Query 024713
Match_columns 263
No_of_seqs 275 out of 2164
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 100.0 1.1E-30 3.9E-35 239.3 10.5 213 44-262 14-228 (315)
2 3fij_A LIN1909 protein; 11172J 99.9 2.1E-25 7.4E-30 198.1 15.8 168 58-252 2-197 (254)
3 2vpi_A GMP synthase; guanine m 99.8 5E-20 1.7E-24 160.2 9.6 153 60-262 24-176 (218)
4 2a9v_A GMP synthase; structura 99.8 1.3E-19 4.5E-24 156.7 9.1 136 83-252 23-160 (212)
5 1qdl_B Protein (anthranilate s 99.8 1.8E-18 6.3E-23 147.3 13.7 135 88-251 15-154 (195)
6 1i1q_B Anthranilate synthase c 99.8 5.6E-18 1.9E-22 143.8 16.0 137 84-250 11-149 (192)
7 1wl8_A GMP synthase [glutamine 99.8 2E-18 6.9E-23 146.0 12.7 134 88-252 14-147 (189)
8 1gpm_A GMP synthetase, XMP ami 99.8 7.5E-19 2.6E-23 170.9 9.1 157 59-252 6-162 (525)
9 1o1y_A Conserved hypothetical 99.8 3.4E-18 1.1E-22 150.5 11.7 136 89-252 28-168 (239)
10 2w7t_A CTP synthetase, putativ 99.7 3.9E-18 1.3E-22 153.0 11.3 177 61-262 9-219 (273)
11 3tqi_A GMP synthase [glutamine 99.7 1.2E-18 4.2E-23 169.5 7.7 155 60-251 10-164 (527)
12 3m3p_A Glutamine amido transfe 99.7 7.8E-18 2.7E-22 149.4 11.3 138 88-252 18-158 (250)
13 4gud_A Imidazole glycerol phos 99.7 8.8E-18 3E-22 144.1 9.6 145 84-262 13-174 (211)
14 3uow_A GMP synthetase; structu 99.7 8.5E-18 2.9E-22 164.5 10.2 144 83-252 17-190 (556)
15 2ywb_A GMP synthase [glutamine 99.7 2.2E-18 7.4E-23 166.8 5.8 138 82-252 8-145 (503)
16 3l7n_A Putative uncharacterize 99.7 1.9E-17 6.6E-22 145.1 11.3 138 89-252 16-161 (236)
17 1a9x_B Carbamoyl phosphate syn 99.7 3.4E-17 1.2E-21 153.2 12.3 131 88-252 202-332 (379)
18 2ywd_A Glutamine amidotransfer 99.7 5.8E-17 2E-21 136.7 7.1 90 59-174 1-93 (191)
19 2ywj_A Glutamine amidotransfer 99.7 5.1E-17 1.8E-21 136.8 5.8 125 89-252 14-148 (186)
20 2vxo_A GMP synthase [glutamine 99.7 7.6E-17 2.6E-21 161.3 7.4 136 83-250 39-174 (697)
21 3d54_D Phosphoribosylformylgly 99.6 2E-15 6.9E-20 129.1 13.5 155 60-260 2-172 (213)
22 2v4u_A CTP synthase 2; pyrimid 99.6 2.1E-15 7.3E-20 136.3 11.4 161 59-252 24-232 (289)
23 1gpw_B Amidotransferase HISH; 99.6 1.4E-15 4.8E-20 129.5 8.9 141 88-260 14-165 (201)
24 3r75_A Anthranilate/para-amino 99.6 7.6E-15 2.6E-19 145.7 12.1 138 82-252 455-596 (645)
25 1ka9_H Imidazole glycerol phos 99.6 6.8E-15 2.3E-19 125.4 10.2 75 88-174 16-97 (200)
26 1vco_A CTP synthetase; tetrame 99.6 1.1E-14 3.9E-19 141.7 10.7 108 58-179 298-408 (550)
27 1q7r_A Predicted amidotransfer 99.5 3.6E-15 1.2E-19 129.1 6.2 94 55-175 18-114 (219)
28 1jvn_A Glutamine, bifunctional 99.5 1.5E-14 5.1E-19 141.5 5.9 167 60-262 4-185 (555)
29 2iss_D Glutamine amidotransfer 99.5 1.9E-13 6.7E-18 117.2 11.2 73 88-175 33-111 (208)
30 2abw_A PDX2 protein, glutamina 99.5 4.2E-14 1.5E-18 122.7 6.8 89 60-175 3-100 (227)
31 2nv0_A Glutamine amidotransfer 99.5 1.6E-13 5.5E-18 116.3 9.6 127 90-250 16-152 (196)
32 1s1m_A CTP synthase; CTP synth 99.4 1.9E-13 6.5E-18 133.0 8.8 100 59-178 288-395 (545)
33 3nva_A CTP synthase; rossman f 99.4 8.2E-13 2.8E-17 127.4 9.1 100 59-176 292-400 (535)
