86-129 22-66 (283)
224 PRK14498 putative molybdopteri 60.0 32 0.00069 34.9 7.4 76 56-131 182-264 (633)
225 cd01540 PBP1_arabinose_binding 59.8 70 0.0015 27.8 8.9 67 84-162 15-86 (289)
226 PRK12493 magnesium chelatase s 59.7 29 0.00063 38.5 7.4 99 60-171 253-364 (1310)
227 PRK08227 autoinducer 2 aldolas 59.3 59 0.0013 29.5 8.3 86 59-164 140-226 (264)
228 COG2984 ABC-type uncharacteriz 59.0 94 0.002 29.1 9.6 83 60-160 159-244 (322)
229 cd06300 PBP1_ABC_sugar_binding 59.0 84 0.0018 27.0 9.1 68 83-161 14-91 (272)
230 PRK03501 ppnK inorganic polyph 58.6 42 0.0009 30.4 7.2 70 62-164 4-74 (264)
231 cd01536 PBP1_ABC_sugar_binding 57.6 85 0.0018 26.5 8.8 47 83-129 14-65 (267)
232 PRK10703 DNA-binding transcrip 57.3 1E+02 0.0023 27.7 9.8 63 59-129 58-125 (341)
233 TIGR03567 FMN_reduc_SsuE FMN r 57.3 81 0.0018 26.1 8.4 76 62-146 2-91 (171)
234 PF10087 DUF2325: Uncharacteri 57.1 73 0.0016 23.8 7.4 73 88-169 13-90 (97)
235 cd06302 PBP1_LsrB_Quorum_Sensi 56.5 88 0.0019 27.8 9.0 46 83-128 14-65 (298)
236 PF00834 Ribul_P_3_epim: Ribul 56.5 54 0.0012 28.4 7.3 40 89-128 96-136 (201)
237 cd06297 PBP1_LacI_like_12 Liga 56.1 77 0.0017 27.4 8.4 46 84-129 15-65 (269)
238 PRK00911 dihydroxy-acid dehydr 56.1 70 0.0015 32.2 8.8 100 50-166 22-145 (552)
239 cd06296 PBP1_CatR_like Ligand- 56.0 76 0.0016 27.2 8.3 45 84-128 15-64 (270)
240 cd06284 PBP1_LacI_like_6 Ligan 55.9 91 0.002 26.5 8.8 45 84-128 15-64 (267)
241 PLN03069 magnesiumprotoporphyr 55.9 40 0.00087 37.2 7.6 100 59-171 265-376 (1220)
242 cd06272 PBP1_hexuronate_repres 55.6 83 0.0018 26.9 8.5 46 84-129 15-61 (261)
243 PRK09271 flavodoxin; Provision 55.6 1.1E+02 0.0024 24.9 8.9 46 82-127 13-59 (160)
244 cd06323 PBP1_ribose_binding Pe 55.3 80 0.0017 26.9 8.3 67 84-161 15-86 (268)
245 cd06294 PBP1_ycjW_transcriptio 55.3 1E+02 0.0022 26.3 9.0 44 85-128 21-69 (270)
246 cd06301 PBP1_rhizopine_binding 55.2 91 0.002 26.8 8.7 67 83-160 14-86 (272)
247 PRK03767 NAD(P)H:quinone oxido 55.2 64 0.0014 27.4 7.6 65 81-146 13-95 (200)
248 PRK14075 pnk inorganic polypho 54.8 38 0.00083 30.4 6.3 60 85-165 13-72 (256)
249 PRK10014 DNA-binding transcrip 54.6 1.4E+02 0.0029 26.9 10.1 63 59-129 63-130 (342)
250 cd06317 PBP1_ABC_sugar_binding 54.4 85 0.0018 26.9 8.4 66 85-161 17-87 (275)
251 COG4242 CphB Cyanophycinase an 54.3 21 0.00046 32.4 4.4 95 62-171 54-156 (293)
252 PRK08883 ribulose-phosphate 3- 54.1 59 0.0013 28.5 7.3 40 89-128 97-137 (220)
253 cd06310 PBP1_ABC_sugar_binding 54.0 93 0.002 26.7 8.6 46 83-128 14-66 (273)
254 cd06277 PBP1_LacI_like_1 Ligan 53.8 1.2E+02 0.0026 25.9 9.3 46 83-128 17-67 (268)
255 PRK09250 fructose-bisphosphate 53.5 1.1E+02 0.0024 29.0 9.3 47 84-131 217-292 (348)
256 cd06285 PBP1_LacI_like_7 Ligan 53.3 1.2E+02 0.0025 26.0 9.0 43 86-128 17-64 (265)
257 PRK11303 DNA-binding transcrip 53.1 1.7E+02 0.0036 26.1 10.4 62 59-128 60-126 (328)
258 cd06324 PBP1_ABC_sugar_binding 52.9 1.4E+02 0.003 26.6 9.7 64 85-160 17-87 (305)
259 COG0061 nadF NAD kinase [Coenz 52.7 44 0.00096 30.4 6.5 80 62-164 2-88 (281)
260 cd06311 PBP1_ABC_sugar_binding 51.9 1.2E+02 0.0026 26.1 9.0 66 85-161 16-91 (274)
261 cd01541 PBP1_AraR Ligand-bindi 51.9 99 0.0021 26.6 8.4 45 84-128 15-64 (273)
262 cd06320 PBP1_allose_binding Pe 51.7 1.2E+02 0.0027 26.0 9.0 66 85-161 16-88 (275)
263 PRK07308 flavodoxin; Validated 51.6 1.2E+02 0.0027 24.1 8.7 76 82-161 14-90 (146)
264 PRK13017 dihydroxy-acid dehydr 51.4 75 0.0016 32.3 8.2 99 50-164 36-154 (596)
265 COG3155 ElbB Uncharacterized p 51.3 34 0.00074 29.1 4.9 52 118-174 84-147 (217)
266 cd06278 PBP1_LacI_like_2 Ligan 51.2 1.2E+02 0.0026 25.7 8.8 43 86-128 17-63 (266)
267 PF04230 PS_pyruv_trans: Polys 51.0 1.1E+02 0.0023 25.9 8.4 27 82-108 3-29 (286)
268 cd06312 PBP1_ABC_sugar_binding 50.9 1.4E+02 0.003 25.7 9.2 68 85-163 17-90 (271)
269 PLN02699 Bifunctional molybdop 50.9 64 0.0014 33.2 7.9 78 54-131 175-261 (659)
270 TIGR02634 xylF D-xylose ABC tr 50.6 1.3E+02 0.0029 26.8 9.2 62 89-161 19-85 (302)
271 TIGR00110 ilvD dihydroxy-acid 50.4 1E+02 0.0022 31.0 8.9 44 59-106 10-53 (535)
272 cd06319 PBP1_ABC_sugar_binding 50.0 1.5E+02 0.0033 25.3 9.3 45 84-128 15-64 (277)
273 COG2185 Sbm Methylmalonyl-CoA 49.7 1.1E+02 0.0024 25.3 7.6 56 92-150 34-91 (143)
274 COG0036 Rpe Pentose-5-phosphat 49.5 83 0.0018 27.9 7.3 39 89-127 100-139 (220)
275 cd06293 PBP1_LacI_like_11 Liga 49.5 1.6E+02 0.0034 25.2 9.3 45 84-128 15-64 (269)
276 cd06289 PBP1_MalI_like Ligand- 49.3 1.5E+02 0.0033 25.1 9.1 45 84-128 15-64 (268)
277 cd06321 PBP1_ABC_sugar_binding 49.3 1.2E+02 0.0025 26.1 8.5 67 84-161 15-88 (271)
278 PRK13016 dihydroxy-acid dehydr 49.2 74 0.0016 32.2 7.8 100 50-165 32-150 (577)
279 PRK06851 hypothetical protein; 49.1 57 0.0012 31.1 6.8 54 59-129 213-266 (367)
280 cd06288 PBP1_sucrose_transcrip 48.8 1.6E+02 0.0035 25.0 9.2 46 84-129 16-66 (269)
281 TIGR01481 ccpA catabolite cont 48.2 1.8E+02 0.0039 25.9 9.7 62 59-128 58-124 (329)
282 PRK14987 gluconate operon tran 48.2 1.6E+02 0.0035 26.4 9.4 62 59-128 62-128 (331)
283 COG1609 PurR Transcriptional r 47.9 1.5E+02 0.0033 27.3 9.3 61 59-127 57-122 (333)
284 PRK11104 hemG protoporphyrinog 47.6 93 0.002 26.1 7.2 75 81-165 12-88 (177)
285 cd06308 PBP1_sensor_kinase_lik 47.6 1.2E+02 0.0026 26.0 8.3 66 86-162 17-88 (270)
286 PF10662 PduV-EutP: Ethanolami 47.5 45 0.00097 27.5 5.1 37 56-101 86-122 (143)
287 PF00389 2-Hacid_dh: D-isomer 46.8 96 0.0021 24.3 6.9 43 89-133 10-52 (133)
288 cd06316 PBP1_ABC_sugar_binding 45.9 1.5E+02 0.0032 26.0 8.7 67 83-160 14-86 (294)
289 COG0521 MoaB Molybdopterin bio 45.9 49 0.0011 28.1 5.2 84 89-181 31-120 (169)
290 PRK06131 dihydroxy-acid dehydr 45.8 1.1E+02 0.0023 31.1 8.3 78 50-131 28-123 (571)
291 KOG3974 Predicted sugar kinase 45.8 58 0.0012 29.9 5.8 59 111-174 93-155 (306)
292 cd06287 PBP1_LacI_like_8 Ligan 45.7 1.3E+02 0.0028 26.3 8.2 44 83-128 22-65 (269)
293 cd05014 SIS_Kpsf KpsF-like pro 45.5 73 0.0016 24.4 5.9 69 83-163 10-82 (128)
294 PRK09722 allulose-6-phosphate 45.0 1.2E+02 0.0027 26.8 7.8 40 89-128 99-139 (229)
295 cd01574 PBP1_LacI Ligand-bindi 44.8 1.9E+02 0.0041 24.5 9.0 45 85-129 16-66 (264)
296 PRK13405 bchH magnesium chelat 44.7 80 0.0017 34.9 7.8 96 59-171 245-354 (1209)
297 cd06270 PBP1_GalS_like Ligand 44.6 1.8E+02 0.0038 24.9 8.9 44 85-128 16-64 (268)
298 PF04392 ABC_sub_bind: ABC tra 43.9 65 0.0014 29.0 6.1 68 86-163 148-219 (294)
299 cd06315 PBP1_ABC_sugar_binding 43.1 2.3E+02 0.0049 24.7 9.8 43 86-128 18-65 (280)
300 PF00365 PFK: Phosphofructokin 42.5 41 0.00089 30.7 4.6 42 122-170 4-45 (282)
301 PF00532 Peripla_BP_1: Peripla 42.5 1.9E+02 0.0042 25.7 8.9 59 61-128 2-65 (279)
302 PF00994 MoCF_biosynth: Probab 42.3 55 0.0012 26.2 4.9 76 90-174 22-102 (144)
303 cd06291 PBP1_Qymf_like Ligand 42.0 1.4E+02 0.0031 25.4 7.8 45 84-128 15-64 (265)
304 PF09822 ABC_transp_aux: ABC-t 41.4 1.6E+02 0.0035 26.1 8.3 81 58-150 144-225 (271)
305 PRK12448 dihydroxy-acid dehydr 41.4 1.4E+02 0.0029 30.6 8.3 44 59-106 32-75 (615)
306 PRK03604 moaC bifunctional mol 41.3 1.4E+02 0.003 27.8 7.9 67 62-133 157-229 (312)
307 PRK08091 ribulose-phosphate 3- 41.3 1.5E+02 0.0033 26.3 7.8 38 89-126 107-147 (228)
308 TIGR02025 BchH magnesium chela 41.2 85 0.0018 34.7 7.3 97 59-172 238-350 (1216)
309 PF02601 Exonuc_VII_L: Exonucl 40.9 1.1E+02 0.0025 27.8 7.3 42 119-166 75-117 (319)
310 PRK08745 ribulose-phosphate 3- 40.8 1.7E+02 0.0037 25.8 8.0 39 89-127 101-140 (223)
311 PRK06015 keto-hydroxyglutarate 40.5 1.2E+02 0.0027 26.3 7.0 95 58-170 2-112 (201)
312 COG3199 Predicted inorganic po 40.4 81 0.0017 29.9 6.1 37 119-168 100-136 (355)
313 PRK06851 hypothetical protein; 40.3 85 0.0018 29.9 6.4 52 59-127 29-80 (367)
314 KOG2708 Predicted metalloprote 40.3 98 0.0021 28.0 6.3 69 81-172 48-120 (336)
315 cd06280 PBP1_LacI_like_4 Ligan 40.0 1.1E+02 0.0025 26.1 6.9 43 86-128 17-64 (263)
316 TIGR02990 ectoine_eutA ectoine 40.0 2.7E+02 0.0057 24.8 9.3 59 59-130 119-192 (239)
317 cd06306 PBP1_TorT-like TorT-li 39.9 2.5E+02 0.0053 24.2 9.1 43 86-128 17-66 (268)
318 TIGR02417 fruct_sucro_rep D-fr 39.8 2.7E+02 0.0059 24.7 10.3 61 60-128 60-125 (327)
319 TIGR00200 cinA_nterm competenc 39.4 1.2E+02 0.0025 29.4 7.3 39 92-130 27-70 (413)
320 TIGR01754 flav_RNR ribonucleot 38.7 1.5E+02 0.0033 23.5 6.9 78 81-162 12-90 (140)
321 PF09897 DUF2124: Uncharacteri 38.4 13 0.00027 30.9 0.5 37 120-163 81-119 (147)
322 PRK00549 competence damage-ind 38.0 1.2E+02 0.0027 29.1 7.3 40 91-130 26-70 (414)
323 cd06314 PBP1_tmGBP Periplasmic 37.9 2.3E+02 0.0049 24.4 8.5 44 85-128 15-64 (271)
324 TIGR02482 PFKA_ATP 6-phosphofr 37.8 52 0.0011 30.4 4.5 41 122-169 3-43 (301)
325 COG4635 HemG Flavodoxin [Energ 37.7 2.1E+02 0.0046 24.3 7.6 74 83-165 14-89 (175)
326 PLN03241 magnesium chelatase s 37.5 1.2E+02 0.0027 33.9 7.9 40 59-106 315-354 (1353)
327 PRK11921 metallo-beta-lactamas 37.4 1.7E+02 0.0037 27.7 8.1 80 81-161 259-341 (394)
328 TIGR00147 lipid kinase, YegS/R 37.3 3E+02 0.0065 24.5 9.4 62 62-130 3-68 (293)
329 COG1058 CinA Predicted nucleot 37.1 1.4E+02 0.003 27.1 7.0 46 81-130 21-71 (255)
330 PRK03673 hypothetical protein; 36.6 1.5E+02 0.0033 28.5 7.6 46 81-130 21-71 (396)
331 PF06792 UPF0261: Uncharacteri 36.4 2.4E+02 0.0052 27.3 8.8 93 58-175 183-288 (403)
332 TIGR01839 PHA_synth_II poly(R) 35.3 2.1E+02 0.0046 28.9 8.6 68 88-170 237-304 (560)
333 PF00289 CPSase_L_chain: Carba 35.2 82 0.0018 24.5 4.6 62 86-150 13-74 (110)
334 TIGR02826 RNR_activ_nrdG3 anae 35.2 76 0.0016 26.0 4.7 27 120-150 62-88 (147)
335 PRK05568 flavodoxin; Provision 35.2 1E+02 0.0022 24.2 5.4 44 81-127 13-56 (142)
336 cd05564 PTS_IIB_chitobiose_lic 35.0 1.9E+02 0.0042 21.6 8.3 45 81-127 10-54 (96)
337 PRK11914 diacylglycerol kinase 34.5 3.1E+02 0.0067 24.7 9.1 61 62-130 10-75 (306)
338 TIGR03566 FMN_reduc_MsuE FMN r 34.2 2.3E+02 0.0051 23.2 7.6 57 62-126 2-75 (174)
339 PF09075 STb_secrete: Heat-sta 34.0 16 0.00034 23.6 0.3 15 158-172 32-46 (48)
340 cd01543 PBP1_XylR Ligand-bindi 33.8 2.1E+02 0.0046 24.5 7.6 44 83-127 13-58 (265)
341 cd01539 PBP1_GGBP Periplasmic 33.4 3.2E+02 0.0069 24.2 8.9 65 86-161 17-88 (303)
342 PRK09739 hypothetical protein; 33.4 1.8E+02 0.0039 24.6 6.9 38 60-105 4-41 (199)
343 cd02071 MM_CoA_mut_B12_BD meth 33.1 1.7E+02 0.0038 22.7 6.3 55 92-149 21-77 (122)
344 PF13380 CoA_binding_2: CoA bi 32.3 1.2E+02 0.0026 23.6 5.2 73 89-166 18-114 (116)
345 cd01422 MGS Methylglyoxal synt 32.1 2.2E+02 0.0048 22.1 6.7 65 89-159 35-105 (115)
346 cd06313 PBP1_ABC_sugar_binding 32.0 2.6E+02 0.0055 24.2 7.9 44 85-128 16-64 (272)
347 PRK03670 competence damage-ind 31.8 1.9E+02 0.0041 26.0 7.0 40 91-130 26-71 (252)
348 PRK07667 uridine kinase; Provi 31.7 1.2E+02 0.0026 25.5 5.5 39 59-107 16-54 (193)
349 COG0129 IlvD Dihydroxyacid deh 31.7 1.6E+02 0.0035 29.8 7.0 45 58-106 40-84 (575)
350 cd06275 PBP1_PurR Ligand-bindi 31.2 1.9E+02 0.0042 24.6 6.9 45 85-129 16-65 (269)
351 PRK04761 ppnK inorganic polyph 31.0 52 0.0011 29.6 3.2 37 117-165 23-59 (246)
352 PTZ00445 p36-lilke protein; Pr 31.0 1.5E+02 0.0033 26.2 6.1 66 86-168 30-104 (219)
353 TIGR03609 S_layer_CsaB polysac 31.0 2E+02 0.0044 25.7 7.2 50 81-131 12-76 (298)
354 PRK08005 epimerase; Validated 30.8 2E+02 0.0043 25.2 6.8 40 89-128 97-137 (210)
355 TIGR02405 trehalos_R_Ecol treh 30.8 2.3E+02 0.005 25.2 7.5 62 59-128 58-124 (311)
356 cd03143 A4_beta-galactosidase_ 30.7 1.9E+02 0.0041 23.1 6.4 53 87-150 28-80 (154)
357 cd00763 Bacterial_PFK Phosphof 30.0 82 0.0018 29.3 4.5 41 122-169 4-44 (317)
358 PRK10423 transcriptional repre 29.8 2.9E+02 0.0063 24.4 8.0 63 59-129 55-122 (327)
359 PRK09701 D-allose transporter 29.6 4.1E+02 0.0088 23.7 9.2 62 59-128 23-91 (311)
360 PLN02699 Bifunctional molybdop 29.4 2.9E+02 0.0063 28.5 8.6 73 58-131 456-536 (659)
361 cd00363 PFK Phosphofructokinas 29.3 85 0.0018 29.4 4.5 41 122-169 4-44 (338)
362 PRK01372 ddl D-alanine--D-alan 29.0 4.2E+02 0.009 23.6 9.4 41 85-126 23-63 (304)
363 PRK05452 anaerobic nitric oxid 28.5 3.7E+02 0.0079 26.4 8.9 79 82-161 264-345 (479)
364 TIGR02637 RhaS rhamnose ABC tr 28.5 3.9E+02 0.0084 23.5 8.5 66 84-160 14-86 (302)
365 COG1703 ArgK Putative periplas 27.5 1.6E+02 0.0034 27.6 5.7 43 56-108 47-89 (323)
366 PRK09932 glycerate kinase II; 27.4 68 0.0015 30.8 3.5 45 112-162 277-323 (381)
367 PRK00170 azoreductase; Reviewe 27.4 2.9E+02 0.0063 22.9 7.2 39 61-106 3-43 (201)
368 cd06286 PBP1_CcpB_like Ligand- 27.3 2.2E+02 0.0048 24.1 6.6 47 83-129 14-65 (260)
369 PRK00561 ppnK inorganic polyph 27.3 62 0.0014 29.3 3.1 36 118-165 32-67 (259)
370 TIGR02483 PFK_mixed phosphofru 26.9 97 0.0021 28.9 4.4 42 122-170 3-45 (324)
371 PRK15408 autoinducer 2-binding 26.7 4.6E+02 0.01 24.1 8.9 81 62-161 25-111 (336)
372 PRK09492 treR trehalose repres 26.6 3.2E+02 0.007 24.1 7.7 61 60-128 62-127 (315)
373 cd00532 MGS-like MGS-like doma 26.5 2.5E+02 0.0053 21.5 6.0 66 90-160 34-104 (112)
374 COG5039 Exopolysaccharide bios 26.5 5E+02 0.011 24.4 8.7 67 58-132 27-99 (339)
375 PRK06703 flavodoxin; Provision 26.5 3.3E+02 0.0072 21.6 8.5 42 81-125 13-54 (151)
376 PRK14057 epimerase; Provisiona 26.3 3.4E+02 0.0074 24.5 7.6 39 89-127 114-162 (254)
377 cd01544 PBP1_GalR Ligand-bindi 26.2 4.2E+02 0.009 22.7 9.1 41 84-127 20-60 (270)
378 cd02067 B12-binding B12 bindin 25.8 3E+02 0.0065 20.9 7.5 55 92-149 21-77 (119)
379 PRK05989 cobN cobaltochelatase 25.7 3.4E+02 0.0073 30.3 8.7 93 61-171 202-303 (1244)
380 COG1167 ARO8 Transcriptional r 25.2 2.8E+02 0.0062 26.9 7.5 61 90-150 192-260 (459)
381 cd06290 PBP1_LacI_like_9 Ligan 25.0 2.9E+02 0.0064 23.4 6.9 45 85-129 16-65 (265)
382 PRK00286 xseA exodeoxyribonucl 24.8 2.7E+02 0.0059 26.7 7.2 41 120-166 193-234 (438)
383 PRK13917 plasmid segregation p 24.7 27 0.00059 32.7 0.3 51 118-175 290-340 (344)
384 PF00920 ILVD_EDD: Dehydratase 24.6 59 0.0013 32.5 2.6 95 60-170 1-119 (521)
385 PF00885 DMRL_synthase: 6,7-di 24.6 3.7E+02 0.0081 21.9 7.0 90 59-161 2-106 (144)
386 TIGR03531 selenium_SpcS O-phos 24.4 3.1E+02 0.0067 26.8 7.5 66 88-159 162-239 (444)
387 KOG2585 Uncharacterized conser 24.4 3E+02 0.0065 27.0 7.2 64 56-130 262-327 (453)
388 PF01927 Mut7-C: Mut7-C RNAse 24.3 1.5E+02 0.0032 24.2 4.6 41 88-129 10-50 (147)
389 TIGR01755 flav_wrbA NAD(P)H:qu 24.1 3.1E+02 0.0067 23.2 6.8 64 82-146 13-94 (197)
390 cd06307 PBP1_uncharacterized_s 24.1 3.2E+02 0.0069 23.4 7.0 68 83-161 14-89 (275)
391 PRK15453 phosphoribulokinase; 24.1 1.7E+02 0.0036 27.1 5.3 39 59-107 4-42 (290)
392 TIGR03436 acidobact_VWFA VWFA- 23.6 1.8E+02 0.0038 26.1 5.4 36 122-164 168-203 (296)
393 TIGR00288 conserved hypothetic 23.6 4.3E+02 0.0093 22.2 7.3 63 88-162 69-136 (160)
394 COG1736 DPH2 Diphthamide synth 23.6 3.1E+02 0.0067 26.0 7.1 62 61-131 238-300 (347)
395 COG0205 PfkA 6-phosphofructoki 23.5 1.2E+02 0.0026 28.7 4.3 41 122-169 6-46 (347)
396 COG0431 Predicted flavoprotein 23.4 3.5E+02 0.0077 22.6 6.9 48 114-164 62-109 (184)
397 PRK05718 keto-hydroxyglutarate 23.3 4E+02 0.0087 23.2 7.4 100 58-175 13-130 (212)
398 TIGR00853 pts-lac PTS system, 23.2 3.3E+02 0.0071 20.4 8.3 44 82-127 15-58 (95)
399 PRK10342 glycerate kinase I; P 23.2 88 0.0019 30.0 3.4 45 112-162 277-323 (381)
400 COG0771 MurD UDP-N-acetylmuram 23.1 3E+02 0.0065 27.0 7.1 44 89-132 21-82 (448)
401 TIGR01140 L_thr_O3P_dcar L-thr 23.1 3.5E+02 0.0077 24.5 7.4 59 89-150 98-158 (330)
402 PLN02251 pyrophosphate-depende 23.0 1.2E+02 0.0026 30.7 4.5 43 121-168 99-141 (568)
403 PRK14071 6-phosphofructokinase 22.7 1.3E+02 0.0027 28.6 4.4 42 122-170 8-50 (360)
404 cd03142 GATase1_ThuA Type 1 gl 22.7 3.5E+02 0.0075 23.7 6.9 72 85-165 23-98 (215)
405 PRK08811 uroporphyrinogen-III 22.7 1.3E+02 0.0029 26.9 4.4 43 88-130 31-80 (266)
406 KOG4180 Predicted kinase [Gene 22.6 1E+02 0.0022 29.1 3.6 56 90-161 80-135 (395)
407 COG0386 BtuE Glutathione perox 22.5 82 0.0018 26.5 2.7 92 132-231 40-135 (162)
408 PRK02399 hypothetical protein; 22.4 2.8E+02 0.006 26.9 6.6 95 57-175 183-289 (406)
409 PRK13238 tnaA tryptophanase/L- 22.3 3.7E+02 0.008 26.2 7.6 62 90-159 129-215 (460)
410 PLN02493 probable peroxisomal 22.2 5.7E+02 0.012 24.4 8.6 84 90-175 215-303 (367)
411 PRK06696 uridine kinase; Valid 22.2 2.3E+02 0.005 24.3 5.7 37 59-105 21-57 (223)
412 cd06578 HemD Uroporphyrinogen- 22.0 4E+02 0.0086 22.2 7.1 43 88-130 11-60 (239)
413 PF08532 Glyco_hydro_42M: Beta 21.8 3.3E+02 0.0071 23.2 6.5 40 88-134 33-72 (207)
414 PF01081 Aldolase: KDPG and KH 21.6 2.9E+02 0.0063 23.9 6.1 98 60-175 8-123 (196)
415 COG1830 FbaB DhnA-type fructos 21.5 3E+02 0.0065 25.1 6.3 56 93-150 174-230 (265)
416 PRK14192 bifunctional 5,10-met 21.5 3.1E+02 0.0066 25.0 6.5 59 59-126 32-98 (283)
417 TIGR01182 eda Entner-Doudoroff 21.5 2.9E+02 0.0064 24.0 6.1 94 58-169 6-115 (204)
418 COG1929 Glycerate kinase [Carb 21.3 97 0.0021 29.6 3.2 46 112-162 277-323 (378)
419 PF04016 DUF364: Domain of unk 21.3 81 0.0018 25.8 2.5 54 90-147 23-86 (147)
420 TIGR00640 acid_CoA_mut_C methy 21.3 4.3E+02 0.0093 21.1 9.5 56 92-150 24-81 (132)
421 PRK03202 6-phosphofructokinase 20.8 1.5E+02 0.0032 27.7 4.4 41 122-169 5-45 (320)
422 PRK11041 DNA-binding transcrip 20.7 3.3E+02 0.0072 23.8 6.6 62 59-128 34-100 (309)
423 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.7 3.8E+02 0.0082 20.2 6.2 73 82-164 8-82 (126)
424 PF03308 ArgK: ArgK protein; 20.6 1.7E+02 0.0037 26.7 4.5 39 59-107 28-66 (266)
425 PF00763 THF_DHG_CYH: Tetrahyd 20.6 1.8E+02 0.0039 22.7 4.2 59 58-125 27-93 (117)
426 PRK15395 methyl-galactoside AB 20.4 6.4E+02 0.014 22.7 8.8 82 60-160 24-111 (330)
427 PRK04690 murD UDP-N-acetylmura 20.2 4.2E+02 0.009 25.7 7.5 17 89-105 22-38 (468)
No 1
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-56 Score=389.75 Aligned_cols=254 Identities=60% Similarity=1.040 Sum_probs=234.0
Q ss_pred CCccchHHHHHhhhccchhhhhhcccccchhhhhhccccccccccccCCCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCC
Q 024713 1 MWGYLWIPILFSLSKEFSSVEAQSKILLPSQRQRQQNDAVSSLSVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNA 80 (263)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~ 80 (263)
||++++++.|.++.....+......|+||+|.+.+.| ++|.|++|||++|+||||||+++|++++.+++.++
T Consensus 1 m~~~~~~~~l~~~~~S~~~~~~~~~ilLps~~g~e~S--------RspvcsapdpnlnykPvIGIL~hpg~g~~~rl~n~ 72 (340)
T KOG1559|consen 1 MWRFLFFLSLLFFMASPGALLCAESILLPSQAGFELS--------RSPVCSAPDPNLNYKPVIGILSHPGDGASGRLKNA 72 (340)
T ss_pred CcchHHHHHHHHhccChHHHHHHhheecccccccccc--------cCccccCCCCCcccCceeEEeccCCCCccceeccc
Confidence 8886666665544344447777899999999998765 68899999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
.+++||++||||.+|..||||+++.++++++.+..+++.+||||||||++....|++.++.+++++++++|+|+|+||+|
T Consensus 73 t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg 152 (340)
T KOG1559|consen 73 TGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYG 152 (340)
T ss_pred cCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccC
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L 240 (263)
||+||++|.++.+-..++++.++..+...+++|+.+.+..+++|+++|+++++.|+.+++++++|.|+|+|++|+.|+.|
T Consensus 153 ~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~L 232 (340)
T KOG1559|consen 153 ICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPAL 232 (340)
T ss_pred hhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHH
Confidence 99999999999874447889999999999999998777789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccCCCCEEEEEe
Q 024713 241 SRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 241 ~~~f~v~Ats~D~~g~~fvs~v 262 (263)
++||+|++|+.|.++++|||||
T Consensus 233 s~FFnilTT~~D~~~k~fvSTv 254 (340)
T KOG1559|consen 233 SSFFNILTTCTDGNSKTFVSTV 254 (340)
T ss_pred HHHHhheeeecCCCceEEEEee
Confidence 9999999999999999999997
No 2
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=5e-37 Score=277.72 Aligned_cols=196 Identities=47% Similarity=0.751 Sum_probs=171.3
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCC-CC-hhhHHHHH
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA-KD-GLYYAIVE 140 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~-~~-~~~~~~~~ 140 (263)
|||+++|.+... ..+...+||+++|+++++++|+++++++++.+.+.+++.++.+||||+|||+. ++ ..|....+
T Consensus 1 igil~~~~~~~~---~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~ 77 (273)
T cd01747 1 IGILTQPVDGAG---SNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAK 77 (273)
T ss_pred CeEEeeecCccc---cccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHH
Confidence 899999976432 24567899999999999999999999998866778888889999999999974 32 34555667
Q ss_pred HHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCce
Q 024713 141 KVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCL 220 (263)
Q Consensus 141 ~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~ 220 (263)
.+++.+++.+++|+++||||||+|||+|+.++||++..+...+.++...|+++++... .++||+++|+++.+.+.+++.
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~-~s~lF~~~p~~l~~~l~~~~~ 156 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDAL-QSRLFKRFPPDLLKSLATEPL 156 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccccc-cChhhhcCCHHHHHHHhcccH
Confidence 8999999999999999999999999999999999755556667788889999987655 789999999999999999999
Q ss_pred eEEEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 221 VMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 221 ~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
+|++|+|+++|+++..+..|+++|+++|++.|++|.+||++|
T Consensus 157 ~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~i 198 (273)
T cd01747 157 TMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTV 198 (273)
T ss_pred HHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEE
Confidence 999999999999998888899999999999887899999987
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.97 E-value=1.3e-30 Score=228.72 Aligned_cols=180 Identities=27% Similarity=0.387 Sum_probs=116.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCC-CCChhhHHH-
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW-AKDGLYYAI- 138 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~-~~~~~~~~~- 138 (263)
|+|||++++..... ....+...+|++++|+++++++|+++++||+..+.+.++.+++.+||||||||. +++|.+|++
T Consensus 1 PvIGI~~~~~~~~~-~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~ 79 (217)
T PF07722_consen 1 PVIGITAQPSESDS-SDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE 79 (217)
T ss_dssp -EEEEE-EE----S-HHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred CEEEEeCCcccccc-CCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence 89999999864211 112346789999999999999999999999998889999999999999999999 888777753
Q ss_pred ----------HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcc--cccccccC--------CCcceeeEEeecCC
Q 024713 139 ----------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK--NILESFNA--------ADQASTLQFMENTS 198 (263)
Q Consensus 139 ----------~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~--~~l~~~~~--------~~~~~pl~~~~~~~ 198 (263)
.++.++.++.++..++++||||||+|||+|++++||+. ++...... ....+++.+.+
T Consensus 80 ~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~--- 156 (217)
T PF07722_consen 80 PSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP--- 156 (217)
T ss_dssp -BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET---
T ss_pred ccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc---
Confidence 24666666666666667999999999999999999973 11110000 11223333321
Q ss_pred CCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 199 IEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 199 ~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
.+.|.+-+. .++..++++|||+|. .|+++|+++|++.| +..++|+.
T Consensus 157 -~s~l~~~~~-------~~~~~vns~Hhq~v~--------~l~~~l~v~A~s~D-g~iEaie~ 202 (217)
T PF07722_consen 157 -GSLLAKILG-------SEEIEVNSFHHQAVK--------PLGEGLRVTARSPD-GVIEAIES 202 (217)
T ss_dssp -TSTCCCTSH-------HCTEEEEEEECEEEC--------CHHCCEEEEEEECT-SSEEEEEE
T ss_pred -CchHHHHhC-------cCcceeecchhhhhh--------ccCCCceEEEEecC-CcEEEEEE
Confidence 333332221 145678889999994 48899999999975 67888875
No 4
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=197.13 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=127.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
.+||+|||++.......+ +++...+|....|++++..+|+.++.+|...+.+.+..+++.+||||||||.+++|.+|+
T Consensus 1 ~~kpvIGIt~~~~~~~~~--~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YG 78 (243)
T COG2071 1 MSKPVIGITADLIQEIVG--FDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYG 78 (243)
T ss_pred CCCCEEEEecchhccccc--cCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcC
Confidence 379999999988654332 355678899999999999999999999976677888888999999999999888887775
Q ss_pred H---------------H-HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcc--ccc---cccc------CCCccee
Q 024713 138 I---------------V-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK--NIL---ESFN------AADQAST 190 (263)
Q Consensus 138 ~---------------~-~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~--~~l---~~~~------~~~~~~p 190 (263)
+ . ..++++|++++ +||||||||+|+|++++||+. ++. ...+ ....+++
T Consensus 79 ee~~~~~~~~~p~RD~~E~aLi~~ALe~~-----iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~ 153 (243)
T COG2071 79 EEPSEKDGPYDPERDAFELALIRAALERG-----IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHE 153 (243)
T ss_pred CCCCcccCCCCccccHHHHHHHHHHHHcC-----CCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeE
Confidence 3 2 38999999999 999999999999999999972 211 1011 0111233
Q ss_pred eEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 191 LQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 191 l~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
++. ..++.|++-+.+. +..++.+||++| ++|+++|+|.|++.|
T Consensus 154 V~i----~~~s~La~i~g~~-------~~~VNS~HhQaI--------k~La~~L~V~A~a~D 196 (243)
T COG2071 154 VHI----EPGSKLAKILGES-------EFMVNSFHHQAI--------KKLAPGLVVEARAPD 196 (243)
T ss_pred EEe----cCCccHHHhcCcc-------ceeecchHHHHH--------HHhCCCcEEEEECCC
Confidence 333 2255665544321 146778999998 789999999999965
No 5
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.89 E-value=1e-22 Score=182.57 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=111.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCC-CCChhh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGW-AKDGLY 135 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~-~~~~~~ 135 (263)
++||+|||+++.... .+...+++...|+++++++|+.+++++... +.+.+++.++.+|||||+||+ +++|.+
T Consensus 5 m~~P~Igi~~~~~~~------~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~ 78 (254)
T PRK11366 5 MNNPVIGVVMCRNRL------KGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHL 78 (254)
T ss_pred CCCCEEEEeCCCccc------CcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhh
Confidence 468999999865321 123367899999999999999999998653 345566677889999999996 565543
Q ss_pred HH-------------HH-HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccc-cccc---CCC-----------
Q 024713 136 YA-------------IV-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNIL-ESFN---AAD----------- 186 (263)
Q Consensus 136 ~~-------------~~-~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l-~~~~---~~~----------- 186 (263)
|+ .. .++++++++++ +||||||+|||+|+.++||++..- .... .+.
T Consensus 79 yg~~~~~~~~~~~rD~~e~~li~~a~~~~-----~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~ 153 (254)
T PRK11366 79 YGENGDEPDADPGRDLLSMALINAALERR-----IPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQY 153 (254)
T ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHCC-----CCEEEECHhHHHHHHHhCCeEeecccccccccccccCCcccccccc
Confidence 32 11 37899999988 999999999999999999984210 0000 011
Q ss_pred -cceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 187 -QASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 187 -~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
..+.+.+++ .+.+..-++. .+...++.+||++| +.|+++|+++|++.|
T Consensus 154 ~~~h~v~~~~----~s~l~~i~~~------~~~~~Vns~H~q~V--------~~l~~gl~v~A~s~d 202 (254)
T PRK11366 154 APSHEVQVEE----GGLLSALLPE------CSNFWVNSLHGQGA--------KVVSPRLRVEARSPD 202 (254)
T ss_pred CCceEEEECC----CCcHHHhcCC------CceEEeehHHHHHH--------hhcccceEEEEEcCC
Confidence 012233221 2222111110 01224667899987 579999999999854
No 6
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.85 E-value=9.5e-21 Score=162.25 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHH----HHHHHHHHhCCCCCcceEEecc
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE----KVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~----~li~~a~~~~d~g~~~PILGIC 162 (263)
.+|..++++++|+++++. .++++ ++++|+|||||.+++..++....+ +.++...+.+ +|+||||
T Consensus 14 L~Sv~~Aler~G~~~~vs---~d~~~----i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~-----kP~LGIC 81 (204)
T COG0118 14 LRSVKKALERLGAEVVVS---RDPEE----ILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESG-----KPFLGIC 81 (204)
T ss_pred HHHHHHHHHHcCCeeEEe---cCHHH----HhhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcC-----CCEEEEe
Confidence 367889999999988774 34444 568999999999998777766443 4455544566 9999999
Q ss_pred chhHHHHHH--HcCccccccccc-------CCCcceee-EEeec-CCCCCcccccCChhhhhhcCCCceeEEEecceecC
Q 024713 163 LGFELLTMI--ISKDKNILESFN-------AADQASTL-QFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISP 231 (263)
Q Consensus 163 lG~QlL~~~--~GG~~~~l~~~~-------~~~~~~pl-~~~~~-~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p 231 (263)
+|||+|... +++....|..++ .+..+.|+ .|+.. ...+++||+++++ ..++||+|||++.|
T Consensus 82 lGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~--------~~~~YFVHSY~~~~ 153 (204)
T COG0118 82 LGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPD--------GAYFYFVHSYYVPP 153 (204)
T ss_pred HhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCC--------CCEEEEEEEEeecC
Confidence 999999985 443334444332 23234442 45421 1125667776654 46899999999987
Q ss_pred CCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 232 ETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 232 ~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
.+-+ .+++++ | ||.+|+|+|
T Consensus 154 ~~~~---------~v~~~~-~-YG~~f~AaV 173 (204)
T COG0118 154 GNPE---------TVVATT-D-YGEPFPAAV 173 (204)
T ss_pred CCCc---------eEEEec-c-CCCeeEEEE
Confidence 3322 367766 4 787799987
No 7
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.81 E-value=2.6e-19 Score=153.69 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=100.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.++||.. +++++|++.|+.+.++++++ +.+++.. .++|||||+|||.. |........++++ ++.+ +|||
T Consensus 7 n~Dsft~-nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~-p~~~~~~~~~~~~-~~~~-----~PiL 76 (187)
T PRK08007 7 NYDSFTW-NLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCT-PDEAGISLDVIRH-YAGR-----LPIL 76 (187)
T ss_pred CCCccHH-HHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCC-hHHCCccHHHHHH-hcCC-----CCEE
Confidence 5678886 59999999999999998874 4444432 26899999999983 3322223456665 3556 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++... ....++...++..+ .+.+|++++.+ ..++++|++.|.+ ..
T Consensus 77 GIClG~Q~la~a~Gg~v~~~-~~~~~g~~~~v~~~-----~~~l~~~~~~~--------~~v~~~H~~~v~~------~~ 136 (187)
T PRK08007 77 GVCLGHQAMAQAFGGKVVRA-AKVMHGKTSPITHN-----GEGVFRGLANP--------LTVTRYHSLVVEP------DS 136 (187)
T ss_pred EECHHHHHHHHHcCCEEEeC-CCcccCCceEEEEC-----CCCcccCCCCC--------cEEEEcchhEEcc------CC
Confidence 99999999999999985322 22234444555432 34588877643 4689999999853 24
Q ss_pred CCCCcEEEEEEcc
Q 024713 240 LSRFFKMLTTSAD 252 (263)
Q Consensus 240 L~~~f~v~Ats~D 252 (263)
++++++++|++.|
T Consensus 137 lp~~~~v~a~~~~ 149 (187)
T PRK08007 137 LPACFEVTAWSET 149 (187)
T ss_pred CCCCeEEEEEeCC
Confidence 7889999999843
No 8
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.81 E-value=2.3e-19 Score=153.61 Aligned_cols=138 Identities=20% Similarity=0.337 Sum_probs=100.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+++. ++.+++++.|+++.+++++.+.+++.. . .+||||||||+.. .+......+++.+++.+ +|+||||
T Consensus 8 ~~~~~-~l~~~l~~~g~~~~~~~~~~~~~~~~~-~-~~~glii~Gg~~~--~~~~~~~~~i~~~~~~~-----~PilGIC 77 (188)
T TIGR00888 8 SQYTQ-LIARRLRELGVYSELVPNTTPLEEIRE-K-NPKGIILSGGPSS--VYAENAPRADEKIFELG-----VPVLGIC 77 (188)
T ss_pred chHHH-HHHHHHHHcCCEEEEEeCCCCHHHHhh-c-CCCEEEECCCCCC--cCcCCchHHHHHHHhCC-----CCEEEEC
Confidence 44553 678899999999999998876666543 2 3569999999873 11112246778888888 9999999
Q ss_pred chhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCC
Q 024713 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (263)
Q Consensus 163 lG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~ 242 (263)
+|||+|+.++||++. .....+.++.++..+. .++||.++|+. ..++++|+|++ ..|++
T Consensus 78 ~G~Qll~~~lgg~v~--~~~~~~~g~~~v~~~~----~~~l~~~~~~~--------~~~~~~H~~~v--------~~l~~ 135 (188)
T TIGR00888 78 YGMQLMAKQLGGEVG--RAEKREYGKAELEILD----EDDLFRGLPDE--------STVWMSHGDKV--------KELPE 135 (188)
T ss_pred HHHHHHHHhcCceEe--cCCCccceeEEEEEec----CCHhhcCCCCC--------cEEEeEcccee--------ecCCC
Confidence 999999999999843 2222344555665442 46788887753 35788999987 45888
Q ss_pred CcEEEEEEcc
Q 024713 243 FFKMLTTSAD 252 (263)
Q Consensus 243 ~f~v~Ats~D 252 (263)
+++++|++.|
T Consensus 136 ~~~vla~~~~ 145 (188)
T TIGR00888 136 GFKVLATSDN 145 (188)
T ss_pred CCEEEEECCC
Confidence 9999999854
No 9
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.81 E-value=4.5e-19 Score=151.02 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=106.9
Q ss_pred CCchhhhHHHHHHHHHHcCCeEEEEecC-CChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 80 ATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 80 ~~~~s~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
+.++||.. ++++++++.|+++.+++.+ .+.+.++ ..++|+||++.||. .|.-.+...++++++ ..+ +||
T Consensus 8 DNyDSFty-NLv~yl~~lg~~v~V~rnd~~~~~~~~--~~~pd~iviSPGPG-~P~d~G~~~~~i~~~-~~~-----~Pi 77 (191)
T COG0512 8 DNYDSFTY-NLVQYLRELGAEVTVVRNDDISLELIE--ALKPDAIVISPGPG-TPKDAGISLELIRRF-AGR-----IPI 77 (191)
T ss_pred ECccchHH-HHHHHHHHcCCceEEEECCccCHHHHh--hcCCCEEEEcCCCC-ChHHcchHHHHHHHh-cCC-----CCE
Confidence 45689998 5999999999999998876 2333232 23589999999998 455444456788887 556 999
Q ss_pred EeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccc
Q 024713 159 YAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNL 238 (263)
Q Consensus 159 LGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~ 238 (263)
||||||+|.|++++||++... .-..|++...+.. . .+.+|+++|.++ .+..|||..+.++.
T Consensus 78 LGVCLGHQai~~~fGg~V~~a-~~~~HGK~s~i~h----~-g~~iF~glp~~f--------~v~RYHSLvv~~~~----- 138 (191)
T COG0512 78 LGVCLGHQAIAEAFGGKVVRA-KEPMHGKTSIITH----D-GSGLFAGLPNPF--------TVTRYHSLVVDPET----- 138 (191)
T ss_pred EEECccHHHHHHHhCCEEEec-CCCcCCeeeeeec----C-CcccccCCCCCC--------EEEeeEEEEecCCC-----
Confidence 999999999999999995433 2335665553321 1 468999999775 57899999886533
Q ss_pred cCCCCcEEEEEEcc
Q 024713 239 DLSRFFKMLTTSAD 252 (263)
Q Consensus 239 ~L~~~f~v~Ats~D 252 (263)
+|+.|+|+|++.|
T Consensus 139 -lP~~l~vtA~~~d 151 (191)
T COG0512 139 -LPEELEVTAESED 151 (191)
T ss_pred -CCCceEEEEEeCC
Confidence 7789999999955
No 10
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.81 E-value=4.6e-19 Score=152.26 Aligned_cols=140 Identities=15% Similarity=0.240 Sum_probs=98.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
..++|... ++++|++.|.++.+++++.. ..+ .++.+||||++||++. +..+....++++. .+.+ +|+||
T Consensus 9 ~~dsf~~~-i~~~l~~~g~~~~v~~~~~~--~~~-~l~~~d~iIi~gGp~~-~~~~~~~~~~i~~-~~~~-----~PiLG 77 (190)
T PRK06895 9 NHDSFTFN-LVDLIRKLGVPMQVVNVEDL--DLD-EVENFSHILISPGPDV-PRAYPQLFAMLER-YHQH-----KSILG 77 (190)
T ss_pred CCCchHHH-HHHHHHHcCCcEEEEECCcc--Chh-HhccCCEEEECCCCCC-hHHhhHHHHHHHH-hcCC-----CCEEE
Confidence 45778875 89999999999988886531 122 2567999999999984 3333333456665 4556 99999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccC
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L 240 (263)
||+|||+|+.++||++..... ..++.+.++... . +++||+++|+++ .+|++|+|++.+.+ +
T Consensus 78 IClG~Qlla~~~Gg~V~~~~~-~~~g~~~~v~~~---~-~~~l~~~~~~~~--------~v~~~Hs~~v~~~~------l 138 (190)
T PRK06895 78 VCLGHQTLCEFFGGELYNLNN-VRHGQQRPLKVR---S-NSPLFDGLPEEF--------NIGLYHSWAVSEEN------F 138 (190)
T ss_pred EcHHHHHHHHHhCCeEeecCC-CccCceEEEEEC---C-CChhhhcCCCce--------EEEcchhheecccc------c
Confidence 999999999999998532222 233444444332 2 678999887653 58999999996543 4
Q ss_pred CCCcEEEEEE
Q 024713 241 SRFFKMLTTS 250 (263)
Q Consensus 241 ~~~f~v~Ats 250 (263)
++.+.++|++
T Consensus 139 p~~l~~~a~~ 148 (190)
T PRK06895 139 PTPLEITAVC 148 (190)
T ss_pred CCCeEEEEEC
Confidence 5677888876
No 11
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.81 E-value=9.9e-19 Score=152.58 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=104.9
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
.+++|.. ++++.|+++|+.+++++++.+.+++.. ..+|||||+|||.. +.......++++.+. .+ +||||
T Consensus 9 ~~dsf~~-nl~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg~-~~d~~~~~~li~~~~-~~-----~PiLG 78 (208)
T PRK05637 9 NHDSFVY-NLVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPGH-PRDAGNMMALIDRTL-GQ-----IPLLG 78 (208)
T ss_pred CCcCHHH-HHHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCCC-HHHhhHHHHHHHHHh-CC-----CCEEE
Confidence 4567776 589999999999999999876565542 36899999999983 322222235666543 35 99999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhh----hhcCCCceeEEEecceecCCCccc
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLI----KKLSTDCLVMQNHHYGISPETLRK 236 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~----~~l~~~~~~~~~Hs~~V~p~~~~~ 236 (263)
||+|||+|+.++||++... ...++...++.++.... .+++|.++|.... ..++.+..++.+|++.|
T Consensus 79 IClG~Qlla~alGG~V~~~--~~~~G~~~~i~~~~~~~-~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v------- 148 (208)
T PRK05637 79 ICLGFQALLEHHGGKVEPC--GPVHGTTDNMILTDAGV-QSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGC------- 148 (208)
T ss_pred EcHHHHHHHHHcCCeeccC--CcccceEEEeEECCCCC-CCcccCCCCcccccccccccCCceEEEEechhhh-------
Confidence 9999999999999985421 12334444455554333 5679998873221 12223456889999987
Q ss_pred cccCCCCcEEEEEEcc
Q 024713 237 NLDLSRFFKMLTTSAD 252 (263)
Q Consensus 237 ~~~L~~~f~v~Ats~D 252 (263)
..++++++++|++.|
T Consensus 149 -~~lp~~~~vlA~s~~ 163 (208)
T PRK05637 149 -VVAPDGMESLGTCSS 163 (208)
T ss_pred -hcCCCCeEEEEEecC
Confidence 468899999999854
No 12
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.81 E-value=5.9e-19 Score=151.59 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=97.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.++||.. ++++.|++.|+++.+++++. +.+++.. ..+|+||++|||.. +........+++. .+.+ +|||
T Consensus 7 ~~dsf~~-nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~-~~~~~~~~~~i~~-~~~~-----~PiL 76 (191)
T PRK06774 7 NYDSFTY-NLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCT-PNEAGISLAVIRH-FADK-----LPIL 76 (191)
T ss_pred CCCchHH-HHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCC-hHhCCCchHHHHH-hcCC-----CCEE
Confidence 5678886 58999999999999999763 4555443 26899999999972 2211112355554 3556 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++..... .+.++..+... . .+++|++++.. ..++++|+|++.+ ..
T Consensus 77 GIC~G~Qlla~~~GG~v~~~~~--~~~G~~~~~~~---~-~~~lf~~l~~~--------~~v~~~Hs~~v~~------~~ 136 (191)
T PRK06774 77 GVCLGHQALGQAFGARVVRARQ--VMHGKTSAICH---S-GQGVFRGLNQP--------LTVTRYHSLVIAA------DS 136 (191)
T ss_pred EECHHHHHHHHHhCCEEEeCCc--ceecceEEEEe---c-CchhhcCCCCC--------cEEEEeCcceeec------cC
Confidence 9999999999999998532211 12233333221 2 45688877643 4689999999853 34
Q ss_pred CCCCcEEEEEEcc
Q 024713 240 LSRFFKMLTTSAD 252 (263)
Q Consensus 240 L~~~f~v~Ats~D 252 (263)
|+++++++|++.+
T Consensus 137 lp~~~~vlA~s~~ 149 (191)
T PRK06774 137 LPGCFELTAWSER 149 (191)
T ss_pred CCCCeEEEEEeCC
Confidence 6778999999853
No 13
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.80 E-value=2.8e-19 Score=153.58 Aligned_cols=105 Identities=29% Similarity=0.435 Sum_probs=81.8
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH------
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY------ 136 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~------ 136 (263)
|||+++...... .....+|+..+++++|+++|+.+++++++.+.+.++..++.+||||||||++..+..+
T Consensus 1 ~gi~~~~~~~~~----~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~ 76 (189)
T cd01745 1 IGITARLREEEG----GYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHP 76 (189)
T ss_pred CEEcCccccccC----ccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCc
Confidence 688887543321 2234789999999999999999999998876666666678899999999997543311
Q ss_pred ----------HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcc
Q 024713 137 ----------AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (263)
Q Consensus 137 ----------~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~ 176 (263)
....++++.+++.+ +||||||+|||+|+.++||++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~~~~~-----~PilgiC~G~Q~l~~~~Gg~v 121 (189)
T cd01745 77 ELGPIDPERDAFELALLRAALERG-----KPILGICRGMQLLNVALGGTL 121 (189)
T ss_pred ccCCCChhHHHHHHHHHHHHHHCC-----CCEEEEcchHHHHHHHhCCeE
Confidence 11237788888888 999999999999999999983
No 14
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.80 E-value=1.4e-18 Score=149.27 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=99.9
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.++||.. ++++++++.|+.+.+++++. +.+.+.. + .+|||||+||+.. +.......++++++ ..+ +|||
T Consensus 7 ~~dsft~-~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~-~~d~iilsgGpg~-p~~~~~~~~~i~~~-~~~-----~PvL 76 (188)
T TIGR00566 7 NYDSFTY-NLVQYFCELGAEVVVKRNDSLTLQEIEA-L-LPLLIVISPGPCT-PNEAGISLEAIRHF-AGK-----LPIL 76 (188)
T ss_pred CCcCHHH-HHHHHHHHcCCceEEEECCCCCHHHHHh-c-CCCEEEEcCCCCC-hhhcchhHHHHHHh-ccC-----CCEE
Confidence 4678886 69999999999999988753 4455433 2 5899999999962 32212224677776 556 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++.... ...++++.++..+ .+.+|.+++.. ..++++|++.|.++ .
T Consensus 77 GIC~G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~-----~~~~~~~l~~~--------~~v~~~H~~~v~~~------~ 136 (188)
T TIGR00566 77 GVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN-----GAGIFRGLFNP--------LTATRYHSLVVEPE------T 136 (188)
T ss_pred EECHHHHHHHHHcCCEEeeCC-CccccceEEEEEC-----CCccccCCCCC--------cEEEEcccceEecc------c
Confidence 999999999999999854221 1234445555543 34467766542 35789999998543 3
Q ss_pred CCCCcEEEEEEcc
Q 024713 240 LSRFFKMLTTSAD 252 (263)
Q Consensus 240 L~~~f~v~Ats~D 252 (263)
+++.++++|++.+
T Consensus 137 l~~~~~v~a~s~~ 149 (188)
T TIGR00566 137 LPTCFPVTAWEEE 149 (188)
T ss_pred CCCceEEEEEcCC
Confidence 6778999999843
No 15
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.80 E-value=1.2e-18 Score=152.52 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=100.9
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCCh-hhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPE-DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~-~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
++|.. ++++++++.|+++++++++.+. +...++++.+|||||+||+. ++........+++++++++ +|||||
T Consensus 10 ~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~-~~~~~~~~~~~i~~~~~~~-----~PiLGI 82 (214)
T PRK07765 10 DSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPG-TPERAGASIDMVRACAAAG-----TPLLGV 82 (214)
T ss_pred CcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCC-ChhhcchHHHHHHHHHhCC-----CCEEEE
Confidence 35554 6889999999999999987631 23344456899999999997 3432232347889998888 999999
Q ss_pred cchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC
Q 024713 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (263)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~ 241 (263)
|+|||+|+.++||++.. .....++...++..+ .+.+|.+++.. ..++++|+|.+.++ .++
T Consensus 83 C~G~Qlla~a~GG~v~~-~~~~~~g~~~~v~~~-----~~~~~~~~~~~--------~~v~~~H~~~v~~~------~lp 142 (214)
T PRK07765 83 CLGHQAIGVAFGATVDR-APELLHGKTSSVHHT-----GVGVLAGLPDP--------FTATRYHSLTILPE------TLP 142 (214)
T ss_pred ccCHHHHHHHhCCEEee-CCCCccCceeEEEEC-----CCccccCCCCc--------cEEEecchheEecc------cCC
Confidence 99999999999998532 112223333444332 23477766543 36889999998643 377
Q ss_pred CCcEEEEEEcc
Q 024713 242 RFFKMLTTSAD 252 (263)
Q Consensus 242 ~~f~v~Ats~D 252 (263)
++++++|++.|
T Consensus 143 ~~~~vla~s~~ 153 (214)
T PRK07765 143 AELEVTARTDS 153 (214)
T ss_pred CceEEEEEcCC
Confidence 88999999844
No 16
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.79 E-value=1.2e-18 Score=149.46 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=97.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.+++|.. +++++|++.|.++.+++++. +.+.++. + .+||||++||+.. +.......++++++ +.+ +|||
T Consensus 7 ~~d~f~~-~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~-~~dglIlsgGpg~-~~d~~~~~~~l~~~-~~~-----~PvL 76 (189)
T PRK05670 7 NYDSFTY-NLVQYLGELGAEVVVYRNDEITLEEIEA-L-NPDAIVLSPGPGT-PAEAGISLELIREF-AGK-----VPIL 76 (189)
T ss_pred CCCchHH-HHHHHHHHCCCcEEEEECCCCCHHHHHh-C-CCCEEEEcCCCCC-hHHcchHHHHHHHh-cCC-----CCEE
Confidence 3467875 69999999999999999874 3444432 3 4899999999962 22122234566653 455 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++... ....++...++. . . .+++|+++|.. ..++++|+++|.+ ..
T Consensus 77 GIClG~Qlla~alGg~v~~~-~~~~~g~~~~v~-~---~-~~~l~~~~~~~--------~~v~~~H~~~v~~------~~ 136 (189)
T PRK05670 77 GVCLGHQAIGEAFGGKVVRA-KEIMHGKTSPIE-H---D-GSGIFAGLPNP--------FTVTRYHSLVVDR------ES 136 (189)
T ss_pred EECHHHHHHHHHhCCEEEec-CCcccCceeEEE-e---C-CCchhccCCCC--------cEEEcchhheecc------cc
Confidence 99999999999999985322 112233333443 1 2 46688877643 4689999999853 24
Q ss_pred CCCCcEEEEEEc
Q 024713 240 LSRFFKMLTTSA 251 (263)
Q Consensus 240 L~~~f~v~Ats~ 251 (263)
|+++++++|++.
T Consensus 137 lp~~~~~la~s~ 148 (189)
T PRK05670 137 LPDCLEVTAWTD 148 (189)
T ss_pred CCCceEEEEEeC
Confidence 778999999993
No 17
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.79 E-value=2.9e-18 Score=147.65 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=96.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.++||.. ++++++++.|+.+.+++++. +.+.+.. ..+|+|+++||+.- +........++++ ++.+ +|||
T Consensus 7 ~~dsft~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~-~~~~~~~~~~i~~-~~~~-----~PiL 76 (193)
T PRK08857 7 NYDSFTY-NLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCT-PNEAGISLQAIEH-FAGK-----LPIL 76 (193)
T ss_pred CCCCcHH-HHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCC-hHHCcchHHHHHH-hcCC-----CCEE
Confidence 4578886 59999999999999999763 3333322 25899999999962 2211112356665 3566 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++... ....++...++..+ .+.+|.++|.. ..++++|+++|.+ ..
T Consensus 77 GIClG~Qlia~a~Gg~v~~~-~~~~~G~~~~~~~~-----~~~l~~~~~~~--------~~v~~~H~~~v~~------~~ 136 (193)
T PRK08857 77 GVCLGHQAIAQVFGGQVVRA-RQVMHGKTSPIRHT-----GRSVFKGLNNP--------LTVTRYHSLVVKN------DT 136 (193)
T ss_pred EEcHHHHHHHHHhCCEEEeC-CCceeCceEEEEEC-----CCcccccCCCc--------cEEEEccEEEEEc------CC
Confidence 99999999999999985322 11122222333321 45688877544 3689999999842 35
Q ss_pred CCCCcEEEEEEc
Q 024713 240 LSRFFKMLTTSA 251 (263)
Q Consensus 240 L~~~f~v~Ats~ 251 (263)
|+++|+++|++.
T Consensus 137 lp~~~~v~a~s~ 148 (193)
T PRK08857 137 LPECFELTAWTE 148 (193)
T ss_pred CCCCeEEEEEec
Confidence 888999999985
No 18
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.79 E-value=6.8e-19 Score=149.27 Aligned_cols=138 Identities=19% Similarity=0.299 Sum_probs=96.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
++|.. ++.++|+++|+.+++++++.+.+. ..++++||||+|||+... +......+.+++++.+ +|+||||
T Consensus 8 ~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~~dgvIl~Gg~~~~--~~~~~~~~~~~~~~~~-----~PilGIC 77 (181)
T cd01742 8 SQYTH-LIARRVRELGVYSEILPNTTPLEE--IKLKNPKGIILSGGPSSV--YEEDAPRVDPEIFELG-----VPVLGIC 77 (181)
T ss_pred CchHH-HHHHHHHhcCceEEEecCCCChhh--hcccCCCEEEECCCcccc--cccccchhhHHHHhcC-----CCEEEEc
Confidence 44543 577899999999999998765442 236789999999998621 1110123445555667 9999999
Q ss_pred chhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCC
Q 024713 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (263)
Q Consensus 163 lG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~ 242 (263)
+|||+|+.++||++. .....+.++.++..+ . .+++|+++|.. ..++++|++.| ..+++
T Consensus 78 ~G~Qll~~~~gg~v~--~~~~~~~G~~~v~~~---~-~~~l~~~~~~~--------~~~~~~H~~~v--------~~l~~ 135 (181)
T cd01742 78 YGMQLIAKALGGKVE--RGDKREYGKAEIEID---D-SSPLFEGLPDE--------QTVWMSHGDEV--------VKLPE 135 (181)
T ss_pred HHHHHHHHhcCCeEE--eCCCCcceEEEEEec---C-CChhhcCCCCc--------eEEEcchhhhh--------hhcCC
Confidence 999999999999743 222234445555332 2 57789888754 35788999987 45788
Q ss_pred CcEEEEEEcc
Q 024713 243 FFKMLTTSAD 252 (263)
Q Consensus 243 ~f~v~Ats~D 252 (263)
+++++|++.|
T Consensus 136 ~~~~la~~~~ 145 (181)
T cd01742 136 GFKVIASSDN 145 (181)
T ss_pred CcEEEEeCCC
Confidence 9999999843
No 19
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.78 E-value=1.6e-18 Score=148.11 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=105.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
.+++|.. ++++++++.|..+.+++++.+.+...+.++++||||++||+..... ......+++++.+.+ +|+||
T Consensus 5 ~~~~~~~-~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~~-----~PilG 77 (192)
T PF00117_consen 5 NGDSFTH-SLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IEGLIELIREARERK-----IPILG 77 (192)
T ss_dssp SSHTTHH-HHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCHHHHH-HHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-ccccccccccccccc-----eEEEE
Confidence 4566765 7999999999999999987644433224788999999999873211 445568899998888 99999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccC
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L 240 (263)
||+|||+|+.++||++.........+...++..+. .+++|.++|+.+ .++++|++.|.+. ..+
T Consensus 78 IC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~--------~~~~~H~~~v~~~-----~~~ 140 (192)
T PF00117_consen 78 ICLGHQILAHALGGKVVPSPEKPHHGGNIPISETP----EDPLFYGLPESF--------KAYQYHSDAVNPD-----DLL 140 (192)
T ss_dssp ETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE----EHGGGTTSTSEE--------EEEEEECEEEEEG-----HHH
T ss_pred EeehhhhhHHhcCCccccccccccccccccccccc----cccccccccccc--------ccccccceeeecc-----ccc
Confidence 99999999999999843221122233333443321 246787776553 6789999998543 227
Q ss_pred CCCcEEEEEEcc
Q 024713 241 SRFFKMLTTSAD 252 (263)
Q Consensus 241 ~~~f~v~Ats~D 252 (263)
+++++++|++.+
T Consensus 141 p~~~~~la~s~~ 152 (192)
T PF00117_consen 141 PEGFEVLASSSD 152 (192)
T ss_dssp HTTEEEEEEETT
T ss_pred cccccccccccc
Confidence 788999999943
No 20
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.78 E-value=6.1e-18 Score=143.84 Aligned_cols=130 Identities=20% Similarity=0.387 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHH
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL 168 (263)
+++++++++|+++++++++.+.+.+. ...+||||++||+. ++.......++++++++++ +||||||+|||+|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~-~~~~~~~~~~~~~~~~~~~-----~PvlGIC~G~Q~l 82 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPG-DPALLDEAIKTVRKLLGKK-----IPIFGICLGHQLL 82 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCC-ChhHhHHHHHHHHHHHhCC-----CCEEEECHHHHHH
Confidence 57899999999999999887655432 34799999999986 2333344457899999888 9999999999999
Q ss_pred HHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEE
Q 024713 169 TMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLT 248 (263)
Q Consensus 169 ~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~A 248 (263)
+.++||++... ....++..+++.... .... ..++++|++++.++ .++++|+++|
T Consensus 83 ~~~~Gg~v~~~-~~~~~g~~~~v~~~~----~~~~---------------~~v~~~H~~~v~~~------~lp~~~~v~a 136 (178)
T cd01744 83 ALALGAKTYKM-KFGHRGSNHPVKDLI----TGRV---------------YITSQNHGYAVDPD------SLPGGLEVTH 136 (178)
T ss_pred HHHcCCceecC-CCCCCCCceeeEEcC----CCCc---------------EEEEcCceEEEccc------ccCCceEEEE
Confidence 99999985321 222233334443221 1111 13577999998643 4677999999
Q ss_pred EEcc
Q 024713 249 TSAD 252 (263)
Q Consensus 249 ts~D 252 (263)
++.+
T Consensus 137 ~s~~ 140 (178)
T cd01744 137 VNLN 140 (178)
T ss_pred EECC
Confidence 9854
No 21
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.77 E-value=6.8e-18 Score=143.93 Aligned_cols=142 Identities=16% Similarity=0.258 Sum_probs=95.9
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
+++|.. .+.++++++|+++.+++++.+.+.+.+ +.++||||++||+.. +......+.+.+. ++++ +|+|||
T Consensus 7 ~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~-~~~~~~~~~i~~~-~~~~-----~PvlGI 77 (184)
T cd01743 7 YDSFTY-NLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGH-PEDAGISLEIIRA-LAGK-----VPILGV 77 (184)
T ss_pred CCccHH-HHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCC-cccchhHHHHHHH-HhcC-----CCEEEE
Confidence 456654 588999999999999999876554333 468999999999873 2111122344444 4556 999999
Q ss_pred cchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC
Q 024713 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (263)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~ 241 (263)
|+|||+|+.++||++. ......++.+.++..+ .+.+|+++|+. ..++++|+|+|.+....
T Consensus 78 C~G~Qlla~~~Gg~v~-~~~~~~~g~~~~v~~~-----~~~~~~~~~~~--------~~~~~~H~~~v~~~~~~------ 137 (184)
T cd01743 78 CLGHQAIAEAFGGKVV-RAPEPMHGKTSEIHHD-----GSGLFKGLPQP--------FTVGRYHSLVVDPDPLP------ 137 (184)
T ss_pred CHhHHHHHHHhCCEEE-eCCCCCcCceeEEEEC-----CCccccCCCCC--------cEEEeCcEEEEecCCCC------
Confidence 9999999999999843 2222233444555432 45678777643 36899999998543321
Q ss_pred CCcEEEEEEcc
Q 024713 242 RFFKMLTTSAD 252 (263)
Q Consensus 242 ~~f~v~Ats~D 252 (263)
+.++++|++.|
T Consensus 138 ~~~~~la~~~~ 148 (184)
T cd01743 138 DLLEVTASTED 148 (184)
T ss_pred ceEEEEEeCCC
Confidence 23788888743
No 22
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.77 E-value=4.2e-18 Score=147.20 Aligned_cols=141 Identities=14% Similarity=0.207 Sum_probs=97.0
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.++||.. +++++|++.|.++.+++++. +.+.+.. .++|||||+|||.. |........+++.. +.+ +|+|
T Consensus 7 n~dsft~-nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~-p~~~~~~~~~i~~~-~~~-----~PvL 76 (195)
T PRK07649 7 NYDSFTF-NLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCS-PNEAGISMEVIRYF-AGK-----IPIF 76 (195)
T ss_pred CCCccHH-HHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCC-hHhCCCchHHHHHh-cCC-----CCEE
Confidence 4578886 59999999999999998873 3344332 36899999999973 22111123445433 456 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++.... ...++.+.++.. . .+++|+++|.. ..++++|++.+.++ .
T Consensus 77 GIClG~Qlla~~lGg~V~~~~-~~~~G~~~~i~~----~-~~~lf~~~~~~--------~~v~~~H~~~v~~~------~ 136 (195)
T PRK07649 77 GVCLGHQSIAQVFGGEVVRAE-RLMHGKTSLMHH----D-GKTIFSDIPNP--------FTATRYHSLIVKKE------T 136 (195)
T ss_pred EEcHHHHHHHHHcCCEEeeCC-CcccCCeEEEEE----C-CChhhcCCCCC--------CEEEEechheEecc------c
Confidence 999999999999999854222 123343333321 2 45689888754 36899999988432 3
Q ss_pred CCCCcEEEEEEc
Q 024713 240 LSRFFKMLTTSA 251 (263)
Q Consensus 240 L~~~f~v~Ats~ 251 (263)
++++++++|++.
T Consensus 137 lp~~~~~~a~s~ 148 (195)
T PRK07649 137 LPDCLEVTSWTE 148 (195)
T ss_pred CCCCeEEEEEcC
Confidence 778899999884
No 23
>PLN02335 anthranilate synthase
Probab=99.77 E-value=5.1e-18 Score=149.46 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=97.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.+++|.. +++++|+++|+.+.+++++. +.+.+. ...+|||||+|||.. |...+...++++. ...+ +|||
T Consensus 26 ~~dsft~-~i~~~L~~~g~~~~v~~~~~~~~~~~~--~~~~d~iVisgGPg~-p~d~~~~~~~~~~-~~~~-----~PiL 95 (222)
T PLN02335 26 NYDSFTY-NLCQYMGELGCHFEVYRNDELTVEELK--RKNPRGVLISPGPGT-PQDSGISLQTVLE-LGPL-----VPLF 95 (222)
T ss_pred CCCCHHH-HHHHHHHHCCCcEEEEECCCCCHHHHH--hcCCCEEEEcCCCCC-hhhccchHHHHHH-hCCC-----CCEE
Confidence 3456765 58999999999999998763 444332 236899999999983 2111111223322 2334 9999
Q ss_pred eccchhHHHHHHHcCccccccccc-CCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNL 238 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~-~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~ 238 (263)
|||+|||+|+.++||++. ..... .++...++.++.. . .++||+++|.. ..++++|+++|.++.
T Consensus 96 GIClG~QlLa~alGg~v~-~~~~~~~~G~~~~v~~~~~-~-~~~Lf~~l~~~--------~~v~~~H~~~v~~~~----- 159 (222)
T PLN02335 96 GVCMGLQCIGEAFGGKIV-RSPFGVMHGKSSPVHYDEK-G-EEGLFSGLPNP--------FTAGRYHSLVIEKDT----- 159 (222)
T ss_pred EecHHHHHHHHHhCCEEE-eCCCccccCceeeeEECCC-C-CChhhhCCCCC--------CEEEechhheEeccc-----
Confidence 999999999999999853 22222 3445666765532 2 46799888743 368999999997655
Q ss_pred cCCCC-cEEEEEEcc
Q 024713 239 DLSRF-FKMLTTSAD 252 (263)
Q Consensus 239 ~L~~~-f~v~Ats~D 252 (263)
+++. |+++|++.|
T Consensus 160 -lp~~~~~v~a~~~~ 173 (222)
T PLN02335 160 -FPSDELEVTAWTED 173 (222)
T ss_pred -CCCCceEEEEEcCC
Confidence 3444 899998833
No 24
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.76 E-value=1.5e-17 Score=155.85 Aligned_cols=132 Identities=17% Similarity=0.356 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
..+++++|+++|+++++++++.+.+++.. .++|||||+||+. +|.......++++++++.+ +||||||+|||
T Consensus 188 k~nivr~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIvLSgGPg-dp~~~~~~~~~i~~~~~~~-----~PilGIClG~Q 259 (360)
T PRK12564 188 KRNILRELAERGCRVTVVPATTTAEEILA--LNPDGVFLSNGPG-DPAALDYAIEMIRELLEKK-----IPIFGICLGHQ 259 (360)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHh--cCCCEEEEeCCCC-ChHHHHHHHHHHHHHHHcC-----CeEEEECHHHH
Confidence 35799999999999999999876666543 2699999999986 3443344458889988878 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEE
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v 246 (263)
+|+.++||++..+ .+..++..+|+.... ..+ ...+.++|+|+|.++. |+++|++
T Consensus 260 lLa~a~Gg~v~kl-~~gh~G~~~pv~~~~----~~~---------------~~its~~H~~~V~~~~------lp~~l~v 313 (360)
T PRK12564 260 LLALALGAKTYKM-KFGHRGANHPVKDLE----TGK---------------VEITSQNHGFAVDEDS------LPANLEV 313 (360)
T ss_pred HHHHHhCCcEecc-CCCccCCceeeEECC----CCc---------------EEEEecCcccEEcccc------cCCceEE
Confidence 9999999985432 344555556664321 111 1246779999997554 5678999
Q ss_pred EEEEcc
Q 024713 247 LTTSAD 252 (263)
Q Consensus 247 ~Ats~D 252 (263)
++++.+
T Consensus 314 ~a~~~~ 319 (360)
T PRK12564 314 THVNLN 319 (360)
T ss_pred EEEeCC
Confidence 999854
No 25
>CHL00101 trpG anthranilate synthase component 2
Probab=99.76 E-value=8.5e-18 Score=144.50 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=96.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.++||.. +++++|++.|.++.+++++. +.+.+. ...+||||++||+.. +........++++ ++.+ +|+|
T Consensus 7 ~~dsft~-~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiisgGpg~-~~~~~~~~~i~~~-~~~~-----~PiL 76 (190)
T CHL00101 7 NYDSFTY-NLVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIISPGPGH-PRDSGISLDVISS-YAPY-----IPIL 76 (190)
T ss_pred CCCchHH-HHHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEECCCCCC-hHHCcchHHHHHH-hcCC-----CcEE
Confidence 4567775 58999999999999988763 333332 236899999999972 3221222355554 4566 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|||+|+.++||++.... ...++.+..+ .. . .+++|+++|.. ..++++|+|+|.+ ..
T Consensus 77 GIClG~Qlla~~~Gg~V~~~~-~~~~g~~~~~-~~---~-~~~l~~~~~~~--------~~v~~~H~~~v~~------~~ 136 (190)
T CHL00101 77 GVCLGHQSIGYLFGGKIIKAP-KPMHGKTSKI-YH---N-HDDLFQGLPNP--------FTATRYHSLIIDP------LN 136 (190)
T ss_pred EEchhHHHHHHHhCCEEEECC-CcccCceeeE-ee---C-CcHhhccCCCc--------eEEEcchhheeec------cc
Confidence 999999999999999854221 1223333222 11 2 45688877654 3678999999853 24
Q ss_pred CCCCcEEEEEEcc
Q 024713 240 LSRFFKMLTTSAD 252 (263)
Q Consensus 240 L~~~f~v~Ats~D 252 (263)
|+++++++|++.|
T Consensus 137 lp~~~~vla~s~~ 149 (190)
T CHL00101 137 LPSPLEITAWTED 149 (190)
T ss_pred CCCceEEEEEcCC
Confidence 7788999999843
No 26
>PRK00758 GMP synthase subunit A; Validated
Probab=99.75 E-value=6.9e-18 Score=143.99 Aligned_cols=133 Identities=16% Similarity=0.270 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccC-CEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~-dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.+|.. ++.++++++|+++.+++++.+.++ ++++ ||||+|||++. .+.. .+.+.+.+.+ +|||||
T Consensus 9 ~~~~~-~i~~~l~~~g~~~~~~~~~~~~~~----l~~~~dgivi~Gg~~~--~~~~---~~~~~l~~~~-----~PilGI 73 (184)
T PRK00758 9 GQYNH-LIHRTLRYLGVDAKIIPNTTPVEE----IKAFEDGLILSGGPDI--ERAG---NCPEYLKELD-----VPILGI 73 (184)
T ss_pred CchHH-HHHHHHHHcCCcEEEEECCCCHHH----HhhcCCEEEECCCCCh--hhcc---ccHHHHHhCC-----CCEEEE
Confidence 34543 577899999999999998766544 3456 99999999852 2222 1222232456 999999
Q ss_pred cchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC
Q 024713 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (263)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~ 241 (263)
|+|||+|+.++||++.. ....+.+..++.++. .+.+|.++|+. ..++++|++.+ ..++
T Consensus 74 C~G~Q~L~~a~Gg~v~~--~~~~~~g~~~i~~~~----~~~l~~~~~~~--------~~~~~~H~~~v--------~~l~ 131 (184)
T PRK00758 74 CLGHQLIAKAFGGEVGR--GEYGEYALVEVEILD----EDDILKGLPPE--------IRVWASHADEV--------KELP 131 (184)
T ss_pred eHHHHHHHHhcCcEEec--CCCceeeeEEEEEcC----CChhhhCCCCC--------cEEEeehhhhh--------hhCC
Confidence 99999999999998431 112233344454432 45678777654 36789999976 3588
Q ss_pred CCcEEEEEEcc
Q 024713 242 RFFKMLTTSAD 252 (263)
Q Consensus 242 ~~f~v~Ats~D 252 (263)
++++++|++.|
T Consensus 132 ~~~~~la~~~~ 142 (184)
T PRK00758 132 DGFEILARSDI 142 (184)
T ss_pred CCCEEEEECCC
Confidence 89999999844
No 27
>PLN02347 GMP synthetase
Probab=99.75 E-value=2.4e-17 Score=161.51 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=103.5
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--ChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.+.+|.. +++++++++|..+++++++.+.+++.. ..+||||||||+.. +.........+++.+.+.+ +||
T Consensus 18 ~G~~~t~-~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~-----iPI 89 (536)
T PLN02347 18 YGSQYTH-LITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERG-----VPV 89 (536)
T ss_pred CCCcHHH-HHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCcccccCCchhhHHHHHHHHhcC-----CcE
Confidence 3455654 678899999999999999877766543 26899999999862 1111112346777776667 999
Q ss_pred EeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccc
Q 024713 159 YAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNL 238 (263)
Q Consensus 159 LGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~ 238 (263)
||||+|||+|+.++||++... ...+.++.++.+. . +++||+++|... ...+|++|++.+ .
T Consensus 90 LGIClG~QlLa~alGG~V~~~--~~~e~G~~~v~i~---~-~~~Lf~~l~~~~------~~~v~~~Hsd~V--------~ 149 (536)
T PLN02347 90 LGICYGMQLIVQKLGGEVKPG--EKQEYGRMEIRVV---C-GSQLFGDLPSGE------TQTVWMSHGDEA--------V 149 (536)
T ss_pred EEECHHHHHHHHHcCCEEEec--CCcccceEEEEEc---C-CChhhhcCCCCc------eEEEEEEEEEEe--------e
Confidence 999999999999999985321 2244556666542 2 567998887531 136789999976 4
Q ss_pred cCCCCcEEEEEEcc
Q 024713 239 DLSRFFKMLTTSAD 252 (263)
Q Consensus 239 ~L~~~f~v~Ats~D 252 (263)
.++++|+++|++.|
T Consensus 150 ~lP~g~~vlA~s~~ 163 (536)
T PLN02347 150 KLPEGFEVVAKSVQ 163 (536)
T ss_pred eCCCCCEEEEEeCC
Confidence 58899999999943
No 28
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.75 E-value=2.9e-17 Score=153.77 Aligned_cols=131 Identities=18% Similarity=0.358 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
.+++++|+++|++++++|++.+.+++.. ..+|||||+|||. +|.......++++++++ + +||||||+|||+
T Consensus 185 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~pDGIiLSgGPg-dp~~~~~~i~~i~~~~~-~-----~PILGIClG~Ql 255 (358)
T TIGR01368 185 QNILRRLVKRGCEVTVVPYDTDAEEIKK--YNPDGIFLSNGPG-DPAAVEPAIETIRKLLE-K-----IPIFGICLGHQL 255 (358)
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHh--hCCCEEEECCCCC-CHHHHHHHHHHHHHHHc-C-----CCEEEECHHHHH
Confidence 3688999999999999998876555433 1469999999987 45444444477888876 6 999999999999
Q ss_pred HHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEE
Q 024713 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (263)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~ 247 (263)
|+.++||++..+ .+..++..+|+.... ..++| .+.++|+|+|.++.+ +.++|+++
T Consensus 256 La~a~Gg~v~kl-~~gh~G~nhpV~~~~----~~~v~---------------itsqnH~~aV~~~~l-----~~~~l~vt 310 (358)
T TIGR01368 256 LALAFGAKTYKM-KFGHRGGNHPVKDLI----TGRVE---------------ITSQNHGYAVDPDSL-----PAGDLEVT 310 (358)
T ss_pred HHHHhCCceecc-CcCcCCCceeeEECC----CCcEE---------------EeecCCCcEEccccc-----CCCceEEE
Confidence 999999985432 344555566664321 22222 456789999976553 22679999
Q ss_pred EEEcc
Q 024713 248 TTSAD 252 (263)
Q Consensus 248 Ats~D 252 (263)
+++.+
T Consensus 311 a~~~n 315 (358)
T TIGR01368 311 HVNLN 315 (358)
T ss_pred EEECC
Confidence 99854
No 29
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.73 E-value=3.5e-17 Score=145.41 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=98.2
Q ss_pred HHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC---ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 91 VKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 91 v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~---~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
.+.++..|.....+...... .+. .+..+||||++||+.. +..|....+++++.+++.+ +||||||+|||+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~-~~p-~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~-----~PvlGIC~G~Ql 100 (237)
T PRK09065 28 RVALGLAEQPVVVVRVFAGE-PLP-APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAG-----MPLLGICYGHQL 100 (237)
T ss_pred HHHhccCCceEEEEeccCCC-CCC-ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCC-----CCEEEEChhHHH
Confidence 34555678777776655422 222 2567999999999963 2234444568899998888 999999999999
Q ss_pred HHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEE
Q 024713 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (263)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~ 247 (263)
|+.++||++. ......+.+..++.++.... .+++|+++|+.+ .++++|++.| ..||++++++
T Consensus 101 la~alGg~V~-~~~~g~e~G~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~d~v--------~~lp~~~~~l 162 (237)
T PRK09065 101 LAHALGGEVG-YNPAGRESGTVTVELHPAAA-DDPLFAGLPAQF--------PAHLTHLQSV--------LRLPPGAVVL 162 (237)
T ss_pred HHHHcCCccc-cCCCCCccceEEEEEccccc-cChhhhcCCccC--------cEeeehhhhh--------hhCCCCCEEE
Confidence 9999999853 22233456677777765433 567888877543 5788999986 3588999999
Q ss_pred EEEcc
Q 024713 248 TTSAD 252 (263)
Q Consensus 248 Ats~D 252 (263)
|++.+
T Consensus 163 a~s~~ 167 (237)
T PRK09065 163 ARSAQ 167 (237)
T ss_pred EcCCC
Confidence 99854
No 30
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.73 E-value=5.8e-17 Score=138.30 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=102.8
Q ss_pred HHHHHHHHHHcC---CeEEEEecCCChhhHHHhcccCCEEEECCCCCCC----hhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 87 AASYVKFVESAG---ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----GLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 87 ~~s~v~~le~~G---~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~----~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
...+.++++++| .++.++++..... ...++.+|||||+||+... ..+.....++++++++++ +|+|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pil 85 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG-----KPVL 85 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC-----CCEE
Confidence 346888999999 5788777765432 2236789999999998632 233344568899998888 9999
Q ss_pred eccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 160 AHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 160 GIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
|||+|+|+|+.++||++. ......+.+..++.++.... .+++|+++++. ..++++|+++| ..
T Consensus 86 giC~G~q~l~~~lGG~v~-~~~~~~~~g~~~v~~~~~~~-~~~l~~~~~~~--------~~v~~~H~~~v--------~~ 147 (188)
T cd01741 86 GICLGHQLLARALGGKVG-RNPKGWEIGWFPVTLTEAGK-ADPLFAGLPDE--------FPVFHWHGDTV--------VE 147 (188)
T ss_pred EECccHHHHHHHhCCEEe-cCCCcceeEEEEEEeccccc-cCchhhcCCCc--------ceEEEEeccCh--------hh
Confidence 999999999999999843 22222355677777765433 56678776644 36899999998 34
Q ss_pred CCCCcEEEEEEcc
Q 024713 240 LSRFFKMLTTSAD 252 (263)
Q Consensus 240 L~~~f~v~Ats~D 252 (263)
++++++++|++.|
T Consensus 148 lp~~~~~la~~~~ 160 (188)
T cd01741 148 LPPGAVLLASSEA 160 (188)
T ss_pred CCCCCEEeecCCC
Confidence 8889999999854
No 31
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.72 E-value=6.2e-17 Score=140.22 Aligned_cols=136 Identities=17% Similarity=0.254 Sum_probs=98.2
Q ss_pred HHHHHHHcC-CeEEEEecCCChhhHHHhcccCCEEEECCCCCC--Ch-hhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 90 YVKFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 90 ~v~~le~~G-~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+.+++++.| ...++.+++.+.+.++ ..+.|||||+||++. ++ .|.......+..+...+ +||||||+||
T Consensus 17 i~r~~re~g~v~~e~~~~~~~~~~~~--~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~-----~pvLGIC~G~ 89 (198)
T COG0518 17 IARRLRELGYVYSEIVPYTGDAEELP--LDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPG-----KPVLGICLGH 89 (198)
T ss_pred HHHHHHHcCCceEEEEeCCCCccccc--ccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCC-----CCEEEEChhH
Confidence 456899999 7788888887666543 335699999999962 11 13333345555554455 7899999999
Q ss_pred HHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcE
Q 024713 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFK 245 (263)
Q Consensus 166 QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~ 245 (263)
|+|+.++||++.. ....+.++.+++.+. . .+.+|+++|+... .++.+|...+ .+||++|+
T Consensus 90 Ql~A~~lGg~V~~--~~~~E~G~~~v~~~~--~-~~~l~~gl~~~~~-------~v~~sH~D~v--------~~lP~g~~ 149 (198)
T COG0518 90 QLLAKALGGKVER--GPKREIGWTPVELTE--G-DDPLFAGLPDLFT-------TVFMSHGDTV--------VELPEGAV 149 (198)
T ss_pred HHHHHHhCCEEec--cCCCccceEEEEEec--C-ccccccCCccccC-------ccccchhCcc--------ccCCCCCE
Confidence 9999999998542 122688888888764 2 3479999886531 3677888765 67999999
Q ss_pred EEEEEcc
Q 024713 246 MLTTSAD 252 (263)
Q Consensus 246 v~Ats~D 252 (263)
++|+|..
T Consensus 150 vlA~s~~ 156 (198)
T COG0518 150 VLASSET 156 (198)
T ss_pred EEecCCC
Confidence 9999844
No 32
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.70 E-value=1.2e-16 Score=138.12 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHH-HHHHHHHHhCCCCCcceEEeccchhH
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE-KVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~-~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
.|+.++|++.|++++++. +.++ ++++|+|||||++.....+....+ .+++.+.+.+ +||||||+|||
T Consensus 14 ~s~~~~l~~~g~~~~~v~---~~~~----~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~~~-----~PilGIClG~Q 81 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSR---DPDV----ILAADKLFLPGVGTAQAAMDQLRERELIDLIKACT-----QPVLGICLGMQ 81 (196)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----hCCCCEEEECCCCchHHHHHHHHHcChHHHHHHcC-----CCEEEECHHHH
Confidence 367889999999888874 2333 567899999997764333322222 5677777767 99999999999
Q ss_pred HHHHHHcCc--ccccc-------ccc------CCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecC
Q 024713 167 LLTMIISKD--KNILE-------SFN------AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISP 231 (263)
Q Consensus 167 lL~~~~GG~--~~~l~-------~~~------~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p 231 (263)
+|+.++++. ...+. +++ .+.++.++.+. . ++++|+++|++ ..+|++|+|++.+
T Consensus 82 ll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~---~-~~~l~~~l~~~--------~~v~~~Hs~~lp~ 149 (196)
T PRK13170 82 LLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQ---A-GHPLFQGIEDG--------SYFYFVHSYAMPV 149 (196)
T ss_pred HHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeC---C-CChhhhCCCcC--------CEEEEECeeecCC
Confidence 999997432 11121 111 11222223221 2 56677776644 5789999998743
Q ss_pred CCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 232 ETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 232 ~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
+. .++|++ ++|..|++++
T Consensus 150 ~~-----------~~la~s--~~~~~~~~~~ 167 (196)
T PRK13170 150 NE-----------YTIAQC--NYGEPFSAAI 167 (196)
T ss_pred CC-----------cEEEEe--cCCCeEEEEE
Confidence 21 366776 3577887764
No 33
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.70 E-value=7.5e-17 Score=157.67 Aligned_cols=138 Identities=17% Similarity=0.275 Sum_probs=98.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+|. ..+.++|+++|+.+++++++.+.+++... ++||||||||+.. .+......+.+.+++.+ +||||||
T Consensus 13 sq~~-~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~s--v~~~~~p~~~~~i~~~~-----~PvLGIC 82 (511)
T PRK00074 13 SQYT-QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPAS--VYEEGAPRADPEIFELG-----VPVLGIC 82 (511)
T ss_pred CCcH-HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcc--cccCCCccccHHHHhCC-----CCEEEEC
Confidence 3444 35778999999999999998776665432 5699999999872 11001112334555667 9999999
Q ss_pred chhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCC
Q 024713 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (263)
Q Consensus 163 lG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~ 242 (263)
+|||+|+.++||++.. ....+.+..++.++. +++||++++.. ..++.+|++.| ..+++
T Consensus 83 ~G~QlLa~~lGG~V~~--~~~~e~G~~~i~i~~----~~~Lf~~l~~~--------~~v~~~H~d~V--------~~lp~ 140 (511)
T PRK00074 83 YGMQLMAHQLGGKVER--AGKREYGRAELEVDN----DSPLFKGLPEE--------QDVWMSHGDKV--------TELPE 140 (511)
T ss_pred HHHHHHHHHhCCeEEe--cCCcccceEEEEEcC----CChhhhcCCCc--------eEEEEECCeEE--------EecCC
Confidence 9999999999998432 222445566665532 56788877643 36788999987 45889
Q ss_pred CcEEEEEEcc
Q 024713 243 FFKMLTTSAD 252 (263)
Q Consensus 243 ~f~v~Ats~D 252 (263)
+|+++|++.|
T Consensus 141 g~~vlA~s~~ 150 (511)
T PRK00074 141 GFKVIASTEN 150 (511)
T ss_pred CcEEEEEeCC
Confidence 9999999954
No 34
>PRK13566 anthranilate synthase; Provisional
Probab=99.70 E-value=1.9e-16 Score=159.84 Aligned_cols=140 Identities=18% Similarity=0.330 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
+|. .++.+++++.|+++++++++.+.+.++ ..++|||||+||+.. +..+ ....+++++++++ +||||||+
T Consensus 537 sf~-~~l~~~Lr~~G~~v~vv~~~~~~~~~~--~~~~DgVVLsgGpgs-p~d~-~~~~lI~~a~~~~-----iPILGICl 606 (720)
T PRK13566 537 SFV-HTLANYFRQTGAEVTTVRYGFAEEMLD--RVNPDLVVLSPGPGR-PSDF-DCKATIDAALARN-----LPIFGVCL 606 (720)
T ss_pred chH-HHHHHHHHHCCCEEEEEECCCChhHhh--hcCCCEEEECCCCCC-hhhC-CcHHHHHHHHHCC-----CcEEEEeh
Confidence 443 468899999999999999887655443 247999999999873 3221 2358899998888 99999999
Q ss_pred hhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCC
Q 024713 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (263)
Q Consensus 164 G~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~ 243 (263)
|||+|+.++||++..+ ..+.++.+.++..+. .+.||+++|+++ .++++|++.+.. ..|+++
T Consensus 607 G~QlLa~alGG~V~~~-~~~~~G~~~~V~v~~----~~~Lf~~lp~~~--------~v~~~Hs~~v~~------~~Lp~~ 667 (720)
T PRK13566 607 GLQAIVEAFGGELGQL-AYPMHGKPSRIRVRG----PGRLFSGLPEEF--------TVGRYHSLFADP------ETLPDE 667 (720)
T ss_pred hHHHHHHHcCCEEEEC-CCCccCCceEEEECC----CCchhhcCCCCC--------EEEEecceeEee------ccCCCc
Confidence 9999999999985422 223344456665542 457888887553 689999997742 347889
Q ss_pred cEEEEEEcc
Q 024713 244 FKMLTTSAD 252 (263)
Q Consensus 244 f~v~Ats~D 252 (263)
|+++|++.|
T Consensus 668 ~~vlA~s~d 676 (720)
T PRK13566 668 LLVTAETED 676 (720)
T ss_pred eEEEEEeCC
Confidence 999999954
No 35
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.70 E-value=1.6e-16 Score=141.71 Aligned_cols=140 Identities=16% Similarity=0.259 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCe---EEEEecCCChhhHHHhcccCCEEEECCCCCC--C-----hhhHHHH----HHHHHHHHHhCCCC
Q 024713 88 ASYVKFVESAGAR---VIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D-----GLYYAIV----EKVFKKILEKNDAG 153 (263)
Q Consensus 88 ~s~v~~le~~G~~---~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~-----~~~~~~~----~~li~~a~~~~d~g 153 (263)
..|.+++++.|.. +..+....... ....++.+||||++||+.. + ..|.... ..+++.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~--- 93 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPL-PDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARD--- 93 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCC-CCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcC---
Confidence 4577788888865 44444333211 1113567999999999852 1 2232222 24566666777
Q ss_pred CcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCC
Q 024713 154 DHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPET 233 (263)
Q Consensus 154 ~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~ 233 (263)
+||||||+|||+|+.++||++. .....+.+..++.++.... .+++|.++|..+ .++++|++.|
T Consensus 94 --~PvLGIC~G~Qlla~a~GG~V~--~~~g~e~G~~~v~l~~~g~-~~~l~~~~~~~~--------~~~~~H~d~V---- 156 (242)
T PRK07567 94 --FPFLGACYGVGTLGHHQGGVVD--RTYGEPVGAVTVSLTDAGR-ADPLLAGLPDTF--------TAFVGHKEAV---- 156 (242)
T ss_pred --CCEEEEchhHHHHHHHcCCEEe--cCCCCcCccEEEEECCccC-CChhhcCCCCce--------EEEeehhhhh----
Confidence 9999999999999999999853 2233456677787765433 567888777543 5678999987
Q ss_pred ccccccCCCCcEEEEEEcc
Q 024713 234 LRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 234 ~~~~~~L~~~f~v~Ats~D 252 (263)
..||++++++|++.+
T Consensus 157 ----~~lp~~~~vlA~s~~ 171 (242)
T PRK07567 157 ----SALPPGAVLLATSPT 171 (242)
T ss_pred ----hhCCCCCEEEEeCCC
Confidence 458899999999843
No 36
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.70 E-value=1.5e-16 Score=146.22 Aligned_cols=135 Identities=17% Similarity=0.366 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+..+.++.|-+.|+++.++|++.+.+++.+. ++|||+|+-||. +|.-.......++..++.. +|++|||+|+
T Consensus 189 vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~~~~~i~~ik~l~~~~-----iPifGICLGH 260 (368)
T COG0505 189 VKRNILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAPLDYAIETIKELLGTK-----IPIFGICLGH 260 (368)
T ss_pred ccHHHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhHHHHHHHHHHHHhccC-----CCeEEEcHHH
Confidence 4567888999999999999999988876543 799999999998 5665555567888888877 8999999999
Q ss_pred HHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcE
Q 024713 166 ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFK 245 (263)
Q Consensus 166 QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~ 245 (263)
|||+.++|+++..+ .|.+++.++|+.-. . ..++ .++-+||.|+|+++. +.+.++
T Consensus 261 QllalA~Ga~T~Km-kFGHrG~NhPV~dl---~-tgrv---------------~ITSQNHGyaVd~~s------~~~~~~ 314 (368)
T COG0505 261 QLLALALGAKTYKM-KFGHRGANHPVKDL---D-TGRV---------------YITSQNHGYAVDEDS------LVETLK 314 (368)
T ss_pred HHHHHhcCCceeec-ccCCCCCCcCcccc---c-CCeE---------------EEEecCCceecChhh------cCCCce
Confidence 99999999986544 57788888887421 1 2233 257789999998874 333336
Q ss_pred EEEEEccCC
Q 024713 246 MLTTSADED 254 (263)
Q Consensus 246 v~Ats~D~~ 254 (263)
++-++.+++
T Consensus 315 vth~nlnDg 323 (368)
T COG0505 315 VTHVNLNDG 323 (368)
T ss_pred eEEEeCCCC
Confidence 777776643
No 37
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.68 E-value=3.4e-16 Score=148.26 Aligned_cols=131 Identities=18% Similarity=0.333 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
..+++++|++.|++++++|++.+.+++.. .++|||||+|||. +|.......+.+++++ .+ +||||||+|||
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~~~~ei~~--~~pDGIiLSnGPG-DP~~~~~~ie~ik~l~-~~-----iPIlGICLGhQ 321 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTWPASEALK--MKPDGVLFSNGPG-DPSAVPYAVETVKELL-GK-----VPVFGICMGHQ 321 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHhh--cCCCEEEEcCCCC-ChhHhhHHHHHHHHHH-hC-----CCEEEEcHHHH
Confidence 45788999999999999999887665543 3689999999987 4443333345556554 35 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEE
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v 246 (263)
+|+.++||++..+ .+..++.++|+.... ..++ ..+.+||+|+|.++. |++.+++
T Consensus 322 lLa~AlGGkv~K~-~~Gh~G~n~pV~~~~----~~~v---------------~itsqnHg~aVd~~s------Lp~~~~v 375 (415)
T PLN02771 322 LLGQALGGKTFKM-KFGHHGGNHPVRNNR----TGRV---------------EISAQNHNYAVDPAS------LPEGVEV 375 (415)
T ss_pred HHHHhcCCeEEEC-CCCcccceEEEEECC----CCCE---------------EEEecCHHHhhcccc------CCCceEE
Confidence 9999999985432 455666667764321 1122 146789999996544 6678999
Q ss_pred EEEEcc
Q 024713 247 LTTSAD 252 (263)
Q Consensus 247 ~Ats~D 252 (263)
++++.+
T Consensus 376 t~~nln 381 (415)
T PLN02771 376 THVNLN 381 (415)
T ss_pred EEEeCC
Confidence 998754
No 38
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.67 E-value=1.1e-15 Score=154.28 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=106.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
+....|.|+-+- +++. .++.++|++.|+++.++++....+.++ ..++|||||+||++. +...
T Consensus 514 ~~~~~IlVID~g-------------ds~~-~~l~~~L~~~G~~v~vv~~~~~~~~~~--~~~~DgLILsgGPGs-p~d~- 575 (717)
T TIGR01815 514 GEGRRILLVDHE-------------DSFV-HTLANYLRQTGASVTTLRHSHAEAAFD--ERRPDLVVLSPGPGR-PADF- 575 (717)
T ss_pred CCCCEEEEEECC-------------ChhH-HHHHHHHHHCCCeEEEEECCCChhhhh--hcCCCEEEEcCCCCC-chhc-
Confidence 445677777422 3454 478899999999999888765433222 246999999999873 2111
Q ss_pred HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCC
Q 024713 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLST 217 (263)
Q Consensus 138 ~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~ 217 (263)
...++++++++.+ +||||||+|||+|+.++||++..+ ..+.++.+.++..+ . .+++|.++|..
T Consensus 576 ~~~~~I~~~~~~~-----iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~---~-~~~Lf~~lp~~------- 638 (717)
T TIGR01815 576 DVAGTIDAALARG-----LPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVL---G-PDALFAGLPER------- 638 (717)
T ss_pred ccHHHHHHHHHCC-----CCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEEC---C-CChhhhcCCCC-------
Confidence 1246788888888 999999999999999999985422 22233434555433 2 45788887754
Q ss_pred CceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 218 DCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 218 ~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
..+|++|+|++.+ ..|+++++++|++.|
T Consensus 639 -~~v~~~HS~~~~~------~~LP~~~~vlA~s~d 666 (717)
T TIGR01815 639 -LTVGRYHSLFARR------DRLPAELTVTAESAD 666 (717)
T ss_pred -CEEEEECCCCccc------ccCCCCeEEEEEeCC
Confidence 3689999998743 347888999999844
No 39
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.66 E-value=5.4e-16 Score=137.74 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=98.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH---HHhcccCCEEEECCCCCCChhhHH
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL---FEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l---~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
++||+++..... .+.+.+.+. ++..+..+.+.++.++..+.+.... ++.++.+||||++||+.. +.. .
T Consensus 1 ~~i~lvg~~~~~------~day~s~~~-~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~-~~~-~ 71 (235)
T cd01746 1 VRIALVGKYVEL------PDAYLSVLE-ALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGI-RGV-E 71 (235)
T ss_pred CEEEEEECCcCC------HHHHHHHHH-HHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCC-cch-h
Confidence 367777755321 122333333 3555555566777766554332111 245788999999999874 222 2
Q ss_pred HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccccc----CCCcceeeE-Ee------------------
Q 024713 138 IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN----AADQASTLQ-FM------------------ 194 (263)
Q Consensus 138 ~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~----~~~~~~pl~-~~------------------ 194 (263)
....+++++++.+ +|+||||+|||+|+.++||++..+.... .+...+|+. ..
T Consensus 72 ~~~~~i~~~~~~~-----~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h 146 (235)
T cd01746 72 GKILAIKYARENN-----IPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAY 146 (235)
T ss_pred hHHHHHHHHHHCC-----ceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCce
Confidence 2236788888888 9999999999999999998743221110 011112221 00
Q ss_pred -ecCCCCCcccccCChhhhhhcCCCc-eeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 195 -ENTSIEGTVFQRFPPKLIKKLSTDC-LVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 195 -~~~~~~s~Lf~~lp~~~~~~l~~~~-~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
......+.|. +.++.+. .+.++|||+|.++.++. -++++|+++|++.|
T Consensus 147 ~v~i~~~s~l~--------~~~g~~~~~~n~~H~~~v~~~~~~~--~~~~~l~v~a~~~d 196 (235)
T cd01746 147 PVILKPGTLAH--------KYYGKDEVEERHRHRYEVNPEYVDE--LEEAGLRFSGTDPD 196 (235)
T ss_pred EEEECCCChHH--------HHhCCCEEEEecCcccccCHHHHHH--HhhCCeEEEEEeCC
Confidence 0001122222 2334433 45678999998877642 23789999999974
No 40
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.65 E-value=1.3e-15 Score=133.10 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH----HHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV----EKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~----~~li~~a~~~~d~g~~~PILGICl 163 (263)
.+++++++.+|+++++++. .++ ++.+|+||+||+++.++.+.... .+.++.+++.+ +|+||||+
T Consensus 15 ~sl~~al~~~g~~v~vv~~---~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~-----~pvlGICl 82 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINS---ESE----LAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEG-----NPFIGICL 82 (210)
T ss_pred HHHHHHHHHcCCcEEEEcC---HHH----hhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHHcC-----CCEEEECH
Confidence 4688899999999988753 222 45789999999887544332221 13344445666 99999999
Q ss_pred hhHHHHHHHcCc-cccccc-------cc-------CCCcceeeEEeecCCC--CCcccccCChhhhhhcCCCceeEEEec
Q 024713 164 GFELLTMIISKD-KNILES-------FN-------AADQASTLQFMENTSI--EGTVFQRFPPKLIKKLSTDCLVMQNHH 226 (263)
Q Consensus 164 G~QlL~~~~GG~-~~~l~~-------~~-------~~~~~~pl~~~~~~~~--~s~Lf~~lp~~~~~~l~~~~~~~~~Hs 226 (263)
|||+|+...++. ...+.- +. .+.++.++.++..... ++.||+++|+. ..+|++|+
T Consensus 83 G~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~--------~~v~~~HS 154 (210)
T CHL00188 83 GLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN--------PWAYFVHS 154 (210)
T ss_pred HHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC--------CEEEEeCc
Confidence 999999875442 222211 11 1123444443321110 14577776654 47899999
Q ss_pred ceecCC
Q 024713 227 YGISPE 232 (263)
Q Consensus 227 ~~V~p~ 232 (263)
|.+.|.
T Consensus 155 ~~v~p~ 160 (210)
T CHL00188 155 YGVMPK 160 (210)
T ss_pred cEecCC
Confidence 988543
No 41
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.64 E-value=1.8e-15 Score=142.63 Aligned_cols=130 Identities=20% Similarity=0.325 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
.+++++|+++|++++++|++.+.+++.. .++|||||+|||. +|.......+.++++++.+ +||||||+|||+
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg-~p~~~~~~i~~i~~~~~~~-----~PilGIClGhQl 275 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPG-DPSAIHYGIKTVKKLLKYN-----IPIFGICMGHQI 275 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCC-ChhHHHHHHHHHHHHHhCC-----CCEEEEcHHHHH
Confidence 3588999999999999999887666543 2689999999987 3443333335667776667 999999999999
Q ss_pred HHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEE
Q 024713 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (263)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~ 247 (263)
|+.++||++..+ .+...+..+|+.. ..++ ..+.++|+|++.++.+.. ..|+++
T Consensus 276 La~a~Gg~v~k~-~~Gh~g~n~pv~~------~~~v---------------~itsq~H~~~v~~~sv~~-----~~~~vt 328 (382)
T CHL00197 276 LSLALEAKTFKL-KFGHRGLNHPSGL------NQQV---------------EITSQNHGFAVNLESLAK-----NKFYIT 328 (382)
T ss_pred HHHHhCCEEecc-CCCCCCCCEecCC------CCce---------------EEeecchheEeeccccCC-----CCcEEE
Confidence 999999985432 2333333343321 1111 245678999997655421 368899
Q ss_pred EEEcc
Q 024713 248 TTSAD 252 (263)
Q Consensus 248 Ats~D 252 (263)
+++.+
T Consensus 329 ~~~~n 333 (382)
T CHL00197 329 HFNLN 333 (382)
T ss_pred EEECC
Confidence 88754
No 42
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.64 E-value=1.2e-15 Score=150.03 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=97.1
Q ss_pred CchhhhHHHHHHHHHHcCCe-EEEE-ecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 81 TNASYIAASYVKFVESAGAR-VIPL-IYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~-~v~i-~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.++||.. ++++.|++.|.. +.++ +++.+.+.+.. ..+|||||+|||.. |.......++++++ +.+ +||
T Consensus 7 n~dsft~-nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~-p~~~~~~~~li~~~-~~~-----~Pv 76 (534)
T PRK14607 7 NYDSFTY-NIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGR-PEEAGISVEVIRHF-SGK-----VPI 76 (534)
T ss_pred CchhHHH-HHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCC-hhhCCccHHHHHHh-hcC-----CCE
Confidence 5678886 699999999986 4444 44445554432 25899999999983 32222233566664 556 999
Q ss_pred EeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccc
Q 024713 159 YAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNL 238 (263)
Q Consensus 159 LGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~ 238 (263)
||||+|||+|+.++||++... ....++...++.. . .+.+|+++|+. ..++++|+|++.+ .
T Consensus 77 LGIClG~QlLa~a~Gg~V~~~-~~~~~G~~~~v~~----~-~~~lf~~~~~~--------~~v~~~Hs~~v~~------~ 136 (534)
T PRK14607 77 LGVCLGHQAIGYAFGGKIVHA-KRILHGKTSPIDH----N-GKGLFRGIPNP--------TVATRYHSLVVEE------A 136 (534)
T ss_pred EEEcHHHHHHHHHcCCeEecC-CccccCCceeEEE----C-CCcchhcCCCC--------cEEeeccchheec------c
Confidence 999999999999999984322 1223344344432 1 45688887754 3578999999842 3
Q ss_pred cCCCCcEEEEEEcc
Q 024713 239 DLSRFFKMLTTSAD 252 (263)
Q Consensus 239 ~L~~~f~v~Ats~D 252 (263)
.|+++|+++|++.|
T Consensus 137 ~lp~~~~vlA~s~d 150 (534)
T PRK14607 137 SLPECLEVTAKSDD 150 (534)
T ss_pred cCCCCeEEEEEcCC
Confidence 47889999999844
No 43
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.63 E-value=3.5e-15 Score=129.27 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=87.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH-----HHHHHHHHHHHhCCCCCcceEEecc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA-----IVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~-----~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.|..++|++.|+++++++. .++ ++++|+|||||++.....+.. ..+.+.+++++.+ +||||||
T Consensus 13 ~~v~~~l~~~g~~~~~~~~---~~~----l~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~-----~pvlGiC 80 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKN---PKD----LQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQK-----KPILGIC 80 (201)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----HcCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCC-----CcEEEEC
Confidence 4678899999998877643 233 467999999999985333221 1235666666777 9999999
Q ss_pred chhHHHHHH--HcCccccccccc--------------CCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEec
Q 024713 163 LGFELLTMI--ISKDKNILESFN--------------AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHH 226 (263)
Q Consensus 163 lG~QlL~~~--~GG~~~~l~~~~--------------~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs 226 (263)
+|||+|+.. .||....+..++ .+.++.+++.. . ++++|+++|++ ..+|++|+
T Consensus 81 ~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~---~-~~~l~~~l~~~--------~~~~~vHS 148 (201)
T PRK13152 81 LGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEIL---K-QSPLYQGIPEK--------SDFYFVHS 148 (201)
T ss_pred HhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEEC---C-CChhhhCCCCC--------CeEEEEcc
Confidence 999999997 344322221111 12233334322 2 56788877643 35799999
Q ss_pred ceecCCCccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 227 YGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 227 ~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
|.+.... ..+.+++. +|..++++
T Consensus 149 ~~v~~~~----------~~v~a~~~--~g~~~~~a 171 (201)
T PRK13152 149 FYVKCKD----------EFVSAKAQ--YGHKFVAS 171 (201)
T ss_pred cEeecCC----------CcEEEEEC--CCCEEEEE
Confidence 9884321 24777773 35455543
No 44
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.63 E-value=2.2e-15 Score=129.59 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=92.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-hhhHH-
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYA- 137 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-~~~~~- 137 (263)
++.|+|+...++ ..++.++++.+|++++.++. .+ .++.+||||+|||+... .....
T Consensus 1 ~m~~~i~~~~g~---------------~~~~~~~l~~~g~~~~~~~~---~~----~l~~~dgiii~GG~~~~~~~~~~~ 58 (189)
T PRK13525 1 MMKIGVLALQGA---------------VREHLAALEALGAEAVEVRR---PE----DLDEIDGLILPGGESTTMGKLLRD 58 (189)
T ss_pred CCEEEEEEcccC---------------HHHHHHHHHHCCCEEEEeCC---hh----HhccCCEEEECCCChHHHHHHHHh
Confidence 467999987754 12455779999999988753 22 26689999999997521 11111
Q ss_pred -HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc-ccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhc
Q 024713 138 -IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD-KNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKL 215 (263)
Q Consensus 138 -~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~-~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l 215 (263)
...++++.+.+++ +||||||.|+|+|+..+||. ...+.-++.+....+..+.......+.++.++++
T Consensus 59 ~~~~~~i~~~~~~g-----~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~~~------ 127 (189)
T PRK13525 59 FGLLEPLREFIASG-----LPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSFEAELDIKGLGE------ 127 (189)
T ss_pred ccHHHHHHHHHHCC-----CeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeEEecccccCCCC------
Confidence 1236788888878 99999999999999999884 1111111100000000000000002345555443
Q ss_pred CCCceeEEEecceecCCCccccccCCCCcEEEEEE
Q 024713 216 STDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTS 250 (263)
Q Consensus 216 ~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats 250 (263)
...+|++|++.| ..||++++++|++
T Consensus 128 --~~~~~~~H~d~v--------~~lp~~~~vlA~~ 152 (189)
T PRK13525 128 --PFPAVFIRAPYI--------EEVGPGVEVLATV 152 (189)
T ss_pred --CeEEEEEeCcee--------eccCCCcEEEEEc
Confidence 346789999887 5688999999998
No 45
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.63 E-value=5.2e-15 Score=138.44 Aligned_cols=131 Identities=19% Similarity=0.352 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
..+++++|++.|+.++++|++.+.+++.. .++|||||+||++ +|.......++++++++ + +|+||||+|||
T Consensus 178 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPg-dp~~~~~~~~~i~~~~~-~-----~PvlGIClG~Q 248 (354)
T PRK12838 178 KKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPG-DPKELQPYLPEIKKLIS-S-----YPILGICLGHQ 248 (354)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCC-ChHHhHHHHHHHHHHhc-C-----CCEEEECHHHH
Confidence 46789999999999999999876665543 3699999999997 34322222355565543 4 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC-CCcE
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS-RFFK 245 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~-~~f~ 245 (263)
+|+.++||++..+ .+..++..+|+.... .+++| .+.++|+|+|.++. ++ ..++
T Consensus 249 lLa~a~Gg~v~kl-~~gh~G~~hpV~~~~----~~~~~---------------~ts~~H~~aV~~~s------l~~~~l~ 302 (354)
T PRK12838 249 LIALALGADTEKL-PFGHRGANHPVIDLT----TGRVW---------------MTSQNHGYVVDEDS------LDGTPLS 302 (354)
T ss_pred HHHHHhCCEEecC-CCCccCCceEEEECC----CCeEE---------------EeccchheEecccc------cCCCCcE
Confidence 9999999985422 334556666765321 22222 34578999996543 33 3478
Q ss_pred EEEEEcc
Q 024713 246 MLTTSAD 252 (263)
Q Consensus 246 v~Ats~D 252 (263)
+++++.+
T Consensus 303 v~a~~~~ 309 (354)
T PRK12838 303 VRFFNVN 309 (354)
T ss_pred EEEEECC
Confidence 8888643
No 46
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.62 E-value=3.6e-15 Score=130.14 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH-----HHHHHHHHHHhCCCCCcceEEecc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI-----VEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~-----~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+++++|++.|+++ .+.+..++++ ++++|+|||||++.....+... .+.+++.+.+.+ +|+||||
T Consensus 15 ~s~~~al~~~g~~~-~v~~~~~~~~----l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~PvlGiC 84 (209)
T PRK13146 15 RSAAKALERAGAGA-DVVVTADPDA----VAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAG-----RPFLGIC 84 (209)
T ss_pred HHHHHHHHHcCCCc-cEEEECCHHH----hcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCC-----CcEEEEC
Confidence 57889999999954 2222334444 5789999999987642221111 235566555566 9999999
Q ss_pred chhHHHHHH------------HcCcccccccc-----cCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEe
Q 024713 163 LGFELLTMI------------ISKDKNILESF-----NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNH 225 (263)
Q Consensus 163 lG~QlL~~~------------~GG~~~~l~~~-----~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~H 225 (263)
+|||+|+.. ++|++...... ..+.++.++... . ++++|+++|+. ..+|++|
T Consensus 85 ~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~---~-~~~lf~~~~~~--------~~v~~~H 152 (209)
T PRK13146 85 VGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQT---R-DHPLFAGIPDG--------ARFYFVH 152 (209)
T ss_pred HHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeC---C-CChhccCCCCC--------CEEEEEe
Confidence 999999997 34432211000 012223333221 2 56788887754 3689999
Q ss_pred cceecCCCccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 226 HYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 226 s~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
++.+.+.. ...++|++ + ++..+.+.
T Consensus 153 s~~v~~~~---------~~~~la~s-~-~~~~~~a~ 177 (209)
T PRK13146 153 SYYAQPAN---------PADVVAWT-D-YGGPFTAA 177 (209)
T ss_pred EEEEEcCC---------CCcEEEEE-c-CCCEEEEE
Confidence 99985322 23588877 3 34455443
No 47
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.62 E-value=4.9e-15 Score=131.53 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=96.1
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--Ch---hhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG---LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~---~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
++.+++++.|..+.+++...... ....+..+|+||++||+.. +. .+.....++++.+++.+ +|+||||+
T Consensus 18 ~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~-----~PvlGIC~ 91 (234)
T PRK07053 18 SFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAG-----LPTLGICL 91 (234)
T ss_pred HHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCC-----CCEEEECc
Confidence 46678999999888887643211 1112567999999999852 21 24444558888888888 99999999
Q ss_pred hhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCC
Q 024713 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (263)
Q Consensus 164 G~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~ 243 (263)
|+|+|+.++||++.. ....+.+..++.+++... .++++ ++++ ...++++|++.+ .||++
T Consensus 92 G~Qlla~alGg~V~~--~~~~e~G~~~i~~t~~g~-~~pl~-~~~~--------~~~~~~~H~d~~---------~lP~g 150 (234)
T PRK07053 92 GAQLIARALGARVYP--GGQKEIGWAPLTLTDAGR-ASPLR-HLGA--------GTPVLHWHGDTF---------DLPEG 150 (234)
T ss_pred cHHHHHHHcCCcEec--CCCCeEeEEEEEEecccc-CChhh-cCCC--------cceEEEEeCCEE---------ecCCC
Confidence 999999999998532 223456677777765433 44443 3442 346788998765 38889
Q ss_pred cEEEEEEcc
Q 024713 244 FKMLTTSAD 252 (263)
Q Consensus 244 f~v~Ats~D 252 (263)
.+++|++.+
T Consensus 151 a~~La~s~~ 159 (234)
T PRK07053 151 ATLLASTPA 159 (234)
T ss_pred CEEEEcCCC
Confidence 999999854
No 48
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.62 E-value=1.5e-14 Score=128.79 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC---ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~---~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.+.+++++.|..+.++...... .+.+.++++||+|++||+.. ...|.....++++.+++.+ +|+||||+|+
T Consensus 23 ~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~-----~PvLGIC~G~ 96 (239)
T PRK06490 23 RVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKEN-----KPFLGICLGA 96 (239)
T ss_pred HHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCC-----CCEEEECHhH
Confidence 4678999999988877653221 12223678999999999862 2234444457888888888 9999999999
Q ss_pred HHHHHHHcCccccccccc-CCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCc
Q 024713 166 ELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (263)
Q Consensus 166 QlL~~~~GG~~~~l~~~~-~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f 244 (263)
|+|+.++||++... ..+ .+.++.++.++. .++++..++ ..+|++|++.+ .||+++
T Consensus 97 Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~----~~~~~~~~~----------~~~~~~H~d~~---------~lP~~~ 152 (239)
T PRK06490 97 QMLARHLGARVAPH-PDGRVEIGYYPLRPTE----AGRALMHWP----------EMVYHWHREGF---------DLPAGA 152 (239)
T ss_pred HHHHHHcCCEeecC-CCCCCccceEEeEECC----CcccccCCC----------CEEEEECCccc---------cCCCCC
Confidence 99999999985421 111 244555665543 233444333 24788898852 488889
Q ss_pred EEEEEEcc
Q 024713 245 KMLTTSAD 252 (263)
Q Consensus 245 ~v~Ats~D 252 (263)
.++|++.+
T Consensus 153 ~~LA~s~~ 160 (239)
T PRK06490 153 ELLATGDD 160 (239)
T ss_pred EEEEeCCC
Confidence 99999843
No 49
>PRK05665 amidotransferase; Provisional
Probab=99.61 E-value=5.2e-15 Score=131.85 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=90.0
Q ss_pred HHHHHHHcCCe--EEEEecCCChhhHHHhcccCCEEEECCCCCC---ChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 90 YVKFVESAGAR--VIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 90 ~v~~le~~G~~--~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~---~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
+.+++...+.. +.+..... ..+...++++||+|++||+.. ...|.....++++.+++++ +|+||||+|
T Consensus 28 ~~~ll~~~~~~~~~~~~~~~~--~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~-----~PilGIC~G 100 (240)
T PRK05665 28 FEQLFARQPIAAEFVVYNVVQ--GDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERG-----DKLLGVCFG 100 (240)
T ss_pred HHHHHHhCCCCceEEEEeccC--CCCCCCcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcC-----CCEEEEeHH
Confidence 33466666643 33332221 112223668999999999863 2345555678899888888 999999999
Q ss_pred hHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCc
Q 024713 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (263)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f 244 (263)
+|+|+.++||++.. .....+.+..++.++. ..++|..+++.+ .++.+|++.| ..||+++
T Consensus 101 hQlla~AlGG~V~~-~~~G~e~G~~~~~~~~----~~~~~~~~~~~~--------~~~~~H~D~V--------~~LP~ga 159 (240)
T PRK05665 101 HQLLALLLGGKAER-ASQGWGVGIHRYQLAA----HAPWMSPAVTEL--------TLLISHQDQV--------TALPEGA 159 (240)
T ss_pred HHHHHHHhCCEEEe-CCCCcccceEEEEecC----CCccccCCCCce--------EEEEEcCCee--------eeCCCCc
Confidence 99999999998532 2222333445555432 345777766543 5678899876 5699999
Q ss_pred EEEEEEc
Q 024713 245 KMLTTSA 251 (263)
Q Consensus 245 ~v~Ats~ 251 (263)
.++|++.
T Consensus 160 ~~La~s~ 166 (240)
T PRK05665 160 TVIASSD 166 (240)
T ss_pred EEEEeCC
Confidence 9999983
No 50
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.60 E-value=9.8e-15 Score=129.62 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=97.4
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC------ChhhH--HHHHHHHHHHHHhCCCCCcceEEec
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK------DGLYY--AIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~------~~~~~--~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
|..++++.|..+.+...... +.+...++.+||||++||+.. ...|. ....++++.+++.+ +|||||
T Consensus 17 ~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~-----~PvlGI 90 (235)
T PRK08250 17 YLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAG-----KAVIGV 90 (235)
T ss_pred HHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcC-----CCEEEE
Confidence 55678889988877654432 223223567999999999862 11222 23357888888888 999999
Q ss_pred cchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC
Q 024713 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (263)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~ 241 (263)
|+|+|+|+.++||++.. .. ..+.+..++.++.... .+++|.++|+.+ .++++|++.+ .||
T Consensus 91 C~G~Qlla~alGg~V~~-~~-~~e~G~~~v~lt~~g~-~d~l~~~~~~~~--------~v~~~H~d~~---------~lP 150 (235)
T PRK08250 91 CLGAQLIGEALGAKYEH-SP-EKEIGYFPITLTEAGL-KDPLLSHFGSTL--------TVGHWHNDMP---------GLT 150 (235)
T ss_pred ChhHHHHHHHhCceecc-CC-CCceeEEEEEEccccc-cCchhhcCCCCc--------EEEEEeccee---------cCC
Confidence 99999999999998531 12 2466777888776544 677898887653 4778898742 489
Q ss_pred CCcEEEEEEc
Q 024713 242 RFFKMLTTSA 251 (263)
Q Consensus 242 ~~f~v~Ats~ 251 (263)
++..++|++.
T Consensus 151 ~~a~~LA~s~ 160 (235)
T PRK08250 151 DQAKVLATSE 160 (235)
T ss_pred CCCEEEECCC
Confidence 9999999993
No 51
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.60 E-value=1.2e-14 Score=148.91 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=101.6
Q ss_pred CCchhhhHHHHHHHHHHc-CCeEEEEecCC-ChhhHHHh---cccCCEEEECCCCCCChhhHHHH---HHHHHHHHHhCC
Q 024713 80 ATNASYIAASYVKFVESA-GARVIPLIYNE-PEDVLFEK---LELVNGVLYTGGWAKDGLYYAIV---EKVFKKILEKND 151 (263)
Q Consensus 80 ~~~~s~i~~s~v~~le~~-G~~~v~i~~~~-~~~~l~~~---l~~~dGlilpGG~~~~~~~~~~~---~~li~~a~~~~d 151 (263)
+.++||.. ++++.|++. |..+++++.++ +.+.+... +..+|+|||+|||. +|...... .+++... .+
T Consensus 88 DnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG-~P~~~~d~Gi~~~~i~~~--~~- 162 (918)
T PLN02889 88 DNYDSYTY-NIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG-SPTCPADIGICLRLLLEC--RD- 162 (918)
T ss_pred eCCCchHH-HHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC-CccchHHHHHHHHHHHHh--CC-
Confidence 46789987 589999998 99998888764 34443321 34689999999998 34222222 2334322 35
Q ss_pred CCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecC
Q 024713 152 AGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISP 231 (263)
Q Consensus 152 ~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p 231 (263)
+||||||||||+|+.++||++.... ...++....+... .+.||+++|... .+...+..|||..|.+
T Consensus 163 ----iPILGICLGhQ~i~~~~Gg~V~~~~-~~~HG~~s~I~h~-----~~~lF~glp~~~----~~~f~v~RYHSL~v~~ 228 (918)
T PLN02889 163 ----IPILGVCLGHQALGYVHGARIVHAP-EPVHGRLSEIEHN-----GCRLFDDIPSGR----NSGFKVVRYHSLVIDA 228 (918)
T ss_pred ----CcEEEEcHHHHHHHHhcCceEEeCC-CceeeeeeeEeec-----CchhhcCCCcCC----CCCceEEeCCCccccc
Confidence 9999999999999999999854322 2344544445331 457999988531 1223688999999854
Q ss_pred CCccccccCCCCcEEEEEEccC
Q 024713 232 ETLRKNLDLSRFFKMLTTSADE 253 (263)
Q Consensus 232 ~~~~~~~~L~~~f~v~Ats~D~ 253 (263)
. .|++.++++|++.|.
T Consensus 229 ~------~lP~~L~~~A~t~~~ 244 (918)
T PLN02889 229 E------SLPKELVPIAWTSSS 244 (918)
T ss_pred C------CCCCceEEEEEECCC
Confidence 3 377789999988663
No 52
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.59 E-value=1.3e-14 Score=125.43 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH--H--HHHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA--I--VEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~--~--~~~li~~a~~~~d~g~~~PILGICl 163 (263)
.++++++++.|++++++. +.++ ++++|+||+|||+.....+.. . ..+.++.+.+.+ +||||||+
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~PvlGiC~ 80 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKK-----QPVLGICL 80 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCC-----CCEEEECH
Confidence 467889999999988763 2333 567999999998763222211 1 134555555667 99999999
Q ss_pred hhHHHHHHH-----------cCcccccccc---cCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEeccee
Q 024713 164 GFELLTMII-----------SKDKNILESF---NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGI 229 (263)
Q Consensus 164 G~QlL~~~~-----------GG~~~~l~~~---~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V 229 (263)
|+|+|+.+. ++++.....- ..+.++.++... . +++||+++|++ ..+|++|++.+
T Consensus 81 G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~---~-~~~lf~~l~~~--------~~~~~~Hs~~v 148 (199)
T PRK13181 81 GMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL---K-ESPLFKGIEEG--------SYFYFVHSYYV 148 (199)
T ss_pred hHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccC---C-CChhHcCCCCC--------CEEEEeCeeEe
Confidence 999999983 3332110000 012222222221 2 56788877654 46789999987
Q ss_pred cCCCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 230 SPETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 230 ~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
.+.. .+.++|++. +|..|++++
T Consensus 149 ~~~~---------~~~~lA~s~--~~~~~~~~~ 170 (199)
T PRK13181 149 PCED---------PEDVLATTE--YGVPFCSAV 170 (199)
T ss_pred ccCC---------cccEEEEEc--CCCEEEEEE
Confidence 4422 135788883 377777654
No 53
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.59 E-value=7.7e-15 Score=126.53 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHH-HHHHHHHH-hCCCCCcceEEeccchh
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVE-KVFKKILE-KNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~-~li~~a~~-~~d~g~~~PILGIClG~ 165 (263)
.|.+++|+++|++++++. +.++ ++++|+|||||++.....+....+ .+.+...+ .+ +|+||||+||
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~----l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~~~g-----~PvlGIClGm 80 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKI----IDQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTD-----KKMIGICLGM 80 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHH----hccCCEEEECCCCCHHHHHHHHHHCCcHHHHHHhCC-----CeEEEECHHH
Confidence 578899999999988874 2333 567999999999885444432211 23333322 34 9999999999
Q ss_pred HHHHHHH-cCcccccccccCCCccee--eEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCC
Q 024713 166 ELLTMII-SKDKNILESFNAADQAST--LQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (263)
Q Consensus 166 QlL~~~~-GG~~~~l~~~~~~~~~~p--l~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~ 242 (263)
|+|+... .|+...|.-++.+..+.+ +.+ ++.. |+.+.... .+. +..+||.|+|++.. . +
T Consensus 81 QlL~~~~~eg~~~GLgll~~~V~rf~~~~~v-ph~G-Wn~~~~~~--~l~-----~~~~yFVhSy~v~~---~------~ 142 (192)
T PRK13142 81 QLMYEHSDEGDASGLGFIPGNISRIQTEYPV-PHLG-WNNLVSKH--PML-----NQDVYFVHSYQAPM---S------E 142 (192)
T ss_pred HHHhhhcccCCcCccCceeEEEEECCCCCCC-Cccc-ccccCCCC--ccc-----ccEEEEECCCeECC---C------C
Confidence 9999975 234344433322111110 100 1112 33332111 111 14689999999821 1 1
Q ss_pred CcEEEEEEccCCCCEEEEEe
Q 024713 243 FFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 243 ~f~v~Ats~D~~g~~fvs~v 262 (263)
.+.+++ .+|..|+++|
T Consensus 143 --~v~~~~--~yg~~~~~~v 158 (192)
T PRK13142 143 --NVIAYA--QYGADIPAIV 158 (192)
T ss_pred --CEEEEE--ECCCeEEEEE
Confidence 366777 3577888876
No 54
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.58 E-value=1.8e-14 Score=124.33 Aligned_cols=143 Identities=18% Similarity=0.176 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhh--HH--HHHHHHHHHHHhCCCCCcceE
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YA--IVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~--~~--~~~~li~~a~~~~d~g~~~PI 158 (263)
..|+. +.+++|+++|+.+++++. .++ ++++|+||+|||+..+... .. ...++++.+.+++ +||
T Consensus 8 ~~~~~-~~~~~l~~~g~~v~v~~~---~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pi 74 (198)
T cd01748 8 MGNLR-SVANALERLGAEVIITSD---PEE----ILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASG-----KPF 74 (198)
T ss_pred CChHH-HHHHHHHHCCCeEEEEcC---hHH----hccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCC-----CcE
Confidence 34553 578899999999988763 222 5679999999876532221 11 1236777777777 999
Q ss_pred EeccchhHHHHHH------------HcCcccccccc----cCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeE
Q 024713 159 YAHCLGFELLTMI------------ISKDKNILESF----NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVM 222 (263)
Q Consensus 159 LGIClG~QlL~~~------------~GG~~~~l~~~----~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~ 222 (263)
||||+|||+|+.+ ++|++...... ..+.++.++..+ . ++++|+++|.. ..++
T Consensus 75 lGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~---~-~~~lf~~l~~~--------~~v~ 142 (198)
T cd01748 75 LGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEIT---K-ESPLFKGIPDG--------SYFY 142 (198)
T ss_pred EEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEEC---C-CChhhhCCCCC--------CeEE
Confidence 9999999999997 33332110000 012233333322 2 56678777643 4689
Q ss_pred EEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 223 QNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 223 ~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
++|++.+.+ ++.+.++|++. ++..|.+.
T Consensus 143 ~~Hs~~v~~---------~~~~~~la~s~--~~~~~~~~ 170 (198)
T cd01748 143 FVHSYYAPP---------DDPDYILATTD--YGGKFPAA 170 (198)
T ss_pred EEeEEEEec---------CCcceEEEEec--CCCeEEEE
Confidence 999998843 22356888873 34465543
No 55
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.58 E-value=3.7e-14 Score=124.00 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH----HHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV----EKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~----~~li~~a~~~~d~g~~~PILGICl 163 (263)
.|.+++++..+.+++.+ .+.++ ++.+|+||+||+++....+.... ...++.+.+++ +|+||||+
T Consensus 13 ~s~~~al~~~~~~~~~~---~~~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~-----~pilGiC~ 80 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFT---SDPET----IENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESG-----KPLFGICI 80 (210)
T ss_pred HHHHHHHHHcCCeEEEE---CCHHH----hccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHcC-----CCEEEECH
Confidence 57889999999877765 23343 56899999999997654443322 24455555667 99999999
Q ss_pred hhHHHHHHHc--C------ccccccc-------cc------CCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeE
Q 024713 164 GFELLTMIIS--K------DKNILES-------FN------AADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVM 222 (263)
Q Consensus 164 G~QlL~~~~G--G------~~~~l~~-------~~------~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~ 222 (263)
|||+|+...+ + +...|.- ++ .|.++.++.++. .. .+++|+++|+. ..+|
T Consensus 81 G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~-~~~lf~~l~~~--------~~v~ 150 (210)
T PRK14004 81 GFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRR-KD-KSKLLKGIGDQ--------SFFY 150 (210)
T ss_pred hHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceecc-CC-CCccccCCCCC--------CEEE
Confidence 9999999754 1 1222221 11 112222232221 12 45688877643 4789
Q ss_pred EEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 223 QNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 223 ~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
++|||...+ ++.+.+++++ +++|..|.+.+
T Consensus 151 ~~HS~~~~~---------~~~l~~sa~~-~~~g~~~~a~~ 180 (210)
T PRK14004 151 FIHSYRPTG---------AEGNAITGLC-DYYQEKFPAVV 180 (210)
T ss_pred EeceeecCC---------CCcceEEEee-eECCEEEEEEE
Confidence 999995422 1223466666 33377676654
No 56
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.57 E-value=5.2e-14 Score=121.79 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=94.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh-hhHH--H
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-LYYA--I 138 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~-~~~~--~ 138 (263)
.|||+.-++. ...|.. ++.++++..|..+.++.... .+. ++++|+||||||+.... .... .
T Consensus 2 ~i~vl~~~~~----------~~e~~~-~~~~~l~~~g~~~~~~~~~~-~~~----l~~~d~iii~GG~~~~~~~~~~~~~ 65 (200)
T PRK13527 2 KIGVLALQGD----------VEEHID-ALKRALDELGIDGEVVEVRR-PGD----LPDCDALIIPGGESTTIGRLMKREG 65 (200)
T ss_pred EEEEEEECCc----------cHHHHH-HHHHHHHhcCCCeEEEEeCC-hHH----hccCCEEEECCCcHHHHHHHHhhcc
Confidence 4788876643 234543 57789999998877776643 232 56799999999976211 1111 1
Q ss_pred HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCC-------CCCcccccCChhh
Q 024713 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTS-------IEGTVFQRFPPKL 211 (263)
Q Consensus 139 ~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~-------~~s~Lf~~lp~~~ 211 (263)
..+.++.+.+.+ +|+||||+|+|+|+.++||.. +......+-+..+..++.... ..+.+|.++|..
T Consensus 66 ~~~~i~~~~~~~-----~pilGIC~G~Qll~~~~gg~~-v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~- 138 (200)
T PRK13527 66 ILDEIKEKIEEG-----LPILGTCAGLILLAKEVGDDR-VTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGP- 138 (200)
T ss_pred HHHHHHHHHHCC-----CeEEEECHHHHHHHhhhcCCc-cCCCCCceeeeeEEEEeeccccCccccEEEeEeccccCCc-
Confidence 246666666777 999999999999999998842 111111112233333321100 012345444433
Q ss_pred hhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 212 IKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 212 ~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
..++++|++.+ ..+++.++++|++.|
T Consensus 139 -------~~~~~~H~~~v--------~~lp~~~~~la~~~~ 164 (200)
T PRK13527 139 -------FHAVFIRAPAI--------TKVGGDVEVLAKLDD 164 (200)
T ss_pred -------ceEEEEccccc--------cccCCCeEEEEEECC
Confidence 35788999987 358889999998843
No 57
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.54 E-value=2.6e-14 Score=140.22 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=92.1
Q ss_pred CCchhhhHHHHHHHHHHcCCeEEEEecCCChh-hHHHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcce
Q 024713 80 ATNASYIAASYVKFVESAGARVIPLIYNEPED-VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 80 ~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~-~l~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
+.++||.. ++++.|++.|+.+.+++.+.+.+ .++++. .++|+|||+|||.. |.......+++++. ..+ +|
T Consensus 8 Dn~dsft~-nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~-p~d~~~~~~i~~~~-~~~-----iP 79 (531)
T PRK09522 8 DNIDSFTY-NLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV-PSEAGCMPELLTRL-RGK-----LP 79 (531)
T ss_pred eCCChHHH-HHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCC-hhhCCCCHHHHHHH-hcC-----CC
Confidence 35678886 58999999999998887653311 122211 24789999999983 32112223555543 346 99
Q ss_pred EEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccc
Q 024713 158 LYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKN 237 (263)
Q Consensus 158 ILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~ 237 (263)
|||||+|||+|+.++||++.... ...++....+. . . ...+|.++|.. ..++.+|++.+
T Consensus 80 ILGIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~--~--~-~~~lf~~~~~~--------~~v~~~Hs~~v-------- 137 (531)
T PRK09522 80 IIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIE--H--D-GQAMFAGLTNP--------LPVARYHSLVG-------- 137 (531)
T ss_pred EEEEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEe--e--c-CCccccCCCCC--------cEEEEehheec--------
Confidence 99999999999999999853211 11112112221 1 1 34688877654 36889999987
Q ss_pred ccCCCCcEEEEEE
Q 024713 238 LDLSRFFKMLTTS 250 (263)
Q Consensus 238 ~~L~~~f~v~Ats 250 (263)
..+|++++++|++
T Consensus 138 ~~lP~~l~vlA~s 150 (531)
T PRK09522 138 SNIPAGLTINAHF 150 (531)
T ss_pred ccCCCCcEEEEec
Confidence 3588899999975
No 58
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.52 E-value=7.3e-14 Score=121.18 Aligned_cols=142 Identities=19% Similarity=0.151 Sum_probs=88.9
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH----HHHHHHHHHHHhCCCCCcceE
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~----~~~~li~~a~~~~d~g~~~PI 158 (263)
..++ .+++++|++.|+.+.++.. .++ ++.+|+||+|||+..+..... ...++++.+.+.+ +|+
T Consensus 9 ~~~~-~~i~~~l~~~G~~v~~~~~---~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pv 75 (205)
T PRK13141 9 MGNL-RSVEKALERLGAEAVITSD---PEE----ILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASG-----KPL 75 (205)
T ss_pred CchH-HHHHHHHHHCCCeEEEECC---HHH----hccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCC-----CcE
Confidence 3445 4688999999999888642 232 567999999998653222211 1235667777777 999
Q ss_pred EeccchhHHHHHHH------------cCcccccccc-----cCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCcee
Q 024713 159 YAHCLGFELLTMII------------SKDKNILESF-----NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLV 221 (263)
Q Consensus 159 LGIClG~QlL~~~~------------GG~~~~l~~~-----~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~ 221 (263)
||||+|+|+|+... +|++.. .+. ..+.++.++..+ . .++||+.+|.. ..+
T Consensus 76 lGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~-~~~~~~~~~~~~g~~~i~~~---~-~~~l~~~l~~~--------~~v 142 (205)
T PRK13141 76 LGICLGMQLLFESSEEFGETEGLGLLPGRVRR-FPPEEGLKVPHMGWNQLELK---K-ESPLLKGIPDG--------AYV 142 (205)
T ss_pred EEECHHHHHhhhccccCCCCCccceEEEEEEE-cCCCCCCcccEecCccceeC---C-CChhhhCCCCC--------CEE
Confidence 99999999999973 333211 010 012233333332 2 56788777643 357
Q ss_pred EEEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 222 MQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 222 ~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
+.+|++.+. +++.+.++|++ | +|.++.+.
T Consensus 143 ~~~Hs~~v~---------~~~~~~v~a~~-~-~~~~~~a~ 171 (205)
T PRK13141 143 YFVHSYYAD---------PCDEEYVAATT-D-YGVEFPAA 171 (205)
T ss_pred EEECeeEec---------cCCcCeEEEEE-e-CCcEEEEE
Confidence 889999873 34457788887 3 34555543
No 59
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.49 E-value=4e-13 Score=116.39 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh--hhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG--LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~--~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.++.++++++|+++++++ +.++ ++.+||||+|||+.... .+.....+.++++++++ +|+||||+|+
T Consensus 14 ~~~~~~l~~~G~~~~~~~---~~~~----~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~-----~PilgIC~G~ 81 (200)
T PRK13143 14 RSVSKALERAGAEVVITS---DPEE----ILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSG-----KPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----HccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC-----CCEEEECHHH
Confidence 468899999999988774 2222 56899999999754211 12222347788888888 9999999999
Q ss_pred HHHHHHH------------cCccccccc-c-cCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecC
Q 024713 166 ELLTMII------------SKDKNILES-F-NAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISP 231 (263)
Q Consensus 166 QlL~~~~------------GG~~~~l~~-~-~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p 231 (263)
|+|+.+. ||++..... . ..+.++.++..+ . .+++|++++. ..++++|++.+.+
T Consensus 82 q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~---~-~~~l~~~l~~---------~~~~~~Hs~~~~~ 148 (200)
T PRK13143 82 QLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV---K-DCPLFEGIDG---------EYVYFVHSYYAYP 148 (200)
T ss_pred HHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc---C-CChhhccCCC---------cEEEEEeeeeeCC
Confidence 9999852 333210000 0 011123333322 2 5667766532 2467899998743
Q ss_pred CCccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 232 ETLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 232 ~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
++...++|++. ++..+++.
T Consensus 149 ---------~~~~~~la~~~--~~~~~~~~ 167 (200)
T PRK13143 149 ---------DDEDYVVATTD--YGIEFPAA 167 (200)
T ss_pred ---------CCcceEEEEEc--CCCEEEEE
Confidence 23467888883 35555543
No 60
>PRK06186 hypothetical protein; Validated
Probab=99.49 E-value=2.1e-13 Score=120.27 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=91.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC----CeEEEEecCCChhhHH--HhcccCCEEEECCCCCCChhh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG----ARVIPLIYNEPEDVLF--EKLELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G----~~~v~i~~~~~~~~l~--~~l~~~dGlilpGG~~~~~~~ 135 (263)
.||+.+... ...++|. |+.++|+.+| .++.+...+.+ ++. ..|+.+|||++|||....+ .
T Consensus 3 ~IalVGKY~---------~~~daY~--Sv~eal~ha~~~~~~~~~i~wi~s~--~l~~~~~l~~~dgilvpgGfg~rg-~ 68 (229)
T PRK06186 3 RIALVGDYN---------PDVTAHQ--AIPLALDLAAAVLGLPVDYEWLPTP--EITDPEDLAGFDGIWCVPGSPYRN-D 68 (229)
T ss_pred EEEEEECCc---------CCcHHHH--HHHHHHHHHHHhcCCeeEEEEEchh--hcCChhhHhhCCeeEeCCCCCccc-H
Confidence 577776542 2346675 4777777764 55655555432 221 2478899999999965321 1
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccc-----ccCCCcceeeE-Ee----------ecCCC
Q 024713 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILES-----FNAADQASTLQ-FM----------ENTSI 199 (263)
Q Consensus 136 ~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~-----~~~~~~~~pl~-~~----------~~~~~ 199 (263)
+-.-..+++|.+.+ +|+||||+|||++...++.....+.. ++.+. ..|+- .. .....
T Consensus 69 -~Gki~ai~~Are~~-----iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~-~~pvi~~~~~~~~~~~h~v~l~~ 141 (229)
T PRK06186 69 -DGALTAIRFARENG-----IPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEG-DRPVIAPLSCSLVEKTGDIRLRP 141 (229)
T ss_pred -hHHHHHHHHHHHcC-----CCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCC-CCCEEEECccccccCceEEEECC
Confidence 11237899999999 99999999999877765443222221 11111 11111 00 00011
Q ss_pred CCcccccCChhhhhhcCCCcee-EEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 200 EGTVFQRFPPKLIKKLSTDCLV-MQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 200 ~s~Lf~~lp~~~~~~l~~~~~~-~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
.+.++ +.++.+... -+.|+|.|.+..-+... +++|+++|++.|
T Consensus 142 ~S~l~--------~iyg~~~i~erhrHryeVNs~h~q~i~--~~GL~vsa~s~D 185 (229)
T PRK06186 142 GSLIA--------RAYGTLEIEEGYHCRYGVNPEFVAALE--SGDLRVTGWDED 185 (229)
T ss_pred CCHHH--------HHhCCCeeeeeccccEEECHHHHHHHh--cCCeEEEEEcCC
Confidence 22222 223333332 23477888776666543 889999999965
No 61
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.48 E-value=1.9e-13 Score=132.69 Aligned_cols=172 Identities=23% Similarity=0.278 Sum_probs=101.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEecCCChhhHH----HhcccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPEDVLF----EKLELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~i~~~~~~~~l~----~~l~~~dGlilpGG~~ 130 (263)
.++.||+.+.... ..++|. |+.++|+.+|+ ++.+.+.+. +++. +.++++|||+||||+.
T Consensus 288 ~~v~IalVGKY~~---------~~daY~--SI~eAL~~ag~~~~~~V~~~~i~s--e~i~~~~~~~L~~~dGIiLpGG~G 354 (525)
T TIGR00337 288 HEVTIGIVGKYVE---------LKDSYL--SVIEALKHAGAKLDTKVNIKWIDS--EDLEEEGAEFLKGVDGILVPGGFG 354 (525)
T ss_pred CCcEEEEEeCCcC---------CHHHHH--HHHHHHHhCccccCCEEEEEEecH--HHhhhhhhhhhcCCCEEEeCCCCC
Confidence 4689999986532 446774 79999999986 445444432 2221 2367899999999986
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccC----CCcceeeE-EeecCC----CCC
Q 024713 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNA----ADQASTLQ-FMENTS----IEG 201 (263)
Q Consensus 131 ~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~----~~~~~pl~-~~~~~~----~~s 201 (263)
. +.. .....+++++.+.+ +|+||||+|||+|+.++|+++..+..... .+..+|+. +.+... ...
T Consensus 355 ~-~~~-~g~i~ai~~a~e~~-----iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GG 427 (525)
T TIGR00337 355 E-RGV-EGKILAIKYARENN-----IPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGG 427 (525)
T ss_pred C-hhh-cChHHHHHHHHHcC-----CCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCc
Confidence 3 221 11225788888888 99999999999999999887433221111 01223321 111000 000
Q ss_pred cc------cccCCh-hhhhhcCCCc-eeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 202 TV------FQRFPP-KLIKKLSTDC-LVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 202 ~L------f~~lp~-~~~~~l~~~~-~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
.| -.-.+. .+.+.+..+. ..-+.|+|.|.+...+.... ++|+++|++.|
T Consensus 428 TmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~D 484 (525)
T TIGR00337 428 TMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPD 484 (525)
T ss_pred eeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECC
Confidence 00 000111 1222333332 33567889998776654332 78999999976
No 62
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.46 E-value=4.8e-13 Score=115.55 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhh--HHH--HHHHHHHHHHhCCCCCcceEEeccch
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAI--VEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~--~~~--~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
++.++++..|+.+.+++.+ +. ++.+|+||+||++.....+ ... .+.+++.+++.+ +||||||+|
T Consensus 13 ~l~~~l~~~g~~v~v~~~~---~~----l~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~~~-----~pvlGiC~G 80 (196)
T TIGR01855 13 SVKRALKRVGAEPVVVKDS---KE----AELADKLILPGVGAFGAAMARLRENGLDLFVELVVRLG-----KPVLGICLG 80 (196)
T ss_pred HHHHHHHHCCCcEEEEcCH---HH----hccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHhCC-----CCEEEECHH
Confidence 5778999999998888732 22 5679999999965421111 111 234446667777 999999999
Q ss_pred hHHHHHHH--cCcccccccccCC------CcceeeEEe--ecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCc
Q 024713 165 FELLTMII--SKDKNILESFNAA------DQASTLQFM--ENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETL 234 (263)
Q Consensus 165 ~QlL~~~~--GG~~~~l~~~~~~------~~~~pl~~~--~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~ 234 (263)
||+|+.+. |+++..+.-++.. .....+.|. .... .++||+++|+ ...+|++|++.+++..
T Consensus 81 ~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~-~~~l~~~l~~--------~~~v~~~Hs~~v~~~~- 150 (196)
T TIGR01855 81 MQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVK-ESPLLNGIDE--------GAYFYFVHSYYAVCEE- 150 (196)
T ss_pred HHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCC-CChHHhCCCC--------CCEEEEECeeEecCCC-
Confidence 99999983 2222222111100 001112221 1112 4567776654 3468999999986432
Q ss_pred cccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 235 RKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 235 ~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
. .+++.+ | +|..|.+.
T Consensus 151 --------~-~~~a~~-~-~g~~~~~~ 166 (196)
T TIGR01855 151 --------E-AVLAYA-D-YGEKFPAA 166 (196)
T ss_pred --------C-cEEEEE-c-CCcEEEEE
Confidence 1 255555 3 46666554
No 63
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.46 E-value=7.8e-13 Score=118.11 Aligned_cols=83 Identities=17% Similarity=0.330 Sum_probs=59.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH--
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI-- 138 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~-- 138 (263)
..|||++-+++. .+..++|+++|++++.+.. .++ +..+||||||||.. ..+...
T Consensus 2 m~igVLa~qG~~---------------~e~~~aL~~lG~ev~~v~~---~~~----L~~~DgLILPGGfs--~~~~~L~~ 57 (248)
T PLN02832 2 MAIGVLALQGSF---------------NEHIAALRRLGVEAVEVRK---PEQ----LEGVSGLIIPGGES--TTMAKLAE 57 (248)
T ss_pred cEEEEEeCCCch---------------HHHHHHHHHCCCcEEEeCC---HHH----hccCCEEEeCCCHH--HHHHHHHh
Confidence 369999988752 3567899999999887743 333 66899999999754 233221
Q ss_pred ---HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 139 ---VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 139 ---~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
..+.++.+.+++ +|+||||+|||+|+...
T Consensus 58 ~~gl~~~I~~~v~~g-----~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 58 RHNLFPALREFVKSG-----KPVWGTCAGLIFLAERA 89 (248)
T ss_pred hcchHHHHHHHHHcC-----CCEEEEChhHHHHHHHh
Confidence 123444444566 99999999999999974
No 64
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.45 E-value=1.5e-12 Score=132.39 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=83.5
Q ss_pred CchhhhHHHHHHHHHHc-C--CeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcce
Q 024713 81 TNASYIAASYVKFVESA-G--ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~-G--~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
.++||.. ++++.|++. | +.+++++++....++...+..+|||||+|||+. |... ....+++++++.+ ....+|
T Consensus 13 ~~DSft~-nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~-p~~~-~~~~i~~~i~~~~-~~~~iP 88 (742)
T TIGR01823 13 SYDSFTY-NVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGN-PNNA-QDMGIISELWELA-NLDEVP 88 (742)
T ss_pred CCcchHH-HHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCC-ccch-hhhHHHHHHHHhc-ccCCCc
Confidence 4567775 588888886 3 566778876543333223567999999999983 3211 1123445554432 112399
Q ss_pred EEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCC
Q 024713 158 LYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPE 232 (263)
Q Consensus 158 ILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~ 232 (263)
|||||+|||+|+.++||++... ....++....+.. . ...+|.+++. ..++++|++.+.+.
T Consensus 89 vLGIClG~QlLa~a~GG~v~~~-~~~~hG~~~~v~~----~-~~~lf~gl~~---------~~v~~~Hs~~v~~~ 148 (742)
T TIGR01823 89 VLGICLGFQSLCLAQGADISRL-PTPKHGQVYEMHT----N-DAAIFCGLFS---------VKSTRYHSLYANPE 148 (742)
T ss_pred EEEEchhhHHHHhhcCCEEEEC-CCCCcCeEEEEEE----C-CccccCCCCC---------CceeEEEEEEccCC
Confidence 9999999999999999985322 1223333333332 1 4558888763 25788999988543
No 65
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.41 E-value=4e-12 Score=112.33 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=95.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChh-----hH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL-----YY 136 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~-----~~ 136 (263)
.|+|+.-++..+ ..+++++++++|+.++++++... .++++|+||||||...... ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~~~~~al~~~G~~~~~i~~~~~------~l~~~d~lilpGG~~~~d~~~~~~~~ 62 (227)
T TIGR01737 2 KVAVIRFPGTNC-------------DRDTVYALRLLGVDAEIVWYEDG------SLPDYDGVVLPGGFSYGDYLRAGAIA 62 (227)
T ss_pred eEEEEeCCCcCc-------------HHHHHHHHHHCCCeEEEEecCCC------CCCCCCEEEECCCCcccccccccchh
Confidence 588888886532 23456899999999998876532 1568999999999753111 11
Q ss_pred --HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH--HcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhh
Q 024713 137 --AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLI 212 (263)
Q Consensus 137 --~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~--~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~ 212 (263)
....++++.+.+.+ +||+|||.|+|+|+.+ ++|.. ......+.....+.+..... .+.+|+++++...
T Consensus 63 ~~~~~~~~l~~~~~~g-----~pvlgIC~G~QlLa~~GlL~G~l--~~n~~~~~~~~~~~~~v~~~-~~~~~~~~~~g~~ 134 (227)
T TIGR01737 63 AASPIMQEVREFAEKG-----VPVLGICNGFQILVEAGLLPGAL--LPNDSLRFICRWVYLRVENA-DTIFTKNYKKGEV 134 (227)
T ss_pred cchHHHHHHHHHHHcC-----CEEEEECHHHHHHHHcCCCCCce--eecCCCceEEEeEEEEECCC-CChhhccCCCCCE
Confidence 11235666677777 9999999999999995 77752 11111222222233332212 4667777764211
Q ss_pred hhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCC
Q 024713 213 KKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDN 255 (263)
Q Consensus 213 ~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g 255 (263)
-++ +....-|+|.++++.+ .+|.+..+|+.+-.|.+|
T Consensus 135 ~~~---pi~H~eG~y~~~~~~l---~~l~~~~~i~~~y~d~~g 171 (227)
T TIGR01737 135 IRI---PIAHGEGRYYADDETL---ARLESNDQVVFRYCDEDG 171 (227)
T ss_pred EEE---EeEcCCcCeEcCHHHH---HHHHHCCcEEEEEECCCC
Confidence 000 1111224555544432 457788888887777443
No 66
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.41 E-value=8.1e-13 Score=112.95 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=61.8
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChh-h--HHHH
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL-Y--YAIV 139 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~-~--~~~~ 139 (263)
|||++.+++.. +..+++++.|++++.+... ++ ++.+||||+|||+..... . ....
T Consensus 1 igvl~~qg~~~---------------e~~~~l~~~g~~v~~v~~~---~~----l~~~dgiii~Gg~~~~~~~~~~~~~~ 58 (183)
T cd01749 1 IGVLALQGDFR---------------EHIRALERLGVEVIEVRTP---ED----LEGIDGLIIPGGESTTIGKLLRRTGL 58 (183)
T ss_pred CEEEEecCCcH---------------HHHHHHHHCCCeEEEECCH---HH----hccCCEEEECCchHHHHHHHHHhCCH
Confidence 78888776421 2337999999998888542 22 678999999999862111 0 0112
Q ss_pred HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc
Q 024713 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 140 ~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
.+.++.+.+++ +|+||||.|+|+|+..+++.
T Consensus 59 ~~~i~~~~~~g-----~PvlGiC~G~qlL~~~~~~~ 89 (183)
T cd01749 59 LDPLREFIRAG-----KPVFGTCAGLILLAKEVEDQ 89 (183)
T ss_pred HHHHHHHHHcC-----CeEEEECHHHHHHHHHhccc
Confidence 35677777777 99999999999999999873
No 67
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.36 E-value=6.8e-12 Score=122.10 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=69.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEecCCCh-h--hHHHhcccCCEEEECCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPE-D--VLFEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~i~~~~~~-~--~l~~~l~~~dGlilpGG~~~ 131 (263)
.+-.||+.+.... ..++|. |+.++|+.+|+ ++.+.+.+... + ...+.++.+||||||||...
T Consensus 287 ~~v~IalVGKY~~---------l~DaY~--Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~ 355 (533)
T PRK05380 287 GEVTIALVGKYVE---------LPDAYK--SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGE 355 (533)
T ss_pred CceEEEEEeCccC---------CcHHHH--HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCc
Confidence 4567999886532 335564 57778877764 45555554321 1 13346888999999999763
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcc
Q 024713 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (263)
Q Consensus 132 ~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~ 176 (263)
.. ......+++++.+.+ +|+||||+|||+|+.++||++
T Consensus 356 ~~--~~g~i~~i~~a~e~~-----iPiLGIClGmQll~va~Ggnv 393 (533)
T PRK05380 356 RG--IEGKILAIRYARENN-----IPFLGICLGMQLAVIEFARNV 393 (533)
T ss_pred cc--cccHHHHHHHHHHCC-----CcEEEEchHHHHHHHHhcccc
Confidence 21 112236888888888 999999999999999999984
No 68
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.36 E-value=9.8e-12 Score=122.12 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH--HH--HHHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AI--VEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~--~~--~~~li~~a~~~~d~g~~~PILGICl 163 (263)
.+..+++++.|+++.+++. ++. ++.+|+||||||++....+. .. ..+.++.+++.+ +|+||||+
T Consensus 20 ~sl~~al~~~G~~v~~v~~---~~~----l~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g-----~PvLGIC~ 87 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT---PED----ILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQND-----RPFLGICL 87 (538)
T ss_pred HHHHHHHHHCCCeEEEECC---hhh----hccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcC-----CCEEEECH
Confidence 4678899999999877642 232 57899999999887533321 11 235666667777 99999999
Q ss_pred hhHHHHHHH
Q 024713 164 GFELLTMII 172 (263)
Q Consensus 164 G~QlL~~~~ 172 (263)
|||+|+...
T Consensus 88 G~QlLa~~~ 96 (538)
T PLN02617 88 GLQLLFESS 96 (538)
T ss_pred HHHHHhhhh
Confidence 999999873
No 69
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.32 E-value=1.7e-11 Score=105.11 Aligned_cols=84 Identities=17% Similarity=0.376 Sum_probs=60.1
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-hhhHH--HH
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYA--IV 139 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-~~~~~--~~ 139 (263)
|||+.-+++ ..+..++|+++|++++.+.. +++ ++.+|+|++|||.... ..... ..
T Consensus 2 igvl~~qg~---------------~~e~~~~l~~~g~~~~~v~~---~~~----l~~~d~liipGG~~~~~~~l~~~~~l 59 (184)
T TIGR03800 2 IGVLALQGA---------------VREHARALEALGVEGVEVKR---PEQ----LDEIDGLIIPGGESTTLSRLLDKYGM 59 (184)
T ss_pred EEEEEccCC---------------HHHHHHHHHHCCCEEEEECC---hHH----hccCCEEEECCCCHHHHHHHHHhccH
Confidence 888887764 13456899999998888743 232 5689999999996521 01111 12
Q ss_pred HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHc
Q 024713 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (263)
Q Consensus 140 ~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~G 173 (263)
...++.+.+.+ +|+||||.|+|+|+..+.
T Consensus 60 ~~~i~~~~~~g-----~pilGIC~G~qlL~~~~~ 88 (184)
T TIGR03800 60 FEPLRNFILSG-----LPVFGTCAGLIMLAKEII 88 (184)
T ss_pred HHHHHHHHHcC-----CcEEEECHHHHHHHhhhc
Confidence 35566677777 999999999999999873
No 70
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.26 E-value=3.2e-11 Score=121.57 Aligned_cols=131 Identities=22% Similarity=0.411 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
..+.+++|-..|+++.++|++.+.+. +.+|||+|++||. +|......-.-+++.++.+ +||+|||+|+|
T Consensus 183 K~N~IRcL~~RGa~vtVvPw~~~i~~-----~~yDGlflSNGPG-dPe~~~~~v~~vr~lL~~~-----~PvfGIClGHQ 251 (1435)
T KOG0370|consen 183 KYNQIRCLVKRGAEVTVVPWDYPIAK-----EEYDGLFLSNGPG-DPELCPLLVQNVRELLESN-----VPVFGICLGHQ 251 (1435)
T ss_pred hHHHHHHHHHhCceEEEecCCccccc-----cccceEEEeCCCC-CchhhHHHHHHHHHHHhCC-----CCeEEEehhhH
Confidence 34578899999999999999876542 2799999999998 5665554444555666666 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEE
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v 246 (263)
+|+.+.|+++..+ .+..++++.|..-.. ..+-| ++-++|.|++.++. |+.+|+.
T Consensus 252 llA~AaGakT~Km-KyGNRGhNiP~~~~~----tGrc~---------------ITSQNHGYAVD~~t------Lp~gWk~ 305 (1435)
T KOG0370|consen 252 LLALAAGAKTYKM-KYGNRGHNIPCTCRA----TGRCF---------------ITSQNHGYAVDPAT------LPAGWKP 305 (1435)
T ss_pred HHHHhhCCceEEe-eccccCCCccceecc----CceEE---------------EEecCCceeecccc------ccCCCch
Confidence 9999999985433 466666666653221 11111 45679999997654 5678888
Q ss_pred EEEEccCC
Q 024713 247 LTTSADED 254 (263)
Q Consensus 247 ~Ats~D~~ 254 (263)
+-++.+++
T Consensus 306 lFvN~NDg 313 (1435)
T KOG0370|consen 306 LFVNANDG 313 (1435)
T ss_pred heeecccC
Confidence 88876644
No 71
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.25 E-value=8.5e-11 Score=98.04 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=104.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH-HHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFV-ESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~l-e~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~ 135 (263)
..+|+|-|- .++||..+ ++++| -+.|+.+.+.+.++ +.+++.+ .++++++++.||.. |..
T Consensus 17 ~n~piv~ID--------------NYDSFT~N-v~qYL~~e~g~~~~VyRNDeiTV~El~~--~NP~~LliSPGPG~-P~D 78 (223)
T KOG0026|consen 17 QNGPIIVID--------------NYDSFTYN-LCQYLMGELGCHFEVYRNDELTVEELKR--KNPRGLLISPGPGT-PQD 78 (223)
T ss_pred ccCCEEEEe--------------cccchhHH-HHHHhhhccCccEEEEecCcccHHHHhh--cCCCeEEecCCCCC-Ccc
Confidence 478887662 34677764 66666 56788888888764 3344543 36899999999983 332
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccccc-CCCcceeeEEeecCCCCCcccccCChhhhhh
Q 024713 136 YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AADQASTLQFMENTSIEGTVFQRFPPKLIKK 214 (263)
Q Consensus 136 ~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~-~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~ 214 (263)
.+...+.+.++ .-. +|+||||.|.|-|..++||++. ...|. .++...+++... +.+.-+|+++|..+
T Consensus 79 sGIs~~~i~~f-~~~-----iP~fGvCMGlQCi~e~fGGkv~-~a~~~i~HGK~S~i~~D~--~~~~G~f~g~~q~~--- 146 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPL-----VPLFGVCMGLQCIGEAFGGKIV-RSPFGVMHGKSSMVHYDE--KGEEGLFSGLSNPF--- 146 (223)
T ss_pred ccchHHHHHHh-CCC-----CceeeeehhhhhhhhhhCcEEe-ccCcceeeccccccccCC--ccccccccCCCCCe---
Confidence 22223444443 234 9999999999999999999954 22332 355566665432 11466899888654
Q ss_pred cCCCceeEEEecceecCCCccccccCC-CCcEEEEEEccCCCCE
Q 024713 215 LSTDCLVMQNHHYGISPETLRKNLDLS-RFFKMLTTSADEDNKC 257 (263)
Q Consensus 215 l~~~~~~~~~Hs~~V~p~~~~~~~~L~-~~f~v~Ats~D~~g~~ 257 (263)
.+-.|||.+...+. || +.++|+|.++ +|..
T Consensus 147 -----~V~RYHSLa~~~sS------lP~d~L~VTawTE--nG~i 177 (223)
T KOG0026|consen 147 -----IVGRYHSLVIEKDS------FPSDELEVTAWTE--DGLV 177 (223)
T ss_pred -----EEEeeeeeeeeccc------CCccceeeeEecc--CcEE
Confidence 57889999886544 44 6789999984 4543
No 72
>PLN02327 CTP synthase
Probab=99.24 E-value=1e-10 Score=114.16 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=96.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC----CeEEEEecCCCh---hh----------HHHhcccCCE
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG----ARVIPLIYNEPE---DV----------LFEKLELVNG 122 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G----~~~v~i~~~~~~---~~----------l~~~l~~~dG 122 (263)
.-.||+.+.... ..+.|. |+.++|+.+| .++.+.+.+.+. +. +.+.++++||
T Consensus 297 ~v~IalVGKY~~---------l~DAY~--Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DG 365 (557)
T PLN02327 297 PVRIAMVGKYTG---------LSDSYL--SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADG 365 (557)
T ss_pred ceEEEEEecccC---------CcHhHH--HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCE
Confidence 357899885432 345665 4666776654 566555544311 11 2245788999
Q ss_pred EEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccc-----ccCCCcceee-EEeec
Q 024713 123 VLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILES-----FNAADQASTL-QFMEN 196 (263)
Q Consensus 123 lilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~-----~~~~~~~~pl-~~~~~ 196 (263)
|++|||+.. +...+. ...++++.+.+ +|+||||+|||+++..++.++-.+.. ++.+ ...|+ .+.+.
T Consensus 366 IvvpGGfG~-~~~~G~-i~ai~~are~~-----iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~-t~~pvI~~m~e 437 (557)
T PLN02327 366 ILVPGGFGD-RGVEGK-ILAAKYARENK-----VPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPE-TPNPCVIFMPE 437 (557)
T ss_pred EEeCCCCCC-cccccH-HHHHHHHHHcC-----CCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCC-CCCCEEEEehh
Confidence 999999752 222121 25678888888 99999999999999999876433322 2111 12222 22111
Q ss_pred CC---CCCcc-c----ccC--Chhh-hhhcCCCc--eeEEEecceecCCCccccccC-CCCcEEEEEEcc
Q 024713 197 TS---IEGTV-F----QRF--PPKL-IKKLSTDC--LVMQNHHYGISPETLRKNLDL-SRFFKMLTTSAD 252 (263)
Q Consensus 197 ~~---~~s~L-f----~~l--p~~~-~~~l~~~~--~~~~~Hs~~V~p~~~~~~~~L-~~~f~v~Ats~D 252 (263)
.. ....| | ..+ +... .+.+.+.. ...+.|+|+|.++.. +.| ..+++++|++.|
T Consensus 438 ~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v---~~le~~gL~vsa~s~d 504 (557)
T PLN02327 438 GSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMV---PRLEKAGLSFVGKDET 504 (557)
T ss_pred cccccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHH---HHHhhcCcEEEEEcCC
Confidence 00 01122 1 011 1222 22333332 246678899977664 345 588999999966
No 73
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.4e-11 Score=112.49 Aligned_cols=157 Identities=14% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCchhhhHHHHHHHHHHc-CCeEE-EEecCCChhhHHHhccc---CCEEEECCCCCCC--hhhHHHHHHHHHHHHHhCCC
Q 024713 80 ATNASYIAASYVKFVESA-GARVI-PLIYNEPEDVLFEKLEL---VNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDA 152 (263)
Q Consensus 80 ~~~~s~i~~s~v~~le~~-G~~~v-~i~~~~~~~~l~~~l~~---~dGlilpGG~~~~--~~~~~~~~~li~~a~~~~d~ 152 (263)
+.++||..+ +++.++.. |..+| ++..+...++.-..+.+ +|.||+..||... +.+.+...+++..+ +.
T Consensus 21 D~YDSyTfN-iy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~--~~-- 95 (767)
T KOG1224|consen 21 DNYDSYTFN-IYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLEC--RD-- 95 (767)
T ss_pred ecccchhhh-HHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhc--CC--
Confidence 356788874 77788764 44333 44444333333333444 8999999998832 23333333444433 23
Q ss_pred CCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCC
Q 024713 153 GDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPE 232 (263)
Q Consensus 153 g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~ 232 (263)
+||||||+|||.|+.+.|+.+. ....+.|++-..++.. ..-+|.++|.. ......+..|||..+.+.
T Consensus 96 ---iPilGICLGfQal~l~hGA~v~-~~n~p~HGrvs~i~~~-----~~~~f~gi~sg----~~~~fK~~RYHSL~in~~ 162 (767)
T KOG1224|consen 96 ---IPILGICLGFQALGLVHGAHVV-HANEPVHGRVSGIEHD-----GNILFSGIPSG----RNSDFKVVRYHSLIINSL 162 (767)
T ss_pred ---CceeeeehhhHhHhhhccccee-cCCCcccceeeeEEec-----CcEEEccCCCC----CcccceeEEeEEEEecCC
Confidence 9999999999999999999854 2234455544444433 33455555431 112235688999988533
Q ss_pred CccccccCCCCcEEEEEEccCCCCEEEEE
Q 024713 233 TLRKNLDLSRFFKMLTTSADEDNKCKPMT 261 (263)
Q Consensus 233 ~~~~~~~L~~~f~v~Ats~D~~g~~fvs~ 261 (263)
-. +.+.+++|+.|++|..-.|.
T Consensus 163 pi-------d~l~il~t~~ddng~ilMsi 184 (767)
T KOG1224|consen 163 PI-------DLLPILWTIYDDNGHILMSI 184 (767)
T ss_pred ch-------hhhcceeEeecCCceEEEEe
Confidence 32 34568999988888655543
No 74
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.23 E-value=8.3e-12 Score=117.64 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=88.4
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
+-+.+|+.-....++|.+++...+.+ ..+.|||++|||.. .|...+..+-..+++.+ +||||||+|||+|+
T Consensus 32 I~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~S--Vya~dAP~~dp~if~~~-----vpvLGICYGmQ~i~ 102 (552)
T KOG1622|consen 32 IDRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNS--VYAEDAPSFDPAIFELG-----VPVLGICYGMQLIN 102 (552)
T ss_pred HHHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCc--cccCcCCCCChhHhccC-----CcceeehhHHHHHH
Confidence 34689999888899999887776654 47899999999961 11111111112233567 99999999999999
Q ss_pred HHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEE
Q 024713 170 MIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTT 249 (263)
Q Consensus 170 ~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~At 249 (263)
..+||.+ ......+++...+.... ...||+++...... .++-.|+..+ .+++++|++.|+
T Consensus 103 ~~~Gg~V--~~~~~RE~G~~eI~v~~----~~~lF~~~~~~~~~------~VlltHgdsl--------~~v~~g~kv~a~ 162 (552)
T KOG1622|consen 103 KLNGGTV--VKGMVREDGEDEIEVDD----SVDLFSGLHKTEFM------TVLLTHGDSL--------SKVPEGFKVVAF 162 (552)
T ss_pred HHhCCcc--ccccccCCCCceEEcCc----hhhhhhhhccccee------eeeeccccch--------hhccccceeEEe
Confidence 9999984 33333455555554321 45588766543210 2444577654 678899999999
Q ss_pred Ec
Q 024713 250 SA 251 (263)
Q Consensus 250 s~ 251 (263)
+.
T Consensus 163 s~ 164 (552)
T KOG1622|consen 163 SG 164 (552)
T ss_pred ec
Confidence 93
No 75
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.20 E-value=4.6e-11 Score=109.59 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH----HHHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~----~~~li~~a~~~~d~g~~~PILGICl 163 (263)
+|+.+++|.+|..+..+.. + .+ +.+.|.+||||.+.+.+.+... ..+-+++.++.+ +|++|||+
T Consensus 15 ~si~nal~hlg~~i~~v~~--P-~D----I~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yiesg-----kPfmgicv 82 (541)
T KOG0623|consen 15 RSIRNALRHLGFSIKDVQT--P-GD----ILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESG-----KPFMGICV 82 (541)
T ss_pred HHHHHHHHhcCceeeeccC--c-hh----hccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcC-----CCeEeehh
Confidence 5677899999998877643 2 22 5679999999999876655432 235566666888 99999999
Q ss_pred hhHHHHHH--HcCccc-------ccccccCCCccee-eEEeec-CCCCCcccccCChhhhhhcCCCceeEEEecceecCC
Q 024713 164 GFELLTMI--ISKDKN-------ILESFNAADQAST-LQFMEN-TSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPE 232 (263)
Q Consensus 164 G~QlL~~~--~GG~~~-------~l~~~~~~~~~~p-l~~~~~-~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~ 232 (263)
|.|+|..- +.+... ++.+|+...+..| +.|+.- ...++.+|...|. ..+||+|||-.+ +
T Consensus 83 GlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~---------~~~YFVHSyl~~-e 152 (541)
T KOG0623|consen 83 GLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPN---------RHVYFVHSYLNR-E 152 (541)
T ss_pred hHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCC---------ceEEEEeeeccc-c
Confidence 99999863 222222 2345655555566 467632 2225556655443 478999999443 2
Q ss_pred CccccccC-CCCcEEEEEEccCCCCEEEEEe
Q 024713 233 TLRKNLDL-SRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 233 ~~~~~~~L-~~~f~v~Ats~D~~g~~fvs~v 262 (263)
.. +.| +++|++.++. ++...||++|
T Consensus 153 k~---~~len~~wkiat~k--YG~E~Fi~ai 178 (541)
T KOG0623|consen 153 KP---KSLENKDWKIATCK--YGSESFISAI 178 (541)
T ss_pred cc---cCCCCCCceEeeec--cCcHHHHHHH
Confidence 21 233 4668876544 4448898875
No 76
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.16 E-value=1.6e-10 Score=104.17 Aligned_cols=94 Identities=15% Similarity=0.304 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC-Chh---
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGL--- 134 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~-~~~--- 134 (263)
+++.|+|+.-|+.++. .+..++++++|+.+..++.....+ ....++.+|+|+||||... +..
T Consensus 2 ~~~kvaVl~~pG~n~d-------------~e~~~Al~~aG~~v~~v~~~~~~~-~~~~l~~~DgLvipGGfs~gD~l~~g 67 (261)
T PRK01175 2 ESIRVAVLRMEGTNCE-------------DETVKAFRRLGVEPEYVHINDLAA-ERKSVSDYDCLVIPGGFSAGDYIRAG 67 (261)
T ss_pred CCCEEEEEeCCCCCCH-------------HHHHHHHHHCCCcEEEEeeccccc-cccchhhCCEEEECCCCCcccccccc
Confidence 5689999999986442 245678999999998887643211 1223678999999999642 111
Q ss_pred -----hHH-HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 135 -----YYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 135 -----~~~-~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
... ...+.++.+++++ +||||||+|+|+|+.+
T Consensus 68 ~~~~~~l~~~l~~~Ik~f~~~g-----kpVLGICnG~QlLa~~ 105 (261)
T PRK01175 68 AIFAARLKAVLRKDIEEFIDEG-----YPIIGICNGFQVLVEL 105 (261)
T ss_pred hhhHHHHHHHHHHHHHHHHHCC-----CeEEEECHHHHHHHHC
Confidence 111 1225677777777 9999999999999985
No 77
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.15 E-value=2.6e-10 Score=101.46 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=65.8
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhh-------
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY------- 135 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~------- 135 (263)
++|+.-|+.++. .++.++++++|+.+++++.....+. ...++.+|+||||||.......
T Consensus 1 v~vl~~pG~n~~-------------~~~~~al~~aG~~v~~v~~~~~~~~-~~~l~~~d~liipGG~~~~d~l~~~~~~~ 66 (238)
T cd01740 1 VAVLRFPGSNCD-------------RDMAYAFELAGFEAEDVWHNDLLAG-RKDLDDYDGVVLPGGFSYGDYLRAGAIAA 66 (238)
T ss_pred CEEEEcCCcCCH-------------HHHHHHHHHcCCCEEEEeccCCccc-cCCHhhCCEEEECCCCCcccccccccccc
Confidence 467777776442 3467789999999998887542111 1235689999999997531111
Q ss_pred HHH-HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH--HcCc
Q 024713 136 YAI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (263)
Q Consensus 136 ~~~-~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~--~GG~ 175 (263)
... ..++++.+.+++ +||||||.|+|+|+.+ ++|+
T Consensus 67 ~~~~~~~~l~~~~~~g-----~pvlGIC~G~QlL~~~gll~g~ 104 (238)
T cd01740 67 ASPLLMEEVKEFAERG-----GLVLGICNGFQILVELGLLPGA 104 (238)
T ss_pred cChhHHHHHHHHHhCC-----CeEEEECcHHHHHHHcCCCccc
Confidence 111 346777777777 9999999999999997 6665
No 78
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.11 E-value=2.4e-10 Score=98.19 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=88.4
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC---ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK---DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~---~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
++..+.+-|-.....++....-.-++.++++||++++|.... +..|......++++....+ +||+|||.|||
T Consensus 30 fvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mk-----kkvlGICFGHQ 104 (245)
T KOG3179|consen 30 FVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMK-----KKVLGICFGHQ 104 (245)
T ss_pred HHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhc-----cceEEEeccHH
Confidence 556677777555544432211001124778999999999752 3455555557888888888 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEE
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKM 246 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v 246 (263)
+++.+.||++. ..+-..+-.-..+............|..+|..+ .....|+..+ -.+|+++++
T Consensus 105 iiara~Gg~Vg-ra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l--------~IikcHqDev--------le~PE~a~l 167 (245)
T KOG3179|consen 105 IIARAKGGKVG-RAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSL--------NIIKCHQDEV--------LELPEGAEL 167 (245)
T ss_pred HHHHhhCCccc-cCCCCCcccccceEEEEecccchhhcccchhhh--------hHHhhcccce--------ecCCchhhh
Confidence 99999999842 222221111111222211121456777666544 2345688765 468999999
Q ss_pred EEEEccCC
Q 024713 247 LTTSADED 254 (263)
Q Consensus 247 ~Ats~D~~ 254 (263)
+|.|.+.+
T Consensus 168 lasSe~ce 175 (245)
T KOG3179|consen 168 LASSEKCE 175 (245)
T ss_pred hccccccc
Confidence 99996643
No 79
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.09 E-value=1.9e-09 Score=94.33 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcc-cCCEEEECCCCCCCh----
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-LVNGVLYTGGWAKDG---- 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~-~~dGlilpGG~~~~~---- 133 (263)
.||.|+|+.-|+.++. .....+++.+|++++.++.++. .+. .+|+|++|||-+...
T Consensus 1 ~~~kvaVi~fpGtN~d-------------~d~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFSyGDyLr~ 61 (231)
T COG0047 1 ARPKVAVLRFPGTNCD-------------YDMAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFSYGDYLRA 61 (231)
T ss_pred CCceEEEEEcCCcCch-------------HHHHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCCcccccCc
Confidence 4799999999987653 1244578999999999887542 134 699999999987411
Q ss_pred hhHHHH---HHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 134 LYYAIV---EKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 134 ~~~~~~---~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+.... .+-++++.+++ +|+||||.|||+|.++
T Consensus 62 Gaiaa~~~v~~~v~~~a~~g-----~~vLGICNGfQiL~e~ 97 (231)
T COG0047 62 GAIAAIAPVMDEVREFAEKG-----KPVLGICNGFQILSEA 97 (231)
T ss_pred chHHhhHHHHHHHHHHHHCC-----CeEEEEcchhHHHHHc
Confidence 111111 23333444566 9999999999999964
No 80
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.03 E-value=1.3e-09 Score=100.00 Aligned_cols=117 Identities=11% Similarity=0.164 Sum_probs=78.7
Q ss_pred ccCCEEEECCCCCC-----ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccccc-CCCcceee
Q 024713 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AADQASTL 191 (263)
Q Consensus 118 ~~~dGlilpGG~~~-----~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~-~~~~~~pl 191 (263)
+.+||+|+||.+.- +-.|..+..++++++.+.. +|+||||.|+|+++.++||... . ..+ ..-+..+.
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~-----~s~LgICwGaQa~a~algGi~k-~-~~~~K~~Gv~~~ 170 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHV-----TSTLFICWAAQAALYHLYGIPK-Y-TLPEKLSGVFEH 170 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcC-----CCEEEEcHHHHHHHHHcCCCcc-C-CCCCceeEEEEE
Confidence 47899999999952 3355566778999998877 9999999999999999999521 1 111 22222333
Q ss_pred EEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCCCE
Q 024713 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKC 257 (263)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~ 257 (263)
..+. . .++|++++++.+. +-+.|+..|..+.. .++++.+|+|.| |..|..
T Consensus 171 ~~~~--~-~~pL~~g~~d~F~--------~phSr~~~V~~~~i----~~~~~l~vLA~S-~~~gv~ 220 (302)
T PRK05368 171 RVLD--P-HHPLLRGFDDSFL--------VPHSRYTEVREEDI----RAATGLEILAES-EEAGVY 220 (302)
T ss_pred EEcC--C-CChhhcCCCCccc--------cceeehhhccHHHh----ccCCCCEEEecC-CCCCeE
Confidence 3321 2 5789999987653 34566666643332 256788899988 445543
No 81
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.01 E-value=1.8e-09 Score=92.09 Aligned_cols=82 Identities=15% Similarity=0.268 Sum_probs=56.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH--
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI-- 138 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~-- 138 (263)
..|||++-+++. ....++++++|++++.+. ++++ ++.+|+||||||... ..+...
T Consensus 3 ~~igVLalqG~~---------------~Eh~~al~~lG~~v~~v~---~~~~----l~~~D~LILPGG~~t-~~~~ll~~ 59 (179)
T PRK13526 3 QKVGVLAIQGGY---------------QKHADMFKSLGVEVKLVK---FNND----FDSIDRLVIPGGEST-TLLNLLNK 59 (179)
T ss_pred cEEEEEECCccH---------------HHHHHHHHHcCCcEEEEC---CHHH----HhCCCEEEECCChHH-HHHHHhhh
Confidence 679999988752 235678999999877764 3343 568999999998442 211111
Q ss_pred --HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 139 --VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 139 --~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+.++... ++ +|++|||.|||+|+..
T Consensus 60 ~~l~~~Ik~~~-~~-----kpilGICaG~qlL~~~ 88 (179)
T PRK13526 60 HQIFDKLYNFC-SS-----KPVFGTCAGSIILSKG 88 (179)
T ss_pred cCcHHHHHHHH-cC-----CcEEEEcHHHHHHHcc
Confidence 124444443 24 8999999999999984
No 82
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.98 E-value=6.7e-09 Score=91.36 Aligned_cols=90 Identities=22% Similarity=0.384 Sum_probs=63.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH-HcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh-----hh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG-----LY 135 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le-~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~-----~~ 135 (263)
.|+|+.-|+.++ ..+..++++ .+|+.+..+..+. . .++.+|+|+||||..... ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~d~~~a~~~~~G~~~~~v~~~~--~----~l~~~D~lvipGG~~~~d~l~~~~~ 62 (219)
T PRK03619 2 KVAVIVFPGSNC-------------DRDMARALRDLLGAEPEYVWHKE--T----DLDGVDAVVLPGGFSYGDYLRCGAI 62 (219)
T ss_pred EEEEEecCCcCh-------------HHHHHHHHHhcCCCeEEEEecCc--C----CCCCCCEEEECCCCchhhhhccchh
Confidence 588998887543 133467898 8999988776542 1 267899999999975311 11
Q ss_pred H--HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH--HcCc
Q 024713 136 Y--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKD 175 (263)
Q Consensus 136 ~--~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~--~GG~ 175 (263)
. ....++++.+.+++ +|++|||.|+|+|+.+ ++|+
T Consensus 63 ~~~~~~~~~l~~~~~~g-----~~ilgIC~G~qlLa~~GLL~g~ 101 (219)
T PRK03619 63 AAFSPIMKAVKEFAEKG-----KPVLGICNGFQILTEAGLLPGA 101 (219)
T ss_pred hhchHHHHHHHHHHHCC-----CEEEEECHHHHHHHHcCCCCCe
Confidence 1 12235666677777 9999999999999996 6665
No 83
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.81 E-value=3.8e-08 Score=94.35 Aligned_cols=170 Identities=23% Similarity=0.314 Sum_probs=93.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEecCCCh---hhHHHhccc-CCEEEECCCCCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPE---DVLFEKLEL-VNGVLYTGGWAKD 132 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~i~~~~~~---~~l~~~l~~-~dGlilpGG~~~~ 132 (263)
-.||+.+...+ -.++|+ |++++|+.+|+ ++.+.+.+... +.... +.. +|||++|||....
T Consensus 289 v~IalVGKYv~---------l~DaY~--Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~-~~~~~dgIlVPGGFG~R 356 (533)
T COG0504 289 VTIALVGKYVE---------LPDAYK--SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAE-LEKLVDGILVPGGFGYR 356 (533)
T ss_pred eEEEEEECCcC---------chhHHH--HHHHHHHhhhhhcCCceeeEEEccccccccchhh-hhhcCCEEEeCCCCCcC
Confidence 56999886542 346676 57788888764 45454444321 11111 222 9999999998742
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccc-----cccCCCcceee-EEeecCC----CCCc
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILE-----SFNAADQASTL-QFMENTS----IEGT 202 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~-----~~~~~~~~~pl-~~~~~~~----~~s~ 202 (263)
.. .-.-..+++|.+++ +|+||||+|||+....+.-++-.+. .++. ....|+ .+.+... ....
T Consensus 357 G~--eGkI~Ai~yAREn~-----iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp-~t~~pVv~l~~eq~~~~~lGGT 428 (533)
T COG0504 357 GV--EGKIAAIRYARENN-----IPFLGICLGMQLAVIEFARNVLGLEGANSTEFDP-DTKYPVVDLMPEQKDVVDLGGT 428 (533)
T ss_pred ch--HHHHHHHHHHHhcC-----CCEEEEchhHHHHHHHHHHHhcCCccCcccccCC-CCCCceEEeccccccCCcCCce
Confidence 21 11127889999998 9999999999999986533221121 1221 111222 1111100 0011
Q ss_pred ccc------cCChhhhhhcCCCcee--EEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 203 VFQ------RFPPKLIKKLSTDCLV--MQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 203 Lf~------~lp~~~~~~l~~~~~~--~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
|-- -.+..+...+-....+ -+.|+|.+.|+..+.. ...+|++.+++.|
T Consensus 429 mRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~l--e~~Gl~~sg~s~d 484 (533)
T COG0504 429 MRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQL--EKAGLVFSGTSPD 484 (533)
T ss_pred eeccceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHH--HhCCeEEEEEcCC
Confidence 110 1112233333332333 3468999987765432 3467999999977
No 84
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.79 E-value=1.5e-08 Score=87.34 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH----HHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~----~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
.++.++++..|++++.+....+ ++.+|+|+||||......+.. ...+.++.+.+++ +||||||.
T Consensus 13 ~~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g-----~pvlgiC~ 80 (194)
T cd01750 13 TDLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAG-----GPVLGICG 80 (194)
T ss_pred HHHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCC-----CcEEEECH
Confidence 4566789999999998876443 457899999999864322222 1235566666777 99999999
Q ss_pred hhHHHHHHH
Q 024713 164 GFELLTMII 172 (263)
Q Consensus 164 G~QlL~~~~ 172 (263)
|||+|+...
T Consensus 81 G~qlL~~~~ 89 (194)
T cd01750 81 GYQMLGKYI 89 (194)
T ss_pred HHHHhhhhc
Confidence 999999986
No 85
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.75 E-value=3e-08 Score=85.83 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-hhhHHH---HHHHHHHHHHhCCCCCcceE
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI---VEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-~~~~~~---~~~li~~a~~~~d~g~~~PI 158 (263)
-+|......++|+++|++++.+....+ +. +..+|+||||||.... ...... ..+.++.+.+++ +||
T Consensus 9 F~f~y~e~~~~l~~~G~~v~~~s~~~~-~~----l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-----~pi 78 (198)
T cd03130 9 FNFYYPENLELLEAAGAELVPFSPLKD-EE----LPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-----GPI 78 (198)
T ss_pred cccccHHHHHHHHHCCCEEEEECCCCC-CC----CCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-----CCE
Confidence 345556678899999999988754222 22 4459999999985311 111111 235666666777 999
Q ss_pred EeccchhHHHHHHH
Q 024713 159 YAHCLGFELLTMII 172 (263)
Q Consensus 159 LGIClG~QlL~~~~ 172 (263)
+|||.|||+|+...
T Consensus 79 lgICgG~qlL~~~~ 92 (198)
T cd03130 79 YAECGGLMYLGESL 92 (198)
T ss_pred EEEcccHHHHHHHh
Confidence 99999999999974
No 86
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.71 E-value=1.1e-07 Score=90.18 Aligned_cols=175 Identities=22% Similarity=0.325 Sum_probs=95.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEecCC----------Chh---hHHHhcccC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNE----------PED---VLFEKLELV 120 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~i~~~~----------~~~---~l~~~l~~~ 120 (263)
.....|++....- ...++|+ |++|+|+.++. ...+...+. ++. ....++..+
T Consensus 296 ~~~V~IalVGKYt---------~l~DsY~--Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~a 364 (585)
T KOG2387|consen 296 QVPVRIALVGKYT---------KLSDSYL--SVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSA 364 (585)
T ss_pred cCcEEEEEEeccc---------cchHHHH--HHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccC
Confidence 3345688887542 2346776 68899987653 333333322 111 112457789
Q ss_pred CEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccc-----ccccCCCcceeeEEee
Q 024713 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNIL-----ESFNAADQASTLQFME 195 (263)
Q Consensus 121 dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l-----~~~~~~~~~~pl~~~~ 195 (263)
|||++|||.+..+. .-.-...++|.+.+ +|.||||||||+-...+.-++-.+ ..|+.+....-+.+.+
T Consensus 365 dGilvPGGFG~RGv--eG~i~Aak~ARen~-----iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MP 437 (585)
T KOG2387|consen 365 DGILVPGGFGDRGV--EGKILAAKWARENK-----IPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMP 437 (585)
T ss_pred CeEEeCCcccccch--hHHHHHHHHHHhcC-----CCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECc
Confidence 99999999874221 01125678888888 999999999999887654321111 1222222111122222
Q ss_pred cCC-----------CCCcccccCChhhhhhcCCCcee--EEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 196 NTS-----------IEGTVFQRFPPKLIKKLSTDCLV--MQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 196 ~~~-----------~~s~Lf~~lp~~~~~~l~~~~~~--~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
..+ .....|+.-...+.+...+...+ -+-|.|.|.|+..... ...++.-++.+.|
T Consensus 438 E~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~l--e~~Gl~FvGkd~~ 505 (585)
T KOG2387|consen 438 EHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQL--EQAGLSFVGKDVT 505 (585)
T ss_pred CCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHH--HhcCcEEEeecCC
Confidence 111 02234655554444444433322 3569999988765432 2356777766633
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.62 E-value=3.8e-08 Score=88.74 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=57.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-----hh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-----GL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-----~~ 134 (263)
||.++|+.-|+.++. .....+++.+|+.++.+..+. .-.-+..++++|+|+||||.... ..
T Consensus 1 kpkV~Vl~~pGtNce-------------~e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGFS~gD~l~sg~ 66 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCE-------------RETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGFSYGDYLRSGA 66 (259)
T ss_dssp --EEEEEE-TTEEEH-------------HHHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE-GGGGTTSTTH
T ss_pred CCEEEEEECCCCCCH-------------HHHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCccCccccchHHH
Confidence 789999999987542 345678999999999887642 10011247889999999997631 11
Q ss_pred hH-HH------HHHHHHHHHHh-CCCCCcceEEeccchhHHHHHH
Q 024713 135 YY-AI------VEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 135 ~~-~~------~~~li~~a~~~-~d~g~~~PILGIClG~QlL~~~ 171 (263)
.. .. ..+-+++++++ + +|+||||.|||+|...
T Consensus 67 ~~a~~~~~~~~~~~~i~~f~~~~g-----~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 67 IAAARLLFNSPLMDAIREFLERPG-----GFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHCCSCCCHHHHHHHHHCTT------EEEEECHHHHHHCCC
T ss_pred HHHHHhhccHHHHHHHHHHHhcCC-----CeEEEEchHhHHHHHh
Confidence 11 11 13445556666 7 9999999999999985
No 88
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.61 E-value=1.4e-07 Score=80.25 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=59.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC-CeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV 139 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G-~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~ 139 (263)
+.|||++-.++ -...++.++++| +.++.+.. +++ ++.+||||||||.+. .+.+..
T Consensus 1 m~IGVLalQG~---------------v~EH~~~l~~~~~~e~~~Vk~---~~d----L~~~d~LIiPGGEST--Ti~rL~ 56 (194)
T COG0311 1 MKIGVLALQGA---------------VEEHLEALEKAGGAEVVEVKR---PED----LEGVDGLIIPGGEST--TIGRLL 56 (194)
T ss_pred CeEEEEEeccc---------------HHHHHHHHHhhcCCceEEEcC---HHH----hccCcEEEecCccHH--HHHHHH
Confidence 36999998865 234678999995 88887753 343 678999999999872 222221
Q ss_pred -----HHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 140 -----EKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 140 -----~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
.+-++...+.+ +|+||+|-||-+|+...
T Consensus 57 ~~~gl~e~l~~~~~~G-----~Pv~GTCAGlIlLakei 89 (194)
T COG0311 57 KRYGLLEPLREFIADG-----LPVFGTCAGLILLAKEI 89 (194)
T ss_pred HHcCcHHHHHHHHHcC-----CceEEechhhhhhhhhh
Confidence 23444445567 99999999999999753
No 89
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.56 E-value=1.6e-07 Score=91.31 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=46.8
Q ss_pred HHHHHHHHcCC-eEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 89 SYVKFVESAGA-RVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 89 s~v~~le~~G~-~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
|.+++++.+|. .+.++..+ ++++ +..+|+||||||........ ...+.+...+.+ +||||||.||||
T Consensus 10 sv~~al~~lg~~~~~vv~~~-~~~~----l~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~g-----~pvlGICgG~Qm 77 (476)
T PRK06278 10 GSLPCFENFGNLPTKIIDEN-NIKE----IKDLDGLIIPGGSLVESGSL--TDELKKEILNFD-----GYIIGICSGFQI 77 (476)
T ss_pred hHHHHHHHhcCCCcEEEEeC-ChHH----hccCCEEEECCCchhhcchH--HHHHHHHHHHcC-----CeEEEEcHHHHh
Confidence 45567888886 55554433 3333 67899999999853211101 223444444556 999999999999
Q ss_pred HHHHH
Q 024713 168 LTMII 172 (263)
Q Consensus 168 L~~~~ 172 (263)
|+...
T Consensus 78 Lg~~~ 82 (476)
T PRK06278 78 LSEKI 82 (476)
T ss_pred ccccc
Confidence 99863
No 90
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.42 E-value=9.4e-07 Score=93.93 Aligned_cols=96 Identities=20% Similarity=0.364 Sum_probs=66.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--------ChhhHHHhcccCCEEEECCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------PEDVLFEKLELVNGVLYTGGW 129 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--------~~~~l~~~l~~~dGlilpGG~ 129 (263)
..||.++|+.-|+.++. ....++++++|+.+..+..+. +.+.+...++.+++|++|||.
T Consensus 975 ~~kpkvaIl~~pGtNce-------------~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSE-------------YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence 46899999999987653 234567888999988777543 112222346889999999998
Q ss_pred CCCh------hhHH------HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 130 AKDG------LYYA------IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 130 ~~~~------~~~~------~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+... .+.. ...+-++++++++ .++||||.|||+|...
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d-----~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARD-----GLILGICNGFQALVKS 1090 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHhCC-----CcEEEechHHHHHHHc
Confidence 6411 2211 1224444455556 9999999999999885
No 91
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.38 E-value=7.5e-06 Score=88.07 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh----
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG---- 133 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~---- 133 (263)
.+||.++|+.-|+.++. .....+++.+|+.++.+..+.-.+. ...++.++||++|||.+...
T Consensus 1053 ~~~p~vail~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFSygD~lgs 1118 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGD-------------REMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFSYGDVLGA 1118 (1310)
T ss_pred CCCceEEEEECCCCCCH-------------HHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCCCccchhH
Confidence 46899999999987552 2344589999999888876431110 01267789999999976421
Q ss_pred -h-hHH------HHHHHHHHHH-HhCCCCCcceEEeccchhHHHH
Q 024713 134 -L-YYA------IVEKVFKKIL-EKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 134 -~-~~~------~~~~li~~a~-~~~d~g~~~PILGIClG~QlL~ 169 (263)
. |.. ...+-++.++ +.+ .++||||.|||+|.
T Consensus 1119 g~~~a~~i~~~~~~~~~~~~f~~~~d-----~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1119 GKGWAKSILFNPRLRDQFQAFFKRPD-----TFSLGVCNGCQMLS 1158 (1310)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhCCC-----ceEEEecHHHHHHH
Confidence 1 111 1123344444 444 99999999999999
No 92
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.37 E-value=4.6e-07 Score=77.20 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=66.0
Q ss_pred cccCCEEEECCCCC----C-ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceee
Q 024713 117 LELVNGVLYTGGWA----K-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (263)
Q Consensus 117 l~~~dGlilpGG~~----~-~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl 191 (263)
.+++||+|+||.+. + +-.|..+..++++++.++. +|+||||.|+|....+++|......+ ....+-.+.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v-----~stl~iCWgaqaal~~~yGi~k~~~~-~K~~Gvf~~ 133 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHV-----TSTLFSCWAAMAALYYFYGIKKHQLP-EKIFGVFPH 133 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHcCcccccCC-CceEEEEEe
Confidence 56799999999996 2 2356667789999998888 99999999999999999996321111 111111222
Q ss_pred EEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCc
Q 024713 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETL 234 (263)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~ 234 (263)
... . .++|++++++.+. +-+.|+-.|+.+..
T Consensus 134 ~~~---~-~hpL~~g~~d~F~--------~PhSR~~~v~~~~~ 164 (175)
T cd03131 134 TIL---E-PHPLLRGLDDGFD--------VPHSRYAEVDREDI 164 (175)
T ss_pred eec---C-CCccccCCCCcee--------ecCcccccCCHHHH
Confidence 221 2 5789999986542 23345446654444
No 93
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.32 E-value=4e-06 Score=73.27 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~ 136 (263)
..++.|.+...... ....|+. ++.++++++ |.+++.+.... .++..+.+.++|+|+||||.. ..+.
T Consensus 29 ~~~~~i~~IptAs~---------~~~~~~~-~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~--~~~~ 95 (212)
T cd03146 29 KARPKVLFVPTASG---------DRDEYTA-RFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGNT--FNLL 95 (212)
T ss_pred cCCCeEEEECCCCC---------CHHHHHH-HHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCchH--HHHH
Confidence 35678888776542 2345664 688999999 99888776432 223334578899999999743 1111
Q ss_pred HH-----HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 137 AI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 137 ~~-----~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.. ..++++.+.+++ +|++|||.|+|++...
T Consensus 96 ~~l~~~~l~~~l~~~~~~g-----~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 96 AQWREHGLDAILKAALERG-----VVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHcCHHHHHHHHHHCC-----CEEEEECHhHHhhCCC
Confidence 11 235666666677 9999999999999974
No 94
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.31 E-value=3.9e-06 Score=62.14 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
..+.+.++.++..+.+++..............+|+|++|||....... .....+.+++..+++ +|++|+|.|+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~-----~~i~~~c~g~ 89 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAG-----KPILGICLGA 89 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcC-----CEEEEECchh
Confidence 456788999999999888765321101224679999999998743322 122335666666666 9999999999
Q ss_pred HHH
Q 024713 166 ELL 168 (263)
Q Consensus 166 QlL 168 (263)
|++
T Consensus 90 ~~l 92 (115)
T cd01653 90 QLL 92 (115)
T ss_pred HhH
Confidence 999
No 95
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.28 E-value=1.4e-06 Score=74.58 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH------HHHHHHHHHHhCCCCCcceEEecc
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI------VEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~------~~~li~~a~~~~d~g~~~PILGIC 162 (263)
...+.|+++|++++.++. .++ ++.+||||+|||.+ ..+... .+.+-+++.+.+ +||||+|
T Consensus 10 EH~~~l~~lg~~~~~Vr~---~~d----L~~~dgLIiPGGES--Tti~~ll~~~gL~~~l~~~~~~g~-----~Pv~GTC 75 (188)
T PF01174_consen 10 EHIRMLERLGAEVVEVRT---PED----LEGLDGLIIPGGES--TTIGKLLRRYGLFEPLREFIRSGS-----KPVWGTC 75 (188)
T ss_dssp HHHHHHHHTTSEEEEE-S---GGG----GTT-SEEEE-SS-H--HHHHHHHHHTTHHHHHHHHHHTT-------EEEEET
T ss_pred HHHHHHHHcCCCeEEeCC---HHH----HccCCEEEECCCcH--HHHHHHHHHcCCHHHHHHHHHcCC-----Cceeehh
Confidence 467899999999987764 333 67899999999987 222221 123333333334 8999999
Q ss_pred chhHHHHHHH
Q 024713 163 LGFELLTMII 172 (263)
Q Consensus 163 lG~QlL~~~~ 172 (263)
-||-||+...
T Consensus 76 AGlIlLa~~v 85 (188)
T PF01174_consen 76 AGLILLAKEV 85 (188)
T ss_dssp HHHHHHEEEE
T ss_pred HHHHHhhhhh
Confidence 9999999754
No 96
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.26 E-value=3.7e-06 Score=81.46 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--ChhhH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYY 136 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~~~~ 136 (263)
.++.|||...+.- .|......+.|++.|++++.+....+ +. +..+|+|+||||... ...+.
T Consensus 244 ~~~~iava~d~af------------~f~y~e~~~~L~~~g~~~~~~~~~~~-~~----l~~~D~lilpGG~~~~~~~~l~ 306 (451)
T PRK01077 244 PGVRIAVARDAAF------------NFYYPENLELLRAAGAELVFFSPLAD-EA----LPDCDGLYLGGGYPELFAAELA 306 (451)
T ss_pred CCceEEEEecCcc------------cccHHHHHHHHHHCCCEEEEeCCcCC-CC----CCCCCEEEeCCCchhhHHHHHh
Confidence 3478999987721 23334566789999999988754222 21 457899999999631 11111
Q ss_pred H--HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 137 A--IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 137 ~--~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
. ...+.++++.+++ +||+|||-|+|+|+..+
T Consensus 307 ~~~~~~~~i~~~~~~g-----~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 307 ANTSMRASIRAAAAAG-----KPIYAECGGLMYLGESL 339 (451)
T ss_pred hCchhHHHHHHHHHcC-----CCEEEEcHHHHHHHhhh
Confidence 1 1236666776777 99999999999999976
No 97
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.15 E-value=7.2e-06 Score=87.91 Aligned_cols=95 Identities=14% Similarity=0.281 Sum_probs=64.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-----
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----- 132 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~----- 132 (263)
..||.++|+.-|+.++. .....+++.+|+.++.+..+.-.+. ...++.++||++|||.+..
T Consensus 1035 ~~~pkVaVl~~pGtN~~-------------~e~~~Af~~aGf~~~~V~~~dl~~~-~~~L~~~~glv~pGGFSyGD~l~s 1100 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGD-------------REMAAAFYAAGFEPWDVTMSDLLNG-RISLDDFRGIVFVGGFSYADVLDS 1100 (1307)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEeeecccc-cccccceeEEEEcCcCCCccccch
Confidence 45899999999987653 2345689999999888776531111 1236789999999997531
Q ss_pred h-hhHH------HHHHHHHHHHH-hCCCCCcceEEeccchhHHHHHH
Q 024713 133 G-LYYA------IVEKVFKKILE-KNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 133 ~-~~~~------~~~~li~~a~~-~~d~g~~~PILGIClG~QlL~~~ 171 (263)
. .|.. ...+-++.+++ .+ .++||||.|||+|...
T Consensus 1101 g~~wa~~i~~n~~~~~~~~~f~~~~d-----~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1101 AKGWAGSIRFNEPLLQQFQEFYNRPD-----TFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhCCC-----ceEEEEcHHHHHHHHc
Confidence 1 1111 12233445553 35 9999999999999985
No 98
>PRK00784 cobyric acid synthase; Provisional
Probab=98.11 E-value=6.7e-06 Score=80.47 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=49.7
Q ss_pred HHHHHH-cCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChh--hHHH--HHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 91 VKFVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL--YYAI--VEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 91 v~~le~-~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~--~~~~--~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.+.|++ +|++++.+.. .+. +..+|+|+||||...... +... ..+.++.+.+++ +||||||.||
T Consensus 268 l~~l~~~~g~~v~~~s~---~~~----l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g-----~pilg~C~G~ 335 (488)
T PRK00784 268 FDPLRAEPGVDVRYVRP---GEP----LPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRG-----GPVLGICGGY 335 (488)
T ss_pred hHHHhhcCCCeEEEECC---ccc----cccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcC-----CeEEEECHHH
Confidence 457777 9999888753 222 557899999999864222 1121 234555566677 9999999999
Q ss_pred HHHHHHH
Q 024713 166 ELLTMII 172 (263)
Q Consensus 166 QlL~~~~ 172 (263)
|+|+...
T Consensus 336 ~~L~~~~ 342 (488)
T PRK00784 336 QMLGRRI 342 (488)
T ss_pred HHHhhhc
Confidence 9999975
No 99
>PHA03366 FGAM-synthase; Provisional
Probab=98.09 E-value=7.1e-05 Score=80.77 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh----
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG---- 133 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~---- 133 (263)
..||.+.|+.-|+.++. .....+++.+|+.+..+..+.-... . .++.++||+++||.....
T Consensus 1026 ~~~prVaIl~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dL~~~-~-~l~~f~glv~~GGFS~gD~l~~ 1090 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGP-------------HALLAAFTNAGFDPYPVSIEELKDG-T-FLDEFSGLVIGGSSGAEDSYTG 1090 (1304)
T ss_pred CCCCeEEEEECCCCCCH-------------HHHHHHHHHcCCceEEEEeecCCCC-C-ccccceEEEEcCCCCCcccccH
Confidence 46899999999987542 2345689999999888876431110 1 167899999999986411
Q ss_pred --hhHH------HHHHHHHHHHH-hCCCCCcceEEeccc-hhHHHHHH
Q 024713 134 --LYYA------IVEKVFKKILE-KNDAGDHFPLYAHCL-GFELLTMI 171 (263)
Q Consensus 134 --~~~~------~~~~li~~a~~-~~d~g~~~PILGICl-G~QlL~~~ 171 (263)
.+.. ...+-++.+++ .+ .++||||. |+|+|...
T Consensus 1091 ~~~~a~~il~n~~~~~~~~~f~~r~d-----t~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1091 ARAAVAALLSNPAVRDALLRFLNRPD-----TFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHhhhchHHHHHHHHHHhCCC-----CeEEEeCcHHHHHHHHc
Confidence 1211 12344555553 35 99999998 99999985
No 100
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.07 E-value=1.3e-05 Score=77.69 Aligned_cols=92 Identities=18% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--ChhhH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYY 136 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~~~~ 136 (263)
.++.|||...+- ....| ..-.+.|++.|++++.+....+. . +..+|+|+||||... ...+.
T Consensus 243 ~~~~Iava~d~a----------fnFy~--~~~~~~L~~~g~~~~~~~~~~d~-~----l~~~d~l~ipGG~~~~~~~~l~ 305 (449)
T TIGR00379 243 KYVRIAVAQDQA----------FNFYY--QDNLDALTHNAAELVPFSPLEDT-E----LPDVDAVYIGGGFPELFAEELS 305 (449)
T ss_pred CCcEEEEEechh----------hceeH--HHHHHHHHHCCCEEEEECCccCC-C----CCCCCEEEeCCcHHHHHHHHHH
Confidence 347899988652 11222 45677899999999888643221 2 457899999999641 11111
Q ss_pred HH--HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 137 AI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 137 ~~--~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
.. ..+-++.+.+.+ .||||||-|+|+|+...
T Consensus 306 ~~~~~~~~i~~~~~~G-----~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 306 QNQALRDSIKTFIHQG-----LPIYGECGGLMYLSQSL 338 (449)
T ss_pred hhhHHHHHHHHHHHcC-----CCEEEEcHHHHHHHhhh
Confidence 11 134555555667 99999999999999975
No 101
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.06 E-value=1.2e-05 Score=86.67 Aligned_cols=94 Identities=16% Similarity=0.271 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh-----
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG----- 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~----- 133 (263)
.||.++|+.-|+.++. .....+++.+|+.+..+..+.-.+. ...++.+++|++|||.....
T Consensus 1034 ~~pkv~il~~pG~N~~-------------~e~~~Af~~aG~~~~~v~~~dl~~~-~~~l~~~~~l~~~GGFS~gD~lgsg 1099 (1290)
T PRK05297 1034 ARPKVAILREQGVNSH-------------VEMAAAFDRAGFDAIDVHMSDLLAG-RVTLEDFKGLVACGGFSYGDVLGAG 1099 (1290)
T ss_pred CCCeEEEEECCCCCCH-------------HHHHHHHHHcCCCeEEEEeecCcCC-CCChhhCcEEEECCccCCcccchHH
Confidence 5799999999987653 2345689999999887775421110 11367899999999976421
Q ss_pred h-hHHH------HHHHHHHHH-HhCCCCCcceEEeccchhHHHHHH
Q 024713 134 L-YYAI------VEKVFKKIL-EKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 134 ~-~~~~------~~~li~~a~-~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
. +... ..+-++.++ +.+ .++||||.|||+|...
T Consensus 1100 ~~~a~~~~~n~~~~~~~~~f~~~~d-----~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1100 EGWAKSILFNPRLRDQFEAFFARPD-----TFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHhhccHHHHHHHHHHHhCCC-----ceEEEEcHHHHHHHHh
Confidence 1 1111 123334433 344 9999999999999986
No 102
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.04 E-value=1.6e-05 Score=56.13 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH--HHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~--~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
.+.+.+++.+..+.+++.............++|+|++|||+....... ....+.+.+..+++ +|++|+|.|+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~g~~ 90 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAG-----KPVLGICLGAQ 90 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcC-----CEEEEEecccc
Confidence 466788999998888877654321112356799999999998533221 22234455555556 99999999998
Q ss_pred HH
Q 024713 167 LL 168 (263)
Q Consensus 167 lL 168 (263)
++
T Consensus 91 ~~ 92 (92)
T cd03128 91 LL 92 (92)
T ss_pred cC
Confidence 74
No 103
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.86 E-value=4.8e-05 Score=64.05 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=52.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc------CCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA------GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~------G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
.-||||++-.+. ||. .++.++++ +....+.+.. +.++ ++++||+|+|||....-
T Consensus 11 n~VIGVLALQGA-------------FiE--H~N~~~~c~~en~y~Ik~~~~tVK-T~~D----~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 11 NVVIGVLALQGA-------------FIE--HVNHVEKCIVENRYEIKLSVMTVK-TKND----LAQCDALIIPGGESTAM 70 (226)
T ss_pred ceEEeeeehhhH-------------HHH--HHHHHHHhhccCcceEEEEEEeec-CHHH----HhhCCEEEecCCchhHH
Confidence 357999997752 443 34444432 2233333433 3333 67899999999987321
Q ss_pred hhHHHH----HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcC
Q 024713 134 LYYAIV----EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (263)
Q Consensus 134 ~~~~~~----~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG 174 (263)
...... ..+.....+- .+|+||.|-||-+|..-+.|
T Consensus 71 slia~~tgL~d~L~~fVhn~-----~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHNP-----SKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred HHHHhhhhhHHHHHHHhcCC-----CccceeechhhhhhhhhhcC
Confidence 111111 1233222222 39999999999999987544
No 104
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.73 E-value=8e-05 Score=71.90 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=58.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-hhhHHH-
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI- 138 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-~~~~~~- 138 (263)
+.|||-... .-+|.+..-.+.||++ ++++.+..-.+ +. +..+|+|+||||-..- ......
T Consensus 234 ~~iavA~D~------------AF~FyY~enl~~L~~~-aelv~fSPl~~-~~----lp~~D~l~lpGG~~e~~~~~L~~n 295 (433)
T PRK13896 234 PTVAVARDA------------AFCFRYPATIERLRER-ADVVTFSPVAG-DP----LPDCDGVYLPGGYPELHADALADS 295 (433)
T ss_pred CeEEEEEcC------------ccceeCHHHHHHHHhc-CcEEEEcCCCC-CC----CCCCCEEEeCCCchhhHHHHHHhC
Confidence 678887633 1344455667889999 88888765332 22 4578999999997421 111111
Q ss_pred -HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 139 -VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 139 -~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
..+-++.+.+++ .||+|||=|+|+|+..+
T Consensus 296 ~~~~~i~~~~~~G-----~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 296 PALDELADRAADG-----LPVLGECGGLMALAESL 325 (433)
T ss_pred CcHHHHHHHHHCC-----CcEEEEehHHHHhhccc
Confidence 113444445667 99999999999999875
No 105
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.73 E-value=0.00013 Score=78.43 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=63.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh----
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG---- 133 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~---- 133 (263)
..||.+.|+.-|+.++. .....+++.+|+.+..+..+.-.+. . .++.++||+++||.+...
T Consensus 927 ~~~p~VaIl~~pG~N~~-------------~e~~~Af~~aGf~~~~v~~~dl~~~-~-~l~~f~glv~~Ggfsy~D~lgs 991 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVP-------------HGLLAALTNAGFDPRIVSITELKKT-D-FLDTFSGLIIGGASGTLDSEVG 991 (1202)
T ss_pred CCCCeEEEEeCCCCCCH-------------HHHHHHHHHcCCceEEEEeccCCCC-C-chhheEEEEEcCcCCCCccchH
Confidence 45899999999987542 2345689999999888876531110 1 256789999999976421
Q ss_pred --hhHH------HHHHHHHHHHH-hCCCCCcceEEeccc-hhHHHHHH
Q 024713 134 --LYYA------IVEKVFKKILE-KNDAGDHFPLYAHCL-GFELLTMI 171 (263)
Q Consensus 134 --~~~~------~~~~li~~a~~-~~d~g~~~PILGICl-G~QlL~~~ 171 (263)
.+.. ...+-++.+++ .+ .++||||. |||+|...
T Consensus 992 g~~~a~~il~n~~~~~~~~~f~~r~d-----tf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 992 ARALAAALLRNQAFLRDLLTFLNRPD-----TFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhCCC-----ceEEEeCcHHHHHHHHc
Confidence 1111 12234455553 35 99999998 99999985
No 106
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.67 E-value=7.4e-05 Score=62.33 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=37.8
Q ss_pred hcccCCEEEECCCCCC--ChhhHHH--HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHc
Q 024713 116 KLELVNGVLYTGGWAK--DGLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (263)
Q Consensus 116 ~l~~~dGlilpGG~~~--~~~~~~~--~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~G 173 (263)
.+..+|+|+||||-.. +..+... .++-++.+.+.+ .||+|||=|+|+|...+-
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G-----~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAG-----GPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcC-----CcEEEEchHHHHHHHHHh
Confidence 3668999999999641 1111111 235566666778 999999999999999753
No 107
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.57 E-value=0.00029 Score=61.89 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=38.9
Q ss_pred cccCCEEEECCCCCCChhh------------HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHc
Q 024713 117 LELVNGVLYTGGWAKDGLY------------YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~------------~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~G 173 (263)
++.+|+|+||||......+ .....++++.+.+++ +||.+||.|-++|+.+.+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~g-----K~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAG-----KPIGAICIAPALAAKILG 143 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCC-----CeEEEECHHHHHHHHHhc
Confidence 3468999999996421111 123457888888888 999999999999998764
No 108
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.56 E-value=0.00015 Score=66.59 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=62.9
Q ss_pred ccCCEEEECCCCCC-----ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH-HHHHHcCcccccccccCCCcceee
Q 024713 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL-LTMIISKDKNILESFNAADQASTL 191 (263)
Q Consensus 118 ~~~dGlilpGG~~~-----~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql-L~~~~GG~~~~l~~~~~~~~~~pl 191 (263)
+.+||+|+||-|-- +-.|..+..++++++.+.. ++.|.||.|.|. |....|-.-..+.. .-.+-.+.
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v-----~stl~iCWgAqAaLy~~yGI~K~~l~~--KlfGVf~~ 169 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHV-----TSTLFICWGAQAALYHFYGIPKYPLPE--KLFGVFEH 169 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHH----EEEEE--EEEEEEEE
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----CcchhhhHHHHHHHHHHcCCCcccCCC--cceeceee
Confidence 36899999999862 2356677889999999998 999999999999 66566654211211 01111222
Q ss_pred EEeecCCCCCcccccCChhhhhhcCCCceeEEEecc--eecCCCccccccCCCCcEEEEEEccCCCCEEE
Q 024713 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHY--GISPETLRKNLDLSRFFKMLTTSADEDNKCKP 259 (263)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~--~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fv 259 (263)
... ...++|++++++.+ +-=||- ++..+... -.+.++|+|.+.+ .|...+
T Consensus 170 ~~~---~~~~pLl~Gfdd~f----------~~PhSR~t~i~~~~i~----~~~~L~vLa~s~~-~G~~l~ 221 (298)
T PF04204_consen 170 RVL---DPDHPLLRGFDDTF----------FAPHSRYTEIDRDDIK----KAPGLEVLAESEE-AGVFLV 221 (298)
T ss_dssp EES----SS-GGGTT--SEE----------EEEEEEEEE--HHHHC----T-TTEEEEEEETT-TEEEEE
T ss_pred ecc---CCCChhhcCCCccc----------cCCcccccCCCHHHHh----cCCCcEEEeccCC-cceEEE
Confidence 211 22689999987643 222443 33333332 2567899999943 454333
No 109
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.50 E-value=0.00049 Score=60.61 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=38.7
Q ss_pred cccCCEEEECCCCCCC---------hhh---HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 117 LELVNGVLYTGGWAKD---------GLY---YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 117 l~~~dGlilpGG~~~~---------~~~---~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
.+.+|+|+||||.... +.+ .....++++++.+++ +||.+||.|-++|+.+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~g-----K~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAG-----KPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHHh
Confidence 4468999999995410 111 123458888888888 99999999999999876
No 110
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.49 E-value=0.00012 Score=58.11 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=31.1
Q ss_pred cCCEEEECCCCCCChhhHHHH---HHHHHHHHHhCCCCCcceEEeccchhHHH
Q 024713 119 LVNGVLYTGGWAKDGLYYAIV---EKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (263)
Q Consensus 119 ~~dGlilpGG~~~~~~~~~~~---~~li~~a~~~~d~g~~~PILGIClG~QlL 168 (263)
++|.|||||| ++.+.+.... .+.++..++++ +|+||||+|.-+-
T Consensus 44 ~ad~lVlPGG-a~~~~~~~L~~~g~~~i~~~v~~g-----~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGG-ADLPYCRALNGKGNRRIRNFVRNG-----GNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCC-ChHHHHHHHHhhCcHHHHHHHHCC-----CcEEEEecCccce
Confidence 7899999995 4344443322 35666666777 9999999998554
No 111
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.49 E-value=0.001 Score=59.20 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=67.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC--hhhH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD--GLYY 136 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~--~~~~ 136 (263)
.+|.|.+....... +....|+. ++.+++++.|+++..+.... +..+.+..+|+|+++||.... ..+.
T Consensus 30 ~~~~v~fIPtAs~~-------~~~~~y~~-~~~~af~~lG~~v~~l~~~~---d~~~~l~~ad~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 30 GRRKAVFIPYAGVT-------QSWDDYTA-KVAEALAPLGIEVTGIHRVA---DPVAAIENAEAIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CCCeEEEECCCCCC-------CCHHHHHH-HHHHHHHHCCCEEEEeccch---hhHHHHhcCCEEEECCccHHHHHHHHH
Confidence 46778887655421 23467775 68899999999988776432 233457889999999997621 1111
Q ss_pred HH-HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 137 AI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 137 ~~-~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
+. ..+.++.+++++ +|++|+|-|+-+++...
T Consensus 99 ~~gl~~~l~~~~~~G-----~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 99 ERGLLAPIREAVKNG-----TPYIGWSAGANVAGPTI 130 (233)
T ss_pred HCCcHHHHHHHHHCC-----CEEEEECHHHHhhhccc
Confidence 11 236677777777 99999999997777643
No 112
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.47 E-value=0.00073 Score=57.05 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=36.6
Q ss_pred cCCEEEECCCCCCChh-hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 119 LVNGVLYTGGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 119 ~~dGlilpGG~~~~~~-~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+|+|++|||+..... .......+++.+.+++ +||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~-----k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEAN-----KPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcC-----CEEEEECcHHHHHHHc
Confidence 5799999999752111 1123457888888888 9999999999999985
No 113
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.45 E-value=0.00024 Score=69.45 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=36.0
Q ss_pred cccCCEEEECCCCCCChhhH--HH--HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLYY--AI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~~--~~--~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
+..+|+|+||||........ .. ..+-++.+.+.+ .||||||-|||+|...+
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G-----~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEG-----GIVIGICGGYQMLGKEL 336 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcC-----CcEEEEcHHHHHhhhhh
Confidence 45789999999986322111 11 134455555667 99999999999999964
No 114
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.40 E-value=0.001 Score=55.10 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCeEEEEecCCC------------hhhHHH-hcccCCEEEECCCCCCChhh-HHHHHHHHHHHHHhCCCCC
Q 024713 89 SYVKFVESAGARVIPLIYNEP------------EDVLFE-KLELVNGVLYTGGWAKDGLY-YAIVEKVFKKILEKNDAGD 154 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~------------~~~l~~-~l~~~dGlilpGG~~~~~~~-~~~~~~li~~a~~~~d~g~ 154 (263)
...+.++++|.++..+..+.. ...+.+ ..+.+|+|++|||....... .....++++++.+++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~---- 92 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKG---- 92 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcC----
Confidence 356788888988876643210 011222 12258999999996521100 123457788888888
Q ss_pred cceEEeccchhHHHHHH
Q 024713 155 HFPLYAHCLGFELLTMI 171 (263)
Q Consensus 155 ~~PILGIClG~QlL~~~ 171 (263)
+||.|||.|.++|+.+
T Consensus 93 -~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 93 -KPVAAICHGPQLLISA 108 (166)
T ss_pred -CEEEEEChHHHHHHhc
Confidence 9999999999999975
No 115
>PRK04155 chaperone protein HchA; Provisional
Probab=97.36 E-value=0.0027 Score=58.26 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=37.3
Q ss_pred cccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+.+|+|+||||......+ .....++++++.+++ +||.+||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~-----K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND-----RFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHc
Confidence 3578999999996521111 123458899999888 9999999999877764
No 116
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.23 E-value=0.00084 Score=59.61 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=38.0
Q ss_pred cccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+.+|+|++|||......+ .....++++.+.+.+ +||-+||.|-++|..+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~g-----K~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANG-----GVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHhh
Confidence 3468999999996521111 123458899998888 9999999999999876
No 117
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.22 E-value=0.0026 Score=52.58 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=51.4
Q ss_pred HHHHHHHcCCeEEEEecC-CCh-----h--------hHHHh-cccCCEEEECCCCCCChh-hHHHHHHHHHHHHHhCCCC
Q 024713 90 YVKFVESAGARVIPLIYN-EPE-----D--------VLFEK-LELVNGVLYTGGWAKDGL-YYAIVEKVFKKILEKNDAG 153 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~-~~~-----~--------~l~~~-l~~~dGlilpGG~~~~~~-~~~~~~~li~~a~~~~d~g 153 (263)
..+.++++|+++.++..+ ... . .+.+. ...+|.|++|||+..... ......++++++.+++
T Consensus 18 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~--- 94 (165)
T cd03134 18 PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAG--- 94 (165)
T ss_pred HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcC---
Confidence 456788899988877544 210 0 12221 125799999999752211 1123457788888888
Q ss_pred CcceEEeccchhHHHHHH
Q 024713 154 DHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 154 ~~~PILGIClG~QlL~~~ 171 (263)
+||.|||-|.++|+.+
T Consensus 95 --~~i~~ic~G~~~La~a 110 (165)
T cd03134 95 --KPVAAICHGPWVLISA 110 (165)
T ss_pred --CeEEEEchHHHHHHhc
Confidence 9999999999999875
No 118
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.11 E-value=0.001 Score=60.86 Aligned_cols=115 Identities=14% Similarity=0.167 Sum_probs=69.5
Q ss_pred ccCCEEEECCCCCC-----ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcC-cccccccccCCCcceee
Q 024713 118 ELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK-DKNILESFNAADQASTL 191 (263)
Q Consensus 118 ~~~dGlilpGG~~~-----~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG-~~~~l~~~~~~~~~~pl 191 (263)
+++||+|+||-|-- +-.|..+..++++++.+.. ...|.||.|.|.-...+-| .-..+.. .-.+-.+.
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v-----~Stl~iCWaAqAaLy~~yGI~K~~l~~--KlfGVf~h 170 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNV-----TSTMFICWAAQAGLKYFYGIPKYTLPE--KLSGVYKH 170 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHcCCCccccCC--ceEEeecC
Confidence 57899999999862 2356677789999998888 9999999999995555434 2111111 11111222
Q ss_pred EEeecCCCCCcccccCChhhhhhcCCCceeEEEecc--eecCCCccccccCCCCcEEEEEEccCCCCEE
Q 024713 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHY--GISPETLRKNLDLSRFFKMLTTSADEDNKCK 258 (263)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~--~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~f 258 (263)
... . .++|++++++.+. -=||- .|..++..+ .+.++|+|.+ ++.|...
T Consensus 171 ~~~---~-~~pL~rGfdd~f~----------~PhSR~t~i~~~~i~~----~~~L~vla~s-~e~G~~l 220 (300)
T TIGR01001 171 DIA---P-DSLLLRGFDDFFL----------APHSRYADFDAEDIDK----VTDLEILAES-DEAGVYL 220 (300)
T ss_pred ccC---C-CCccccCCCCccc----------cCCCCCCCCCHHHHhc----CCCCeEEecC-CCcceEE
Confidence 111 2 5789999886542 12444 344333322 2467888888 3345433
No 119
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.07 E-value=0.0019 Score=57.39 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=36.5
Q ss_pred ccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.+|+|++|||......+ .....++++.+.+++ +||-.||.|-+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~g-----K~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKND-----RFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcC-----CEEEEECcHHHHHHhc
Confidence 578999999996521111 123457889998888 9999999999877764
No 120
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.96 E-value=0.0051 Score=52.10 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=60.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--------------hhhHHHhc--ccCCEEE
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------------EDVLFEKL--ELVNGVL 124 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--------------~~~l~~~l--~~~dGli 124 (263)
..|+|+..++.. ...++. -.+.++++|..+..+..... .....+.. +.+|.|+
T Consensus 3 ~~i~i~~~~g~e---------~~E~~~--p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ 71 (188)
T COG0693 3 KKIAILLADGFE---------DLELIV--PYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALV 71 (188)
T ss_pred ceeEEEecCcce---------ehhHhH--HHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEE
Confidence 357777777542 223333 45688999987766544321 00001112 3789999
Q ss_pred ECCC-CCCChhhH-HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 125 YTGG-WAKDGLYY-AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 125 lpGG-~~~~~~~~-~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+||| ......+. .....+++++.+.+ +||.+||.|-++|..+
T Consensus 72 ipGG~~~~~~~~~~~~~~~~v~~~~~~~-----k~vaaIC~g~~~L~~a 115 (188)
T COG0693 72 IPGGDHGPEYLRPDPDLLAFVRDFYANG-----KPVAAICHGPAVLAAA 115 (188)
T ss_pred ECCCccchhhccCcHHHHHHHHHHHHcC-----CEEEEEChhHHHHhcc
Confidence 9999 54211111 33458888888888 9999999999999875
No 121
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.93 E-value=0.0061 Score=52.88 Aligned_cols=95 Identities=13% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--ChhhHHHhcccCCEEEECCCCCCChhhH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dGlilpGG~~~~~~~~ 136 (263)
..|.|.++..... ....|. ..|.+++++.|++++.+.... +.+.+.+.+..+|+|+++||.. ..+.
T Consensus 28 ~~~~i~~iptA~~---------~~~~~~-~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~--~~~~ 95 (210)
T cd03129 28 AGARVLFIPTASG---------DRDEYG-EEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ--LRLL 95 (210)
T ss_pred CCCeEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH--HHHH
Confidence 4677888765542 123444 468889999999888776532 2344556688999999999965 2222
Q ss_pred HH-----H-HHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 137 AI-----V-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 137 ~~-----~-~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.. . +.+.+.+ .++ .|+.|+|-|..++...
T Consensus 96 ~~l~~t~~~~~i~~~~-~~G-----~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 96 SVLRETPLLDAILKRV-ARG-----VVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHhCChHHHHHHHH-HcC-----CeEEEcCHHHHHhhhc
Confidence 22 1 2333333 356 9999999999999975
No 122
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.93 E-value=0.0064 Score=49.15 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=60.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-----------h-hHHHh-cccCCEEEECCC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------D-VLFEK-LELVNGVLYTGG 128 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-----------~-~l~~~-l~~~dGlilpGG 128 (263)
.|+|+..++-. ..+ .....+.++.+|.++.++..+... + .+.+. ...+|.|++|||
T Consensus 3 ~v~ill~~g~~---------~~e--~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg 71 (142)
T cd03132 3 KVGILVADGVD---------AAE--LSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGG 71 (142)
T ss_pred EEEEEEcCCcC---------HHH--HHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCC
Confidence 47888766421 111 234677889999988877643210 0 11111 124799999999
Q ss_pred CCCChh--hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 129 WAKDGL--YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 129 ~~~~~~--~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...... ......++++++.+++ +||.+||-|-.+|+.+
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~-----~~I~aic~G~~~La~a 111 (142)
T cd03132 72 AEAAFALAPSGRALHFVTEAFKHG-----KPIGAVGEGSDLLEAA 111 (142)
T ss_pred ccCHHHHccChHHHHHHHHHHhcC-----CeEEEcCchHHHHHHc
Confidence 763221 1123447788877777 9999999999999974
No 123
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.72 E-value=0.0013 Score=53.78 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=36.4
Q ss_pred cccCCEEEECCCCC-CChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWA-KDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~-~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+.+|+|++|||.. ...-. .....++++++.+++ +||.+||.|-.+|+.+
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~-----k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAG-----KPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT------EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcC-----CeEEecCCCcchhhcc
Confidence 34699999999976 21111 133568899998888 9999999999888876
No 124
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.51 E-value=0.028 Score=47.93 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=57.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC---------------hhhHHHh-cccCCE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---------------EDVLFEK-LELVNG 122 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~---------------~~~l~~~-l~~~dG 122 (263)
++|.|.|+..++-. ...++ ..++.++++|..+........ ...+.+. .+.+|.
T Consensus 1 ~~~~~~il~~~g~~---------~~e~~--~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~ 69 (196)
T PRK11574 1 MSASALVCLAPGSE---------ETEAV--TTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDV 69 (196)
T ss_pred CCceEEEEeCCCcc---------hhhHh--HHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCE
Confidence 46778888877532 12232 356778888876665433210 0122221 236899
Q ss_pred EEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 123 VLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 123 lilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
|++|||....... ......+++++.+++ ++|.+||-|..+|..
T Consensus 70 l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g-----~~v~aic~G~~~ll~ 114 (196)
T PRK11574 70 IVLPGGIKGAECFRDSPLLVETVRQFHRSG-----RIVAAICAAPATVLV 114 (196)
T ss_pred EEECCCCchhhhhhhCHHHHHHHHHHHHCC-----CEEEEECHhHHHHHH
Confidence 9999996311111 112347777777777 999999999987543
No 125
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.45 E-value=0.012 Score=49.65 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=36.7
Q ss_pred cccCCEEEECCCCCCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.|++|||..... .......++++...+++ ++|.+||-|.++|+.+
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~g~~~La~a 112 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARG-----ARVASVCTGAFVLAEA 112 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHc
Confidence 45789999999965321 11223346777777777 9999999999999985
No 126
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.40 E-value=0.0081 Score=50.23 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=37.1
Q ss_pred ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.+|.|++|||............++++++.+++ ++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQG-----KPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHC
Confidence 468999999997532211123457888887777 9999999999999985
No 127
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.39 E-value=0.022 Score=46.55 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCeEEEEecCCC-------------hhhHHH-hcccCCEEEECCCC-CCChh-hHHHHHHHHHHHHHhCCC
Q 024713 89 SYVKFVESAGARVIPLIYNEP-------------EDVLFE-KLELVNGVLYTGGW-AKDGL-YYAIVEKVFKKILEKNDA 152 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~-------------~~~l~~-~l~~~dGlilpGG~-~~~~~-~~~~~~~li~~a~~~~d~ 152 (263)
...+.++.+|.++..+..+.. ...+.+ ....+|.|++|||. ..... ......++++++.+++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~-- 93 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKG-- 93 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcC--
Confidence 356788888887766643211 011222 12578999999997 31111 1123347777777777
Q ss_pred CCcceEEeccchhHHHHHH
Q 024713 153 GDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 153 g~~~PILGIClG~QlL~~~ 171 (263)
++|.+||-|..+|+.+
T Consensus 94 ---~~i~~ic~g~~~La~a 109 (163)
T cd03135 94 ---KLIAAICAAPAVLAKA 109 (163)
T ss_pred ---CEEEEEchhHHHHHHc
Confidence 9999999999999986
No 128
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.23 E-value=0.0048 Score=54.19 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhh----HHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY----YAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~----~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
+..+..|+.+.+.+.+.... .+ .+.+|-+++-||.+..-.. ....++-++.+++.+ +|+|.||=|+|+
T Consensus 28 ~ra~~rgi~v~i~~vsl~d~-~~--~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g-----~p~laiCgg~Ql 99 (250)
T COG3442 28 QRAEKRGIKVEIVEVSLTDT-FP--DDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENG-----KPVLAICGGYQL 99 (250)
T ss_pred HHHHhcCCceEEEEeecCCC-CC--cccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcC-----CcEEEEccchhh
Confidence 46778898887776654322 21 2468988888887631111 111235677777888 999999999999
Q ss_pred HHHH
Q 024713 168 LTMI 171 (263)
Q Consensus 168 L~~~ 171 (263)
|...
T Consensus 100 LG~y 103 (250)
T COG3442 100 LGQY 103 (250)
T ss_pred ccce
Confidence 9986
No 129
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.02 E-value=0.02 Score=47.97 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=34.9
Q ss_pred cccCCEEEECCCCCCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.|++|||..... .......++++++.+++ ++|.+||-|.-+|+.+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~-----k~i~aic~g~~~La~a 110 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARA-----KYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccC-----CEEEEEchHHHHHHhc
Confidence 34689999999965211 11122346666666666 9999999999888874
No 130
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=95.73 E-value=0.039 Score=45.54 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHH-----HHHHHHHHHHhCCCCCcceEEecc
Q 024713 89 SYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAI-----VEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~-----~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+.++++++|+++..++... +.++..+.+..+|+|+|.||.. ..+... ..+.++.+++++ .|+.|+-
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~--~~l~~~l~~t~l~~~i~~~~~~G-----~vi~G~S 76 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDT--FRLLRQLKETGLDEAIREAYRKG-----GVIIGTS 76 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-H--HHHHHHHHHTTHHHHHHHHHHTT-----SEEEEET
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCH--HHHHHHHHhCCHHHHHHHHHHCC-----CEEEEEC
Confidence 57889999999988887654 3445666788999999999954 122222 246777777777 9999999
Q ss_pred chhHH
Q 024713 163 LGFEL 167 (263)
Q Consensus 163 lG~Ql 167 (263)
-|.-+
T Consensus 77 AGA~i 81 (154)
T PF03575_consen 77 AGAMI 81 (154)
T ss_dssp HHHHC
T ss_pred hHHhh
Confidence 99844
No 131
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.69 E-value=0.062 Score=55.29 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-----------h-hhHHHh-cccCCEEEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------E-DVLFEK-LELVNGVLY 125 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-----------~-~~l~~~-l~~~dGlil 125 (263)
....|||+...+-. ...+ ..+.++|+++|+.+.++..... . ..+... ...+|+|++
T Consensus 596 ~gRKIaILVaDG~d---------~~ev--~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvV 664 (752)
T PRK11249 596 KGRKVAILLNDGVD---------AADL--LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIV 664 (752)
T ss_pred cccEEEEEecCCCC---------HHHH--HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEE
Confidence 44579999866431 1122 2477899999998887754211 0 011110 114899999
Q ss_pred CCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 126 TGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 126 pGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
|||....... ......+++.+.++. ++|.+||-|.++|+.+
T Consensus 665 PGG~~~~~~L~~d~~al~fL~eaykHg-----K~IAAiCaG~~LLaaA 707 (752)
T PRK11249 665 PGGKANIADLADNGDARYYLLEAYKHL-----KPIALAGDARKLKAAL 707 (752)
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHcC-----CEEEEeCccHHHHHhc
Confidence 9996421111 123457888888888 9999999999999974
No 132
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.59 E-value=0.026 Score=55.04 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh--hhHHH---HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 98 GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG--LYYAI---VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 98 G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~--~~~~~---~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
+.++..++...+ +..+|.|||||--..-. .+.+. .+++.+++. .+ .||+|||=|||||....
T Consensus 276 ~v~v~~v~~~~~-------l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~-~~-----~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKPGSD-------LRDADLVILPGSKNTIADLKILREGGMDEKILEYAR-KG-----GDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEeccCCC-------CCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHh-CC-----CCEEEEcchHHhhhhhh
Confidence 677777654332 55699999999876311 22221 135555553 35 89999999999999853
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=95.46 E-value=0.015 Score=50.98 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=37.0
Q ss_pred ccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.+|+|++|||....... .....++++++.+++ ++|.+||-|-.+|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~-----k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENG-----KVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcC-----CEEEEEcchHHHHHhc
Confidence 368999999997521111 123457888888888 9999999999999985
No 134
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.38 E-value=0.043 Score=46.58 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=36.4
Q ss_pred cccCCEEEECCCCCCCh--hhH--HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDG--LYY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~--~~~--~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.|++|||+.... ... ....++++++.+++ ++|.+||-|..+|+.+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANG-----ATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcC-----CEEEEecHHHHHHHHc
Confidence 45789999999865322 111 22346777777777 9999999999999975
No 135
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.038 Score=49.75 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=68.0
Q ss_pred ccCCEEEECCCCC----C-ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeE
Q 024713 118 ELVNGVLYTGGWA----K-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQ 192 (263)
Q Consensus 118 ~~~dGlilpGG~~----~-~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~ 192 (263)
+++||+|++|.|- + +-.|..+.++++++....- .-.|=||-|.|.--.++-|-.. ...-..-.+..+..
T Consensus 98 ~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V-----~STl~ICWgaqAaly~~yGv~K-~~l~~Kl~GVy~h~ 171 (307)
T COG1897 98 QKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHV-----TSTLHICWGAQAALYYFYGVPK-YTLPEKLSGVYKHD 171 (307)
T ss_pred cccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcc-----hhhhhhHHHHHHHHHHHcCCCc-cccchhhhceeecc
Confidence 4799999999985 1 2356667789999987665 7789999999987777655311 11000111112222
Q ss_pred EeecCCCCCcccccCChhhhhhcCCCceeEEEecc--eecCCCccccccCCCCcEEEEEEccCCC
Q 024713 193 FMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHY--GISPETLRKNLDLSRFFKMLTTSADEDN 255 (263)
Q Consensus 193 ~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~--~V~p~~~~~~~~L~~~f~v~Ats~D~~g 255 (263)
.. ...+.|++++.+.+. -=||- .+..+...+.+ .++|++.+ ++-|
T Consensus 172 ~l---~p~~~l~rGfdd~f~----------~PhSR~t~~~~e~i~~~~----~LeIL~es-~e~G 218 (307)
T COG1897 172 IL---SPHSLLTRGFDDSFL----------APHSRYTDVPKEDILAVP----DLEILAES-KEAG 218 (307)
T ss_pred cc---CccchhhccCCcccc----------CcccccccCCHHHHhhCC----Cceeeecc-cccc
Confidence 11 226789999887653 12332 23333433333 46888888 4444
No 136
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=95.13 E-value=0.17 Score=45.39 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe-EEEEecCC----ChhhHHHhcccCCEEEECCCCCC--
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNE----PEDVLFEKLELVNGVLYTGGWAK-- 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~-~v~i~~~~----~~~~l~~~l~~~dGlilpGG~~~-- 131 (263)
..|.|.|+...+. ....|. ..|.++++++|+. +.++.... +.++..+.+.++|+|+++||...
T Consensus 27 ~~~rI~~iptAS~---------~~~~~~-~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l 96 (250)
T TIGR02069 27 EDAIIVIITSASE---------EPREVG-ERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRI 96 (250)
T ss_pred CCceEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHH
Confidence 3478888875532 223454 4688999999984 55565532 11233455789999999999652
Q ss_pred ChhhHH-HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 132 DGLYYA-IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 132 ~~~~~~-~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+.+ .....++.+++++ .|+.|+--|.-+|...
T Consensus 97 ~~~l~~t~l~~~l~~~~~~G-----~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 97 TSLLGDTPLLDRLRKRVHEG-----IILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHcCCcHHHHHHHHHHcC-----CeEEEccHHHHhcccc
Confidence 011111 1235677777777 9999999999888653
No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=95.09 E-value=0.11 Score=50.03 Aligned_cols=87 Identities=21% Similarity=0.354 Sum_probs=60.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcc-cCCEEEECCCCCCChhhHH-H
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE-LVNGVLYTGGWAKDGLYYA-I 138 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~-~~dGlilpGG~~~~~~~~~-~ 138 (263)
+.|+|-...- -.|-+....+.|+++|++++.+..-.+.+ +. .+|+|.|+||- |+.+. +
T Consensus 246 ~rIAVA~D~A------------F~FyY~~nl~~Lr~~GAelv~FSPL~D~~-----lP~~~D~vYlgGGY---PElfA~~ 305 (451)
T COG1797 246 VRIAVARDAA------------FNFYYPENLELLREAGAELVFFSPLADEE-----LPPDVDAVYLGGGY---PELFAEE 305 (451)
T ss_pred ceEEEEecch------------hccccHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCCEEEeCCCC---hHHHHHH
Confidence 5899976442 23334556789999999999886544332 33 59999999994 33322 1
Q ss_pred ------HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 139 ------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 139 ------~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
..+-++++.+.+ +||+|=|=|+--|+..+
T Consensus 306 L~~n~~~~~~i~~~~~~G-----~piyaECGGlMYL~~~l 340 (451)
T COG1797 306 LSANESMRRAIKAFAAAG-----KPIYAECGGLMYLGESL 340 (451)
T ss_pred HhhCHHHHHHHHHHHHcC-----CceEEecccceeehhhe
Confidence 235566666777 99999999998888764
No 138
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.98 E-value=0.22 Score=43.62 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=63.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeE-EEEecCC----ChhhHHHhcccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARV-IPLIYNE----PEDVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~-v~i~~~~----~~~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
..|.|.++...... ...+ ...|.+++++.|++. ..+.... +...+.+.+.++|+|++.||.. .
T Consensus 28 ~~~~i~~iptA~~~---------~~~~-~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~--~ 95 (217)
T cd03145 28 AGARIVVIPAASEE---------PAEV-GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ--L 95 (217)
T ss_pred CCCcEEEEeCCCcC---------hhHH-HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH--H
Confidence 35788888766421 1334 446888999999864 4443331 2233445688999999999965 1
Q ss_pred hhHHH-----HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 134 LYYAI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 134 ~~~~~-----~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+... ..+.++.+++++ .|+.|+--|.-++...
T Consensus 96 ~~~~~l~~t~l~~~l~~~~~~G-----~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 96 RITSALGGTPLLDALRKVYRGG-----VVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHcCChHHHHHHHHHHcC-----CEEEEccHHHHhhhhc
Confidence 22221 236677777777 9999999999887764
No 139
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=94.53 E-value=0.047 Score=45.56 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=35.9
Q ss_pred cccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.|++|||....... .....++++.+.+++ ++|.+||-|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG-----KLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC-----CEEEEEChhHHHHHhc
Confidence 3468999999985311111 122346777777777 9999999999999985
No 140
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=94.41 E-value=0.072 Score=44.83 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=36.1
Q ss_pred cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.|++|||............++++...+++ +.|.+||-|..+|+.+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~-----~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRG-----VALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcC-----CEEEEEcHHHHHHHHc
Confidence 3468999999996532111122346777777777 9999999999999975
No 141
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.11 Score=53.85 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-----
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD----- 132 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~----- 132 (263)
.++|.+.|+.-.+.+ + ......++..+|++++-+..+.-.+- .--++.+-||+++||....
T Consensus 1056 s~~PkVAilREeGvN-------g------~rEMa~af~~AgF~~~DVtmtDlL~G-~~~ld~frGlaf~GGFSYaDvLgS 1121 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVN-------G------DREMAAAFYAAGFETVDVTMTDLLAG-RHHLDDFRGLAFCGGFSYADVLGS 1121 (1320)
T ss_pred cCCCceEEeeccccc-------c------HHHHHHHHHHcCCceeeeeeehhhcC-ceeHhHhcceeeecCcchHhhhcc
Confidence 458999999877642 1 12234478889998876654321100 1135678999999997621
Q ss_pred -hhhHH------HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 133 -GLYYA------IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 133 -~~~~~------~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..|.. .+..-++++..+.| .=-||||.|.|+|+..
T Consensus 1122 akGWAasil~ne~v~~QF~~F~~R~D----tFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1122 AKGWAASILFNESVRSQFEAFFNRQD----TFSLGICNGCQLMSRL 1163 (1320)
T ss_pred ccchhhheeeChhHHHHHHHHhcCCC----ceeeecccHhHHHHHh
Confidence 11211 11223333333222 5579999999999986
No 142
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=93.95 E-value=0.13 Score=47.28 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=35.9
Q ss_pred cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+.+|.||+|||............++++...+++ ++|.|||-|.-+|+.+
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~g~~~La~a 122 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARG-----ARLCSICSGVFVLAAA 122 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcC-----CEEEEEcHHHHHHHhc
Confidence 4578999999986532221222346666666666 9999999999999885
No 143
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=93.26 E-value=0.32 Score=43.19 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHcCCeEEEEecCCC-------------hh-hHHHhcccCCEEEECCCCCCChhhHH---HHHHHHHHHHHhCCCC
Q 024713 91 VKFVESAGARVIPLIYNEP-------------ED-VLFEKLELVNGVLYTGGWAKDGLYYA---IVEKVFKKILEKNDAG 153 (263)
Q Consensus 91 v~~le~~G~~~v~i~~~~~-------------~~-~l~~~l~~~dGlilpGG~~~~~~~~~---~~~~li~~a~~~~d~g 153 (263)
...+++.|+.|.....+.. .. .-+..-+.+|.||||||.-. ..... ...+++++..+.+
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g-~e~L~~~~~v~~lvK~q~~~g--- 100 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPG-AETLSECEKVVDLVKEQAESG--- 100 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchh-hhhhhhcHHHHHHHHHHHhcC---
Confidence 4568888888777654321 00 01122367999999999331 22222 2357777777777
Q ss_pred CcceEEeccchh
Q 024713 154 DHFPLYAHCLGF 165 (263)
Q Consensus 154 ~~~PILGIClG~ 165 (263)
++|..||.|-
T Consensus 101 --kLIaaICaap 110 (247)
T KOG2764|consen 101 --KLIAAICAAP 110 (247)
T ss_pred --CeEEEeecch
Confidence 9999999986
No 144
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=93.07 E-value=0.11 Score=42.88 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=32.5
Q ss_pred cccCCEEEECCCCCCChh-hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~-~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.||+|||+..... ......+.++...+++ .+|.+||-|..+|+.+
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~-----~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQG-----TYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCT-----SEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccc-----eEEeeeehHHHHHhhh
Confidence 457899999999871111 1111224444444445 9999999999999986
No 145
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=92.61 E-value=0.77 Score=40.47 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=58.3
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecC-CChhhHHHhcccCCEEEECCCCCCCh--hhHHH-HHHHHHHHHHhCCCCCcc
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKDG--LYYAI-VEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dGlilpGG~~~~~--~~~~~-~~~li~~a~~~~d~g~~~ 156 (263)
+.+.|+.. ..++++..|..+.-++.. .+.+.++..+.+.|.|++.||..+.= .+.+. ..++++...+++ +
T Consensus 46 ~~~~Yv~k-~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G-----~ 119 (224)
T COG3340 46 EDDFYVEK-VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAG-----T 119 (224)
T ss_pred chHHHHHH-HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcC-----C
Confidence 34567764 778999999999888764 45677777788899999999976311 11111 137888888888 9
Q ss_pred eEEeccchh
Q 024713 157 PLYAHCLGF 165 (263)
Q Consensus 157 PILGIClG~ 165 (263)
|..|+--|.
T Consensus 120 ~YiG~SAGA 128 (224)
T COG3340 120 PYIGWSAGA 128 (224)
T ss_pred ceEEeccCc
Confidence 999998776
No 146
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.23 E-value=1.6 Score=40.46 Aligned_cols=83 Identities=22% Similarity=0.185 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-----------------hhHHHhcccCCEEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEKLELVNGVL 124 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-----------------~~l~~~l~~~dGli 124 (263)
.|||..++.. ....-+...+.+|+++.|..+......... +......+.+|.+|
T Consensus 7 ~I~iv~~~~~---------~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (306)
T PRK03372 7 RVLLVAHTGR---------DEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVL 77 (306)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEE
Confidence 4999988753 122334567888999999888765421110 00012233589999
Q ss_pred ECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.-||-. .+. ...+.+...+ +|||||-.|.
T Consensus 78 ~lGGDG---T~L----~aar~~~~~~-----~PilGIN~G~ 106 (306)
T PRK03372 78 VLGGDG---TIL----RAAELARAAD-----VPVLGVNLGH 106 (306)
T ss_pred EEcCCH---HHH----HHHHHhccCC-----CcEEEEecCC
Confidence 999944 221 2233333345 9999999884
No 147
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.65 E-value=1.7 Score=39.91 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--------hhhHHHhcccCCEEEECCCCCCCh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--------~~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
.|||..++.. ....-++..+.+|+++.|..+.+...... ........+.+|.+|.-||-.
T Consensus 7 ~i~iv~~~~~---------~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG--- 74 (292)
T PRK03378 7 CIGIVGHPRH---------PTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG--- 74 (292)
T ss_pred EEEEEEeCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH---
Confidence 5899988753 22344556688899999988766432110 001122234589999999944
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.+. ...+.+...+ +||+||-.|-
T Consensus 75 T~L----~aa~~~~~~~-----~Pilgin~G~ 97 (292)
T PRK03378 75 NML----GAARVLARYD-----IKVIGINRGN 97 (292)
T ss_pred HHH----HHHHHhcCCC-----CeEEEEECCC
Confidence 221 2223332335 9999999987
No 148
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.56 E-value=2.5 Score=38.99 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-------------hhhHHHhcccCCEEEECCC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-------------~~~l~~~l~~~dGlilpGG 128 (263)
.|||..++.. ....-++..+.+|+++.|..+..-..... ........+.+|.+|.-||
T Consensus 7 ~i~ii~~~~~---------~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 77 (296)
T PRK04539 7 NIGIVTRPNT---------PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG 77 (296)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC
Confidence 4899988753 22334456688899999988876432111 0001122235899999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 129 ~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
-. .+. ...+.+...+ +||+||-.|.
T Consensus 78 DG---T~L----~aa~~~~~~~-----~PilGIN~G~ 102 (296)
T PRK04539 78 DG---TFL----SVAREIAPRA-----VPIIGINQGH 102 (296)
T ss_pred cH---HHH----HHHHHhcccC-----CCEEEEecCC
Confidence 44 222 2222222345 9999999986
No 149
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.43 E-value=1.7 Score=39.93 Aligned_cols=83 Identities=19% Similarity=0.073 Sum_probs=49.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-----------h---hHHHhcccCCEEEECC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------D---VLFEKLELVNGVLYTG 127 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-----------~---~l~~~l~~~dGlilpG 127 (263)
.|||..++.. ....-+...+.+|+++.|..+.+....... . ......+.+|-+|.-|
T Consensus 2 ~igii~~~~~---------~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lG 72 (292)
T PRK01911 2 KIAIFGQTYQ---------ESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIG 72 (292)
T ss_pred EEEEEeCCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEEC
Confidence 3889887743 223445567888999999888764321100 0 0122223589999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 128 G~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
|-. .+. ...+.+...+ +|||||-.|.
T Consensus 73 GDG---T~L----~aa~~~~~~~-----~PilGIN~G~ 98 (292)
T PRK01911 73 GDG---TFL----RTATYVGNSN-----IPILGINTGR 98 (292)
T ss_pred CcH---HHH----HHHHHhcCCC-----CCEEEEecCC
Confidence 944 222 2233332345 9999999885
No 150
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.95 E-value=2 Score=39.77 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=49.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-----------------hhHHHhcccCCEEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEKLELVNGVL 124 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-----------------~~l~~~l~~~dGli 124 (263)
.|||..++.. ....-++..+.+|+++.|..++........ .......+.+|-+|
T Consensus 3 ~igiv~n~~~---------~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi 73 (305)
T PRK02649 3 KAGIIYNDGK---------PLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAI 73 (305)
T ss_pred EEEEEEcCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEE
Confidence 4888887743 223445667888999999888664321000 00122223589999
Q ss_pred ECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.-||-. .+. ...+.+...+ +|||||-.|.
T Consensus 74 ~iGGDG---TlL----~aar~~~~~~-----iPilGIN~G~ 102 (305)
T PRK02649 74 VLGGDG---TVL----SAARQLAPCG-----IPLLTINTGH 102 (305)
T ss_pred EEeCcH---HHH----HHHHHhcCCC-----CcEEEEeCCC
Confidence 999944 222 2333333345 9999998873
No 151
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=2.2 Score=37.72 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=27.5
Q ss_pred ccCCEEEECCCCCCChhhHHH----H-HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc
Q 024713 118 ELVNGVLYTGGWAKDGLYYAI----V-EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~~~~----~-~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
+.--.+|+|||.+. .|-+. . ..+.++. +++ --.||||-|- ++|+.
T Consensus 48 ~~T~lLV~pGGaDl--pY~~~l~g~g~a~i~~yv-k~G-----G~fLGiCAG~-----YFg~~ 97 (253)
T COG4285 48 ETTLLLVFPGGADL--PYVQVLQGLGTARIKNYV-KEG-----GNFLGICAGG-----YFGSA 97 (253)
T ss_pred hceEEEEecCCCCc--hHHHHhcchhhhhHHHHH-hcC-----CeEEEEeccc-----cccce
Confidence 34578999999884 12221 1 2344444 445 5689999886 56654
No 152
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.23 E-value=3.5 Score=37.87 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=49.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-----hhHHHhcccCCEEEECCCCCCChhhH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----DVLFEKLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-----~~l~~~l~~~dGlilpGG~~~~~~~~ 136 (263)
.|||..++.. ...-+...+.+|+++.|..+.+-...... ....+..+.+|.+|.-||-. .+.
T Consensus 12 ~i~ii~~~~~----------~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG---T~L 78 (287)
T PRK14077 12 KIGLVTRPNV----------SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG---TLI 78 (287)
T ss_pred EEEEEeCCcH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH---HHH
Confidence 5999988752 12334556788999999887664321110 01112223689999999944 221
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 137 ~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
...+.+...+ +|||||-.|.
T Consensus 79 ----~aa~~~~~~~-----~PilGIN~G~ 98 (287)
T PRK14077 79 ----SLCRKAAEYD-----KFVLGIHAGH 98 (287)
T ss_pred ----HHHHHhcCCC-----CcEEEEeCCC
Confidence 2233333345 9999999886
No 153
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=85.67 E-value=2.3 Score=40.49 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=34.1
Q ss_pred cccCCEEEECCCCCCChhhHHH----HHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~~~~----~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
..+++.+|+|||.+. .|.+. ..+.|+..++.+ .-.||||-|.-+-..
T Consensus 47 ~~~~~LlV~PGG~d~--~y~~~l~~~g~~~Ir~fV~~G-----G~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 47 QSKCALLVMPGGADL--PYCRSLNGEGNRRIRQFVENG-----GGYLGICAGAYYASS 97 (367)
T ss_pred ccCCcEEEECCCcch--HHHHhhChHHHHHHHHHHHcC-----CcEEEECcchhhhcc
Confidence 457899999999873 23222 246778888887 889999999855443
No 154
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=84.52 E-value=4.1 Score=37.41 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=49.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh--------hhHHHhcccCCEEEECCCCCCCh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--------DVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~--------~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
.|||..++.. ....-+...+.+++++.|..+......... ....+..+.+|.+|.-||-.
T Consensus 7 ~v~iv~~~~~---------~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 74 (291)
T PRK02155 7 TVALIGRYQT---------PGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG--- 74 (291)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH---
Confidence 5999987753 223445667888999999886654321100 01122223578998888844
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.+ .+.++.+...+ +|+|||=.|.
T Consensus 75 t~----l~~~~~~~~~~-----~pilGIn~G~ 97 (291)
T PRK02155 75 TM----LGIGRQLAPYG-----VPLIGINHGR 97 (291)
T ss_pred HH----HHHHHHhcCCC-----CCEEEEcCCC
Confidence 22 22333332345 9999999886
No 155
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=84.46 E-value=4.3 Score=32.65 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=54.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC------------------hhhHHHhcccCCEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------------EDVLFEKLELVNGV 123 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~------------------~~~l~~~l~~~dGl 123 (263)
+++|.+.++. ......+++.+.+.+++.|+++..+....- .+.+.+.+..+|+|
T Consensus 3 ilii~gS~r~--------~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 3 ILIINGSPRK--------NSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEESSSST--------TSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEECcCCC--------CCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeE
Confidence 4566666642 234566777777888888999988876541 12234456789999
Q ss_pred EECCCCCCChhhHHHHHHHHHHHH-HhCCCCCcceEEeccch
Q 024713 124 LYTGGWAKDGLYYAIVEKVFKKIL-EKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 124 ilpGG~~~~~~~~~~~~~li~~a~-~~~d~g~~~PILGIClG 164 (263)
|+-- |.....+....+.+++++. .....-..||+..|+.|
T Consensus 75 I~~s-P~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 75 IFAS-PVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEEE-EEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EEee-cEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 8732 1111222234556666664 11112233899888755
No 156
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=84.32 E-value=7.4 Score=37.53 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=44.5
Q ss_pred CCCCCcEEEEeCCCCCCC-CC-CCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHH----HhcccCCEEEECCC
Q 024713 56 KLNYRPVIGIVTHPGDGA-SG-RLNNATNASYIAASYVKFVESAGARVIPLIYNE-PEDVLF----EKLELVNGVLYTGG 128 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~-~~-~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~----~~l~~~dGlilpGG 128 (263)
....||.|||.+.-..-- .+ .+..++-.......+...+++.|++++....-. +++.+. +.++.+|-||.+||
T Consensus 172 ~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG 251 (404)
T COG0303 172 KVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGG 251 (404)
T ss_pred EEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCC
Confidence 456889999986442211 11 122222222222234458999999887665433 334443 34456899999999
Q ss_pred CCC
Q 024713 129 WAK 131 (263)
Q Consensus 129 ~~~ 131 (263)
-++
T Consensus 252 ~Sv 254 (404)
T COG0303 252 VSV 254 (404)
T ss_pred ccC
Confidence 875
No 157
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=82.65 E-value=5.6 Score=34.25 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-----------------------hhhHHHhcc
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------------------EDVLFEKLE 118 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-----------------------~~~l~~~l~ 118 (263)
+++|+..|.. ..+..-+.....+.+++.|+++..+..... .+++.+.+.
T Consensus 3 i~~I~gs~r~--------~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~ 74 (207)
T COG0655 3 ILGINGSPRS--------NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLL 74 (207)
T ss_pred eeEEEecCCC--------CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHH
Confidence 5778877753 134666777788999999999988876531 234444567
Q ss_pred cCCEEEEC
Q 024713 119 LVNGVLYT 126 (263)
Q Consensus 119 ~~dGlilp 126 (263)
.+|||||.
T Consensus 75 ~aD~iI~g 82 (207)
T COG0655 75 EADGIIFG 82 (207)
T ss_pred HCCEEEEe
Confidence 79999884
No 158
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.37 E-value=4.9 Score=37.01 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=50.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--------hhhHHHhcccCCEEEECCCCCCCh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------EDVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--------~~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
.|||..++.. ....-+...+.+++++.|..+.+...... ........+.+|-||.-||-.
T Consensus 6 ~v~iv~~~~k---------~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 73 (295)
T PRK01231 6 NIGLIGRLGS---------SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG--- 73 (295)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH---
Confidence 5899988753 23455667788999999988776542210 000111223578888888843
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.. ....+.+...+ +||+||-.|.
T Consensus 74 t~----l~~~~~~~~~~-----~Pvlgin~G~ 96 (295)
T PRK01231 74 SL----LGAARALARHN-----VPVLGINRGR 96 (295)
T ss_pred HH----HHHHHHhcCCC-----CCEEEEeCCc
Confidence 22 22333333345 9999999885
No 159
>PRK01215 competence damage-inducible protein A; Provisional
Probab=81.45 E-value=6.8 Score=35.51 Aligned_cols=68 Identities=25% Similarity=0.224 Sum_probs=39.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhH----HHhcccCCEEEECCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVL----FEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l----~~~l~~~dGlilpGG~~~ 131 (263)
++|.++|++.-..-..|... +.+..|++ +.+++.|+++.... ...+.+.+ ...++.+|-||++||-..
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~-dtn~~~l~----~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTV-NTNASWIA----RRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred CCCEEEEEEEChhccCCeEE-EhhHHHHH----HHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 57899997644322222221 22333443 57999999875443 23334433 334556899999999663
No 160
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=80.73 E-value=7.8 Score=32.38 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHHhc------ccCCEEEECCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFEKL------ELVNGVLYTGGWAK 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~~l------~~~dGlilpGG~~~ 131 (263)
.+|.+||++.-.... .. .+.+..+ +..++++.|+++..... ..+.+.+.+.+ +.+|-||.+||-..
T Consensus 3 ~~~rv~vit~~d~~~--~~-~d~n~~~----l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 3 IPLRIAILTVSDTRT--EE-DDTSGQY----LVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred CccEEEEEEEeCcCC--cc-CCCcHHH----HHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 468899976443211 11 1122223 33578999998765433 23444443322 35899999999765
No 161
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=78.47 E-value=22 Score=30.80 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhc--ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l--~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
..+.....+.+++.|..+.+...+.. .+.+.+.+ .++||||+.+... +. ..++++.+.+ +|+.
T Consensus 26 ~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~-~~-------~~~~~~~~~~-----ipvV 91 (275)
T cd06295 26 LSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHD-QD-------PLPERLAETG-----LPFV 91 (275)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCC-Ch-------HHHHHHHhCC-----CCEE
Confidence 33445567788889998877655432 22333323 4799999976532 11 2345555566 7764
No 162
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.25 E-value=4.5 Score=32.99 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=26.6
Q ss_pred cccCCEEEECCCCCCC--hhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 117 LELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 117 l~~~dGlilpGG~~~~--~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
+.++|.|+|-||-++. ..-.+.+++++++ ..+ +|+.|+|
T Consensus 83 ~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee--~~~-----kkliGvC 123 (154)
T COG4090 83 LNSADVVVLLGGLAMPKIGVTPDDAKELLEE--LGN-----KKLIGVC 123 (154)
T ss_pred cccccEEEEEcccccCcCCCCHHHHHHHHHh--cCC-----CceEEee
Confidence 6679999999998741 1222345566663 234 8999999
No 163
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=77.75 E-value=13 Score=30.18 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEECCCCCC
Q 024713 89 SYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAK 131 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilpGG~~~ 131 (263)
.+..++++.|+++..... ..+.+.+. +.++.+|-||.+||-..
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 344689999998875543 33444443 33457899999999764
No 164
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=77.20 E-value=8.1 Score=38.31 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=47.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH-HcCCeEEEEecCCC-----------------hhhHHHhcccCCEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNEP-----------------EDVLFEKLELVNGV 123 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le-~~G~~~v~i~~~~~-----------------~~~l~~~l~~~dGl 123 (263)
.|||..++.. ....-+...+.+||+ ..|..+.+-+.... .+.+......+|.|
T Consensus 196 ~VgIV~n~~k---------~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlV 266 (508)
T PLN02935 196 TVLIITKPNS---------TSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLV 266 (508)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEE
Confidence 6899988753 223345566888998 47777765332100 01111122358999
Q ss_pred EECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 124 LYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 124 ilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
|.-||-+ .+. ...+.+...+ +|||||=+|
T Consensus 267 IsiGGDG---TlL----~Aar~~~~~~-----iPILGIN~G 295 (508)
T PLN02935 267 ITLGGDG---TVL----WAASMFKGPV-----PPVVPFSMG 295 (508)
T ss_pred EEECCcH---HHH----HHHHHhccCC-----CcEEEEeCC
Confidence 9999944 222 2223333344 999999977
No 165
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.16 E-value=8.1 Score=35.21 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=49.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC----hh--hHHHh-cccCCEEEECCCCCCChh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP----ED--VLFEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~----~~--~l~~~-l~~~dGlilpGG~~~~~~ 134 (263)
.|||..+++. ....-+.+.+.+|+++.|.++.+...... .. ..... .+.+|.+|.-||-. .
T Consensus 2 ~v~iv~~~~k---------~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---T 69 (277)
T PRK03708 2 RFGIVARRDK---------EEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG---T 69 (277)
T ss_pred EEEEEecCCC---------HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH---H
Confidence 3788887753 23444566788899999988877532110 00 00011 12589999999944 2
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+ .+.++ ....+ +||+||=.|.
T Consensus 70 l----L~a~~-~~~~~-----~pi~gIn~G~ 90 (277)
T PRK03708 70 I----LRIEH-KTKKD-----IPILGINMGT 90 (277)
T ss_pred H----HHHHH-hcCCC-----CeEEEEeCCC
Confidence 2 22333 23344 9999999886
No 166
>PRK06852 aldolase; Validated
Probab=76.12 E-value=25 Score=32.65 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC-----CChhhHHHhcccC--CEEEECCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-----EPEDVLFEKLELV--NGVLYTGGWAK 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~-----~~~~~l~~~l~~~--dGlilpGG~~~ 131 (263)
.-|+|...-..+.. ..+.....+|+. .++.-.++||.++-++|. .+.+...+..+.+ -.||+.||+..
T Consensus 167 GlPll~~~yprG~~----i~~~~~~~~ia~-aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 167 GLIAVLWIYPRGKA----VKDEKDPHLIAG-AAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred CCcEEEEeeccCcc----cCCCccHHHHHH-HHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 35877743322211 112233456663 456667799999999987 5556666666655 46899999885
No 167
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.97 E-value=8.8 Score=34.96 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCh--------hhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 88 ASYVKFVESAGARVIPLIYNEPE--------DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~--------~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
..+.+|+++.|..+..-...... ....+..+.+|.+|.-||-. .+. ...+.+...+ +|||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---T~L----~aa~~~~~~~-----~Pil 70 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG---NML----GRARVLAKYD-----IPLI 70 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH---HHH----HHHHHhccCC-----CcEE
Confidence 34677899999887764321100 01122233589999999944 221 2223222335 9999
Q ss_pred eccch
Q 024713 160 AHCLG 164 (263)
Q Consensus 160 GIClG 164 (263)
||=.|
T Consensus 71 gIn~G 75 (272)
T PRK02231 71 GINRG 75 (272)
T ss_pred EEeCC
Confidence 99987
No 168
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=75.60 E-value=3.2 Score=37.73 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCC---------------------------ChhhH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNE---------------------------PEDVL 113 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~---------------------------~~~~l 113 (263)
.|||..+|.. .....++..+++||++. |..+.. .... .....
T Consensus 1 kVgii~np~~---------~~~~~~~~~~~~~L~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (285)
T PF01513_consen 1 KVGIIANPNK---------PEAIELANELARWLLEKQGIEVLV-EGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALE 70 (285)
T ss_dssp -EEEEESSCG---------HCCCHHHHHHHHHHHHTTTEEEEE-EHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCH
T ss_pred CEEEEEcCCC---------HHHHHHHHHHHHHHHhCCCEEEEE-ChHHHHHHHHhccccccccccccccccccccchhhh
Confidence 4899999863 12345566788999988 544332 2110 00011
Q ss_pred HHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 114 FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 114 ~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
....+.+|.+|.-||-. +.....+.+...+ +||+||=.|-
T Consensus 71 ~~~~~~~D~ii~lGGDG-------T~L~~~~~~~~~~-----~Pilgin~G~ 110 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDG-------TFLRAARLFGDYD-----IPILGINTGT 110 (285)
T ss_dssp HHHCCCSSEEEEEESHH-------HHHHHHHHCTTST------EEEEEESSS
T ss_pred hhcccCCCEEEEECCCH-------HHHHHHHHhccCC-----CcEEeecCCC
Confidence 11246799999999933 2223333333334 9999998875
No 169
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=75.34 E-value=21 Score=30.53 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=51.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-C-------------hhhHHHhcccCCEEEECC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-------------EDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~-------------~~~l~~~l~~~dGlilpG 127 (263)
+++|.++|+.+ ....-+.+.+.+.+++.|.++..+.... + .+.+.+.+..+|+|||-
T Consensus 3 Il~I~GSpr~~--------S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~- 73 (191)
T PRK10569 3 VITLAGSPRFP--------SRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA- 73 (191)
T ss_pred EEEEEcCCCCC--------ChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE-
Confidence 67888888642 2345566667778888899888765421 1 11233456778998873
Q ss_pred CCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 128 G~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
-|.....+....+.+++++... .-..+|++=|+-|
T Consensus 74 tP~Y~~s~pg~LKn~iD~l~~~--~l~~K~v~iiat~ 108 (191)
T PRK10569 74 TPVYKASFSGALKTLLDLLPER--ALEHKVVLPLATG 108 (191)
T ss_pred CCccCCCCCHHHHHHHHhCChh--hhCCCEEEEEEec
Confidence 2222223333445555544211 1112788755543
No 170
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=75.34 E-value=20 Score=34.65 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=42.7
Q ss_pred CCCCCCCcEEEEeCCCCCCC-CCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEEC
Q 024713 54 DSKLNYRPVIGIVTHPGDGA-SGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYT 126 (263)
Q Consensus 54 ~~~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilp 126 (263)
.-....||.|||++.-.+-. .|. +..++-..-....+...+++.|+++..... ..+.+.+. ..++.+|-||.+
T Consensus 187 ~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItT 266 (419)
T PRK14690 187 RVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTS 266 (419)
T ss_pred eeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEc
Confidence 33556789999986432110 010 111211122222234578999998865432 33444443 334568999999
Q ss_pred CCCCC
Q 024713 127 GGWAK 131 (263)
Q Consensus 127 GG~~~ 131 (263)
||-..
T Consensus 267 GG~S~ 271 (419)
T PRK14690 267 GGASA 271 (419)
T ss_pred CCccC
Confidence 99765
No 171
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=75.15 E-value=24 Score=30.34 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHh-----cccCCEEEECCCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGGW 129 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-----l~~~dGlilpGG~ 129 (263)
...+.....+++++.|..+.+.....+.+...+. -.++|||++.+..
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 14 FARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3444556778888899988877654433322221 2368999998764
No 172
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.50 E-value=12 Score=37.64 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=50.0
Q ss_pred CCc-EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-h----h-H--HHhcccCCEEEECCCC
Q 024713 59 YRP-VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-D----V-L--FEKLELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~P-vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-~----~-l--~~~l~~~dGlilpGG~ 129 (263)
.+| .|||..++.. ....-+...+.+|+++.|..+.+-...... . . . ...++.+|.+|.-||-
T Consensus 288 ~~~~~i~iv~~~~~---------~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD 358 (569)
T PRK14076 288 IKPTKFGIVSRIDN---------EEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD 358 (569)
T ss_pred cCCcEEEEEcCCCC---------HHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc
Confidence 445 4999988753 223444566788999999877664321100 0 0 0 0113357999999994
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 130 ~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
. .+. ...+.+...+ +|||||-.|-
T Consensus 359 G---T~L----~aa~~~~~~~-----~PilGin~G~ 382 (569)
T PRK14076 359 G---TVL----RASKLVNGEE-----IPIICINMGT 382 (569)
T ss_pred H---HHH----HHHHHhcCCC-----CCEEEEcCCC
Confidence 4 222 2222222345 9999999885
No 173
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=74.48 E-value=10 Score=41.19 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC---ChhhHHHhccc-----CCEEEECCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE---PEDVLFEKLEL-----VNGVLYTGGW 129 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~---~~~~l~~~l~~-----~dGlilpGG~ 129 (263)
..+|+|||+.....-. .....++. .+++.||+.|+.|+++.... ..+.+...+.. +|.||-.-+.
T Consensus 69 ~~~P~VgIlfyrs~~~------~g~~~~vd-aLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWL------SGNTAVVD-ALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCCEEEEEeehhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 4799999998665422 12345554 68999999999999887542 23345554544 8988876665
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCCcceEE-eccchhHHHH
Q 024713 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLY-AHCLGFELLT 169 (263)
Q Consensus 130 ~~~~~~~~~~~~li~~a~~~~d~g~~~PIL-GIClG~QlL~ 169 (263)
.....-.....++++ +.| +||| +|..-.|-..
T Consensus 142 ~l~~~~~~~~~~~L~---~Ln-----VPVlq~i~~~~~t~e 174 (1098)
T PF02514_consen 142 SLGGGPAGGAIELLK---ELN-----VPVLQAITLYYQTRE 174 (1098)
T ss_pred ccCCCCcchhHHHHH---HCC-----CCEEEeeccCCCCHH
Confidence 421110011223443 457 9998 5555333333
No 174
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=73.90 E-value=12 Score=28.53 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
+.+.++. ...++++-+...-.+......+.+|||+||...++ ++++.+.+.+ +||+.+=..
T Consensus 34 ~~~~~~~--~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~-------~v~~la~~~~-----i~vi~t~~d 94 (105)
T PF07085_consen 34 FLEYLKP--GDLVITPGDREDIQLAAIEAGIACIILTGGLEPSE-------EVLELAKELG-----IPVISTPYD 94 (105)
T ss_dssp HHHCHHT--TEEEEEETT-HHHHHHHCCTTECEEEEETT----H-------HHHHHHHHHT------EEEE-SS-
T ss_pred HHhhcCC--CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCH-------HHHHHHHHCC-----CEEEEECCC
Confidence 4445554 34555555543222333445679999999976433 5777887888 999876443
No 175
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=73.34 E-value=25 Score=30.01 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
.-+...+.+.+++.|..+.......+.+. ++.. -.++||+|+.+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~ 65 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT 65 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44555677888889998877654433322 2222 2468999998653
No 176
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=73.23 E-value=16 Score=36.64 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHH----hcccCCE
Q 024713 50 CPVPDSKLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLELVNG 122 (263)
Q Consensus 50 ~~~~~~~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~~dG 122 (263)
|.-..-....||.|||++.=..- ..|. +..++-.......+..++++.|+++..... ..+.+.+.+ .++++|-
T Consensus 169 ~Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~Dl 248 (546)
T PRK14497 169 LGISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADV 248 (546)
T ss_pred CCCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCE
Confidence 33344456789999997643211 0111 112222222222233568999998765532 344555543 3456899
Q ss_pred EEECCCCCC
Q 024713 123 VLYTGGWAK 131 (263)
Q Consensus 123 lilpGG~~~ 131 (263)
||++||-+.
T Consensus 249 VIttGGtS~ 257 (546)
T PRK14497 249 LILTGGTSA 257 (546)
T ss_pred EEEcCCccC
Confidence 999999764
No 177
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=73.23 E-value=23 Score=30.42 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=53.6
Q ss_pred HHHHHHH-HcCCeEEEEecCCChhhH-HHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh-
Q 024713 89 SYVKFVE-SAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF- 165 (263)
Q Consensus 89 s~v~~le-~~G~~~v~i~~~~~~~~l-~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~- 165 (263)
.+.+.++ ..|.+++... +.+.+ .+.|+++|.||+..... ..+....++.++..++++ ++++|+..+.
T Consensus 23 ~l~~ll~~~~~~~v~~~~---~~~~~~~~~L~~~Dvvv~~~~~~--~~l~~~~~~al~~~v~~G-----gglv~lH~~~~ 92 (217)
T PF06283_consen 23 ALAQLLEESEGFEVTVTE---DPDDLTPENLKGYDVVVFYNTGG--DELTDEQRAALRDYVENG-----GGLVGLHGAAT 92 (217)
T ss_dssp HHHHHHHHTTCEEEEECC---SGGCTSHHCHCT-SEEEEE-SSC--CGS-HHHHHHHHHHHHTT------EEEEEGGGGG
T ss_pred HHHHHhccCCCEEEEEEe---CcccCChhHhcCCCEEEEECCCC--CcCCHHHHHHHHHHHHcC-----CCEEEEccccc
Confidence 3455666 4566665542 22222 23478999999987753 113333445566666788 9999998443
Q ss_pred ------HHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhh
Q 024713 166 ------ELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKL 211 (263)
Q Consensus 166 ------QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~ 211 (263)
......+||.. ..+....+........ ++++.+++|+++
T Consensus 93 ~~~~~~~~~~~l~Gg~f------~~h~~~~~~~v~~~~~-~HPi~~gl~~~f 137 (217)
T PF06283_consen 93 DSFPDWPEYNELLGGYF------KGHPPPQPFTVRVEDP-DHPITRGLPESF 137 (217)
T ss_dssp CCHTT-HHHHHHHS--S------EEEECEEEEEEEESST-TSCCCTTS-SEE
T ss_pred ccchhHHHHHHeeCccc------cCCCCCceEEEEEcCC-CChhhcCCCCCc
Confidence 12233456541 1111222333322223 688999997654
No 178
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=73.02 E-value=9.9 Score=31.13 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=26.8
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~ 105 (263)
....||+|||.+...-.. +.-|. ...+||+++|+..+...
T Consensus 87 ~~~~k~vIgvVTK~DLae---------d~dI~-~~~~~L~eaGa~~IF~~ 126 (148)
T COG4917 87 DIGVKKVIGVVTKADLAE---------DADIS-LVKRWLREAGAEPIFET 126 (148)
T ss_pred cccccceEEEEecccccc---------hHhHH-HHHHHHHHcCCcceEEE
Confidence 445788999999774311 33343 25679999998876543
No 179
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.88 E-value=37 Score=29.35 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHhc-ccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l-~~~dGlilpGG~ 129 (263)
.-+...+.+.+++.|..++......+.+ .++... .++||||+.++.
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 15 AQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3345567788889999887665433332 122222 368999998763
No 180
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=71.92 E-value=22 Score=34.28 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=42.3
Q ss_pred CCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHHh----cccCCEEEECCC
Q 024713 56 KLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFEK----LELVNGVLYTGG 128 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~~----l~~~dGlilpGG 128 (263)
....||.|||++.-..- ..+. +..++-.......+..++++.|++++.... ..+.+.+.+. .+.+|-||.+||
T Consensus 173 ~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG 252 (411)
T PRK10680 173 PVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGG 252 (411)
T ss_pred EecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCC
Confidence 45678999998642110 0011 111221121222234578999998765543 3444545433 346899999999
Q ss_pred CCCC
Q 024713 129 WAKD 132 (263)
Q Consensus 129 ~~~~ 132 (263)
-...
T Consensus 253 ~S~G 256 (411)
T PRK10680 253 VSVG 256 (411)
T ss_pred CCCC
Confidence 7753
No 181
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=71.46 E-value=15 Score=35.10 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=43.7
Q ss_pred CCCCCCCcEEEEeCCCCCCC-CC-CCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEEC
Q 024713 54 DSKLNYRPVIGIVTHPGDGA-SG-RLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYT 126 (263)
Q Consensus 54 ~~~~~~~PvIGI~~~~~~~~-~~-~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilp 126 (263)
.-.+..+|.|||++.-..-. .| .+..++........+..++++.|+++..... ..+.+.+. +.++.+|-||.+
T Consensus 162 ~v~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dliitt 241 (394)
T cd00887 162 EVPVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITS 241 (394)
T ss_pred EEEEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEe
Confidence 33456789999986532211 01 0111222222222344578899998876543 33444443 334568999999
Q ss_pred CCCCCC
Q 024713 127 GGWAKD 132 (263)
Q Consensus 127 GG~~~~ 132 (263)
||-...
T Consensus 242 GG~s~g 247 (394)
T cd00887 242 GGVSVG 247 (394)
T ss_pred CCCCCC
Confidence 997753
No 182
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=71.37 E-value=24 Score=28.82 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHcCCeEEEEec-CCChhhHHH----hcc--cCCEEEECCCCCC
Q 024713 90 YVKFVESAGARVIPLIY-NEPEDVLFE----KLE--LVNGVLYTGGWAK 131 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~--~~dGlilpGG~~~ 131 (263)
+.+++++.|+++..... ..+.+.+.+ .++ .+|-||.+||-..
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 34579999998765442 334454443 334 6899999999764
No 183
>PLN02929 NADH kinase
Probab=71.05 E-value=9.6 Score=35.31 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
....++|++.|.++..+.-. ++...+..+|.||.-||-. .+. ...+.+ ..+ +||+||-.|
T Consensus 37 ~~~~~~L~~~gi~~~~v~r~----~~~~~~~~~Dlvi~lGGDG---T~L----~aa~~~-~~~-----iPvlGIN~G 96 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLRN----ELSQPIRDVDLVVAVGGDG---TLL----QASHFL-DDS-----IPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHcCCEEEEeecc----ccccccCCCCEEEEECCcH---HHH----HHHHHc-CCC-----CcEEEEECC
Confidence 45678999999988554321 1123356789999999954 221 222223 344 999999998
No 184
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=70.97 E-value=28 Score=29.81 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
+...+.+.+++.|..+.......+.+. ++..+ .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 345677888999998877665433221 22222 369999998754
No 185
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=70.69 E-value=33 Score=29.48 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChh----hHHHhcc-cCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPED----VLFEKLE-LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l~-~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
+.....+.+++.|..+++.....+.+ .+...++ ++||+++.|... .+ ..++.+.+++ +|+..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-~~-------~~~~~l~~~~-----iPvv~ 83 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH-SP-------ALLDLLARRG-----VPYVA 83 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CH-------HHHHHHHhCC-----CCEEE
Confidence 44567788899998887754333322 1222233 589999976532 11 2344555566 88765
Q ss_pred c
Q 024713 161 H 161 (263)
Q Consensus 161 I 161 (263)
+
T Consensus 84 ~ 84 (268)
T cd06273 84 T 84 (268)
T ss_pred E
Confidence 4
No 186
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=70.55 E-value=52 Score=30.18 Aligned_cols=61 Identities=8% Similarity=-0.158 Sum_probs=35.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC--CChhh----HHHh-cccCCEEEECCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~-l~~~dGlilpGG 128 (263)
.-.||++..... ......+.....+.+++.|..+.+.... .+.+. ++.. -.++||||+.+.
T Consensus 46 t~~Igvv~p~~~--------~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~ 113 (343)
T PRK10936 46 AWKLCALYPHLK--------DSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV 113 (343)
T ss_pred CeEEEEEecCCC--------chHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 468898874321 1123334556777888899888776432 12221 1111 235899999764
No 187
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=70.17 E-value=25 Score=30.11 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=43.0
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
..+.++..|++++...++ +.+.+.+.++.+|.|++.-+... +......+.+++++.+.+
T Consensus 36 ~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~~~-~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 36 RAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPPSH-PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp HHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSCSC-CCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCcch-hhhhhhhhhHHHhhhccc
Confidence 456788899998877765 56778888999999999888653 333444567888888877
No 188
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=69.69 E-value=37 Score=29.19 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
+-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.++.. . .....++++.+++ +|+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~--~----~~~~~i~~~~~~~-----ipv 83 (273)
T cd06305 15 QAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA--E----VLKPWVKRALDAG-----IPV 83 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh--h----hhHHHHHHHHHcC-----CCE
Confidence 34455677889999998877644333221 1111 23699999976422 1 1123455665666 776
Q ss_pred Ee
Q 024713 159 YA 160 (263)
Q Consensus 159 LG 160 (263)
..
T Consensus 84 V~ 85 (273)
T cd06305 84 VA 85 (273)
T ss_pred EE
Confidence 53
No 189
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=69.31 E-value=8.4 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCC
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA 130 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~ 130 (263)
.+.++|++.|.+++.+.... .++.+|++|++|...
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQDT 46 (80)
T ss_pred HHHHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCCc
Confidence 46679999999998875322 267899999999864
No 190
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=68.53 E-value=45 Score=28.53 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
.+...+.+++++.|..+..+....+.+. ++..+ .++||||+.+..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 16 SLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3445677888999998887765433321 22222 268999998764
No 191
>PLN02727 NAD kinase
Probab=67.89 E-value=16 Score=38.86 Aligned_cols=82 Identities=15% Similarity=0.029 Sum_probs=47.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCCCh---------------hhHHHhcccCCEEEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPE---------------DVLFEKLELVNGVLY 125 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~~~---------------~~l~~~l~~~dGlil 125 (263)
.|||+..+.+ ........+++||.+. |.++.+-+..... ....+..+.+|.||.
T Consensus 680 tVgIV~K~~~----------ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv 749 (986)
T PLN02727 680 TVLLLKKLGQ----------ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC 749 (986)
T ss_pred EEEEEcCCcH----------HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEE
Confidence 6899988753 1234455678899987 8776542211100 001122235899999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 126 TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 126 pGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
-||-+ .+. ...+.+...+ +|||||=+|.
T Consensus 750 LGGDG---TlL----rAar~~~~~~-----iPILGINlGr 777 (986)
T PLN02727 750 LGGDG---VIL----HASNLFRGAV-----PPVVSFNLGS 777 (986)
T ss_pred ECCcH---HHH----HHHHHhcCCC-----CCEEEEeCCC
Confidence 99944 222 2223333345 9999999885
No 192
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=67.50 E-value=25 Score=30.34 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=41.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe---EEEEecCCChhhH----HHhcc--cCCEEEECCCCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR---VIPLIYNEPEDVL----FEKLE--LVNGVLYTGGWA 130 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~---~v~i~~~~~~~~l----~~~l~--~~dGlilpGG~~ 130 (263)
++.++|++--.....|...+ ....+ +..++++.|+. +.......+.+.+ .+.++ .+|-||.+||-.
T Consensus 3 ~~~~aIItvSd~~~~G~i~D-~ng~~----L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 3 TLKIGLVSISDRASSGVYED-KGIPA----LEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred CcEEEEEEEcCcCCCCceee-chHHH----HHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 46788876443222222211 22223 33578888643 2222222344433 33343 689999999977
Q ss_pred CChhhHHHHHHHHHHHHHhC
Q 024713 131 KDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 131 ~~~~~~~~~~~li~~a~~~~ 150 (263)
..+. +...+.++.+.++.
T Consensus 78 ~g~r--DvTpeAv~~l~~ke 95 (193)
T PRK09417 78 PARR--DVTPEATLAVADKE 95 (193)
T ss_pred CCCC--CcHHHHHHHHhCCc
Confidence 5332 11234555554433
No 193
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=67.22 E-value=40 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
.-+...+.+.+++.|..++......+.+. ++..+ .++||||+.+..
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 65 (267)
T cd06283 15 SLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTG 65 (267)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCC
Confidence 34455677888899988876654433322 12222 368999997753
No 194
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.89 E-value=40 Score=29.19 Aligned_cols=46 Identities=9% Similarity=-0.049 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
...+...+.+.+++.|..+.......+.+. ++.. -.++||||+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 344556677888999998876654333321 1111 236899999764
No 195
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.84 E-value=59 Score=27.95 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
..-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 14 FPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556678889999999877664433221 1221 236899999764
No 196
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=66.30 E-value=22 Score=28.28 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEECCCCCCC
Q 024713 90 YVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAKD 132 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilpGG~~~~ 132 (263)
+.+++++.|+++..... ..+.+.+. +.++++|-||.+||-...
T Consensus 24 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 24 LEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 44579999988765532 33444443 344568999999997653
No 197
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=66.15 E-value=45 Score=28.55 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
..-+.....+++++.|..+.+.....+.+. +... -.++||||+.+..
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (268)
T cd06298 14 FAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK 65 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 344555677888899998877655433321 2222 2368999998653
No 198
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=65.89 E-value=60 Score=29.71 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=50.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG~~~~~ 133 (263)
.++.||++..-.+ ....+-+...+.+.+++.|..+.+.....+.+.. ...+ .++||||+.+... .
T Consensus 24 ~~~~Ig~i~~~~~--------~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~--~ 93 (330)
T PRK10355 24 KEVKIGMAIDDLR--------LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG--Q 93 (330)
T ss_pred CCceEEEEecCCC--------chHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--h
Confidence 5789999884321 1223445557888889999988876554333222 2222 2799999986421 0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
...+.++.+.+++ +|+.-+
T Consensus 94 ----~~~~~l~~~~~~~-----iPvV~i 112 (330)
T PRK10355 94 ----VLSNVIKEAKQEG-----IKVLAY 112 (330)
T ss_pred ----hHHHHHHHHHHCC-----CeEEEE
Confidence 0123455555666 787755
No 199
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.78 E-value=20 Score=33.05 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---hhH-HHhcccCCEEEECCCCCCChhhHH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVL-FEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---~~l-~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
.|++..+++. .....+...+.+++++.|..+.+....... +.. ....+.+|.+|.-||-. .+
T Consensus 5 kv~lI~n~~~---------~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG---T~-- 70 (305)
T PRK02645 5 QVIIAYKAGS---------SQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG---TV-- 70 (305)
T ss_pred EEEEEEeCCC---------HHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH---HH--
Confidence 4777776642 122334556788999999987765432111 000 11123578888888843 22
Q ss_pred HHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 138 IVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 138 ~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
.+..+.....+ +|++||=.
T Consensus 71 --l~~~~~~~~~~-----~pv~gin~ 89 (305)
T PRK02645 71 --LAAARHLAPHD-----IPILSVNV 89 (305)
T ss_pred --HHHHHHhccCC-----CCEEEEec
Confidence 23333333445 99999987
No 200
>PRK03094 hypothetical protein; Provisional
Probab=65.32 E-value=12 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCC
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA 130 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~ 130 (263)
.+.++|++.|..|+.+....+ .+.+|++|++|-..
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~~-------~~~~Da~VitG~d~ 46 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQD-------AQGCDCCVVTGQDS 46 (80)
T ss_pred HHHHHHHHCCCEEEecCcccc-------cCCcCEEEEeCCCc
Confidence 356799999999988753221 46799999999753
No 201
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=65.21 E-value=14 Score=29.38 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=26.7
Q ss_pred HHHHHHHcCCeEEEEe-cCCChhhHH----HhcccCCEEEECCCCCC
Q 024713 90 YVKFVESAGARVIPLI-YNEPEDVLF----EKLELVNGVLYTGGWAK 131 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~~dGlilpGG~~~ 131 (263)
+.+++++.|+++.... ...+.+.+. +.++.+|-||.+||-..
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 3458999998764332 223444443 33456899999999764
No 202
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=65.20 E-value=56 Score=27.95 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHhc--ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l--~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
...+.....+++++.|..+.+...+...+ .+.+.+ .++||||+.+..... ...++.+.+.+ +
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-------~~~~~~~~~~~-----i 81 (270)
T cd01545 14 VSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDN-------PELLDLLDEAG-----V 81 (270)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCc-------cHHHHHHHhcC-----C
Confidence 34455567788889999888776543222 122222 368999998764211 12445555556 7
Q ss_pred eEEe
Q 024713 157 PLYA 160 (263)
Q Consensus 157 PILG 160 (263)
|+.-
T Consensus 82 pvv~ 85 (270)
T cd01545 82 PYVR 85 (270)
T ss_pred CEEE
Confidence 7653
No 203
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=64.35 E-value=17 Score=34.10 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=33.8
Q ss_pred ccCCEEEECCCCCCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+|-|++.||..... .-......+++.+...+ .++-|||-|.-+|+.+
T Consensus 75 ~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G-----~~l~gictGaf~LA~a 124 (328)
T COG4977 75 PPIDILPVCGGLGPERPVNAPALLAWLRRAARRG-----ARLGGLCTGAFVLAEA 124 (328)
T ss_pred CcceEEEEecCCCcccccchHHHHHHHHHHHhcC-----CeEEEehHhHHHHHHh
Confidence 3477777766654221 11122346777777777 9999999999999986
No 204
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=64.30 E-value=54 Score=33.32 Aligned_cols=43 Identities=21% Similarity=0.083 Sum_probs=27.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL 104 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i 104 (263)
..||.|||.+...+...+ .....-+.....+.++++|+.+...
T Consensus 62 ~~kP~IgIvns~~d~~p~----h~hl~~~~~~vk~~i~~aGg~~~~~ 104 (601)
T TIGR01196 62 MKRPNLAIITAYNDMLSA----HQPFKNYPDLIKKALQEANAVAQVA 104 (601)
T ss_pred cCCCEEEEEeccccCccc----cccHHHHHHHHHHHHHHCCCEeEEe
Confidence 579999999877654321 1222333444556778888877766
No 205
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=64.22 E-value=44 Score=28.91 Aligned_cols=46 Identities=9% Similarity=-0.112 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~ 129 (263)
.-+..+..++.++.|..++......+.+.- ... -+++||||+.+..
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV 65 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 345567788889999988876544333221 222 2358999997653
No 206
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=64.06 E-value=54 Score=27.55 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcce
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
...+.....+++++.|..+++...+.+.+. +...+ .++|||++.+.... . .. ++++.+++ +|
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~--~-----~~-~~~~~~~~-----ip 80 (264)
T cd06267 14 FAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLD--D-----EL-LEELAALG-----IP 80 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcc--h-----HH-HHHHHHcC-----CC
Confidence 344556677788888988887766544322 22222 36899999877541 1 01 45555566 77
Q ss_pred EEec
Q 024713 158 LYAH 161 (263)
Q Consensus 158 ILGI 161 (263)
+..+
T Consensus 81 vv~~ 84 (264)
T cd06267 81 VVLV 84 (264)
T ss_pred EEEe
Confidence 7654
No 207
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=63.53 E-value=57 Score=27.77 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
+.....+.+++.|..++......+.+. +... -.++||||+.++..... ..++.+.+++ +|+..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-------~~~~~~~~~~-----ipvV~ 84 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATS-------PALDLLDAER-----VPYVL 84 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCch-------HHHHHHhhCC-----CCEEE
Confidence 445677788889999887754433221 1121 13689999976532111 2445555566 77654
Q ss_pred c
Q 024713 161 H 161 (263)
Q Consensus 161 I 161 (263)
+
T Consensus 85 ~ 85 (266)
T cd06282 85 A 85 (266)
T ss_pred E
Confidence 4
No 208
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=63.07 E-value=80 Score=27.86 Aligned_cols=62 Identities=10% Similarity=-0.035 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG 128 (263)
.+-+||++..... .....-+...+.+.+++.|..++......+.+.. +... .++||+|+.+.
T Consensus 25 ~~~~I~vi~~~~~--------~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 25 AKDTIALVVSTLN--------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred cCCeEEEEecCCC--------ChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3458998873211 1223445556778889999988776443333222 2212 36899999764
No 209
>PRK05569 flavodoxin; Provisional
Probab=62.65 E-value=62 Score=25.51 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=43.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH--HHHHHHHHHHHHhCCCCCcceE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~--~~~~~li~~a~~~~d~g~~~PI 158 (263)
.+...++..+.+-+++.|+.+.+.+..... .. .+..+|+|+|-- |.....+. ...+.+++......-+|...=+
T Consensus 13 GnT~~iA~~i~~~~~~~g~~v~~~~~~~~~--~~-~~~~~d~iilgs-Pty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~ 88 (141)
T PRK05569 13 GNVEVLANTIADGAKEAGAEVTIKHVADAK--VE-DVLEADAVAFGS-PSMDNNNIEQEEMAPFLDQFKLTPNENKKCIL 88 (141)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEECCcCC--HH-HHhhCCEEEEEC-CCcCCCcCChHHHHHHHHHhhccCcCCCEEEE
Confidence 457888888888888899888777654321 11 356789988743 22111110 1234566554322223444555
Q ss_pred Eecc
Q 024713 159 YAHC 162 (263)
Q Consensus 159 LGIC 162 (263)
+|.|
T Consensus 89 f~t~ 92 (141)
T PRK05569 89 FGSY 92 (141)
T ss_pred EeCC
Confidence 6655
No 210
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.45 E-value=25 Score=31.84 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=41.5
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHH
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKV 142 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~l 142 (263)
|||..+.. ....-++..+.++++..|..+ + .+++|.+|.-||-. . +
T Consensus 3 i~Ii~~~~----------~~~~~~~~~l~~~l~~~g~~~-----~---------~~~~Dlvi~iGGDG---T-------~ 48 (265)
T PRK04885 3 VAIISNGD----------PKSKRVASKLKKYLKDFGFIL-----D---------EKNPDIVISVGGDG---T-------L 48 (265)
T ss_pred EEEEeCCC----------HHHHHHHHHHHHHHHHcCCcc-----C---------CcCCCEEEEECCcH---H-------H
Confidence 78876632 123345666788898888762 1 13579999999944 2 3
Q ss_pred HHHHHHhCCCCCcceEEeccchh
Q 024713 143 FKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 143 i~~a~~~~d~g~~~PILGIClG~ 165 (263)
++.+....+.-..+|++||-.|.
T Consensus 49 L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 49 LSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred HHHHHHhcccCCCCeEEEEeCCC
Confidence 33332211100129999999885
No 211
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.45 E-value=52 Score=28.99 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.-+...+.+.+++.|..+.+.....+.+.. ... -.++||||+.+... + ....+++.+.+.+ +||
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-~-----~~~~~l~~l~~~~-----ipv 83 (288)
T cd01538 15 IRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDG-E-----ALASAVEKAADAG-----IPV 83 (288)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-h-----hHHHHHHHHHHCC-----CCE
Confidence 344556777888899998877654333322 111 23699999976422 1 1124556665666 787
Q ss_pred Eec
Q 024713 159 YAH 161 (263)
Q Consensus 159 LGI 161 (263)
..+
T Consensus 84 V~~ 86 (288)
T cd01538 84 IAY 86 (288)
T ss_pred EEE
Confidence 654
No 212
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.36 E-value=59 Score=27.87 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
.-+...+.+.+++.|.++.+.....+.+. +... -.++||+|+.+.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 15 IELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 33455677788889988876654333221 1111 236999999764
No 213
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=62.30 E-value=45 Score=28.01 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=26.8
Q ss_pred HHHHHHcCCeEEEEec-CCChhhH----HHhcccCCEEEECCCCCC
Q 024713 91 VKFVESAGARVIPLIY-NEPEDVL----FEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 91 v~~le~~G~~~v~i~~-~~~~~~l----~~~l~~~dGlilpGG~~~ 131 (263)
.+++++.|+.+..+.. ..+.+.+ .+.++.+|-||.+||-..
T Consensus 25 ~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 25 AKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGP 70 (170)
T ss_pred HHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 3579999998764432 2334433 334457899999999764
No 214
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=62.18 E-value=75 Score=27.05 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhc--ccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dGlilpGG~ 129 (263)
.-+.....+.+++.|..+.....+...+ .+.+.+ .++||+|+.+..
T Consensus 19 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3344567778888998887765443322 223333 359999998754
No 215
>PRK09054 phosphogluconate dehydratase; Validated
Probab=62.08 E-value=49 Score=33.64 Aligned_cols=43 Identities=28% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL 104 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i 104 (263)
..||.|||.+...+-..+ .....-+..-..+.++++|+.+...
T Consensus 63 ~~kP~IgIvns~nd~~p~----h~~l~~~~~~vk~~v~~aGg~~~~~ 105 (603)
T PRK09054 63 MTRPNIGIVTAYNDMLSA----HQPYEHYPDIIKEAAREAGAVAQVA 105 (603)
T ss_pred cCCCEEEEEeccccCcCc----cccHHHHHHHHHHHHHHcCCcccee
Confidence 479999999877653321 1222333444556778888766655
No 216
>PRK06756 flavodoxin; Provisional
Probab=61.71 E-value=82 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=30.5
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEEC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilp 126 (263)
.+...++..+.+.+++.|..+.++....... . ..+..+|+|+|-
T Consensus 13 GnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-~-~~~~~~d~vi~g 56 (148)
T PRK06756 13 GNTEEMADHIAGVIRETENEIEVIDIMDSPE-A-SILEQYDGIILG 56 (148)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEeehhccCC-H-HHHhcCCeEEEE
Confidence 4577888888889998998887766543211 1 225678998875
No 217
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=61.61 E-value=33 Score=31.87 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=41.9
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHH----hccc-CCEEEECCCCC
Q 024713 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLEL-VNGVLYTGGWA 130 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~~-~dGlilpGG~~ 130 (263)
...+|.+||++.-.....|+. .+-....+..++++.|+++..... ..+.+.+.+ .+++ +|-||++||-.
T Consensus 156 v~r~~rv~II~TG~Ev~~G~i-----~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 156 PFRPLRVGLIVTGSEVYGGRI-----EDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred ecCCCEEEEEEcCCcCCCCcE-----EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 356799999875432222222 111122344689999998765432 334444433 3344 89999999987
Q ss_pred CCh
Q 024713 131 KDG 133 (263)
Q Consensus 131 ~~~ 133 (263)
.++
T Consensus 231 vg~ 233 (312)
T cd03522 231 VDP 233 (312)
T ss_pred cCC
Confidence 644
No 218
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.60 E-value=67 Score=27.44 Aligned_cols=71 Identities=8% Similarity=-0.022 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEE-ecCCChhhH----HH-hcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 83 ASYIAASYVKFVESAGARVIPL-IYNEPEDVL----FE-KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i-~~~~~~~~l----~~-~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
...+.....++.++.|..+..+ +...+.+.- +. .-+++||||+...... . ...+++++.+++ +
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~--~----~~~~l~~~~~~g-----I 81 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD--S----LAPFLEKAKAAG-----I 81 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT--T----THHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH--H----HHHHHHHHhhcC-----c
Confidence 3445566778889999998885 544443322 11 2336899998876441 1 125778888888 9
Q ss_pred eEEeccch
Q 024713 157 PLYAHCLG 164 (263)
Q Consensus 157 PILGIClG 164 (263)
||.-+=.+
T Consensus 82 pvv~~d~~ 89 (257)
T PF13407_consen 82 PVVTVDSD 89 (257)
T ss_dssp EEEEESST
T ss_pred eEEEEecc
Confidence 99876444
No 219
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.34 E-value=26 Score=31.91 Aligned_cols=75 Identities=13% Similarity=0.229 Sum_probs=43.7
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-h----hHHHhcccCCEEEECCCCCCChhhHH
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-D----VLFEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-~----~l~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
|||..++.. ....-+...+.+|+ +.|..++.-...... . .. ... .+|.+|.-||-.
T Consensus 3 i~iv~~~~~---------~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~D~vi~lGGDG------- 63 (271)
T PRK01185 3 VAFVIRKDC---------KRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDI-EEI-NADVIITIGGDG------- 63 (271)
T ss_pred EEEEecCCC---------HHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcc-ccc-CCCEEEEEcCcH-------
Confidence 888887743 11233345577788 468776553211100 0 00 112 589999999954
Q ss_pred HHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 138 IVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 138 ~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
.+++.+.... .||+||-.|
T Consensus 64 ---T~L~a~~~~~-----~PilGIN~G 82 (271)
T PRK01185 64 ---TILRTLQRAK-----GPILGINMG 82 (271)
T ss_pred ---HHHHHHHHcC-----CCEEEEECC
Confidence 2455554445 799999988
No 220
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=61.07 E-value=70 Score=26.79 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWA 130 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG~~ 130 (263)
..+...+.+++++.|...+.++...+.+.. ...+ .++||+|+.+...
T Consensus 15 ~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 344556778888899888877665443222 2222 3689999987643
No 221
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=60.82 E-value=36 Score=34.49 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHHH----hcccCCEEEEC
Q 024713 54 DSKLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYT 126 (263)
Q Consensus 54 ~~~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~~----~l~~~dGlilp 126 (263)
.-.+..||.|||++.-..- ..|. +..++-.......+..++++.|+++.... ...+.+.+.+ .++.+|-||.+
T Consensus 361 ~V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItt 440 (597)
T PRK14491 361 EVPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISS 440 (597)
T ss_pred eEEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEc
Confidence 3355678999998643211 0111 01111111112223457899999876543 2334444433 34568999999
Q ss_pred CCCCCC
Q 024713 127 GGWAKD 132 (263)
Q Consensus 127 GG~~~~ 132 (263)
||-...
T Consensus 441 GG~s~G 446 (597)
T PRK14491 441 GGVSVG 446 (597)
T ss_pred CCccCC
Confidence 997753
No 222
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=60.74 E-value=66 Score=24.97 Aligned_cols=79 Identities=19% Similarity=0.129 Sum_probs=43.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH-HHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY-AIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~-~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.+...++..+.+.++..|..+.++..+... .. .+..+|+|||-..--...... ...+.+++.....+-+|...=++
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~--~~-~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vf 86 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADAD--AE-DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALF 86 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCC--HH-HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEE
Confidence 456778888888898899888887765321 11 245689887743221111111 23345555543322244445566
Q ss_pred ecc
Q 024713 160 AHC 162 (263)
Q Consensus 160 GIC 162 (263)
|.|
T Consensus 87 gt~ 89 (140)
T TIGR01753 87 GSG 89 (140)
T ss_pred ecC
Confidence 654
No 223
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.29 E-value=66 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhHHH-hcccCCEEEECCCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVLFE-KLELVNGVLYTGGW 129 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~-~l~~~dGlilpGG~ 129 (263)
+.....+.+++.|..+.+.......+.+.. .-.++||+++.+..
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~ 66 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVP 66 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 444567788889998877654321222221 13468999998753
No 224
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=59.97 E-value=32 Score=34.85 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=42.1
Q ss_pred CCCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHH----HhcccCCEEEECCC
Q 024713 56 KLNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLELVNGVLYTGG 128 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~~dGlilpGG 128 (263)
....+|.|||++.-..- ..|. ...+.........+..++++.|++++... ...+.+.+. +.++.+|-||.+||
T Consensus 182 ~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG 261 (633)
T PRK14498 182 PVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGG 261 (633)
T ss_pred EEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCC
Confidence 45678999997543210 0010 11122112222234467999999886543 333444443 33456899999999
Q ss_pred CCC
Q 024713 129 WAK 131 (263)
Q Consensus 129 ~~~ 131 (263)
-..
T Consensus 262 ~s~ 264 (633)
T PRK14498 262 TSA 264 (633)
T ss_pred CcC
Confidence 765
No 225
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=59.75 E-value=70 Score=27.83 Aligned_cols=67 Identities=10% Similarity=-0.093 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.-+.....+.+++.|..+...... +.+.. ...+ .++||||+.+... . ....+++.+.+.+ +|+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~---~---~~~~~~~~~~~~~-----iPv 82 (289)
T cd01540 15 QTEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV---K---LGPAIVAKAKAYN-----MKV 82 (289)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch---h---hhHHHHHHHHhCC-----CeE
Confidence 344556778889999888766443 22211 1222 3589999986421 1 1224566666666 777
Q ss_pred Eecc
Q 024713 159 YAHC 162 (263)
Q Consensus 159 LGIC 162 (263)
..+.
T Consensus 83 V~~~ 86 (289)
T cd01540 83 VAVD 86 (289)
T ss_pred EEec
Confidence 6543
No 226
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=59.68 E-value=29 Score=38.50 Aligned_cols=99 Identities=20% Similarity=0.157 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-C-hhhHHHhc--------ccCCEEEE-CCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-EDVLFEKL--------ELVNGVLY-TGG 128 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~-~~~l~~~l--------~~~dGlil-pGG 128 (263)
+|+|||+.....-. ..+..++. .+++.||+.|..|+++.... + ...+.+.+ ..+|.||- +|.
T Consensus 253 ~p~Vgil~~r~~~~------~~d~~~~d-alI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~~vDaiI~~t~F 325 (1310)
T PRK12493 253 APTVGLLLQRTHLL------TGNDAHYV-ALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDTPLVDLVVSLTGF 325 (1310)
T ss_pred CCEEEEEEchhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCCCCccEEEEcCcc
Confidence 89999998665421 12345554 58899999999998875431 1 11121111 24788883 332
Q ss_pred CCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEe-ccchhHHHHHH
Q 024713 129 WAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMI 171 (263)
Q Consensus 129 ~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILG-IClG~QlL~~~ 171 (263)
.-. .|... ....-.+...+.| +|++- +-+-+|-+..-
T Consensus 326 ~l~ggpa~~-~~~~a~~~L~~ln-----VPvl~~~~l~~qt~~~W 364 (1310)
T PRK12493 326 ALVGGPARQ-DHPKAIEALKKLN-----RPYMVALPLVFQTTEEW 364 (1310)
T ss_pred cccCCcccC-cchhhHHHHHHCC-----CCEEEEEecCCCCHHHH
Confidence 111 11110 0111223333567 99985 55666776664
No 227
>PRK08227 autoinducer 2 aldolase; Validated
Probab=59.26 E-value=59 Score=29.54 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=50.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhccc-CCEEEECCCCCCChhhHH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLEL-VNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~-~dGlilpGG~~~~~~~~~ 137 (263)
.-|+|++. |..... . ....+|+. -.+.-.++||.++-++|.. +...+..+. .--||+.||+..+. .
T Consensus 140 G~Plla~~--prG~~~---~--~~~~~ia~-aaRiaaELGADiVK~~y~~--~~f~~vv~a~~vPVviaGG~k~~~---~ 206 (264)
T PRK08227 140 GMPVMAVT--AVGKDM---V--RDARYFSL-ATRIAAEMGAQIIKTYYVE--EGFERITAGCPVPIVIAGGKKLPE---R 206 (264)
T ss_pred CCcEEEEe--cCCCCc---C--chHHHHHH-HHHHHHHHcCCEEecCCCH--HHHHHHHHcCCCcEEEeCCCCCCH---H
Confidence 35999854 332111 1 12336653 4555677999999998864 444444443 35899999987522 2
Q ss_pred HHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 138 IVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 138 ~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
...+.++.+++.+ --|||.|
T Consensus 207 ~~L~~v~~ai~aG-------a~Gv~~G 226 (264)
T PRK08227 207 DALEMCYQAIDEG-------ASGVDMG 226 (264)
T ss_pred HHHHHHHHHHHcC-------Cceeeec
Confidence 2335556666666 5566655
No 228
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=59.05 E-value=94 Score=29.12 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=55.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhcccCCEEEECCCCCCChhhH
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l~~~dGlilpGG~~~~~~~~ 136 (263)
--.|||+-+|+.. +.....+.+.+..+..|..++........+ .......+.|.|++|=-. ...
T Consensus 159 ak~Igv~Y~p~E~---------ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn----~i~ 225 (322)
T COG2984 159 AKSIGVLYNPGEA---------NSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDN----LIV 225 (322)
T ss_pred CeeEEEEeCCCCc---------ccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecch----HHH
Confidence 3478999888652 244555678889999999998887643222 222334567888876332 223
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEe
Q 024713 137 AIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 137 ~~~~~li~~a~~~~d~g~~~PILG 160 (263)
...+.++..+.+++ +|+++
T Consensus 226 s~~~~l~~~a~~~k-----iPli~ 244 (322)
T COG2984 226 SAIESLLQVANKAK-----IPLIA 244 (322)
T ss_pred HHHHHHHHHHHHhC-----CCeec
Confidence 34467888998889 99985
No 229
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=59.01 E-value=84 Score=27.05 Aligned_cols=68 Identities=9% Similarity=0.093 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHc---CCe--EEEEecCCChhh----HHHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCC
Q 024713 83 ASYIAASYVKFVESA---GAR--VIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDA 152 (263)
Q Consensus 83 ~s~i~~s~v~~le~~---G~~--~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~ 152 (263)
.+-+...+.+.+++. |.. +++.....+.+. +... -+++||||+.+... . .....++.+.+++
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~----~~~~~l~~~~~~~-- 85 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASP--T----ALNPVIEEACEAG-- 85 (272)
T ss_pred HHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--h----hhHHHHHHHHHCC--
Confidence 344555667778888 874 344333222221 1221 23789999977532 1 1123556666667
Q ss_pred CCcceEEec
Q 024713 153 GDHFPLYAH 161 (263)
Q Consensus 153 g~~~PILGI 161 (263)
+|+..+
T Consensus 86 ---iPvv~~ 91 (272)
T cd06300 86 ---IPVVSF 91 (272)
T ss_pred ---CeEEEE
Confidence 888764
No 230
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.62 E-value=42 Score=30.45 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=43.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEK 141 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~ 141 (263)
.|||..++.. ...-++..+.+|+++.|..++.- .+.+|.++.-||-. .
T Consensus 4 ~i~iv~~~~~----------~a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGGDG---T------- 51 (264)
T PRK03501 4 NLFFFYKRDK----------ELVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGGDG---T------- 51 (264)
T ss_pred EEEEEECCCH----------HHHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECCcH---H-------
Confidence 6888876642 23345566778999999876531 13579999999944 2
Q ss_pred HHHHHHHhCCCCCcceEEeccc-h
Q 024713 142 VFKKILEKNDAGDHFPLYAHCL-G 164 (263)
Q Consensus 142 li~~a~~~~d~g~~~PILGICl-G 164 (263)
+++.+..... -+.+|++||-. |
T Consensus 52 ~L~a~~~~~~-~~~~pilgIn~~G 74 (264)
T PRK03501 52 FLQAVRKTGF-REDCLYAGISTKD 74 (264)
T ss_pred HHHHHHHhcc-cCCCeEEeEecCC
Confidence 3333322110 01289999999 6
No 231
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=57.56 E-value=85 Score=26.49 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
...+...+.+++++.|..++......+.+. +.+. -.++||||+.+..
T Consensus 14 ~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 14 WQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 445666677888889988887765433321 2221 2269999997653
No 232
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=57.32 E-value=1e+02 Score=27.67 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
..-+||++..... ....+.+...+.+.+++.|..+.......+.+. ++... .++||||+.++.
T Consensus 58 ~~~~i~vi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 125 (341)
T PRK10703 58 HTKSIGLLATSSE--------APYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSE 125 (341)
T ss_pred CCCeEEEEeCCCC--------CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3458998874321 122344455677788889988877654333222 22222 358999998763
No 233
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=57.25 E-value=81 Score=26.07 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=41.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-C-------------hhhHHHhcccCCEEEECC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-------------EDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~-------------~~~l~~~l~~~dGlilpG 127 (263)
+++|.++|+.+ ....-+.+.+++.+++.|.++..+.... + .+.+.+.+..+|+|||.-
T Consensus 2 il~I~gS~r~~--------S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~s 73 (171)
T TIGR03567 2 VLTLSGSPSTP--------SRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVAT 73 (171)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEEC
Confidence 56778887532 3345566667778888888776664321 1 122234456789998732
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 024713 128 GWAKDGLYYAIVEKVFKKI 146 (263)
Q Consensus 128 G~~~~~~~~~~~~~li~~a 146 (263)
|.....+....+.+++++
T Consensus 74 -P~Y~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 74 -PVYKASYSGVLKALLDLL 91 (171)
T ss_pred -CcccCCCCHHHHHHHHhC
Confidence 221122223345555554
No 234
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.12 E-value=73 Score=23.83 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCeEEEE--ecC--CChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc-
Q 024713 88 ASYVKFVESAGARVIPL--IYN--EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC- 162 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i--~~~--~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC- 162 (263)
..|.+.+++.|+..... .-. .....++..+.++|.||+.=+-. ++... ..+-+.+.+.+ +|+.=.=
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v-sH~~~---~~vk~~akk~~-----ip~~~~~~ 83 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV-SHNAM---WKVKKAAKKYG-----IPIIYSRS 83 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc-ChHHH---HHHHHHHHHcC-----CcEEEECC
Confidence 46888999999988877 111 12224777788999999876644 23322 24555666677 9987432
Q ss_pred chhHHHH
Q 024713 163 LGFELLT 169 (263)
Q Consensus 163 lG~QlL~ 169 (263)
.|..-|.
T Consensus 84 ~~~~~l~ 90 (97)
T PF10087_consen 84 RGVSSLE 90 (97)
T ss_pred CCHHHHH
Confidence 3444333
No 235
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=56.53 E-value=88 Score=27.76 Aligned_cols=46 Identities=7% Similarity=0.011 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHcCCeEEEE-ecCCChhh----HHHhc-ccCCEEEECCC
Q 024713 83 ASYIAASYVKFVESAGARVIPL-IYNEPEDV----LFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i-~~~~~~~~----l~~~l-~~~dGlilpGG 128 (263)
...+.....+.+++.|..+..+ +.+.+.+. +...+ .++||||+.+.
T Consensus 14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3445566777888899888765 33323221 22222 36899999754
No 236
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.49 E-value=54 Score=28.38 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCeE-EEEecCCChhhHHHhcccCCEEEECCC
Q 024713 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dGlilpGG 128 (263)
...+.+++.|.++ +.+...++.+.+..+++.+|.|++...
T Consensus 96 ~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV 136 (201)
T PF00834_consen 96 ETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSV 136 (201)
T ss_dssp HHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS
T ss_pred HHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEe
Confidence 4678899999987 456666778888888999999998553
No 237
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=56.08 E-value=77 Score=27.45 Aligned_cols=46 Identities=9% Similarity=-0.085 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhc--ccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dGlilpGG~ 129 (263)
.-+.....+.+++.|..+.+.....+.+ .+...+ .++||||+.+..
T Consensus 15 ~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (269)
T cd06297 15 RRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYD 65 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 3445567788888999888776543221 122212 359999998753
No 238
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=56.08 E-value=70 Score=32.19 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-----------------Chhh
Q 024713 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDV 112 (263)
Q Consensus 50 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-----------------~~~~ 112 (263)
|.-++..+ .||+|||.....+...+ ..+-.-+++...+.++++|+.+..++... ..+.
T Consensus 22 ~G~~~edl-~kP~IgI~ns~se~~Pc----h~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi~~g~~GM~ysL~sRel 96 (552)
T PRK00911 22 TGLTDEDF-DKPFIGIANSWNEITPC----NIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREV 96 (552)
T ss_pred cCCChHHh-cCCEEEEeccccccccc----hhhHHHHHHHHHHHHHHcCCEeEEeCCCccccccccCcccceehhhhHHH
Confidence 44444444 69999999877654321 23344455667778999999887765432 1111
Q ss_pred H----HHh--cccCCEEEECCCCCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 113 L----FEK--LELVNGVLYTGGWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 113 l----~~~--l~~~dGlilpGG~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
+ +.. ...+||+|+-+|=+. .| ..+-.+...| +|-.=+.=|-+
T Consensus 97 iA~~iE~~~~a~~~Dg~V~l~~CDK~~P-------g~lMaaarln-----iPsi~v~gGpm 145 (552)
T PRK00911 97 IADSIETVVNAHWFDGLVAIPGCDKNMP-------GMLMAAARLN-----VPSIFVYGGPI 145 (552)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCCcH-------HHHHHHHhcC-----CCEEEEeCCCc
Confidence 1 111 224788888888774 23 2344455667 77765554443
No 239
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.05 E-value=76 Score=27.17 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHhc-ccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l-~~~dGlilpGG 128 (263)
.-+.....+.+++.|..+.+...+.+.+ .++... .++||||+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 15 SEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 3344457778888999887766543332 122222 35899998764
No 240
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=55.88 E-value=91 Score=26.48 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG 128 (263)
.-+...+.+++++.|..+..+....+.+.. +... .++||+|+.+.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 334456778899999988776654433221 1222 36899999665
No 241
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=55.87 E-value=40 Score=37.18 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-C-hhhHHH-hc------ccCCEEEE-CCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-P-EDVLFE-KL------ELVNGVLY-TGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~-~~~l~~-~l------~~~dGlil-pGG 128 (263)
.+|+|||+....... ..+..++. .+++.||+.|..|+++.... + ...+.+ .+ ..+|.||= +|.
T Consensus 265 ~~p~Vgil~~r~~~~------~~~~~~id-alI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~~~~~~~~vDaiIn~tgF 337 (1220)
T PLN03069 265 DAPVVGLVLQRSHIV------TGDDGHYV-AVVMELEARGAKVVPIFAGGLDFSGPVERFFYDPITKKPIVDSVVSLTGF 337 (1220)
T ss_pred CCCEEEEEechhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccccchHHHHHHhhhcCCCCccEEEECCcc
Confidence 589999998664321 12345554 58899999999998875432 1 111111 11 24788883 332
Q ss_pred CCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEe-ccchhHHHHHH
Q 024713 129 WAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMI 171 (263)
Q Consensus 129 ~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILG-IClG~QlL~~~ 171 (263)
.-. .|.... ...-.+...+.| +|++- +-+-+|-+..-
T Consensus 338 ~L~ggpa~~~-~~~a~~~L~~ln-----VPvl~~~~l~~qt~e~W 376 (1220)
T PLN03069 338 ALVGGPARQD-HPKAIEALKKLD-----VPYLVALPLVFQTTEEW 376 (1220)
T ss_pred cccCCccccc-chhhHHHHHHCC-----CCEEEEEecCCCCHHHH
Confidence 211 111111 111223333567 99985 55666777665
No 242
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=55.64 E-value=83 Score=26.87 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhc-ccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l-~~~dGlilpGG~ 129 (263)
.-+...+.+++++.|..+.+.......+.++... .++||||+.+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 61 (261)
T cd06272 15 TELVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGES 61 (261)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCCC
Confidence 3344567778888998887765432222222222 369999988653
No 243
>PRK09271 flavodoxin; Provisional
Probab=55.63 E-value=1.1e+02 Score=24.93 Aligned_cols=46 Identities=17% Similarity=-0.070 Sum_probs=28.7
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhcccCCEEEECC
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~~~dGlilpG 127 (263)
+...++..+.+.++..|..+.+...... ...+...+..+|+|+|.-
T Consensus 13 nTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 13 NTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred hHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 4677888888899999987765544321 111122244678888754
No 244
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=55.30 E-value=80 Score=26.86 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.-+.....+.+++.|..++......+.+.. ... -.++||||+.+. . .+ ...+.++.+.+.+ +|+
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~-~-~~----~~~~~l~~l~~~~-----ipv 83 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPT-D-SD----AVVPAVKAANEAG-----IPV 83 (268)
T ss_pred HHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-C-hH----HHHHHHHHHHHCC-----CcE
Confidence 344456777888899888776543333221 111 236899999542 2 11 1123455555556 777
Q ss_pred Eec
Q 024713 159 YAH 161 (263)
Q Consensus 159 LGI 161 (263)
.-+
T Consensus 84 v~~ 86 (268)
T cd06323 84 FTI 86 (268)
T ss_pred EEE
Confidence 654
No 245
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.28 E-value=1e+02 Score=26.30 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhc--ccCCEEEECCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGG 128 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dGlilpGG 128 (263)
-+.....+++++.|..+.+...+.+.+ .+...+ .++||||+.+.
T Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 21 EVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 344456678888998887654432222 222323 24899999764
No 246
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=55.21 E-value=91 Score=26.75 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHH-cCCeEEEEecCCChh----hHHHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 83 ASYIAASYVKFVES-AGARVIPLIYNEPED----VLFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 83 ~s~i~~s~v~~le~-~G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
..-+.....+++++ .|..+++.....+.+ .++.. -.++||+|+.+... + ....+++.+.+.+ +
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~----~~~~~~~~l~~~~-----i 82 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT--A----ATAPIVKAANAAG-----I 82 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch--h----hhHHHHHHHHHCC-----C
Confidence 34455567778888 788777654332222 12222 22689999976432 1 1124556665666 7
Q ss_pred eEEe
Q 024713 157 PLYA 160 (263)
Q Consensus 157 PILG 160 (263)
|+..
T Consensus 83 Pvv~ 86 (272)
T cd06301 83 PLVY 86 (272)
T ss_pred eEEE
Confidence 7654
No 247
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=55.20 E-value=64 Score=27.45 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=37.8
Q ss_pred CchhhhHHHHHHHHHH-cCCeEEEEecCCC-hhhH----------------HHhcccCCEEEECCCCCCChhhHHHHHHH
Q 024713 81 TNASYIAASYVKFVES-AGARVIPLIYNEP-EDVL----------------FEKLELVNGVLYTGGWAKDGLYYAIVEKV 142 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~-~G~~~v~i~~~~~-~~~l----------------~~~l~~~dGlilpGG~~~~~~~~~~~~~l 142 (263)
.+..-+++.+.+.+++ .|+++.++..... +.++ .+.+..+|+|||-- |.....+....+.+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs-Pty~g~~~~~lk~f 91 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGT-PTRFGNMAGQMRNF 91 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEe-cccCCCchHHHHHH
Confidence 3466777778888988 8998887765321 1111 23467899987743 32222233334555
Q ss_pred HHHH
Q 024713 143 FKKI 146 (263)
Q Consensus 143 i~~a 146 (263)
+++.
T Consensus 92 ld~~ 95 (200)
T PRK03767 92 LDQT 95 (200)
T ss_pred HHHh
Confidence 5554
No 248
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.80 E-value=38 Score=30.39 Aligned_cols=60 Identities=15% Similarity=-0.009 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
-+...+.+++.+.|..+..... .+ .....+|.+|.-||-. . +++.+...+ +||+||-.|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~d~vi~iGGDG---T-------~L~a~~~~~-----~Pilgin~G 71 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEA---SA---SGKVTADLIIVVGGDG---T-------VLKAAKKVG-----TPLVGFKAG 71 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeecc---cc---cccCCCCEEEEECCcH---H-------HHHHHHHcC-----CCEEEEeCC
Confidence 3455677888888876654321 11 1234689999999954 2 333333336 999999988
Q ss_pred h
Q 024713 165 F 165 (263)
Q Consensus 165 ~ 165 (263)
.
T Consensus 72 ~ 72 (256)
T PRK14075 72 R 72 (256)
T ss_pred C
Confidence 5
No 249
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=54.59 E-value=1.4e+02 Score=26.87 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG~ 129 (263)
...+||++..... ......+...+.+++++.|..+.+.....+.+.. ...+ .++||||+.+..
T Consensus 63 ~~~~Igvv~~~~~--------~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 63 QSGVIGLIVRDLS--------APFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CCCEEEEEeCCCc--------cchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4468999874321 1223445556777888899877666543333221 1222 358999998764
No 250
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.42 E-value=85 Score=26.88 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhhH----HH-hcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDVL----FE-KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~-~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.+.....+++++.|..+++.....+.+.. .. .-.++||||+.+... +. ....++.+.+++ +|+.
T Consensus 17 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~----~~~~l~~~~~~~-----iPvV 85 (275)
T cd06317 17 TYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDG--QA----YIPGLRKAKQAG-----IPVV 85 (275)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCc--cc----cHHHHHHHHHCC-----CcEE
Confidence 34456777888899888776543332211 11 123689999976432 11 123445555666 7865
Q ss_pred ec
Q 024713 160 AH 161 (263)
Q Consensus 160 GI 161 (263)
-+
T Consensus 86 ~~ 87 (275)
T cd06317 86 IT 87 (275)
T ss_pred Ee
Confidence 43
No 251
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=54.32 E-value=21 Score=32.38 Aligned_cols=95 Identities=16% Similarity=0.261 Sum_probs=57.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEE-EEec----CCChhhHHHhcccCCEEEECCCCCC--Chh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVI-PLIY----NEPEDVLFEKLELVNGVLYTGGWAK--DGL 134 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v-~i~~----~~~~~~l~~~l~~~dGlilpGG~~~--~~~ 134 (263)
.|.|....+... --|-..|.+.+|..|+.-+ ++.. +.+.+.+...+++++||+|+||-.. -..
T Consensus 54 ~i~I~paas~ep----------~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~ 123 (293)
T COG4242 54 YIVIIPAASREP----------RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGS 123 (293)
T ss_pred EEEEEecCccCh----------hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeee
Confidence 677766554321 2233456778888887443 3322 1233455566889999999999752 111
Q ss_pred hHHH-HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 135 YYAI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 135 ~~~~-~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.++ ..+.++.....+ .-+-|+--|.-+|...
T Consensus 124 lkdTpl~~~ir~r~r~G-----~avgGTSAGAavM~~~ 156 (293)
T COG4242 124 LKDTPLMAAIRQRVRRG-----IAVGGTSAGAAVMSDH 156 (293)
T ss_pred ccCCHHHHHHHHHHhcC-----ceecccccchhhcCCc
Confidence 1111 224444444555 9999999999888764
No 252
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=54.14 E-value=59 Score=28.50 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCeEE-EEecCCChhhHHHhcccCCEEEECCC
Q 024713 89 SYVKFVESAGARVI-PLIYNEPEDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 89 s~v~~le~~G~~~v-~i~~~~~~~~l~~~l~~~dGlilpGG 128 (263)
...+++++.|.++- .+...++.+.+..+++.+|.|++.+.
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe
Confidence 46788999998874 45566778888888999999999543
No 253
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.01 E-value=93 Score=26.70 Aligned_cols=46 Identities=11% Similarity=-0.089 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecC--CChhh----HHHh-cccCCEEEECCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~-l~~~dGlilpGG 128 (263)
...+...+.+++++.|..+..+... .+.+. +... -.++||||+.+.
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3445566777888899988776432 22221 1111 236999999764
No 254
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.81 E-value=1.2e+02 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhH---HH-h-cccCCEEEECCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVL---FE-K-LELVNGVLYTGG 128 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l---~~-~-l~~~dGlilpGG 128 (263)
..-+...+.+.+++.|..++....+.+.+.. .. . -.++||||+.+.
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3444556778888899988777654332211 11 1 236999999774
No 255
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=53.53 E-value=1.1e+02 Score=28.96 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhHHHh-------------------------cccC----CEEEECCCCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-------------------------LELV----NGVLYTGGWAK 131 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-------------------------l~~~----dGlilpGG~~~ 131 (263)
++|+. -.+.-.++||.++-++|..+.+...+. .+.+ -.||+.||+..
T Consensus 217 d~Ia~-AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~ 292 (348)
T PRK09250 217 DLTGQ-ANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASK 292 (348)
T ss_pred HHHHH-HHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCC
Confidence 46653 344556689999999987654444333 3443 47999999875
No 256
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.25 E-value=1.2e+02 Score=26.03 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhH----HH-hcccCCEEEECCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FE-KLELVNGVLYTGG 128 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~-~l~~~dGlilpGG 128 (263)
+...+.+.+++.|..+++...+.+.+.. .. .-..+||||+.+-
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 17 MYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456777888899988765544333211 11 1236899999753
No 257
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=53.07 E-value=1.7e+02 Score=26.10 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=35.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
....||++..... + ....-+...+.+.+++.|..+++.....+.+. +... -.++||||+.+.
T Consensus 60 ~~~~Igvv~~~~~-------~-~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 60 RTRSIGLIIPDLE-------N-TSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CCceEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4468999874211 1 11233445566778889988877654333321 1111 236899999765
No 258
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.87 E-value=1.4e+02 Score=26.60 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChh----hHHHhcc---cCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcce
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPED----VLFEKLE---LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l~---~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
-+...+.+.+++.|..+++.....+.+ .+...+. ++||||+.+.... ....++.+.+++ +|
T Consensus 17 ~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~-------~~~~~~~~~~~g-----iP 84 (305)
T cd06324 17 SVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSV-------APELLRLAEGAG-----VK 84 (305)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccc-------hHHHHHHHHhCC-----Ce
Confidence 344456677888899887765443332 2223333 6999999764321 123455665666 77
Q ss_pred EEe
Q 024713 158 LYA 160 (263)
Q Consensus 158 ILG 160 (263)
|.-
T Consensus 85 vV~ 87 (305)
T cd06324 85 LFL 87 (305)
T ss_pred EEE
Confidence 653
No 259
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=52.72 E-value=44 Score=30.36 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=44.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHH-------HhcccCCEEEECCCCCCChh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF-------EKLELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~-------~~l~~~dGlilpGG~~~~~~ 134 (263)
.|||..++.. .....++..+.+++...+..+....- ..+.+. ...+.+|.++.-||.. .
T Consensus 2 ~~~i~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~d~ivvlGGDG---t 67 (281)
T COG0061 2 KVGIVGRPDK---------PEALKIAKRLYEFLKFKGVTVEVDQE--LAEELKDFADYVDDDEEKADLIVVLGGDG---T 67 (281)
T ss_pred eEEEEecCCc---------HHHHHHHHHHHHHHHhcCceEEEech--hhhhcccccccccccccCceEEEEeCCcH---H
Confidence 4788887753 12445566677888877766554321 111111 0113467777666644 1
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
.....+.+.+.+ +||+||=+|
T Consensus 68 ----lL~~~~~~~~~~-----~pilgin~G 88 (281)
T COG0061 68 ----LLRAARLLARLD-----IPVLGINLG 88 (281)
T ss_pred ----HHHHHHHhccCC-----CCEEEEeCC
Confidence 223334443444 999999999
No 260
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.91 E-value=1.2e+02 Score=26.08 Aligned_cols=66 Identities=5% Similarity=-0.110 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHc-----CCeEEEEecCCChhh----HHHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCC
Q 024713 85 YIAASYVKFVESA-----GARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGD 154 (263)
Q Consensus 85 ~i~~s~v~~le~~-----G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~ 154 (263)
-+.....+..++. |..+.......+.+. ++..+ .++||||+.+... + .....++.+.+++
T Consensus 16 ~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~--~----~~~~~i~~~~~~g---- 85 (274)
T cd06311 16 GIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFES--A----PLTQPVAKAKKAG---- 85 (274)
T ss_pred HHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc--h----hhHHHHHHHHHCC----
Confidence 3445566677775 566665544333322 22233 3699999976422 1 1224456666666
Q ss_pred cceEEec
Q 024713 155 HFPLYAH 161 (263)
Q Consensus 155 ~~PILGI 161 (263)
+||.-+
T Consensus 86 -IpvV~~ 91 (274)
T cd06311 86 -IFVVVV 91 (274)
T ss_pred -CeEEEE
Confidence 776543
No 261
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=51.86 E-value=99 Score=26.61 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHh-cccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPED----VLFEK-LELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG 128 (263)
..+.....+.+++.|..+.+.....+.+ .++.. -.++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 15 PSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3455566778888899887765433332 11121 236899999765
No 262
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=51.68 E-value=1.2e+02 Score=25.98 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCC--Chh----hHHHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcce
Q 024713 85 YIAASYVKFVESAGARVIPLIYNE--PED----VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~--~~~----~l~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
.+...+.+++++.|..+.+...+. +.+ .++..+ .++||||+.+... +. ....++.+.+++ +|
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~----~~~~~~~~~~~~-----iP 84 (275)
T cd06320 16 SLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISD--VN----LVPAVERAKKKG-----IP 84 (275)
T ss_pred HHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCCh--HH----hHHHHHHHHHCC-----Ce
Confidence 344456678888998887664321 221 122222 3699999865432 11 123455555667 88
Q ss_pred EEec
Q 024713 158 LYAH 161 (263)
Q Consensus 158 ILGI 161 (263)
+..+
T Consensus 85 vV~~ 88 (275)
T cd06320 85 VVNV 88 (275)
T ss_pred EEEE
Confidence 7655
No 263
>PRK07308 flavodoxin; Validated
Probab=51.60 E-value=1.2e+02 Score=24.10 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=43.3
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-hhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
+..-++..+.+.+++.|..+.+....... .. .+...|.|+| |-+... ..+......+++...+.+-.+...=++|
T Consensus 14 nTe~iA~~ia~~l~~~g~~~~~~~~~~~~--~~-~l~~~d~vi~-g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG 89 (146)
T PRK07308 14 NTEEIADIVADKLRELGHDVDVDECTTVD--AS-DFEDADIAIV-ATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVG 89 (146)
T ss_pred hHHHHHHHHHHHHHhCCCceEEEecccCC--Hh-HhccCCEEEE-EeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 45667777778888889877766554321 11 2567899998 555432 2233344566666543332343344555
Q ss_pred c
Q 024713 161 H 161 (263)
Q Consensus 161 I 161 (263)
.
T Consensus 90 ~ 90 (146)
T PRK07308 90 S 90 (146)
T ss_pred e
Confidence 5
No 264
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=51.45 E-value=75 Score=32.26 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=57.6
Q ss_pred CCCCCCCCC-CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC------------ChhhHH--
Q 024713 50 CPVPDSKLN-YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLF-- 114 (263)
Q Consensus 50 ~~~~~~~~~-~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~------------~~~~l~-- 114 (263)
|.-++..+. .||+|||.....+...+ ..+..-++....+.++++|+.+..++... +.|.+.
T Consensus 36 ~G~~~ed~~~~KP~IgI~ns~se~~Pc----h~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~ 111 (596)
T PRK13017 36 YGLTREELQSGKPIIGIAQTGSDLSPC----NRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLG 111 (596)
T ss_pred cCCChHHhccCCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHH
Confidence 444555654 79999998866543321 12333455567778999999887665422 122121
Q ss_pred --Hh--cccCCEEEECCCCCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 115 --EK--LELVNGVLYTGGWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 115 --~~--l~~~dGlilpGG~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
.. -..+||+|+-||=+. -| ..+-.+...| +|-+=++=|
T Consensus 112 iE~~~~a~~~Dg~V~i~gCDK~~P-------G~lMaaarln-----iP~i~v~GG 154 (596)
T PRK13017 112 LVEILYGYPLDGVVLTTGCDKTTP-------ACLMAAATVD-----LPAIVLSGG 154 (596)
T ss_pred HHHHHhcCCcceEEEeccCCCccH-------HHHHHHHhcC-----CCEEEEeCC
Confidence 11 224799999998774 23 2344455667 776644433
No 265
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.26 E-value=34 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=36.9
Q ss_pred ccCCEEEECCCCCCChhhHH------------HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcC
Q 024713 118 ELVNGVLYTGGWAKDGLYYA------------IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~~~------------~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG 174 (263)
+.+|.+|+|||........+ ....+.+.+.+.+ +|+-=||..--|+..++|-
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~ag-----KP~G~iCIaP~m~pki~g~ 147 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAG-----KPLGFMCIAPAMLPKIFGF 147 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhC-----CCceEEEecHHHHHHHcCC
Confidence 45799999999752111111 1235566666777 9999999999999998875
No 266
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.17 E-value=1.2e+02 Score=25.72 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChh---hHHHh-cccCCEEEECCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPED---VLFEK-LELVNGVLYTGG 128 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~-l~~~dGlilpGG 128 (263)
+...+.+.+++.|..+..+..+.+.+ .++.. -.++||||+.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 17 LLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 33456778899999888776553321 11121 246899999765
No 267
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=51.00 E-value=1.1e+02 Score=25.85 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=19.5
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCC
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNE 108 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~ 108 (263)
++..+.....+.|++.+-.+.++....
T Consensus 3 GD~~i~~~~~~~l~~~~~~~~~~~~~~ 29 (286)
T PF04230_consen 3 GDDLILEALLKLLKKHGPDAEIIIFSP 29 (286)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 467788889999999986655554443
No 268
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.90 E-value=1.4e+02 Score=25.69 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCC-ChhhHH----H-hcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 85 YIAASYVKFVESAGARVIPLIYNE-PEDVLF----E-KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~----~-~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
-+...+.+++++.|..+.+...+. +.+... . .-+++||+|+.+... . .....++.+.+++ +|+
T Consensus 17 ~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~----~~~~~l~~~~~~~-----ipv 85 (271)
T cd06312 17 VVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDP--D----ALDPAIKRAVAAG-----IPV 85 (271)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--H----HhHHHHHHHHHCC-----CeE
Confidence 344567778888998887765443 332221 1 123689999987422 1 1123556666667 888
Q ss_pred Eeccc
Q 024713 159 YAHCL 163 (263)
Q Consensus 159 LGICl 163 (263)
.-+-.
T Consensus 86 V~~~~ 90 (271)
T cd06312 86 ISFNA 90 (271)
T ss_pred EEeCC
Confidence 77643
No 269
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=50.89 E-value=64 Score=33.15 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=42.8
Q ss_pred CCCCCCCcEEEEeCCCCCCC-CCC--CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHH----hcc-cCCEEE
Q 024713 54 DSKLNYRPVIGIVTHPGDGA-SGR--LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----KLE-LVNGVL 124 (263)
Q Consensus 54 ~~~~~~~PvIGI~~~~~~~~-~~~--~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~l~-~~dGli 124 (263)
.-.+..||.|+|++.-..-. .+. +..++........+..++++.|+++..+.. ..+.+.+.+ .++ .+|-||
T Consensus 175 ~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvI 254 (659)
T PLN02699 175 MVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILL 254 (659)
T ss_pred eEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEE
Confidence 34566899999975422110 010 111221222222244579999998875542 344444443 233 589999
Q ss_pred ECCCCCC
Q 024713 125 YTGGWAK 131 (263)
Q Consensus 125 lpGG~~~ 131 (263)
.+||-..
T Consensus 255 tTGGts~ 261 (659)
T PLN02699 255 TSGGVSM 261 (659)
T ss_pred ECCCCCC
Confidence 9999775
No 270
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=50.63 E-value=1.3e+02 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.+.+.+++.|..++......+.+.- +.. -.++||||+.+... ......++++.+.+ +|+..+
T Consensus 19 ~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~------~~~~~~l~~~~~~~-----iPvV~~ 85 (302)
T TIGR02634 19 IFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG------QVLSNAVQEAKDEG-----IKVVAY 85 (302)
T ss_pred HHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------hHHHHHHHHHHHCC-----CeEEEe
Confidence 5667888899888776554333211 111 23589999976421 11224566666666 777543
No 271
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=50.35 E-value=1e+02 Score=30.97 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~ 106 (263)
.||+|||.....+...+ ..+..-++....+.++++|+.+..++.
T Consensus 10 ~kP~IgI~ns~~e~~pc----h~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 10 GKPFIGVANSYTTIVPG----HMHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred CCCEEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 59999999877654322 123333555677789999998887754
No 272
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.04 E-value=1.5e+02 Score=25.33 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHh-cccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPED----VLFEK-LELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG 128 (263)
..+.....+.+++.|..++......+.+ .+... -.++||+|+.+.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 15 QIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3345566777888998887765433322 12221 247999998654
No 273
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.71 E-value=1.1e+02 Score=25.30 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHhc--ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
++|+.+|++|+......++++.-... +.+|.|.+++=.. .+.....++++++.+++
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g---~h~~l~~~lve~lre~G 91 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG---GHLTLVPGLVEALREAG 91 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccc---hHHHHHHHHHHHHHHhC
Confidence 58999999999888777766664333 4689999887533 34445668888887766
No 274
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=49.52 E-value=83 Score=27.89 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCeE-EEEecCCChhhHHHhcccCCEEEECC
Q 024713 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
..++.+++.|+++ +.+...++.+.+...++.+|.|++..
T Consensus 100 r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMs 139 (220)
T COG0036 100 RTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMS 139 (220)
T ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEe
Confidence 4678899999887 55666778888899999999999843
No 275
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.48 E-value=1.6e+02 Score=25.22 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG 128 (263)
..+.....+.+++.|..+.+.....+.+.. +.. -.++||||+.+-
T Consensus 15 ~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 15 AELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 345556778889999988776543333211 111 235999999864
No 276
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.28 E-value=1.5e+02 Score=25.13 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG 128 (263)
..+.....++.++.|..+.......+.+. ++... .++||+|+.+.
T Consensus 15 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 15 AELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33444566788888988766543322221 12222 35899999875
No 277
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.26 E-value=1.2e+02 Score=26.08 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHH--cCCeEEEEecCCChhh----HHH-hcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 84 SYIAASYVKFVES--AGARVIPLIYNEPEDV----LFE-KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 84 s~i~~s~v~~le~--~G~~~v~i~~~~~~~~----l~~-~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
+-+.....+++++ .|..+.......+.+. ++. .-.++||||+.+... . .....++.+.+.+ +
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~--~----~~~~~i~~~~~~~-----i 83 (271)
T cd06321 15 VALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDS--K----GIAPAVKRAQAAG-----I 83 (271)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--h----HhHHHHHHHHHCC-----C
Confidence 3355567778888 5555544433333221 111 123689999975421 1 1123455555666 7
Q ss_pred eEEec
Q 024713 157 PLYAH 161 (263)
Q Consensus 157 PILGI 161 (263)
|+.-+
T Consensus 84 pvv~~ 88 (271)
T cd06321 84 VVVAV 88 (271)
T ss_pred eEEEe
Confidence 76644
No 278
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=49.17 E-value=74 Score=32.20 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC------------ChhhHH---
Q 024713 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLF--- 114 (263)
Q Consensus 50 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~------------~~~~l~--- 114 (263)
+.-++.....||+|||.....+...+ ..+-.-+++...+.++++|+.+..++... ..|.+.
T Consensus 32 ~G~~~~d~~~KP~IgI~ns~se~~Pc----h~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsi 107 (577)
T PRK13016 32 MGYAPEDFDGKPVIAILNTWSDANPC----HGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMET 107 (577)
T ss_pred cCCCHHHHhcCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHH
Confidence 44455555579999999877654332 23334456667778999999887664322 112111
Q ss_pred -H--hcccCCEEEECCCCCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 115 -E--KLELVNGVLYTGGWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 115 -~--~l~~~dGlilpGG~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
. .-..+||+|+-||=+. -| ..+-.+...| +|-.=++=|-
T Consensus 108 E~~~~a~~~Dg~V~l~~CDK~~P-------g~lMaaarln-----iPsI~v~GG~ 150 (577)
T PRK13016 108 EELIRSHPVDGAVLMGGCDKTTP-------GLVMGAISMG-----LPMIYLPAGP 150 (577)
T ss_pred HHHHhcCCccceEEeccCCCCcH-------HHHHHHHhcC-----CCEEEEecCC
Confidence 1 1224799998888774 23 2344455667 7777554443
No 279
>PRK06851 hypothetical protein; Provisional
Probab=49.13 E-value=57 Score=31.07 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~ 129 (263)
.+.++.|...|+. +.+-+...+.+.+.+.|.++...+...++ +++|+||||.=.
T Consensus 213 ~~~~~~i~G~pG~----------GKstl~~~i~~~a~~~G~~v~~~hC~~dP-------dslD~viIPel~ 266 (367)
T PRK06851 213 VKNRYFLKGRPGT----------GKSTMLKKIAKAAEERGFDVEVYHCGFDP-------DSLDMVIIPELN 266 (367)
T ss_pred cceEEEEeCCCCC----------cHHHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCcceEEeccCC
Confidence 3567888888864 35666667888888899999998876654 368999998743
No 280
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.76 E-value=1.6e+02 Score=24.99 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
.-+...+.+.+++.|..+.......+.+. ++... ..+||||+.+..
T Consensus 16 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 66 (269)
T cd06288 16 VEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATMY 66 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 33445677788889988877665433321 12222 258999998753
No 281
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=48.25 E-value=1.8e+02 Score=25.92 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG 128 (263)
..-.|||+..... + .....+.....+.+++.|..+.+.....+.+.. ... -.++||||+.+.
T Consensus 58 ~~~~Igvv~~~~~-------~-~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 58 RTTTVGVIIPDIS-------N-IYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCCEEEEEeCCCC-------c-hhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3458999874321 1 122334455667788889888776544332211 111 236899999764
No 282
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=48.24 E-value=1.6e+02 Score=26.37 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=35.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
....||++..... + ....-+.....+.+++.|..+.+.....+.+. +... -.++||||+.+.
T Consensus 62 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~ 128 (331)
T PRK14987 62 TSRAIGVLLPSLT-------N-QVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTER 128 (331)
T ss_pred CCCEEEEEeCCCc-------c-hhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3458999864321 1 12233445567788888988876654433221 1111 236899999753
No 283
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=47.85 E-value=1.5e+02 Score=27.30 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHH----Hh-cccCCEEEECC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF----EK-LELVNGVLYTG 127 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~-l~~~dGlilpG 127 (263)
..-+||++....+ + ....-+.....+.+++.|..+.+...+.+.+... .. -.++||||+.|
T Consensus 57 ~s~~Ig~i~p~~~-------~-~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 57 RTKTIGLVVPDIT-------N-PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCEEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4468999886332 1 2234455567788888999988877665433221 11 23699999999
No 284
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=47.59 E-value=93 Score=26.09 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=40.8
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHH--hCCCCCcceE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILE--KNDAGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~--~~d~g~~~PI 158 (263)
+.+..++..+.+.++. |..+.+++...... ..+..+|.|||-++- ....+......+++.... .+ +|+
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~---~~l~~yD~vIlGspi-~~G~~~~~~~~fl~~~~~~l~~-----K~v 81 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEE---PDLSDYDRVVIGASI-RYGHFHSALYKFVKKHATQLNQ-----MPS 81 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCc---cCHHHCCEEEEECcc-ccCCcCHHHHHHHHHHHHHhCC-----CeE
Confidence 3456677766677776 77777776543211 125678997775542 112222233344433221 23 777
Q ss_pred Eeccchh
Q 024713 159 YAHCLGF 165 (263)
Q Consensus 159 LGIClG~ 165 (263)
.-.|.|+
T Consensus 82 ~~F~v~l 88 (177)
T PRK11104 82 AFFSVNL 88 (177)
T ss_pred EEEEech
Confidence 7777663
No 285
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=47.56 E-value=1.2e+02 Score=26.04 Aligned_cols=66 Identities=8% Similarity=-0.021 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHc-CCeEEEEecCCChh----hHHHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 86 IAASYVKFVESA-GARVIPLIYNEPED----VLFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 86 i~~s~v~~le~~-G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
+.....+.+++. |..+.+.....+.+ .++.. -.++||||+.+... .. ....++.+.+.+ +|+.
T Consensus 17 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~---~~---~~~~~~~~~~~~-----ipvV 85 (270)
T cd06308 17 MNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA---AP---LTPVVEEAYRAG-----IPVI 85 (270)
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch---hh---chHHHHHHHHCC-----CCEE
Confidence 344566677775 77777654432222 12221 23689999986432 10 123445555566 7776
Q ss_pred ecc
Q 024713 160 AHC 162 (263)
Q Consensus 160 GIC 162 (263)
-+.
T Consensus 86 ~~~ 88 (270)
T cd06308 86 LLD 88 (270)
T ss_pred EeC
Confidence 543
No 286
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=47.52 E-value=45 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeE
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARV 101 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~ 101 (263)
..-.||||||.+..+-... ..-+. .-.++|+.+|++-
T Consensus 86 ~~f~~pvIGVITK~Dl~~~--------~~~i~-~a~~~L~~aG~~~ 122 (143)
T PF10662_consen 86 SMFNKPVIGVITKIDLPSD--------DANIE-RAKKWLKNAGVKE 122 (143)
T ss_pred cccCCCEEEEEECccCccc--------hhhHH-HHHHHHHHcCCCC
Confidence 3457999999998753210 12222 3457999999864
No 287
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=46.78 E-value=96 Score=24.25 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
...+.|++ |..+.... ..+.+++.+.++.+|+++..++...+.
T Consensus 10 ~~~~~l~~-~~~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~~~~~ 52 (133)
T PF00389_consen 10 EEIERLEE-GFEVEFCD-SPSEEELAERLKDADAIIVGSGTPLTA 52 (133)
T ss_dssp HHHHHHHH-TSEEEEES-SSSHHHHHHHHTTESEEEESTTSTBSH
T ss_pred HHHHHHHC-CceEEEeC-CCCHHHHHHHhCCCeEEEEcCCCCcCH
Confidence 34567777 77665555 556777777889999999877763333
No 288
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.92 E-value=1.5e+02 Score=25.99 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecC-CChh----hHHH-hcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYN-EPED----VLFE-KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~-~~~~----~l~~-~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
...+...+.+.+++.|..++.+... .+.+ .+.. .-.++||||+.+... . ...+.++.+.+++ +
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~--~----~~~~~i~~~~~~~-----i 82 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDP--V----STAAAYKKVAEAG-----I 82 (294)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc--h----hhhHHHHHHHHcC-----C
Confidence 3446666778889999888754222 2222 1222 123689999975321 1 1124556666667 8
Q ss_pred eEEe
Q 024713 157 PLYA 160 (263)
Q Consensus 157 PILG 160 (263)
|+..
T Consensus 83 PvV~ 86 (294)
T cd06316 83 KLVF 86 (294)
T ss_pred cEEE
Confidence 8754
No 289
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=45.90 E-value=49 Score=28.12 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCeEE-EEecCCChhhHH----Hhccc-CCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 89 SYVKFVESAGARVI-PLIYNEPEDVLF----EKLEL-VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 89 s~v~~le~~G~~~v-~i~~~~~~~~l~----~~l~~-~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
-++++|+++|.++. ..-...+.+.+. +.++. +|.||.+||-.+.+.- ...+.++..+++. +| |.-
T Consensus 31 ~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RD--vTpEA~~~~~dKe-----ip--GFg 101 (169)
T COG0521 31 LLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRD--VTPEATRPLFDKE-----IP--GFG 101 (169)
T ss_pred HHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCc--CCHHHHHHHHhcc-----CC--cHH
Confidence 35679999997762 111222333332 22233 8999999998753311 1123444455555 44 333
Q ss_pred chhHHHHHHHcCccccccc
Q 024713 163 LGFELLTMIISKDKNILES 181 (263)
Q Consensus 163 lG~QlL~~~~GG~~~~l~~ 181 (263)
-=|.++....+|...++.+
T Consensus 102 E~fR~~S~~~~g~~AiLSR 120 (169)
T COG0521 102 ELFRRLSLEEIGPTAILSR 120 (169)
T ss_pred HHHHHhhhhcCCCcEEEee
Confidence 3344444455343334443
No 290
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=45.84 E-value=1.1e+02 Score=31.06 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC------------ChhhHH---
Q 024713 50 CPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE------------PEDVLF--- 114 (263)
Q Consensus 50 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~------------~~~~l~--- 114 (263)
+.-++..+..||+|||.....+...+ ..+..-++....+.++++|+.+..++... +.|.+.
T Consensus 28 ~G~~~ed~~~kP~IgI~ns~se~~Pc----h~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsi 103 (571)
T PRK06131 28 QGYPDELFDGRPIIGICNTWSDLNPC----NAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDV 103 (571)
T ss_pred cCCChHHhccCCEEEEecccccCcCc----hhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHH
Confidence 44445555559999999877553322 23334455567778999999887665432 122111
Q ss_pred -H--hcccCCEEEECCCCCC
Q 024713 115 -E--KLELVNGVLYTGGWAK 131 (263)
Q Consensus 115 -~--~l~~~dGlilpGG~~~ 131 (263)
. .-..+||+|+-||=+.
T Consensus 104 E~~~~a~~~Dg~v~i~~CDK 123 (571)
T PRK06131 104 EEMIRGYPIDGVVLLGGCDK 123 (571)
T ss_pred HHHHhcCCcceEEEEeeCCC
Confidence 1 1224788888888774
No 291
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=45.80 E-value=58 Score=29.88 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.8
Q ss_pred hhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE----eccchhHHHHHHHcC
Q 024713 111 DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY----AHCLGFELLTMIISK 174 (263)
Q Consensus 111 ~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL----GIClG~QlL~~~~GG 174 (263)
+.++..+++.+.+|+-.|-.-+|.+.+...++++++.+++ +|+. |+=+=-|......+|
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~d-----vP~VIDaDGL~Lv~q~~e~l~~~ 155 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKD-----VPLVIDADGLWLVEQLPERLIGG 155 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCC-----CcEEEcCCceEehhhchhhhhcc
Confidence 3444568889999998887778888888889999999888 9997 444434444433444
No 292
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.74 E-value=1.3e+02 Score=26.35 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG 128 (263)
..-+...+.+.+++.|..+++...+...+.+. -.++||+|+.+.
T Consensus 22 ~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~ 65 (269)
T cd06287 22 MMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecC
Confidence 44566667788899999888876543323332 347999999764
No 293
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.48 E-value=73 Score=24.43 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=39.2
Q ss_pred hhhhHHHHH-HHHHHcCCeEEEEecCCChhhHH---HhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 83 ASYIAASYV-KFVESAGARVIPLIYNEPEDVLF---EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 83 ~s~i~~s~v-~~le~~G~~~v~i~~~~~~~~l~---~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.++..+.+. ..+...|..+..+... +... ..+.+=|-+|+-.-.... .+..+.++.+.+++ .|+
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~~d~vi~iS~sG~t----~~~~~~~~~a~~~g-----~~v 77 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPT---EALHGDLGMVTPGDVVIAISNSGET----DELLNLLPHLKRRG-----API 77 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccc---hhhccccCcCCCCCEEEEEeCCCCC----HHHHHHHHHHHHCC-----CeE
Confidence 444444444 4567778777655221 1111 123344666666544422 23446788888888 999
Q ss_pred Eeccc
Q 024713 159 YAHCL 163 (263)
Q Consensus 159 LGICl 163 (263)
++|+-
T Consensus 78 i~iT~ 82 (128)
T cd05014 78 IAITG 82 (128)
T ss_pred EEEeC
Confidence 99984
No 294
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=45.03 E-value=1.2e+02 Score=26.83 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCeE-EEEecCCChhhHHHhcccCCEEEECCC
Q 024713 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dGlilpGG 128 (263)
..++.++++|.++ +.+...++.+.+..++..+|.|++...
T Consensus 99 ~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV 139 (229)
T PRK09722 99 RLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTV 139 (229)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEE
Confidence 4668889999887 456666778888888999999998543
No 295
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=44.79 E-value=1.9e+02 Score=24.52 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCC-hh----hHHHhc-ccCCEEEECCCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEP-ED----VLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~-~~----~l~~~l-~~~dGlilpGG~ 129 (263)
.+.....+.+++.|..+++...+.. .+ .++... .++||+++.+..
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (264)
T cd01574 16 STLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPL 66 (264)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3445677788889988877654322 11 122222 369999997753
No 296
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=44.70 E-value=80 Score=34.86 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=53.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--ChhhHHHhc-----ccCCEEEE------
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL-----ELVNGVLY------ 125 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l-----~~~dGlil------ 125 (263)
.+|+|||+.....-- ..+..++. .+++.||+.|..|+++.... ....+.+.+ ..+|.||-
T Consensus 245 ~~p~Vgil~~r~~~~------~~d~~~~d-~lI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~vDaiI~~tgF~l 317 (1209)
T PRK13405 245 AKGTVGLLLMRSYVL------AGNTAHYD-GVIEALEARGLRVVPAFASGLDGRPAIEAYFMKDGRPTVDAVVSLTGFSL 317 (1209)
T ss_pred CCCeEEEEEehhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccchHHHHHHHhccCCCCccEEEEcCcccc
Confidence 489999997654321 12344554 58899999999988875431 111233322 24788883
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe-ccchhHHHHHH
Q 024713 126 TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMI 171 (263)
Q Consensus 126 pGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG-IClG~QlL~~~ 171 (263)
.||++.+.. ....++++ +.| +|++- +-+-+|-+..-
T Consensus 318 ~ggpa~~~~--~~a~~~L~---~ln-----VPvl~~~~l~~qt~~~W 354 (1209)
T PRK13405 318 VGGPAYNDS--AAAEEILA---RLD-----VPYLAAHPLEFQTLEQW 354 (1209)
T ss_pred cCCcccCcc--hhHHHHHH---HCC-----CCEEEEeecCCCCHHHH
Confidence 234331110 11223333 467 99985 44455666554
No 297
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=44.62 E-value=1.8e+02 Score=24.89 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChh----hHHHh-cccCCEEEECCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPED----VLFEK-LELVNGVLYTGG 128 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG 128 (263)
-+...+.+.+++.|..++......+.+ .++.. -.++||||+.+.
T Consensus 16 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 16 PLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 344567788899999888765433222 11221 236899999874
No 298
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=43.88 E-value=65 Score=28.95 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhHH----HhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVLF----EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~----~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
....+.+..++.|.+++.++.... +++. .+.++.|.++++.... .......+++.+.+.+ +|++|.
T Consensus 148 ~~~~~~~~a~~~g~~l~~~~v~~~-~~~~~~~~~l~~~~da~~~~~~~~----~~~~~~~i~~~~~~~~-----iPv~~~ 217 (294)
T PF04392_consen 148 QIEQLRKAAKKLGIELVEIPVPSS-EDLEQALEALAEKVDALYLLPDNL----VDSNFEAILQLANEAK-----IPVFGS 217 (294)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESSG-GGHHHHHHHHCTT-SEEEE-S-HH----HHHTHHHHHHHCCCTT-------EEES
T ss_pred HHHHHHHHHHHcCCEEEEEecCcH-hHHHHHHHHhhccCCEEEEECCcc----hHhHHHHHHHHHHhcC-----CCEEEC
Confidence 334566677778998887776543 3332 3345679998875432 2222334666665666 999986
Q ss_pred cc
Q 024713 162 CL 163 (263)
Q Consensus 162 Cl 163 (263)
--
T Consensus 218 ~~ 219 (294)
T PF04392_consen 218 SD 219 (294)
T ss_dssp SH
T ss_pred CH
Confidence 53
No 299
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.09 E-value=2.3e+02 Score=24.72 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhh----HHH-hcccCCEEEECCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDV----LFE-KLELVNGVLYTGG 128 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~-~l~~~dGlilpGG 128 (263)
+...+.+.+++.|..++......+.+. +.. .-.++||||+.+.
T Consensus 18 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 18 VGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445577788889988776544333321 111 1246899999864
No 300
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=42.55 E-value=41 Score=30.68 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=32.0
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
||+.+||+. |.+-.....+++++...+ .-++|+..|+.=|..
T Consensus 4 ~Il~sGG~a--pG~Na~i~~~v~~a~~~g-----~~v~g~~~G~~GL~~ 45 (282)
T PF00365_consen 4 AILTSGGDA--PGMNAAIRGVVRYAIRRG-----WEVYGIRNGFEGLLN 45 (282)
T ss_dssp EEEEESS----TTHHHHHHHHHHHHHHTT-----SEEEEETTHHHHHHH
T ss_pred EEEecCCCc--hhhhHHHHHHHHHHHhcC-----CEEEEEEccCcccee
Confidence 677788876 666666678888888877 889999999977665
No 301
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=42.48 E-value=1.9e+02 Score=25.71 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=36.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhc-----ccCCEEEECCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-----ELVNGVLYTGG 128 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l-----~~~dGlilpGG 128 (263)
.+|||+....+. ...+-+...+.+.+++.|..+.++..+.+.+.- +.+ .++||+|+.+-
T Consensus 2 ~~IGvivp~~~n--------pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISN--------PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTS--------HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCC--------cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecc
Confidence 468888755421 112335556777888899988877655443321 222 36899999954
No 302
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=42.33 E-value=55 Score=26.21 Aligned_cols=76 Identities=20% Similarity=0.141 Sum_probs=41.3
Q ss_pred HHHHHHHcCCeEEEEe-cCCChhhHHH----hcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 90 YVKFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~-~~~~~~~l~~----~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
+.+++++.|+++.... ...+.+.+.+ .+++.|-||.+||-...+. +...+.++.+.+ .++-|.-.=
T Consensus 22 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~--D~t~~a~~~~~~-------~~l~~~~~~ 92 (144)
T PF00994_consen 22 LAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPD--DVTPEALAEAGG-------RELPGFEEL 92 (144)
T ss_dssp HHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTT--CHHHHHHHHHSS-------EE-HHHHHH
T ss_pred HHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccC--CcccHHHHHhcC-------cccccChHH
Confidence 4468899998776432 2234454543 3456899999999774332 122234444322 445444444
Q ss_pred hHHHHHHHcC
Q 024713 165 FELLTMIISK 174 (263)
Q Consensus 165 ~QlL~~~~GG 174 (263)
++.+....|.
T Consensus 93 ~~~~~~~pg~ 102 (144)
T PF00994_consen 93 FRGVSMRPGK 102 (144)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHhhc
Confidence 4455554443
No 303
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=41.95 E-value=1.4e+02 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHhc-ccCCEEEECCC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVL----FEKL-ELVNGVLYTGG 128 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~l-~~~dGlilpGG 128 (263)
.-+.....+.+++.|..++......+.+.. +... ..+||||+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 15 SELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 334456677888899888776543333221 1111 35899999875
No 304
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=41.42 E-value=1.6e+02 Score=26.05 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCC-CChhhH
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWA-KDGLYY 136 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~-~~~~~~ 136 (263)
..+|+||+++..+....+...+....+| ..+.+.|++. ..+..+... .+. +.+.+|.||+.|-.. +.+
T Consensus 144 ~~~~~V~~l~ghge~~~~~~~~~~~~~~--~~l~~~L~~~-y~V~~~~l~--~~~---IP~~~d~Lvi~~P~~~ls~--- 212 (271)
T PF09822_consen 144 DEKPKVYFLTGHGERGGGSMPNSQSTSY--SSLKSLLEKN-YDVEELNLA--NEE---IPDDADVLVIAGPKTDLSE--- 212 (271)
T ss_pred ccCceEEEEccccccccccccccCcchH--HHHHHHHHhc-CceeecCCc--ccc---cCCCCCEEEEECCCCCCCH---
Confidence 3589999998665430001111122222 3466788888 888877654 222 236799999988755 322
Q ss_pred HHHHHHHHHHHHhC
Q 024713 137 AIVEKVFKKILEKN 150 (263)
Q Consensus 137 ~~~~~li~~a~~~~ 150 (263)
.....++..+.++
T Consensus 213 -~e~~~l~~yl~~G 225 (271)
T PF09822_consen 213 -EELYALDQYLMNG 225 (271)
T ss_pred -HHHHHHHHHHHcC
Confidence 2234555555544
No 305
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=41.39 E-value=1.4e+02 Score=30.60 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~ 106 (263)
.||+|||.....+...+ ..+-.-++....+.++++|+.+..++.
T Consensus 32 ~kP~IgI~ns~~e~~pc----h~hl~~la~~vk~gi~~aGG~p~ef~t 75 (615)
T PRK12448 32 GKPIIAVVNSFTQFVPG----HVHLKDLGQLVAREIEAAGGVAKEFNT 75 (615)
T ss_pred CCCEEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCeeeEecc
Confidence 59999999876553322 122233455566788999998877643
No 306
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=41.34 E-value=1.4e+02 Score=27.79 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=38.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHH----h-cccCCEEEECCCCCCCh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFE----K-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~----~-l~~~dGlilpGG~~~~~ 133 (263)
.++|++--.....|+ ...-....+..++++.|+.++.... ..+.+.+.+ . .+.+|-||.+||-...+
T Consensus 157 ~~aIltvsde~~~G~-----i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 157 SAAVLVLSDSIAAGT-----KEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred EEEEEEECCcCCCCc-----EEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 677876443322222 2222233355689999998875543 234444433 2 24589999999977533
No 307
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=41.29 E-value=1.5e+02 Score=26.29 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=30.0
Q ss_pred HHHHHHHHcCC--eE-EEEecCCChhhHHHhcccCCEEEEC
Q 024713 89 SYVKFVESAGA--RV-IPLIYNEPEDVLFEKLELVNGVLYT 126 (263)
Q Consensus 89 s~v~~le~~G~--~~-v~i~~~~~~~~l~~~l~~~dGlilp 126 (263)
...+++++.|. ++ +.+...++.+.+..+++.+|.|++.
T Consensus 107 ~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiM 147 (228)
T PRK08091 107 LTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEE
Confidence 46788999998 66 4566667888888889999999884
No 308
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=41.22 E-value=85 Score=34.73 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=54.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--ChhhHHHhc----c---cCCEEEE-C--
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKL----E---LVNGVLY-T-- 126 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l----~---~~dGlil-p-- 126 (263)
.+|+|||+....... ..+..++. .+++.||+.|..|+++.... ....+.+.+ . .+|+||- +
T Consensus 238 ~~p~Vgil~~r~~~~------~~~~~~~d-alI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~gF 310 (1216)
T TIGR02025 238 KAPRVGLLLLRKHLL------TGNQAHYD-NLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTGF 310 (1216)
T ss_pred CCCEEEEEEchhhhh------cCCcHHHH-HHHHHHHHCCCcEEEEEecCccccHHHHHHHHhcccCCCCccEEEECCch
Confidence 589999998665422 12344554 58899999999998875432 111122111 1 4788883 3
Q ss_pred ---CCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe-ccchhHHHHHHH
Q 024713 127 ---GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA-HCLGFELLTMII 172 (263)
Q Consensus 127 ---GG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG-IClG~QlL~~~~ 172 (263)
||++-.. .....++++ +.| +|++- +-+.+|-+..-.
T Consensus 311 ~l~ggpa~~~--~~~a~~~L~---~ln-----VPvl~~~~l~~qt~~~W~ 350 (1216)
T TIGR02025 311 SLVGGPAGSD--AAAAVEILK---GLD-----VPYIVAIPLLFQTIESWT 350 (1216)
T ss_pred hccCCCcccc--chhhHHHHH---HCC-----CCEEEEEecCCCCHHHHH
Confidence 2332110 111123333 567 99985 556677776643
No 309
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.91 E-value=1.1e+02 Score=27.85 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=26.8
Q ss_pred cCCEEEEC-CCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 119 LVNGVLYT-GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 119 ~~dGlilp-GG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
.+|.||+. |||+...-|.-.-+.+.+.+.+.. +||+- -.||+
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~-----~Pvis-aIGHe 117 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASP-----IPVIS-AIGHE 117 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCC-----CCEEE-ecCCC
Confidence 47888775 555544433333457888888888 99884 44554
No 310
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=40.75 E-value=1.7e+02 Score=25.78 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCeE-EEEecCCChhhHHHhcccCCEEEECC
Q 024713 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
...+++++.|.++ +.+...++.+.+..+++.+|.|++..
T Consensus 101 ~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMt 140 (223)
T PRK08745 101 RTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMS 140 (223)
T ss_pred HHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEE
Confidence 4678899999887 45666678888888899999999843
No 311
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.54 E-value=1.2e+02 Score=26.31 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=57.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--hhhHHHhcccCCEEEECCCCCCChhh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dGlilpGG~~~~~~~ 135 (263)
...|+|.|+..... .. +....+.+.+.|.+++.+.++.+ .+.+..+.++++.+++--|--.++.-
T Consensus 2 ~~~~vv~Vir~~~~-----------~~--a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~ 68 (201)
T PRK06015 2 KLQPVIPVLLIDDV-----------EH--AVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQ 68 (201)
T ss_pred CCCCEEEEEEcCCH-----------HH--HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHH
Confidence 35688888775421 11 23477899999999998888754 23334433445665554444333332
Q ss_pred HHH--------------HHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 136 YAI--------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 136 ~~~--------------~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
.+. ..++++++.+.+ +|.+==|.=.--+..
T Consensus 69 a~~ai~aGA~FivSP~~~~~vi~~a~~~~-----i~~iPG~~TptEi~~ 112 (201)
T PRK06015 69 FEDAAKAGSRFIVSPGTTQELLAAANDSD-----VPLLPGAATPSEVMA 112 (201)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHHHH
Confidence 221 258999999988 998844444443333
No 312
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=40.44 E-value=81 Score=29.91 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=25.4
Q ss_pred cCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHH
Q 024713 119 LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (263)
Q Consensus 119 ~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL 168 (263)
.+|-|+|-||-.. .+++.+.+ ..+ +|||||-.|--+-
T Consensus 100 gVdlIvfaGGDGT-------arDVa~av-~~~-----vPvLGipaGvk~~ 136 (355)
T COG3199 100 GVDLIVFAGGDGT-------ARDVAEAV-GAD-----VPVLGIPAGVKNY 136 (355)
T ss_pred CceEEEEeCCCcc-------HHHHHhhc-cCC-----CceEeecccccee
Confidence 4889999998552 33455444 445 9999999886443
No 313
>PRK06851 hypothetical protein; Provisional
Probab=40.32 E-value=85 Score=29.93 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
.+.++-|.+.|+. +.+.+...+.+.+.+.|..+..+....++ +.+|||++|+
T Consensus 29 ~~~~~il~G~pGt----------GKStl~~~i~~~~~~~g~~Ve~~~~~~d~-------~slDgviip~ 80 (367)
T PRK06851 29 ANRIFILKGGPGT----------GKSTLMKKIGEEFLEKGYDVEFLHCSSDN-------DSLDGVIIPE 80 (367)
T ss_pred cceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEEEcCCCC-------CceeeEEecC
Confidence 4456777777764 35666667888888889888887765543 3679999987
No 314
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=40.27 E-value=98 Score=28.03 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=45.3
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH--HHHHHHHHHhCCCCCcceE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV--EKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~--~~li~~a~~~~d~g~~~PI 158 (263)
.++.+|..-+..+|+++|.. .+.+|.+-++-||.+.++..-.+ .+.+.. -.| +|+
T Consensus 48 HHr~~il~Lv~~al~ea~v~----------------~~diD~icyTKGPGmgaPL~~vaivaRtlsl--lw~-----kPl 104 (336)
T KOG2708|consen 48 HHRAWILGLVKQALEEAGVT----------------SDDIDCICYTKGPGMGAPLSVVAIVARTLSL--LWN-----KPL 104 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCC----------------hhhCCEEEEcCCCCCCCchhhHHHHHHHHHH--HhC-----CCc
Confidence 46677776666788887742 23479999999998654432211 122222 257 999
Q ss_pred Eec--cchhHHHHHHH
Q 024713 159 YAH--CLGFELLTMII 172 (263)
Q Consensus 159 LGI--ClG~QlL~~~~ 172 (263)
.|+ |.|+-.|....
T Consensus 105 v~VNHCigHIEMGR~i 120 (336)
T KOG2708|consen 105 VGVNHCIGHIEMGREI 120 (336)
T ss_pred ccchhhhhhhhhccee
Confidence 998 99998887654
No 315
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.02 E-value=1.1e+02 Score=26.09 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG 128 (263)
+.....+.+++.|..++......+.+.. +.. -.++||||+.+-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 17 VSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4456778888999988776554433321 111 225899999874
No 316
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=40.00 E-value=2.7e+02 Score=24.77 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCC---------ChhhHHHhc-----ccCCEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNE---------PEDVLFEKL-----ELVNGV 123 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~---------~~~~l~~~l-----~~~dGl 123 (263)
.-..|+|+|.. ...+.....+++++.|.+++-+. ... +++.+.+.+ ..+|+|
T Consensus 119 g~~RIalvTPY-------------~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 119 GVRRISLLTPY-------------TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred CCCEEEEECCC-------------cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 34578888743 34556677889999998887652 111 233333222 257899
Q ss_pred EECCCCC
Q 024713 124 LYTGGWA 130 (263)
Q Consensus 124 ilpGG~~ 130 (263)
++++...
T Consensus 186 fisCTnL 192 (239)
T TIGR02990 186 FLSCTAL 192 (239)
T ss_pred EEeCCCc
Confidence 9987754
No 317
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=39.93 E-value=2.5e+02 Score=24.24 Aligned_cols=43 Identities=12% Similarity=-0.039 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCeEEEEecCC--Chh----hHHHhc-ccCCEEEECCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNE--PED----VLFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~--~~~----~l~~~l-~~~dGlilpGG 128 (263)
+.....+.+++.|..++....+. +.+ .++..+ .++||||+.+.
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 17 VNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44566778889999888765432 111 222222 36999999864
No 318
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=39.78 E-value=2.7e+02 Score=24.73 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=35.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
...||++..... + ....-+...+.+.+++.|..+.+...+.+.+. +... -.++||||+.+.
T Consensus 60 ~~~Igvi~~~~~-------~-~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLE-------N-YSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCC-------C-ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 468999874321 1 12233445677788889998877665433321 1211 236899998764
No 319
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=39.40 E-value=1.2e+02 Score=29.41 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHcCCeEEEEe-cCCChhhH----HHhcccCCEEEECCCCC
Q 024713 92 KFVESAGARVIPLI-YNEPEDVL----FEKLELVNGVLYTGGWA 130 (263)
Q Consensus 92 ~~le~~G~~~v~i~-~~~~~~~l----~~~l~~~dGlilpGG~~ 130 (263)
+++++.|+.+.... ...+.+.+ ...++.+|-||++||-.
T Consensus 27 ~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 27 DFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred HHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 57999999876443 23334433 33456789999999965
No 320
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=38.71 E-value=1.5e+02 Score=23.46 Aligned_cols=78 Identities=9% Similarity=-0.055 Sum_probs=38.5
Q ss_pred CchhhhHHHHHHHHHHcCCeEE-EEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVI-PLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v-~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
++...++..+.+.++..|..+. +.... +.+.....+.++|.|+|...---...+......+++.... ++..+=++
T Consensus 12 GnTe~iA~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avf 87 (140)
T TIGR01754 12 GNTEEVAFMIQDYLQKDGHEVDILHRIG-TLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIF 87 (140)
T ss_pred ChHHHHHHHHHHHHhhCCeeEEeccccc-ccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEE
Confidence 3467788878888888887765 22221 1111111245678887755311011111223345554422 33345567
Q ss_pred ecc
Q 024713 160 AHC 162 (263)
Q Consensus 160 GIC 162 (263)
|.|
T Consensus 88 gtg 90 (140)
T TIGR01754 88 GTG 90 (140)
T ss_pred EcC
Confidence 765
No 321
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=38.40 E-value=13 Score=30.93 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCEEEECCCCCCC--hhhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 120 VNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 120 ~dGlilpGG~~~~--~~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
+|-|+|.||-+.. +.-.+..++++++... +.+.|||.
T Consensus 81 ~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-------~~iiGiCF 119 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTPEDVNELIKKISP-------KKIIGICF 119 (147)
T ss_dssp EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-------EEEEEEEE
T ss_pred CCEEEEEcccccCCCCCCHHHHHHHHHHhCc-------CCEEEEeh
Confidence 7999999998741 2222345577777643 44999994
No 322
>PRK00549 competence damage-inducible protein A; Provisional
Probab=38.03 E-value=1.2e+02 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=26.3
Q ss_pred HHHHHHcCCeEEEEe-cCCChhhHH----HhcccCCEEEECCCCC
Q 024713 91 VKFVESAGARVIPLI-YNEPEDVLF----EKLELVNGVLYTGGWA 130 (263)
Q Consensus 91 v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~~dGlilpGG~~ 130 (263)
.+.+++.|+.+..+. ...+.+.+. ...+.+|-||++||-.
T Consensus 26 ~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 26 SEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred HHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 357999999776443 233444443 3345789999999965
No 323
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=37.87 E-value=2.3e+02 Score=24.37 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEe-cCCChhh----HHHh-cccCCEEEECCC
Q 024713 85 YIAASYVKFVESAGARVIPLI-YNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~-~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
.+.....+.+++.|..+.+.. ...+.+. +... -.++||+|+.+.
T Consensus 15 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 15 IAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344556678888998887753 2222221 1221 136899999864
No 324
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=37.80 E-value=52 Score=30.40 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=31.4
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
||+.+||+. |.+-.....+++++.+.+ .-|+|+..|++=|.
T Consensus 3 aIltsGG~a--pG~Na~i~~vv~~a~~~g-----~~v~G~~~G~~GL~ 43 (301)
T TIGR02482 3 GILTSGGDA--PGMNAAIRAVVRTAIYHG-----FEVYGIRRGYKGLI 43 (301)
T ss_pred EEEccCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecCHHHhc
Confidence 577777776 666555667888887776 78999999998664
No 325
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=37.73 E-value=2.1e+02 Score=24.30 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHH--hCCCCCcceEEe
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILE--KNDAGDHFPLYA 160 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~--~~d~g~~~PILG 160 (263)
..-|++-++.-|++.|..|.+.+...-.+ + .++.+|.||+--. -....+-.....++++-.+ .+ +|.--
T Consensus 14 T~kIA~~iA~~L~e~g~qvdi~dl~~~~~-~--~l~~ydavVIgAs-I~~~h~~~~~~~Fv~k~~e~L~~-----kP~A~ 84 (175)
T COG4635 14 TRKIAEYIASHLRESGIQVDIQDLHAVEE-P--ALEDYDAVVIGAS-IRYGHFHEAVQSFVKKHAEALST-----KPSAF 84 (175)
T ss_pred HHHHHHHHHHHhhhcCCeeeeeehhhhhc-c--ChhhCceEEEecc-hhhhhhHHHHHHHHHHHHHHHhc-----CCceE
Confidence 45566656678999999998876654222 1 3678999997422 1112222223344444322 34 88888
Q ss_pred ccchh
Q 024713 161 HCLGF 165 (263)
Q Consensus 161 IClG~ 165 (263)
+|.+.
T Consensus 85 f~vnl 89 (175)
T COG4635 85 FSVNL 89 (175)
T ss_pred EEeeh
Confidence 88765
No 326
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=37.48 E-value=1.2e+02 Score=33.90 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=28.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~ 106 (263)
.+|+|||+.....-. ....++. .+++.||+.|..|+++..
T Consensus 315 ~~p~Vgil~yrs~~~-------~~~~~id-alI~~LE~~G~~vipvf~ 354 (1353)
T PLN03241 315 DAPRVAILLYRKHVI-------TKQPYLA-DLVRQMEESGVLPVPIFI 354 (1353)
T ss_pred CCCEEEEEecchhhh-------cCChHHH-HHHHHHHHCCCeEEEEEe
Confidence 489999998664321 1234554 588999999999988754
No 327
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=37.42 E-value=1.7e+02 Score=27.73 Aligned_cols=80 Identities=5% Similarity=0.017 Sum_probs=45.3
Q ss_pred CchhhhHHHHHHHHH--HcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcce
Q 024713 81 TNASYIAASYVKFVE--SAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 81 ~~~s~i~~s~v~~le--~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
++..-++..+.+.++ ..|+++.+..... +.+++...+..+|+|+|- .|.....+......+++.....+-+|...=
T Consensus 259 GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~G-spT~~~~~~~~~~~~l~~l~~~~~~~K~~a 337 (394)
T PRK11921 259 NSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVG-SSTINRGILSSTAAILEEIKGLGFKNKKAA 337 (394)
T ss_pred hHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEE-CCCcCccccHHHHHHHHHhhccCcCCCEEE
Confidence 346677887888887 6788887776643 345544445579999874 222111111223455555444444554445
Q ss_pred EEec
Q 024713 158 LYAH 161 (263)
Q Consensus 158 ILGI 161 (263)
++|.
T Consensus 338 ~FGs 341 (394)
T PRK11921 338 AFGS 341 (394)
T ss_pred EEec
Confidence 5664
No 328
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=37.28 E-value=3e+02 Score=24.52 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=34.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--hhhH-HHh-cccCCEEEECCCCC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVL-FEK-LELVNGVLYTGGWA 130 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--~~~l-~~~-l~~~dGlilpGG~~ 130 (263)
.++|..+|..+. +..... .+...+.+++.|..+.+...+.. .+.+ ... -+.+|.||.-||-.
T Consensus 3 ~~~ii~Np~sg~------~~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 3 EAPAILNPTAGK------SNDNKP-LREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred eEEEEECCCccc------hhhHHH-HHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCC
Confidence 567777775321 111222 33467788899988766554332 1111 111 13478899888854
No 329
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.14 E-value=1.4e+02 Score=27.07 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEec-CCChhhH----HHhcccCCEEEECCCCC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIY-NEPEDVL----FEKLELVNGVLYTGGWA 130 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l----~~~l~~~dGlilpGG~~ 130 (263)
.+.+|++ +.|.+.|..+.-+.+ -.+.+.+ ....+++|-||++||-.
T Consensus 21 tNa~~la----~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLA----DELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHH----HHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 5677776 479999987765443 2334433 34456799999999965
No 330
>PRK03673 hypothetical protein; Provisional
Probab=36.58 E-value=1.5e+02 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=30.1
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHHH----hcccCCEEEECCCCC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLI-YNEPEDVLFE----KLELVNGVLYTGGWA 130 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~~----~l~~~dGlilpGG~~ 130 (263)
.+..|++ +.+++.|+.+.... ...+.+.+.+ .++.+|-||++||-.
T Consensus 21 tN~~~la----~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 21 TNAAWLA----DFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred hHHHHHH----HHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3445554 47999999875443 3344555543 345689999999965
No 331
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=36.36 E-value=2.4e+02 Score=27.32 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhcc--cCCEEE----------
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLE--LVNGVL---------- 124 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~--~~dGli---------- 124 (263)
..||.|||++-=-+ ..++. ...+.||+.|.++.+++-+-. -...+++++ .+|||+
T Consensus 183 ~~kp~I~iTmfGvT-----------Tp~V~-~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~~G~~~~VlDlTttEl~d~ 250 (403)
T PF06792_consen 183 EDKPLIGITMFGVT-----------TPCVD-AIRERLEEEGYEVLVFHATGTGGRAMERLIREGQFDGVLDLTTTELADE 250 (403)
T ss_pred CCCcEEEEECCCCc-----------HHHHH-HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHcCCcEEEEECcHHHHHHH
Confidence 78999999984322 34554 367899999999999886532 122222222 366665
Q ss_pred ECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc
Q 024713 125 YTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 125 lpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
+-||-.. ...+=++.+.+++ +|-...|=++-+++ ||..
T Consensus 251 l~GGv~s------agp~Rl~AA~~~G-----IP~Vvs~GalDmVn--Fg~~ 288 (403)
T PF06792_consen 251 LFGGVLS------AGPDRLEAAARAG-----IPQVVSPGALDMVN--FGPP 288 (403)
T ss_pred HhCCCCC------CCchHHHHHHHcC-----CCEEEecCccceec--cCCc
Confidence 1222110 0124566777888 99999988877776 5554
No 332
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=35.26 E-value=2.1e+02 Score=28.91 Aligned_cols=68 Identities=13% Similarity=0.319 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
+|+++++-+.|.+|.+|.+-.+...- .. ... ..|.....+.++.+.+.. ..+.+=++|.|+|=-+
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-r~------------~~l-dDYv~~i~~Ald~V~~~t-G~~~vnl~GyC~GGtl 301 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-RE------------WGL-STYVDALKEAVDAVRAIT-GSRDLNLLGACAGGLT 301 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-cC------------CCH-HHHHHHHHHHHHHHHHhc-CCCCeeEEEECcchHH
Confidence 68999999999999999875432210 00 011 233333335555554321 2233789999999988
Q ss_pred HHH
Q 024713 168 LTM 170 (263)
Q Consensus 168 L~~ 170 (263)
++.
T Consensus 302 ~a~ 304 (560)
T TIGR01839 302 CAA 304 (560)
T ss_pred HHH
Confidence 886
No 333
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.24 E-value=82 Score=24.49 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
++....+.+++.|.+++.+..+.+. .....+.+|.+++-|+.. .+.-|-..+.+++.+.+.+
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s~~d~--~s~~~~~ad~~~~~~~~~-~~~~yl~~e~I~~ia~~~g 74 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNSNPDT--VSTHVDMADEAYFEPPGP-SPESYLNIEAIIDIARKEG 74 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGGGT--TGHHHHHSSEEEEEESSS-GGGTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcceeccCchhc--ccccccccccceecCcch-hhhhhccHHHHhhHhhhhc
Confidence 4667889999999999988765432 222345678877766433 2333334566777776554
No 334
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=35.23 E-value=76 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=19.1
Q ss_pred CCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 120 VNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 120 ~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
+.||.|+||. . ......++++++.+.+
T Consensus 62 ~~gVt~SGGE-l---~~~~l~~ll~~lk~~G 88 (147)
T TIGR02826 62 ISCVLFLGGE-W---NREALLSLLKIFKEKG 88 (147)
T ss_pred CCEEEEechh-c---CHHHHHHHHHHHHHCC
Confidence 4799999997 3 2233557888877665
No 335
>PRK05568 flavodoxin; Provisional
Probab=35.20 E-value=1e+02 Score=24.23 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=31.4
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
.+...++..+.+.+++.|..+.++...... .. .+..+|+|+|--
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~--~~-~~~~~d~iilgs 56 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEAS--VD-DVKGADVVALGS 56 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCC--HH-HHHhCCEEEEEC
Confidence 457788888888889999988888765432 11 256789887743
No 336
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.98 E-value=1.9e+02 Score=21.61 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=31.5
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
-..|.+.....+.+++.|..+.+... +...+......+|-|+++.
T Consensus 10 ~sTS~~~~ki~~~~~~~~~~~~v~~~--~~~~~~~~~~~~Diil~~P 54 (96)
T cd05564 10 MSTSILVKKMKKAAEKRGIDAEIEAV--PESELEEYIDDADVVLLGP 54 (96)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEEe--cHHHHHHhcCCCCEEEECh
Confidence 34677888888899999987665544 3344555577899887763
No 337
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.52 E-value=3.1e+02 Score=24.75 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=33.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHh-----cccCCEEEECCCCC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEK-----LELVNGVLYTGGWA 130 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~-----l~~~dGlilpGG~~ 130 (263)
.+.|.-+|..+. ....-.....++.+++.|..+.++..+. ..+..+. .+.+|.||+.||-.
T Consensus 10 ~~~iI~NP~sG~-------g~~~~~~~~~~~~l~~~g~~~~~~~t~~-~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 10 KVTVLTNPLSGH-------GAAPHAAERAIARLHHRGVDVVEIVGTD-AHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred eEEEEECCCCCC-------CcHHHHHHHHHHHHHHcCCeEEEEEeCC-HHHHHHHHHHHHhcCCCEEEEECCch
Confidence 456666775431 1122233456778999998766544332 2222221 23578899888844
No 338
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=34.15 E-value=2.3e+02 Score=23.24 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=32.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH-HcCCeEEEEecCC--------------C--hhhHHHhcccCCEEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVE-SAGARVIPLIYNE--------------P--EDVLFEKLELVNGVL 124 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le-~~G~~~v~i~~~~--------------~--~~~l~~~l~~~dGli 124 (263)
+++|.+.++.+ ....-+.+.+.+.++ ..|.+++.+.... + .+.+.+.+..+|+||
T Consensus 2 Il~i~GS~r~~--------s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 2 VVGVSGSLTRP--------SRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 56777777532 234455666666664 4577776664321 0 123345567789988
Q ss_pred EC
Q 024713 125 YT 126 (263)
Q Consensus 125 lp 126 (263)
|.
T Consensus 74 i~ 75 (174)
T TIGR03566 74 VG 75 (174)
T ss_pred EE
Confidence 73
No 339
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=34.01 E-value=16 Score=23.60 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=10.5
Q ss_pred EEeccchhHHHHHHH
Q 024713 158 LYAHCLGFELLTMII 172 (263)
Q Consensus 158 ILGIClG~QlL~~~~ 172 (263)
.-|-|.|.|+|..+-
T Consensus 32 tagacfgaqimvaak 46 (48)
T PF09075_consen 32 TAGACFGAQIMVAAK 46 (48)
T ss_dssp S--TTTTTHHHHTTT
T ss_pred ccccccchhhhhhcc
Confidence 568899999997553
No 340
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.75 E-value=2.1e+02 Score=24.46 Aligned_cols=44 Identities=5% Similarity=-0.107 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHHHH-cCCeEEEEecCCChhhHHHhc-ccCCEEEECC
Q 024713 83 ASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKL-ELVNGVLYTG 127 (263)
Q Consensus 83 ~s~i~~s~v~~le~-~G~~~v~i~~~~~~~~l~~~l-~~~dGlilpG 127 (263)
...+.....+++++ .|..++....+ ..+.+..+. .++||+|+.+
T Consensus 13 ~~~~~~gi~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 13 GRGVLRGIARYAREHGPWSIYLEPRG-LQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeccc-chhhhhhccccccceEEEEC
Confidence 34455667788888 56665543322 122222221 2589999975
No 341
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.44 E-value=3.2e+02 Score=24.18 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=36.7
Q ss_pred hHHHHHHHHHH--cCCeEEEEecCCChh----hHHHh-cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 86 IAASYVKFVES--AGARVIPLIYNEPED----VLFEK-LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 86 i~~s~v~~le~--~G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
+...+.+.+++ .|..+...+...+.+ .++.. -.++||+|+.+.. +. .....++++.+.+ +||
T Consensus 17 ~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~---~~---~~~~~~~~~~~~g-----iPv 85 (303)
T cd01539 17 VRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD---PT---AAQTVINKAKQKN-----IPV 85 (303)
T ss_pred HHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc---hh---hHHHHHHHHHHCC-----CCE
Confidence 44556677777 677766665543332 22222 2369999996532 11 1234566666667 887
Q ss_pred Eec
Q 024713 159 YAH 161 (263)
Q Consensus 159 LGI 161 (263)
.-+
T Consensus 86 V~~ 88 (303)
T cd01539 86 IFF 88 (303)
T ss_pred EEe
Confidence 643
No 342
>PRK09739 hypothetical protein; Provisional
Probab=33.43 E-value=1.8e+02 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=26.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~ 105 (263)
+-++-|.++|..+ ....-+.+.+++.+++.|..+..+.
T Consensus 4 mkiliI~~sp~~~--------s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 4 MRIYLVWAHPRHD--------SLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred ceEEEEEcCCCCC--------CcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3467778888542 3356677778888998888777665
No 343
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.05 E-value=1.7e+02 Score=22.67 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=37.6
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHhc--ccCCEEEECCCCCCChhhHHHHHHHHHHHHHh
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~ 149 (263)
.+++..|.+++.+..+.+.+++.+.. .++|.|.+++-.. .+....+++++...+.
T Consensus 21 ~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~---~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 21 RALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG---GHMTLFPEVIELLREL 77 (122)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch---hhHHHHHHHHHHHHhc
Confidence 47899999999887776666654322 3589999987743 3444456777776655
No 344
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.34 E-value=1.2e+02 Score=23.59 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCeEEEEecCCCh-------hhHHHhcccCCEEEECCCCCCChhhHHH----------------HHHHHHH
Q 024713 89 SYVKFVESAGARVIPLIYNEPE-------DVLFEKLELVNGVLYTGGWAKDGLYYAI----------------VEKVFKK 145 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~-------~~l~~~l~~~dGlilpGG~~~~~~~~~~----------------~~~li~~ 145 (263)
...++|.+.|.++.++...... ..+.+.-..+|.+++.-.+...+...++ .+++.++
T Consensus 18 ~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~ 97 (116)
T PF13380_consen 18 RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEA 97 (116)
T ss_dssp HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHH
T ss_pred HHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHH
Confidence 3556777788888887654311 1111111345555554333211111111 2467777
Q ss_pred HHHhCCCCCcceEE-eccchhH
Q 024713 146 ILEKNDAGDHFPLY-AHCLGFE 166 (263)
Q Consensus 146 a~~~~d~g~~~PIL-GIClG~Q 166 (263)
+.+.+ +.++ .=|.|+.
T Consensus 98 a~~~g-----i~vigp~C~gv~ 114 (116)
T PF13380_consen 98 AREAG-----IRVIGPNCLGVV 114 (116)
T ss_dssp HHHTT------EEEESS-HHHH
T ss_pred HHHcC-----CEEEeCCcceEE
Confidence 77777 8888 5577764
No 345
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=32.12 E-value=2.2e+02 Score=22.12 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHHHHHHH-cCCeEEEEec--CCChhhHHHhcc--cCCEEEECCCC-CCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 89 SYVKFVES-AGARVIPLIY--NEPEDVLFEKLE--LVNGVLYTGGW-AKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 89 s~v~~le~-~G~~~v~i~~--~~~~~~l~~~l~--~~dGlilpGG~-~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.-.++|++ .|..+..+.. .....++.+.+. ++|.||.+..+ +..+. ......+-+.+++.+ +|++
T Consensus 35 gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~-~~dg~~iRr~a~~~~-----Ip~~ 105 (115)
T cd01422 35 TTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPH-EPDVKALLRLCDVYN-----IPLA 105 (115)
T ss_pred hHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcc-cccHHHHHHHHHHcC-----CCEE
Confidence 34567888 7887766643 222222333232 58999998764 32221 122346777888888 9986
No 346
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.01 E-value=2.6e+02 Score=24.24 Aligned_cols=44 Identities=5% Similarity=-0.387 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG 128 (263)
-+.....+.+++.|..+.......+.+.. ... -.++||||+.+.
T Consensus 16 ~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 16 QGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34556677788899888776544332222 221 235899999653
No 347
>PRK03670 competence damage-inducible protein A; Provisional
Probab=31.76 E-value=1.9e+02 Score=25.98 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=25.3
Q ss_pred HHHHHHcCCeEEEEec-CCChhhHHHh----cc-cCCEEEECCCCC
Q 024713 91 VKFVESAGARVIPLIY-NEPEDVLFEK----LE-LVNGVLYTGGWA 130 (263)
Q Consensus 91 v~~le~~G~~~v~i~~-~~~~~~l~~~----l~-~~dGlilpGG~~ 130 (263)
.+++++.|+.+..+.. ..+.+.+.+. ++ .+|-||++||-.
T Consensus 26 a~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 26 AQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred HHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 3579999998764432 3344444332 33 369999999965
No 348
>PRK07667 uridine kinase; Provisional
Probab=31.73 E-value=1.2e+02 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~ 107 (263)
.+.+|||.+.++. +.+.+++.+.+.+...|..+..+..+
T Consensus 16 ~~~iIgI~G~~gs----------GKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 16 NRFILGIDGLSRS----------GKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4579999998864 46788888888898888877777654
No 349
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=31.68 E-value=1.6e+02 Score=29.82 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~ 106 (263)
..||+|||.+...+...+ .....-+.....+.++++|+.++-.+.
T Consensus 40 ~~kP~IgI~~s~~d~~p~----h~hl~~l~~~vk~~i~~aGg~p~ef~t 84 (575)
T COG0129 40 FGKPIIGIANSYNDMVPG----HQHLKDLAQLVKEGIREAGGVPVEFGT 84 (575)
T ss_pred cCCCeEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCceeEeCC
Confidence 489999999877654321 122233444566788899977766543
No 350
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=31.21 E-value=1.9e+02 Score=24.57 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
-+...+.+++++.|..+.+...+.+.+. +.... .++||||+.+..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (269)
T cd06275 16 EVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSE 65 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3445667788889988877654433332 12222 368999998754
No 351
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=31.00 E-value=52 Score=29.57 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=24.1
Q ss_pred cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
++.+|.+|.-||-. .+ ....+.+...+ +|||||=.|.
T Consensus 23 ~~~~Dlvi~iGGDG---Tl----L~a~~~~~~~~-----~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDG---FM----LQTLHRYMNSG-----KPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCH---HH----HHHHHHhcCCC-----CeEEEEeCCC
Confidence 34579999999944 22 12333333345 9999999885
No 352
>PTZ00445 p36-lilke protein; Provisional
Probab=30.98 E-value=1.5e+02 Score=26.20 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChh---------hHHHHHHHHHHHHHhCCCCCcc
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL---------YYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~---------~~~~~~~li~~a~~~~d~g~~~ 156 (263)
.+..+++.|++.|.+++.+..+.+ + +. +-+||+.. +. .....+.+++++.+.+ +
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnT---l---I~-----~HsgG~~~-~~~~~~~~~~~~tpefk~~~~~l~~~~-----I 92 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLT---M---IT-----KHSGGYID-PDNDDIRVLTSVTPDFKILGKRLKNSN-----I 92 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhh---h---hh-----hhcccccC-CCcchhhhhccCCHHHHHHHHHHHHCC-----C
Confidence 456799999999999998865432 1 11 13677652 21 1223457888888888 9
Q ss_pred eEEeccchhHHH
Q 024713 157 PLYAHCLGFELL 168 (263)
Q Consensus 157 PILGIClG~QlL 168 (263)
||.=+=.-=|..
T Consensus 93 ~v~VVTfSd~~~ 104 (219)
T PTZ00445 93 KISVVTFSDKEL 104 (219)
T ss_pred eEEEEEccchhh
Confidence 988777666655
No 353
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=30.96 E-value=2e+02 Score=25.67 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=28.1
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC---------------ChhhHHHhcccCCEEEECCCCCC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE---------------PEDVLFEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~---------------~~~~l~~~l~~~dGlilpGG~~~ 131 (263)
.++..+..+.++.++ -+++++++..+. +...+.+.+.++|.+|+.||+-.
T Consensus 12 ~GDe~~l~~~l~~l~-~~~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~ 76 (298)
T TIGR03609 12 LGDEALLAALLRELP-PGVEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLL 76 (298)
T ss_pred cchHHHHHHHHHhcC-CCCeEEEecCChHHHHhhcCceEEccCCHHHHHHHHHHCCEEEECCcccc
Confidence 345566666555553 356666654321 11122334678899998888754
No 354
>PRK08005 epimerase; Validated
Probab=30.84 E-value=2e+02 Score=25.17 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCeE-EEEecCCChhhHHHhcccCCEEEECCC
Q 024713 89 SYVKFVESAGARV-IPLIYNEPEDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 89 s~v~~le~~G~~~-v~i~~~~~~~~l~~~l~~~dGlilpGG 128 (263)
...+.+++.|.++ +.+...++.+.+...+..+|.|++...
T Consensus 97 ~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV 137 (210)
T PRK08005 97 EILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTS 137 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEe
Confidence 4667899999887 456666778888888889999998543
No 355
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=30.80 E-value=2.3e+02 Score=25.16 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
...+||++....+ + ....-+.....+.+++.|..+.+.....+.+. +... -.++||+|+.+.
T Consensus 58 ~~~~Ig~i~~~~~-------~-~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 58 SDKVVAVIVSRLD-------S-PSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CCCEEEEEeCCcc-------c-ccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4468999873211 1 11223445667788889998877654333322 1111 125899999764
No 356
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=30.74 E-value=1.9e+02 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
...+.+++.+.|..+.+++.+. .+.+++-||+|.-...++. ..+.++...+++
T Consensus 28 ~~~~~~~l~~~gi~~d~v~~~~-------~l~~y~~vi~P~~~~~~~~----~~~~l~~~v~~G 80 (154)
T cd03143 28 ALALYRALRELGIPVDVVPPDA-------DLSGYKLVVLPDLYLLSDA----TAAALRAYVENG 80 (154)
T ss_pred HHHHHHHHHHCCCCEEEECCCC-------CcccCCEEEECchhcCCHH----HHHHHHHHHHCC
Confidence 4467889999999998886432 2568999999988765432 233444444544
No 357
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=30.04 E-value=82 Score=29.31 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=30.7
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
+|+.+||+. |.+-.....+++.+.+.+ .-|+|+-.|+.=|.
T Consensus 4 aIltsGG~a--pGmNa~i~~vv~~a~~~g-----~~v~G~~~G~~GL~ 44 (317)
T cd00763 4 GVLTSGGDA--PGMNAAIRGVVRSAIAEG-----LEVYGIRDGYAGLI 44 (317)
T ss_pred EEEccCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecCHHHhc
Confidence 466666665 666555668888888777 78999999997664
No 358
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=29.80 E-value=2.9e+02 Score=24.44 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
...+||++....+ + .....+...+.+.+++.|..+.+.....+.+. +.... .++||||+.+..
T Consensus 55 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 55 QTRTIGMLITAST-------N-PFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred CCCeEEEEeCCCC-------C-CcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3468999874321 1 22334555677888889988776554333221 22222 358999998754
No 359
>PRK09701 D-allose transporter subunit; Provisional
Probab=29.55 E-value=4.1e+02 Score=23.68 Aligned_cols=62 Identities=6% Similarity=-0.061 Sum_probs=35.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe--cCCChh----hHHHhc-ccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YNEPED----VLFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~--~~~~~~----~l~~~l-~~~dGlilpGG 128 (263)
+.-.||++..... ......+.....+.+++.|..+..+. ...+.+ .++..+ .++||||+.+.
T Consensus 23 ~~~~Igvi~~~~~--------~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 23 AAAEYAVVLKTLS--------NPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred cCCeEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3347888874321 12233445566778888898887653 222221 122222 35999999875
No 360
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=29.41 E-value=2.9e+02 Score=28.49 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEec-CCChhhHHH----h--cccCCEEEECCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIY-NEPEDVLFE----K--LELVNGVLYTGGW 129 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~-~~~~~~l~~----~--l~~~dGlilpGG~ 129 (263)
+.+|.++|++.-..-..+...+.. ...+..-+-...+.. |++++.+.. ..+.+.+.+ . .+.+|-||.+||-
T Consensus 456 ~~~~rvaIIt~sde~~~~~~~D~s-g~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGt 534 (659)
T PLN02699 456 NPEVKVAILTVSDTVSSGAGPDRS-GPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGT 534 (659)
T ss_pred cCCcEEEEEEECCcccCCCccccc-chHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 577899998744322111111110 011111111123334 887764432 334444433 2 2458999999997
Q ss_pred CC
Q 024713 130 AK 131 (263)
Q Consensus 130 ~~ 131 (263)
..
T Consensus 535 s~ 536 (659)
T PLN02699 535 GF 536 (659)
T ss_pred cC
Confidence 64
No 361
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=29.33 E-value=85 Score=29.41 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=30.5
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
||+.+||+. |.+-.....+++++.+.+ .-|+|+..|+.=|.
T Consensus 4 ~Il~sGG~a--pG~N~~i~~~v~~~~~~g-----~~v~G~~~G~~GL~ 44 (338)
T cd00363 4 GVLTSGGDA--PGMNAAIRGVVRSAIAEG-----LEVYGIYEGYAGLV 44 (338)
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEecChHHhC
Confidence 567777766 666555667888887766 78999999997554
No 362
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.97 E-value=4.2e+02 Score=23.59 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEEC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYT 126 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilp 126 (263)
+-...+.++|++.|.+++.+..+........ ..++|.|+..
T Consensus 23 ~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-~~~~D~v~~~ 63 (304)
T PRK01372 23 NSGAAVLAALREAGYDAHPIDPGEDIAAQLK-ELGFDRVFNA 63 (304)
T ss_pred HhHHHHHHHHHHCCCEEEEEecCcchHHHhc-cCCCCEEEEe
Confidence 3446788999999999998876543222111 2368988865
No 363
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=28.48 E-value=3.7e+02 Score=26.43 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=44.4
Q ss_pred chhhhHHHHHHHHHHc--CCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 82 NASYIAASYVKFVESA--GARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~--G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
+..-++..+.+.+++. |+.+.+..... +.+++...+..+|+|+| |.+.....+......+++...+.+-+|...=+
T Consensus 264 nTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-GspT~~~~~~p~~~~fl~~l~~~~l~gK~~~v 342 (479)
T PRK05452 264 NTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSSTMNNVMMPKIAGLLEEITGLRFRNKRASA 342 (479)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECCccCCcchHHHHHHHHHhhccCcCCCEEEE
Confidence 4567787788889876 55666666543 34444333446898876 33332222222344566665444445545556
Q ss_pred Eec
Q 024713 159 YAH 161 (263)
Q Consensus 159 LGI 161 (263)
+|-
T Consensus 343 FGS 345 (479)
T PRK05452 343 FGS 345 (479)
T ss_pred EEC
Confidence 664
No 364
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.46 E-value=3.9e+02 Score=23.45 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHcCCe-EEEE-ecCCChh----hHHHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 84 SYIAASYVKFVESAGAR-VIPL-IYNEPED----VLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~-~v~i-~~~~~~~----~l~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
..+...+.+.+++.|.. ++.. +.+.+.+ .++..+ +++||||+.+. + + ......++++.+++ +
T Consensus 14 ~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-~--~---~~~~~~l~~~~~~g-----i 82 (302)
T TIGR02637 14 EAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN-D--P---DALVPALKKAMKRG-----I 82 (302)
T ss_pred HHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-C--h---HHHHHHHHHHHHCC-----C
Confidence 34555677788888843 3332 2222221 222222 46999999764 2 1 11224556665666 7
Q ss_pred eEEe
Q 024713 157 PLYA 160 (263)
Q Consensus 157 PILG 160 (263)
|+.-
T Consensus 83 PvV~ 86 (302)
T TIGR02637 83 KVVT 86 (302)
T ss_pred EEEE
Confidence 7653
No 365
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=27.50 E-value=1.6e+02 Score=27.64 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=30.9
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE 108 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~ 108 (263)
.....++|||+..|+.+ ..+.| ..+.+.+.+.|-+|-++-.+.
T Consensus 47 ~tG~a~viGITG~PGaG---------KSTli-~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 47 RTGNAHVIGITGVPGAG---------KSTLI-EALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred cCCCCcEEEecCCCCCc---------hHHHH-HHHHHHHHHCCcEEEEEEECC
Confidence 33455799999999753 23445 458888899999888876653
No 366
>PRK09932 glycerate kinase II; Provisional
Probab=27.41 E-value=68 Score=30.79 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=30.9
Q ss_pred hHHHhcccCCEEEECCCCCCCh-hhHHH-HHHHHHHHHHhCCCCCcceEEecc
Q 024713 112 VLFEKLELVNGVLYTGGWAKDG-LYYAI-VEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 112 ~l~~~l~~~dGlilpGG~~~~~-~~~~~-~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+++.++.+| +||+|=+.++. ...+. .-.+.+.+.+.+ +|+..||
T Consensus 277 ~l~~~l~~AD-lVITGEG~~D~Qt~~GK~p~~Va~~A~~~~-----~Pvi~i~ 323 (381)
T PRK09932 277 NLEQAVQGAA-LVITGEGRIDSQTAGGKAPLGVASVAKQFN-----VPVIGIA 323 (381)
T ss_pred ChHHHhccCC-EEEECCCcccccccCCccHHHHHHHHHHcC-----CCEEEEe
Confidence 3456788889 67788765432 12222 237888888888 9999999
No 367
>PRK00170 azoreductase; Reviewed
Probab=27.39 E-value=2.9e+02 Score=22.93 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=26.5
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEec
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~--G~~~v~i~~ 106 (263)
-++.|.++|+.. +.....+++.+++.+++. |..+..+..
T Consensus 3 kil~i~gSpr~~-------~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 3 KVLVIKSSILGD-------YSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred eEEEEecCCCCC-------CcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 367888888642 133455677788888887 888777654
No 368
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=27.34 E-value=2.2e+02 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
..-+.....+.+++.|..+++.....+.+. +... -.++||||+.+..
T Consensus 14 ~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (260)
T cd06286 14 FSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSRE 65 (260)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 344556677888889998887765544321 2222 2358999997653
No 369
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.33 E-value=62 Score=29.28 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=23.2
Q ss_pred ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+.+|.++.-||-. .+. ...+.+...+ +||+||-.|.
T Consensus 32 ~~~D~vi~iGGDG---T~L----~a~~~~~~~~-----iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG---FFV----STAANYNCAG-----CKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH---HHH----HHHHHhcCCC-----CcEEEEecCC
Confidence 3589999999944 222 2233333345 9999999874
No 370
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=26.90 E-value=97 Score=28.92 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHh-CCCCCcceEEeccchhHHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEK-NDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~-~d~g~~~PILGIClG~QlL~~ 170 (263)
||+.+||+. |.+-.....+++++++. + .-++|+-.|++=|..
T Consensus 3 gIltsGG~a--pGmN~~i~~~v~~a~~~~g-----~~v~g~~~G~~GL~~ 45 (324)
T TIGR02483 3 GVLTGGGDC--PGLNAVIRGVVRRAIAEYG-----WEVIGIRDGWRGLLE 45 (324)
T ss_pred EEECCCCCc--HHHHHHHHHHHHHHHHcCC-----ceEEEEccCHHHhCC
Confidence 677788876 66655566788888744 5 679999999986653
No 371
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.68 E-value=4.6e+02 Score=24.09 Aligned_cols=81 Identities=6% Similarity=-0.055 Sum_probs=44.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-ecCCChh----hHHHhc-ccCCEEEECCCCCCChhh
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i-~~~~~~~----~l~~~l-~~~dGlilpGG~~~~~~~ 135 (263)
.|+++...... ....-+.....++.++.|..+... +.+.+.+ .++..+ +++|||++.+.. +
T Consensus 25 ~i~~v~k~~~~--------pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d---~-- 91 (336)
T PRK15408 25 RIAFIPKLVGV--------GFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVS---P-- 91 (336)
T ss_pred EEEEEECCCCC--------HHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCC---H--
Confidence 58877744321 122334456778888999888652 2222221 122222 469999997432 1
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 136 YAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 136 ~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
......++++.+++ +||.-+
T Consensus 92 -~al~~~l~~a~~~g-----IpVV~~ 111 (336)
T PRK15408 92 -DGLCPALKRAMQRG-----VKVLTW 111 (336)
T ss_pred -HHHHHHHHHHHHCC-----CeEEEe
Confidence 11235666676666 666543
No 372
>PRK09492 treR trehalose repressor; Provisional
Probab=26.56 E-value=3.2e+02 Score=24.06 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=35.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
..+||++....+ + .....+.....+.+++.|..+.+.....+.+. +... -.++||+|+.+.
T Consensus 62 ~~~Ig~i~~~~~-------~-~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 62 DKVVGIIVSRLD-------S-LSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred CCeEEEEecCCc-------C-cccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 358999874321 1 11233455677888999988876654333221 1111 135899999764
No 373
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.52 E-value=2.5e+02 Score=21.47 Aligned_cols=66 Identities=14% Similarity=0.012 Sum_probs=35.9
Q ss_pred HHHHHHHcCCeEEEEecC-C--ChhhHHHhcc--cCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 90 YVKFVESAGARVIPLIYN-E--PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~-~--~~~~l~~~l~--~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
-.++|++.|..+..+..- . .++..+.+.+ ++|.||...-+............+.+.|.+.+ +|++=
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~-----Ip~~T 104 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYK-----IPVTT 104 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcC-----CCEEE
Confidence 346788888877665321 1 2233333333 58888886433211111111236777888888 99863
No 374
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.48 E-value=5e+02 Score=24.42 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCC---ChhhHHHhcccC--CEEEECCCCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNE---PEDVLFEKLELV--NGVLYTGGWAK 131 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~---~~~~l~~~l~~~--dGlilpGG~~~ 131 (263)
+.|-.|..+.-|.... -+++.|+-.=.++|++. |..+ ....+. +.+++..+.... |-|+++||+..
T Consensus 27 ~~k~kiil~~yP~y~N-------iGD~aI~~ae~~fl~~~~~~~v-~~~~~~~dfs~se~~~~~s~~~e~~i~~~GGGNl 98 (339)
T COG5039 27 FAKKKIILLDYPSYPN-------IGDHAIAYAEKAFLKQHYGDKV-YYEASVKDFSASELIEIKSDIPEDIIFFTGGGNL 98 (339)
T ss_pred cccceEEEecCCCCCC-------chhHHHHHHHHHHHHhhcCceE-EEEecccccchhhhhhhhcCCccceEEEeCCCch
Confidence 3345566666675432 45788886667888887 5433 333221 223333334445 79999999975
Q ss_pred C
Q 024713 132 D 132 (263)
Q Consensus 132 ~ 132 (263)
.
T Consensus 99 G 99 (339)
T COG5039 99 G 99 (339)
T ss_pred h
Confidence 3
No 375
>PRK06703 flavodoxin; Provisional
Probab=26.47 E-value=3.3e+02 Score=21.62 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=29.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLY 125 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlil 125 (263)
.+...++..+.+.++..|..+.+....... . ..+..+|.|+|
T Consensus 13 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~-~~l~~~d~vii 54 (151)
T PRK06703 13 GNTEDIADLIKVSLDAFDHEVVLQEMDGMD--A-EELLAYDGIIL 54 (151)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEehhhCC--H-HHHhcCCcEEE
Confidence 457788888888999999888776654321 1 12567899888
No 376
>PRK14057 epimerase; Provisional
Probab=26.32 E-value=3.4e+02 Score=24.51 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCe---------E-EEEecCCChhhHHHhcccCCEEEECC
Q 024713 89 SYVKFVESAGAR---------V-IPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 89 s~v~~le~~G~~---------~-v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
...+++++.|++ + +.+...++.+.+..+++.+|.|++..
T Consensus 114 ~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMt 162 (254)
T PRK14057 114 HTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLA 162 (254)
T ss_pred HHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEE
Confidence 466788888863 3 45666677888888899999998843
No 377
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=26.24 E-value=4.2e+02 Score=22.69 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECC
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
..+.....+++++.|..+.+...+... .....++||+|+.+
T Consensus 20 ~~~~~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~vdgii~~~ 60 (270)
T cd01544 20 LSIRLGIEKRAQELGIELTKFFRDDDL---LEILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccchh---HHhccCcCEEEEec
Confidence 344456778888899988776543221 22356899999875
No 378
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.78 E-value=3e+02 Score=20.88 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHhcc--cCCEEEECCCCCCChhhHHHHHHHHHHHHHh
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEK 149 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l~--~~dGlilpGG~~~~~~~~~~~~~li~~a~~~ 149 (263)
.++++.|.+++.+..+.+.+++.+.+. ++|.|.++.-.. .......++++.+.+.
T Consensus 21 ~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~---~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 21 RALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLT---THMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHHc
Confidence 588999999987766666665543332 579999987633 2334455677766554
No 379
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=25.67 E-value=3.4e+02 Score=30.32 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=54.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-----hhhHHHhc-c--cCCEEEECCCCCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----EDVLFEKL-E--LVNGVLYTGGWAKD 132 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-----~~~l~~~l-~--~~dGlilpGG~~~~ 132 (263)
|+|||+-...... ..+..++. .+++.||+.|..|+++..... .+.+...+ . .+|.||-+.+....
T Consensus 202 p~vgilfyr~~~~------~~~~~~id-ali~~Le~~G~nvipvf~~~~k~~~~~~~~~~~~~~~~~vd~ii~~~~f~l~ 274 (1244)
T PRK05989 202 PTVAILFYRAHLQ------AGNTAPID-ALIAALEARGLNPLPVFVSSLKDAESPEVLEDLFNADALVDAVLNATGFALA 274 (1244)
T ss_pred CeEEEEEecchhc------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccccchHHHHHHHhcCCCCccEEEEcCCcccc
Confidence 9999997654322 13445554 588999999999988755422 23334333 2 37888855554421
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEE-eccchhHHHHHH
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMI 171 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PIL-GIClG~QlL~~~ 171 (263)
.. .. -++...+.| +||| +|+.+ |-...-
T Consensus 275 ~~--~~---~~~~l~~ln-----vPVlq~i~~~-~~~~~W 303 (1244)
T PRK05989 275 AA--AW---DVEVLAALD-----VPVLQVICSG-GNREAW 303 (1244)
T ss_pred Cc--ch---hhHHHHHCC-----CCEEEEeeCC-CCHHHH
Confidence 10 00 123333567 9998 66666 555443
No 380
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=25.15 E-value=2.8e+02 Score=26.86 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHcCCeEEEEecCC---ChhhHHHhccc--CCEEEECCCCCC--ChhhHH-HHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYNE---PEDVLFEKLEL--VNGVLYTGGWAK--DGLYYA-IVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~---~~~~l~~~l~~--~dGlilpGG~~~--~~~~~~-~~~~li~~a~~~~ 150 (263)
..+.++..|++++.|+.+. +.+.+++.+++ +..++++.-... ...|.. ..+++++.|.+.+
T Consensus 192 ~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~ 260 (459)
T COG1167 192 ALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYD 260 (459)
T ss_pred HHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 4578999999999999875 35666665553 789999877652 112322 3458888886555
No 381
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.00 E-value=2.9e+02 Score=23.38 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
.+.....+.+++.|..+++.....+.+. +.... .++||+|+.+..
T Consensus 16 ~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 16 RILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3445566788889988877665444321 12222 258999998653
No 382
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.84 E-value=2.7e+02 Score=26.74 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCEEEE-CCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 120 VNGVLY-TGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 120 ~dGlil-pGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
+|.||+ =|||+...-|.-..+.+.+.+.+.. +||+- -.||+
T Consensus 193 ~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~-----~Pvis-~IGHE 234 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWAFNDEAVARAIAASR-----IPVIS-AVGHE 234 (438)
T ss_pred CCEEEEecCCCCHHHhhccCcHHHHHHHHcCC-----CCEEE-eccCC
Confidence 576766 4666654444333457888888888 99984 34554
No 383
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=24.74 E-value=27 Score=32.66 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=31.4
Q ss_pred ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc
Q 024713 118 ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 118 ~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
..+|.|+|.||++. .+....++.+..+.-.+ =|.++-.+||+.++..+-++
T Consensus 290 ~~~d~IiL~GGGA~--ll~~~lk~~f~~~~~~~-----~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 290 NSFDRVIVTGGGAN--IFFDSLSHWYSDVEKAD-----ESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred CCCCEEEEECCcHH--HHHHHHHHHcCCeEEcC-----ChHHHHHHHHHHHHHHHhcc
Confidence 36799999999882 12122222222221122 38889999999999865443
No 384
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=24.62 E-value=59 Score=32.47 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=22.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-----------------ChhhH----HHh--
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-----------------PEDVL----FEK-- 116 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-----------------~~~~l----~~~-- 116 (263)
||+|||.....+...+. .+..-+++...+-++++|+.+..++... +.|.+ +..
T Consensus 1 KP~IgI~ns~~e~~Pc~----~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgi~~g~~GM~ysL~sRelIAd~iE~~~~ 76 (521)
T PF00920_consen 1 KPIIGIVNSWSEINPCH----MHLRELAEAVKEGIRAAGGVPFEFNTIAVCDGIAMGTEGMRYSLPSRELIADSIEEMVR 76 (521)
T ss_dssp ----------------------------------SS---EEEE---B---------SSSGGGGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeccccCCccc----hhHHHHHHHHHHHHHHcCCeEEEECCCcccchhcCCccccchhhhhHHHHHHHHHHHHh
Confidence 79999988775543321 2223344456667888898776655422 11111 111
Q ss_pred cccCCEEEECCCCCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 117 LELVNGVLYTGGWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 117 l~~~dGlilpGG~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
...+||+|+-||=|. -|. .+-.+...| +|-+=+.=|-++=..
T Consensus 77 a~~~Dg~V~l~gCDK~~Pg-------~lMaaarln-----iPsi~v~gGpm~~G~ 119 (521)
T PF00920_consen 77 AHPFDGMVLLGGCDKIVPG-------MLMAAARLN-----IPSIFVYGGPMLPGK 119 (521)
T ss_dssp T---SEEEEE--STTCCHH-------HHHHHHTTT-----S-EEE----------
T ss_pred CCCcceEEEeccCCCccHH-------HHHHHHHcC-----CCEEEEecCCCCCCc
Confidence 224789999888774 232 344445667 887765555544433
No 385
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=24.58 E-value=3.7e+02 Score=21.92 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC---eEEEEecCCChh---hHHHhc--ccCCEEEECC---
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA---RVIPLIYNEPED---VLFEKL--ELVNGVLYTG--- 127 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~---~~v~i~~~~~~~---~l~~~l--~~~dGlilpG--- 127 (263)
.++.|||....- +....+-+...-.+.+++.|+ .+..+...-..| .+..++ .++||+|.-|
T Consensus 2 ~~~ri~IV~s~~--------n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI 73 (144)
T PF00885_consen 2 SGLRIAIVVSRF--------NEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVI 73 (144)
T ss_dssp TTEEEEEEEEST--------THHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE
T ss_pred CCCEEEEEEEec--------cHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEecccc
Confidence 356788876542 222233344456678888887 455554432222 112222 3489998888
Q ss_pred -CCCCChhhH-H-HHHHHHHHHHHhCCCCCcceEE-ec
Q 024713 128 -GWAKDGLYY-A-IVEKVFKKILEKNDAGDHFPLY-AH 161 (263)
Q Consensus 128 -G~~~~~~~~-~-~~~~li~~a~~~~d~g~~~PIL-GI 161 (263)
|......+. . ....+.+..++.+ +||. ||
T Consensus 74 ~G~T~H~~~v~~~v~~gl~~lsl~~~-----~PV~~gv 106 (144)
T PF00885_consen 74 RGETDHFEYVANAVSRGLMDLSLEYG-----IPVIFGV 106 (144)
T ss_dssp --SSTHHHHHHHHHHHHHHHHHHHHT-----SEEEEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCC-----ccEEEEe
Confidence 222111111 1 1247888888888 9974 44
No 386
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=24.43 E-value=3.1e+02 Score=26.77 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCeEEEEec-------CCChhhHHHhccc----CCEEEE-CCCCCCChhhHHHHHHHHHHHHHhCCCCCc
Q 024713 88 ASYVKFVESAGARVIPLIY-------NEPEDVLFEKLEL----VNGVLY-TGGWAKDGLYYAIVEKVFKKILEKNDAGDH 155 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~-------~~~~~~l~~~l~~----~dGlil-pGG~~~~~~~~~~~~~li~~a~~~~d~g~~ 155 (263)
.+..+++..+|++++.++. ..+.+.+++.+.. .-.+++ +++ ...+......+++.+.+.+.+
T Consensus 162 ~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~-t~~~g~~ddL~eIa~la~k~g----- 235 (444)
T TIGR03531 162 KSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS-CFAPRSPDDIEEIAKICANYD----- 235 (444)
T ss_pred HHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC-cCCCcchhCHHHHHHHHHHcC-----
Confidence 4577899999999998883 2255666665542 223333 221 111111223457788887888
Q ss_pred ceEE
Q 024713 156 FPLY 159 (263)
Q Consensus 156 ~PIL 159 (263)
+|+.
T Consensus 236 I~lI 239 (444)
T TIGR03531 236 IPHI 239 (444)
T ss_pred CEEE
Confidence 8875
No 387
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.40 E-value=3e+02 Score=27.04 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=41.6
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-h-hhHHHhcccCCEEEECCCCC
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-E-DVLFEKLELVNGVLYTGGWA 130 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~-~~l~~~l~~~dGlilpGG~~ 130 (263)
+.+.+|.|.|++-|+.+. .+-.+. .+.|...|..+++.....+ . +....+..++++..+|=+..
T Consensus 262 n~~~~P~V~Ilcgpgnng--------gdg~v~---gRHL~~~G~~~vi~~pk~s~~~~~~~~L~~q~~~~~Ip~v~~ 327 (453)
T KOG2585|consen 262 NSHQWPLVAILCGPGNNG--------GDGLVC---GRHLAQHGYTPVIYYPKRSLNVDLYKSLVKQCDGFSIPSVSE 327 (453)
T ss_pred ccCCCceEEEEeCCCCcc--------chhHHH---HHHHHHcCceeEEEeecCccchhHHHHHHHHhcCcccccccc
Confidence 346789999999997532 223332 3678888987766544322 2 34455667788888887765
No 388
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=24.34 E-value=1.5e+02 Score=24.15 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCC
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGW 129 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~ 129 (263)
..++++|+.+|..++..+ +.+.+++......-+.||||-.-
T Consensus 10 ~~Lar~LR~lG~Dt~~~~-~~~D~~il~~A~~e~RillTrd~ 50 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR-DIDDDEILELAREEGRILLTRDR 50 (147)
T ss_pred HHHHHHHHHCCCcEEEeC-CCChHHHHHHhhhCCeEEEECCH
Confidence 457899999999998766 33344444444455889988764
No 389
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=24.13 E-value=3.1e+02 Score=23.24 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=35.1
Q ss_pred chhhhHHHHHHHHHHc-CCeEEEEecCCC--hhhH---------------HHhcccCCEEEECCCCCCChhhHHHHHHHH
Q 024713 82 NASYIAASYVKFVESA-GARVIPLIYNEP--EDVL---------------FEKLELVNGVLYTGGWAKDGLYYAIVEKVF 143 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~-G~~~v~i~~~~~--~~~l---------------~~~l~~~dGlilpGG~~~~~~~~~~~~~li 143 (263)
+..-++..+.+-+++. |+++.++...+. .+.+ .+.+..+|+|+|--. .....+....+.++
T Consensus 13 ~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSP-ty~g~~~~~lk~fl 91 (197)
T TIGR01755 13 HIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTP-TRFGNMASQMRNFL 91 (197)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEec-ccccCccHHHHHHH
Confidence 4556677777788875 888877765321 1111 133567899887433 22222333344555
Q ss_pred HHH
Q 024713 144 KKI 146 (263)
Q Consensus 144 ~~a 146 (263)
+..
T Consensus 92 d~~ 94 (197)
T TIGR01755 92 DQT 94 (197)
T ss_pred Hhc
Confidence 554
No 390
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=24.12 E-value=3.2e+02 Score=23.44 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=35.5
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEec----CCCh----hhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCC
Q 024713 83 ASYIAASYVKFVESAGARVIPLIY----NEPE----DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGD 154 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~----~~~~----~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~ 154 (263)
..-+...+.+.+++.|.....+.. ..+. +.+....+++||+++.+... . .....++.+.+.+
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vdgiii~~~~~--~----~~~~~i~~~~~~~---- 83 (275)
T cd06307 14 YRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAPDH--P----QVRAAVARLAAAG---- 83 (275)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHhcCCEEEEeCCCc--H----HHHHHHHHHHHCC----
Confidence 344555666777777754433321 1122 22222223799999976432 1 1124556666666
Q ss_pred cceEEec
Q 024713 155 HFPLYAH 161 (263)
Q Consensus 155 ~~PILGI 161 (263)
+|+.-+
T Consensus 84 -ipvV~~ 89 (275)
T cd06307 84 -VPVVTL 89 (275)
T ss_pred -CcEEEE
Confidence 777644
No 391
>PRK15453 phosphoribulokinase; Provisional
Probab=24.12 E-value=1.7e+02 Score=27.10 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~ 107 (263)
..|+|||++.++. +.+.+++.+.+.++..|..+.++..+
T Consensus 4 k~piI~ItG~SGs----------GKTTva~~l~~if~~~~~~~~vi~~D 42 (290)
T PRK15453 4 KHPIIAVTGSSGA----------GTTTVKRAFEKIFRRENINAAVVEGD 42 (290)
T ss_pred CCcEEEEECCCCC----------CHHHHHHHHHHHHhhcCCCeEEEecc
Confidence 4599999998864 46788888888887777666666543
No 392
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=23.63 E-value=1.8e+02 Score=26.12 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=24.0
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
-|+|+.|.+... .....++++.+.+.+ ++|+.|..|
T Consensus 168 iIllTDG~~~~~--~~~~~~~~~~~~~~~-----v~vy~I~~~ 203 (296)
T TIGR03436 168 LIVISDGGDNRS--RDTLERAIDAAQRAD-----VAIYSIDAR 203 (296)
T ss_pred EEEEecCCCcch--HHHHHHHHHHHHHcC-----CEEEEeccC
Confidence 577787755221 123346777777777 999999886
No 393
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.59 E-value=4.3e+02 Score=22.17 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhH---HHhc--ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVL---FEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l---~~~l--~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
..+.++++..|.+++...-+.+.+.. .+.+ ..+|+++|-.|-. . ...+++++.+.+ +-|.|+-
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~---D----F~~Lv~~lre~G-----~~V~v~g 136 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA---D----FLPVINKAKENG-----KETIVIG 136 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccH---h----HHHHHHHHHHCC-----CEEEEEe
Confidence 45677899999998755443332211 1223 5679887766633 1 235777877777 7787764
No 394
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=23.56 E-value=3.1e+02 Score=26.03 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=44.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC-CChhhHHHhcccCCEEEECCCCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dGlilpGG~~~ 131 (263)
-.+||+-... .++.+--++..+++.++++|-+++.+-.+ .+++.|.. ++.+|..+.+|=|.+
T Consensus 238 ~~~giiv~tk--------~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~-f~~iD~~v~taCPRi 300 (347)
T COG1736 238 KSFGIIVSTK--------GGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLAN-FDDIDAFVNTACPRI 300 (347)
T ss_pred CeEEEEEecc--------cccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhc-ccceeEEEEecCCCc
Confidence 4677765443 24567778889999999999888776554 34555544 667899999998873
No 395
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.55 E-value=1.2e+02 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=32.7
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
||+.+||.+ |.+-.....+++.+...+ .=|+||=.|.|=|-
T Consensus 6 aIlTSGGda--PGmNa~Iravvr~a~~~g-----~eV~Gi~~Gy~GL~ 46 (347)
T COG0205 6 AILTSGGDA--PGMNAVIRAVVRTAIKEG-----LEVFGIYNGYLGLL 46 (347)
T ss_pred EEEccCCCC--ccHHHHHHHHHHHHHHcC-----CEEEEEecchhhhc
Confidence 566677765 777777789999998887 99999999997554
No 396
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=23.40 E-value=3.5e+02 Score=22.64 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=25.3
Q ss_pred HHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 114 FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 114 ~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
.+.+...||+|+.= |.....+....+..++++-.. .=..+|++-++-|
T Consensus 62 ~~~i~~aD~li~~t-PeYn~s~pg~lKnaiD~l~~~--~~~~Kpv~~~~~s 109 (184)
T COG0431 62 REAIAAADGLIIAT-PEYNGSYPGALKNAIDWLSRE--ALGGKPVLLLGTS 109 (184)
T ss_pred HHHHHhCCEEEEEC-CccCCCCCHHHHHHHHhCCHh--HhCCCcEEEEecC
Confidence 34567789998742 222233334455566655333 1112996665544
No 397
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.27 E-value=4e+02 Score=23.18 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=58.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh--hhHHHhcccCCEEEECCCCCCChhh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~--~~l~~~l~~~dGlilpGG~~~~~~~ 135 (263)
...++|.|+..... ... ....+.+.+.|.+++-+.++.+. +.+..+.+++..+++--|--.++.-
T Consensus 13 ~~~~~iaV~r~~~~-----------~~a--~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~ 79 (212)
T PRK05718 13 RAGPVVPVIVINKL-----------EDA--VPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQ 79 (212)
T ss_pred HHCCEEEEEEcCCH-----------HHH--HHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHH
Confidence 35688888875521 222 34778899999999888876542 2333333334444443333222221
Q ss_pred HHH--------------HHHHHHHHHHhCCCCCcceEE-eccchhHHHHH-HHcCc
Q 024713 136 YAI--------------VEKVFKKILEKNDAGDHFPLY-AHCLGFELLTM-IISKD 175 (263)
Q Consensus 136 ~~~--------------~~~li~~a~~~~d~g~~~PIL-GIClG~QlL~~-~~GG~ 175 (263)
.+. ..++++++.+.+ +|++ |++-=-++... .+|.+
T Consensus 80 a~~a~~aGA~FivsP~~~~~vi~~a~~~~-----i~~iPG~~TptEi~~a~~~Ga~ 130 (212)
T PRK05718 80 LAQAIEAGAQFIVSPGLTPPLLKAAQEGP-----IPLIPGVSTPSELMLGMELGLR 130 (212)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CCEeCCCCCHHHHHHHHHCCCC
Confidence 111 248999999988 9999 98755554432 34554
No 398
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.22 E-value=3.3e+02 Score=20.43 Aligned_cols=44 Identities=23% Similarity=0.089 Sum_probs=31.1
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECC
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
..|.+.....+.+++.|..+.+... +..++.+....+|-|+++.
T Consensus 15 sSS~l~~k~~~~~~~~gi~~~v~a~--~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 15 STSLLVNKMNKAAEEYGVPVKIAAG--SYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEe--cHHHHHhhcCCCCEEEECc
Confidence 3677888888999999987766544 3344555567889777653
No 399
>PRK10342 glycerate kinase I; Provisional
Probab=23.19 E-value=88 Score=30.01 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=30.7
Q ss_pred hHHHhcccCCEEEECCCCCCCh-hhHHH-HHHHHHHHHHhCCCCCcceEEecc
Q 024713 112 VLFEKLELVNGVLYTGGWAKDG-LYYAI-VEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 112 ~l~~~l~~~dGlilpGG~~~~~-~~~~~-~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+++.++.+| +||+|=+.++. ...+. .-.+.+.+.+.+ +|+..||
T Consensus 277 ~l~~~l~~AD-LVITGEG~~D~QTl~GK~p~gVa~~A~~~~-----vPviai~ 323 (381)
T PRK10342 277 NLEEHIHDCT-LVITGEGRIDSQSIHGKVPIGVANVAKKYH-----KPVIGIA 323 (381)
T ss_pred CHHHHhccCC-EEEECCCcCcccccCCccHHHHHHHHHHhC-----CCEEEEe
Confidence 3456688888 67788665432 12222 237888888888 9999999
No 400
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=23.11 E-value=3e+02 Score=27.04 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCeEEEEecCCChh---hH---------------HHhcccCCEEEECCCCCCC
Q 024713 89 SYVKFVESAGARVIPLIYNEPED---VL---------------FEKLELVNGVLYTGGWAKD 132 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~---~l---------------~~~l~~~dGlilpGG~~~~ 132 (263)
+.+++|.+.|+++....-....+ .. ...+..+|-||++.|-..+
T Consensus 21 a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 21 AAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred HHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCC
Confidence 46789999999887765332220 00 0124457899998886543
No 401
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=23.10 E-value=3.5e+02 Score=24.46 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH--HHHHHHHHHHHHhC
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~--~~~~~li~~a~~~~ 150 (263)
+|...++..|.+++.++ +.+.+.+.+++.+.++++--....+..+ ...+++.+.+.+.+
T Consensus 98 ~~~~~~~~~g~~~~~~~---d~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~ 158 (330)
T TIGR01140 98 EYARAWRAAGHEVVELP---DLDRLPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARG 158 (330)
T ss_pred HHHHHHHHcCCEEEEeC---CHHHHHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcC
Confidence 35567888999888776 5666776677778777754322111111 12345666665444
No 402
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=23.05 E-value=1.2e+02 Score=30.69 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=30.2
Q ss_pred CEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHH
Q 024713 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELL 168 (263)
Q Consensus 121 dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL 168 (263)
=|||++||.+ |.+-.....+++++...+ .+ .-++|+-.|++=|
T Consensus 99 IGIv~sGG~A--PG~nnvI~Gv~~~a~~~~-~~--~~vyG~~~G~~GL 141 (568)
T PLN02251 99 IGVVLSGGQA--PGGHNVISGIFDYLQEHA-KG--SVLYGFKGGPAGI 141 (568)
T ss_pred EEEECcCCCc--hhHHHHHHHHHHHHHHhC-CC--CEEEEEccChHHh
Confidence 4899999987 666555667888876542 11 6788998888644
No 403
>PRK14071 6-phosphofructokinase; Provisional
Probab=22.71 E-value=1.3e+02 Score=28.61 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=29.7
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHh-CCCCCcceEEeccchhHHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEK-NDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~-~d~g~~~PILGIClG~QlL~~ 170 (263)
+|+.+||+. |.+-.....+++++.+. + .=|+|+-.|+.=|..
T Consensus 8 ~IltsGG~a--pGmNa~i~~vv~~a~~~~g-----~~v~G~~~G~~GL~~ 50 (360)
T PRK14071 8 GILTSGGDC--AGLNAVIRAVVHRARGTYG-----WEVIGIRDATQGLMA 50 (360)
T ss_pred EEECCCCCc--hhHHHHHHHHHHHHHhcCC-----CEEEEEecChHHHhc
Confidence 455555654 65555556888888764 6 789999999976653
No 404
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=22.70 E-value=3.5e+02 Score=23.71 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChhhH-HHhcccCCEEEEC---CCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPEDVL-FEKLELVNGVLYT---GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~~l-~~~l~~~dGlilp---GG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
-|-..+...|++.|+.|..-.++.+...+ ++.|+++|.||+- ++...++. ..+.+.++ ++.+ .=+.|
T Consensus 23 ~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~e---q~~~l~~~-V~~G-----gGlv~ 93 (215)
T cd03142 23 GMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKDE---IVERVHRR-VLDG-----MGLIV 93 (215)
T ss_pred hHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCHH---HHHHHHHH-HHcC-----CCEEE
Confidence 35555667899999888755444321111 2247889999983 22223221 22344444 4556 55666
Q ss_pred ccchh
Q 024713 161 HCLGF 165 (263)
Q Consensus 161 IClG~ 165 (263)
+=-|+
T Consensus 94 lHsg~ 98 (215)
T cd03142 94 LHSGH 98 (215)
T ss_pred ECCCc
Confidence 65455
No 405
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=22.66 E-value=1.3e+02 Score=26.91 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCeEEEEecCC----ChhhHH---HhcccCCEEEECCCCC
Q 024713 88 ASYVKFVESAGARVIPLIYNE----PEDVLF---EKLELVNGVLYTGGWA 130 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~----~~~~l~---~~l~~~dGlilpGG~~ 130 (263)
..+.+.|++.|+.++.+|.-. +...+. ..+..+|.|||+...+
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA 80 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA 80 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH
Confidence 457789999999998877521 111111 2356899999998755
No 406
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=22.56 E-value=1e+02 Score=29.14 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.++-|+.+|.+..++. .+.+...+.-+|.||=-||-+ .+.... .++++.. +||+||
T Consensus 80 ~~~~l~k~giesklv~----R~~lsq~i~waD~VisvGGDG---TfL~Aa----srv~~~~-----~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVS----RNDLSQPIRWADMVISVGGDG---TFLLAA----SRVIDDS-----KPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeee----hhhccCcCchhhEEEEecCcc---ceeehh----hhhhccC-----Cceeee
Confidence 4556677888766653 233444467789998888854 221111 1133455 999997
No 407
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=22.49 E-value=82 Score=26.54 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=51.7
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCcceEEec-cchhHHHHHHHcCccccccccc-CCCcceeeE--EeecCCCCCcccccC
Q 024713 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAH-CLGFELLTMIISKDKNILESFN-AADQASTLQ--FMENTSIEGTVFQRF 207 (263)
Q Consensus 132 ~~~~~~~~~~li~~a~~~~d~g~~~PILGI-ClG~QlL~~~~GG~~~~l~~~~-~~~~~~pl~--~~~~~~~~s~Lf~~l 207 (263)
.|. |+..+.++++..+++ +=|||. |. |.++..-|...++..-.. .-+.+.|+. ...++...++||+-+
T Consensus 40 TpQ-YegLe~Ly~ky~~~G-----f~VLgFPcN--QF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L 111 (162)
T COG0386 40 TPQ-YEGLEALYKKYKDKG-----FEVLGFPCN--QFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYL 111 (162)
T ss_pred cHh-HHHHHHHHHHHhhCC-----cEEEecccc--ccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHH
Confidence 454 445678888887777 999997 63 334444433323322221 123445552 233444467888866
Q ss_pred ChhhhhhcCCCceeEEEecceecC
Q 024713 208 PPKLIKKLSTDCLVMQNHHYGISP 231 (263)
Q Consensus 208 p~~~~~~l~~~~~~~~~Hs~~V~p 231 (263)
..+-.-.+..+.+-+|++.+-|..
T Consensus 112 ~~~~~g~~~~~~IkWNFtKFLvdr 135 (162)
T COG0386 112 KEQKPGKLGGKDIKWNFTKFLVDR 135 (162)
T ss_pred HhcCCCCccCCccceeeEEEEEcC
Confidence 544322234566778888887754
No 408
>PRK02399 hypothetical protein; Provisional
Probab=22.43 E-value=2.8e+02 Score=26.94 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhcc--cCCEEEECCCCCCC-
Q 024713 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLE--LVNGVLYTGGWAKD- 132 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~--~~dGlilpGG~~~~- 132 (263)
...||+|||++-=-+ ..++. ...+.||+.|.++.+++-+-. -...+++++ .++||+ ++.
T Consensus 183 ~~~kp~Ig~TmfGvT-----------tp~v~-~~~~~Le~~GyEvlVFHATG~GGraME~Li~~G~~~gVl-----DlTt 245 (406)
T PRK02399 183 SDDKPLIGLTMFGVT-----------TPCVQ-AAREELEARGYEVLVFHATGTGGRAMEKLIDSGLIAGVL-----DLTT 245 (406)
T ss_pred CCCCceEEEecCCCc-----------HHHHH-HHHHHHHhCCCeEEEEcCCCCchHHHHHHHHcCCceEEE-----Ecch
Confidence 458999999884322 34554 367799999999998876532 112222222 356665 211
Q ss_pred hhhHHH--------HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc
Q 024713 133 GLYYAI--------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 133 ~~~~~~--------~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
.++.+. ..+=++.+.+.+ +|-...|=++-+++ ||..
T Consensus 246 tEv~d~l~GGv~sagp~Rl~Aa~~~g-----IP~Vvs~GalDmVn--Fg~~ 289 (406)
T PRK02399 246 TEVCDELFGGVLAAGPDRLEAAARTG-----IPQVVSPGALDMVN--FGAP 289 (406)
T ss_pred HHHHHHHhCcCccCCccHHHHHHHcC-----CCEEecCCceeeee--cCCc
Confidence 111111 023456677788 99998887766664 4554
No 409
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=22.27 E-value=3.7e+02 Score=26.17 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHcCCeEEEEecC--------------CChhhHHHhcc-----cCCEEEEC------CCCCCChhhHHHHHHHHH
Q 024713 90 YVKFVESAGARVIPLIYN--------------EPEDVLFEKLE-----LVNGVLYT------GGWAKDGLYYAIVEKVFK 144 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~--------------~~~~~l~~~l~-----~~dGlilp------GG~~~~~~~~~~~~~li~ 144 (263)
|...++.+|++++.++.+ -+.+.+++.+. +...|++. ||...+ ....+++.+
T Consensus 129 ~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s---~~~l~~I~~ 205 (460)
T PRK13238 129 TRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVS---MANLRAVYE 205 (460)
T ss_pred hHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCC---HHHHHHHHH
Confidence 445678899999887763 24455655554 34566662 332222 233457777
Q ss_pred HHHHhCCCCCcceEE
Q 024713 145 KILEKNDAGDHFPLY 159 (263)
Q Consensus 145 ~a~~~~d~g~~~PIL 159 (263)
.+.+.+ ++++
T Consensus 206 ia~~~g-----i~li 215 (460)
T PRK13238 206 IAKKYG-----IPVV 215 (460)
T ss_pred HHHHcC-----CEEE
Confidence 777777 7775
No 410
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=22.21 E-value=5.7e+02 Score=24.39 Aligned_cols=84 Identities=8% Similarity=0.115 Sum_probs=45.5
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhc-ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE---eccchh
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY---AHCLGF 165 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l-~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL---GIClG~ 165 (263)
-++||++.---++++.--.+.++..... ..+|+|+++|-+.-...+.-.....+..+.+.- ++.+||+ ||..|.
T Consensus 215 di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av--~~~~~vi~dGGIr~G~ 292 (367)
T PLN02493 215 DVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKAT--QGRIPVFLDGGVRRGT 292 (367)
T ss_pred HHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHh--CCCCeEEEeCCcCcHH
Confidence 4678887644445544333444433322 368999999976532111111112222222210 1228988 999999
Q ss_pred HHHHH-HHcCc
Q 024713 166 ELLTM-IISKD 175 (263)
Q Consensus 166 QlL~~-~~GG~ 175 (263)
.++-. ++|.+
T Consensus 293 Dv~KALALGA~ 303 (367)
T PLN02493 293 DVFKALALGAS 303 (367)
T ss_pred HHHHHHHcCCC
Confidence 98866 46765
No 411
>PRK06696 uridine kinase; Validated
Probab=22.18 E-value=2.3e+02 Score=24.31 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI 105 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~ 105 (263)
...+|||.+.++. +.+.+++.+.+.+...|..++.++
T Consensus 21 ~~~iI~I~G~sgs----------GKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 21 RPLRVAIDGITAS----------GKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEec
Confidence 4568999998864 467888888888888787776655
No 412
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=21.98 E-value=4e+02 Score=22.23 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCC-------hhhHHHhcccCCEEEECCCCC
Q 024713 88 ASYVKFVESAGARVIPLIYNEP-------EDVLFEKLELVNGVLYTGGWA 130 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~-------~~~l~~~l~~~dGlilpGG~~ 130 (263)
..+.+.+++.|+.++.+|.-.. .......+..+|+|+|+-..+
T Consensus 11 ~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~a 60 (239)
T cd06578 11 DELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNA 60 (239)
T ss_pred HHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHH
Confidence 3466789999999988774322 122222345789999997755
No 413
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=21.85 E-value=3.3e+02 Score=23.18 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChh
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~ 134 (263)
..+.++|++.|..+.+++.+. .++.+.-||+|.-...++.
T Consensus 33 ~~~y~al~~~gi~vDvv~~~~-------dL~~Ykllv~P~~~~l~~~ 72 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPDD-------DLSGYKLLVLPSLYILSPE 72 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TTS---------TT-SEEEES--SC--HH
T ss_pred HHHHHHHHHcCCceEEecCcC-------CcccCcEEEEeeEEEEChH
Confidence 457789999999999997653 2678999999988665543
No 414
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.60 E-value=2.9e+02 Score=23.86 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=54.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--hhhHHHhcccCCEEEECCCCCCChhhHH
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
.++|.|+..... .. +....+++-+.|.+++-+.++.+ .+.+....+++..+++--|.-.+....+
T Consensus 8 ~~iiaVir~~~~-----------~~--a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~ 74 (196)
T PF01081_consen 8 NKIIAVIRGDDP-----------ED--AVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAE 74 (196)
T ss_dssp HSEEEEETTSSG-----------GG--HHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHH
T ss_pred CCEEEEEEcCCH-----------HH--HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHH
Confidence 477888775531 12 34578899999999998888764 2333333334445554333333333222
Q ss_pred H--------------HHHHHHHHHHhCCCCCcceEE-eccchhHHHHHH-HcCc
Q 024713 138 I--------------VEKVFKKILEKNDAGDHFPLY-AHCLGFELLTMI-ISKD 175 (263)
Q Consensus 138 ~--------------~~~li~~a~~~~d~g~~~PIL-GIClG~QlL~~~-~GG~ 175 (263)
. .+++++++.+.+ +|++ |++-=-+++... +|.+
T Consensus 75 ~a~~aGA~FivSP~~~~~v~~~~~~~~-----i~~iPG~~TptEi~~A~~~G~~ 123 (196)
T PF01081_consen 75 AAIAAGAQFIVSPGFDPEVIEYAREYG-----IPYIPGVMTPTEIMQALEAGAD 123 (196)
T ss_dssp HHHHHT-SEEEESS--HHHHHHHHHHT-----SEEEEEESSHHHHHHHHHTT-S
T ss_pred HHHHcCCCEEECCCCCHHHHHHHHHcC-----CcccCCcCCHHHHHHHHHCCCC
Confidence 1 358999999999 9988 444444444333 4444
No 415
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=21.52 E-value=3e+02 Score=25.11 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=36.9
Q ss_pred HHHHcCCeEEEEecCCChhhHHHhcccC-CEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 93 FVESAGARVIPLIYNEPEDVLFEKLELV-NGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 93 ~le~~G~~~v~i~~~~~~~~l~~~l~~~-dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
.-.+.|+.++-..|+.+.+..++..+.+ -.||+.||+...+. +...+..+.+++++
T Consensus 174 laaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~~~~--~~~l~~~~~ai~aG 230 (265)
T COG1830 174 LAAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKTETE--REFLEMVTAAIEAG 230 (265)
T ss_pred HHHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCCCCh--HHHHHHHHHHHHcc
Confidence 3356899999999988777666655443 68999999875222 22334555555544
No 416
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.49 E-value=3.1e+02 Score=25.04 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec--CCChhhHHHhcc------cCCEEEEC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY--NEPEDVLFEKLE------LVNGVLYT 126 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~--~~~~~~l~~~l~------~~dGlilp 126 (263)
.+|...|..--.+. ....|+. ...+++++.|.....++. +.+.+++.+.++ .++|++++
T Consensus 32 ~~p~L~~i~vg~~~--------~s~~Y~~-~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vq 98 (283)
T PRK14192 32 RTPILATILVGDDP--------ASATYVR-MKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQ 98 (283)
T ss_pred CCCeEEEEEeCCCh--------hHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 56877665533322 2356664 467899999999888877 444454443332 36788875
No 417
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.47 E-value=2.9e+02 Score=23.99 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh--hhHHHhcccCCEEEECCCCCCChhh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--DVLFEKLELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~--~~l~~~l~~~dGlilpGG~~~~~~~ 135 (263)
...|+|.|+..... .. +....+.+.+.|.+++.+.++.+. +.+....+++..+++--|.-.++.-
T Consensus 6 ~~~~liaVlr~~~~-----------e~--a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~ 72 (204)
T TIGR01182 6 REAKIVPVIRIDDV-----------DD--ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQ 72 (204)
T ss_pred hhCCEEEEEecCCH-----------HH--HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 45688888875521 12 234778999999999988876532 3334433445555554444333322
Q ss_pred HHH--------------HHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 136 YAI--------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 136 ~~~--------------~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
.+. ..++++++.+.+ +|.+==|.=.--+.
T Consensus 73 a~~a~~aGA~FivsP~~~~~v~~~~~~~~-----i~~iPG~~TptEi~ 115 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPGLTPELAKHAQDHG-----IPIIPGVATPSEIM 115 (204)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHcC-----CcEECCCCCHHHHH
Confidence 221 258999999888 88875344333333
No 418
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=21.33 E-value=97 Score=29.59 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=28.6
Q ss_pred hHHHhcccCCEEEECCCCCCChhhHHHH-HHHHHHHHHhCCCCCcceEEecc
Q 024713 112 VLFEKLELVNGVLYTGGWAKDGLYYAIV-EKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 112 ~l~~~l~~~dGlilpGG~~~~~~~~~~~-~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+++.++.+|-||.-=|....-...+.. -.+-+.+.+.+ +|+.+||
T Consensus 277 ~le~~v~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~-----vPvIaia 323 (378)
T COG1929 277 NLEDAVKDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYG-----VPVIAIA 323 (378)
T ss_pred CHHHhhccCCEEEeCCCcccccccCCccchHHHHhhhhhC-----CCEEEEe
Confidence 3456677888776544543111222222 36777887788 9999999
No 419
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=21.32 E-value=81 Score=25.79 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=35.5
Q ss_pred HHHHHHHcCCeEEEEecCC----------ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHH
Q 024713 90 YVKFVESAGARVIPLIYNE----------PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~----------~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~ 147 (263)
+++.+++.+.++.++..+. +.+...+.++.+|.+++||---.+. +.+++++.+.
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~~ 86 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNG----TIDDILELAR 86 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTT----THHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecC----CHHHHHHhCc
Confidence 4456777788888876554 2334566788999999999865433 2456777664
No 420
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.28 E-value=4.3e+02 Score=21.08 Aligned_cols=56 Identities=13% Similarity=-0.082 Sum_probs=36.9
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHh--cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEK--LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~--l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
.+|+.+|++|+......+.++.-+. -.++|.|.+++=. ..+....+++++...+++
T Consensus 24 ~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~---~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 24 TAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA---GGHLTLVPALRKELDKLG 81 (132)
T ss_pred HHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch---hhhHHHHHHHHHHHHhcC
Confidence 4789999999988776666555322 2357888887653 234444567777766654
No 421
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.79 E-value=1.5e+02 Score=27.65 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=30.2
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
||+.+||+. |.+-.....+++++.+.+ .-++|+-.|+.=|.
T Consensus 5 ~Il~sGG~a--pG~Na~i~~~~~~~~~~g-----~~v~g~~~G~~GL~ 45 (320)
T PRK03202 5 GVLTSGGDA--PGMNAAIRAVVRTAISEG-----LEVYGIYDGYAGLL 45 (320)
T ss_pred EEECCCCCc--HHHHHHHHHHHHHHHHCC-----CeEEEEecChhhhc
Confidence 566677765 665555567888887776 78999999997554
No 422
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=20.70 E-value=3.3e+02 Score=23.77 Aligned_cols=62 Identities=13% Similarity=-0.024 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHH-hcccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFE-KLELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~-~l~~~dGlilpGG 128 (263)
..-+||++..... .....-+.....+++++.|..+.......+.+. ++. .-.++||||+.+.
T Consensus 34 ~~~~ig~v~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 34 ESRTILVIVPDIC--------DPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CCcEEEEEeCCCc--------CccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4468999874321 112233445567788888988877654433221 111 1236899999765
No 423
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.66 E-value=3.8e+02 Score=20.21 Aligned_cols=73 Identities=16% Similarity=-0.099 Sum_probs=36.6
Q ss_pred chhhhHHHHH-HHHHHcC-CeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 82 NASYIAASYV-KFVESAG-ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 82 ~~s~i~~s~v-~~le~~G-~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
+.++..+.+. ..+.+.| ..+..+. ..........+.+-|-+|+---.. ...+..+.++.+.+++ .|++
T Consensus 8 G~S~~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~I~iS~sG----~t~e~~~~~~~a~~~g-----~~vi 77 (126)
T cd05008 8 GTSYHAALVAKYLLERLAGIPVEVEA-ASEFRYRRPLLDEDTLVIAISQSG----ETADTLAALRLAKEKG-----AKTV 77 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEe-hhHhhhcCCCCCCCcEEEEEeCCc----CCHHHHHHHHHHHHcC-----CeEE
Confidence 3556555544 4567666 4554443 111111111123345444433222 1123446788888888 9999
Q ss_pred eccch
Q 024713 160 AHCLG 164 (263)
Q Consensus 160 GIClG 164 (263)
+|+-.
T Consensus 78 ~iT~~ 82 (126)
T cd05008 78 AITNV 82 (126)
T ss_pred EEECC
Confidence 99843
No 424
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=20.63 E-value=1.7e+02 Score=26.73 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=25.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~ 107 (263)
...+|||+..|+. ...+++ ..+++.+++.|-+|-++-.+
T Consensus 28 ~a~~iGiTG~PGa---------GKSTli-~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 28 RAHVIGITGPPGA---------GKSTLI-DALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp -SEEEEEEE-TTS---------SHHHHH-HHHHHHHHHTT--EEEEEE-
T ss_pred CceEEEeeCCCCC---------cHHHHH-HHHHHHHhhcCCceEEEEEC
Confidence 4579999999974 234455 46888888889888777654
No 425
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.59 E-value=1.8e+02 Score=22.72 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec--CCChhhHHHhc------ccCCEEEE
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY--NEPEDVLFEKL------ELVNGVLY 125 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~--~~~~~~l~~~l------~~~dGlil 125 (263)
+.+|..+|..--.+ .....|+. +-.+..++.|..+..+.+ +.+.+++.+.+ ..++||++
T Consensus 27 ~~~P~Laii~vg~d--------~~S~~Y~~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 27 GITPKLAIILVGDD--------PASISYVR-SKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp T---EEEEEEES----------HHHHHHHH-HHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred CCCcEEEEEecCCC--------hhHHHHHH-HHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 46687776653322 12244553 466788999988876665 34444443333 24799987
No 426
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=20.38 E-value=6.4e+02 Score=22.74 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=41.5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC-eEEEEecCCChh----hHHHhc-ccCCEEEECCCCCCCh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNEPED----VLFEKL-ELVNGVLYTGGWAKDG 133 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~-~~v~i~~~~~~~----~l~~~l-~~~dGlilpGG~~~~~ 133 (263)
.-+||++..... .....-+.....+.+++.|. .++......+.+ .+.... .++||+|+.+....
T Consensus 24 ~~~Igvv~~~~~--------~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-- 93 (330)
T PRK15395 24 DTRIGVTIYKYD--------DNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA-- 93 (330)
T ss_pred CceEEEEEecCc--------chHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHH--
Confidence 367898764211 11223344556677777764 444433322221 222222 36999999765321
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
.....++.+.+.+ +|+.=
T Consensus 94 ----~~~~~l~~l~~~g-----iPvV~ 111 (330)
T PRK15395 94 ----AAPTVIEKARGQD-----VPVVF 111 (330)
T ss_pred ----HHHHHHHHHHHCC-----CcEEE
Confidence 0123455555556 77643
No 427
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.17 E-value=4.2e+02 Score=25.73 Aligned_cols=17 Identities=0% Similarity=-0.136 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCeEEEEe
Q 024713 89 SYVKFVESAGARVIPLI 105 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~ 105 (263)
+..++|.+.|+.+++..
T Consensus 22 ~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 22 AAYRALRAHLPAQALTL 38 (468)
T ss_pred HHHHHHHHcCCEEEEEc
Confidence 45678888998887754
Done!