34 2vdj_A Homoserine O-succinyltr 99.2 1.3E-10 4.4E-15 105.6 12.7 118 117-256 97-219 (301)
35 2h2w_A Homoserine O-succinyltr 99.1 2.4E-10 8.1E-15 104.2 11.8 116 117-255 109-229 (312)
36 3ugj_A Phosphoribosylformylgly 98.8 5.6E-09 1.9E-13 110.3 8.4 94 59-171 1046-1152(1303)
37 3l4e_A Uncharacterized peptida 98.7 4.6E-08 1.6E-12 84.1 7.7 97 60-171 27-129 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.6 7.4E-08 2.5E-12 83.9 7.9 95 59-171 30-129 (229)
39 1oi4_A Hypothetical protein YH 98.1 1.4E-05 4.8E-10 67.1 9.8 97 59-171 22-134 (193)
40 4hcj_A THIJ/PFPI domain protei 97.7 9.5E-05 3.3E-09 61.7 7.4 97 59-171 7-117 (177)
41 3l18_A Intracellular protease 97.6 0.00019 6.6E-09 58.3 8.3 95 61-171 3-111 (168)
42 2rk3_A Protein DJ-1; parkinson 97.5 0.00029 9.8E-09 59.0 7.7 96 60-171 3-115 (197)
43 2vrn_A Protease I, DR1199; cys 97.4 0.00057 2E-08 56.6 9.1 96 60-171 9-124 (190)
44 1vhq_A Enhancing lycopene bios 97.4 0.00064 2.2E-08 58.5 9.2 81 90-175 30-154 (232)
45 4e08_A DJ-1 beta; flavodoxin-l 97.3 0.00075 2.6E-08 56.1 8.7 98 58-171 3-116 (190)
46 2ab0_A YAJL; DJ-1/THIJ superfa 97.2 0.00041 1.4E-08 58.6 5.9 95 61-171 3-116 (205)
47 3ttv_A Catalase HPII; heme ori 97.1 0.0016 5.5E-08 65.2 9.7 96 59-171 599-708 (753)
48 3ej6_A Catalase-3; heme, hydro 97.1 0.0038 1.3E-07 62.1 12.1 96 61-171 538-646 (688)
49 3efe_A THIJ/PFPI family protei 97.1 0.0026 9E-08 53.9 9.7 95 61-171 6-121 (212)
50 3l3b_A ES1 family protein; ssg 97.0 0.0024 8.2E-08 55.7 8.8 78 90-172 47-168 (242)
51 2fex_A Conserved hypothetical 97.0 0.00083 2.8E-08 55.7 5.4 94 62-171 3-110 (188)
52 3uk7_A Class I glutamine amido 96.8 0.0033 1.1E-07 58.1 8.1 96 58-171 203-330 (396)
53 3cne_A Putative protease I; st 96.7 0.0017 5.8E-08 53.0 4.8 49 118-171 65-120 (175)
54 3uk7_A Class I glutamine amido 96.6 0.0044 1.5E-07 57.3 7.9 95 59-171 11-137 (396)
55 3ot1_A 4-methyl-5(B-hydroxyeth 96.6 0.0031 1.1E-07 53.3 5.8 97 59-171 8-121 (208)
56 2iuf_A Catalase; oxidoreductas 96.5 0.012 4E-07 58.7 10.3 97 61-171 530-648 (688)
57 3kkl_A Probable chaperone prot 96.4 0.011 3.7E-07 51.5 8.6 49 118-171 97-147 (244)
58 3f5d_A Protein YDEA; unknow pr 96.4 0.0036 1.2E-07 53.0 5.2 94 61-171 4-109 (206)
59 3n7t_A Macrophage binding prot 96.4 0.019 6.3E-07 50.2 9.8 49 118-171 104-154 (247)
60 3ewn_A THIJ/PFPI family protei 96.3 0.0087 3E-07 52.4 7.3 97 59-171 22-133 (253)
61 1n57_A Chaperone HSP31, protei 96.2 0.035 1.2E-06 49.4 10.7 50 117-171 143-194 (291)
62 3fse_A Two-domain protein cont 96.2 0.012 4.1E-07 54.4 7.8 96 60-171 10-121 (365)
63 3er6_A Putative transcriptiona 96.1 0.0097 3.3E-07 50.3 6.6 50 117-171 72-124 (209)
64 3gra_A Transcriptional regulat 96.1 0.0064 2.2E-07 51.1 5.3 49 117-171 69-117 (202)
65 3noq_A THIJ/PFPI family protei 96.1 0.0094 3.2E-07 51.3 6.3 95 60-171 5-113 (231)
66 1sy7_A Catalase 1; heme oxidat 95.9 0.023 7.8E-07 56.9 9.1 97 61-173 535-646 (715)
67 3mgk_A Intracellular protease/ 95.9 0.0082 2.8E-07 50.9 4.9 95 61-171 5-113 (211)
68 3en0_A Cyanophycinase; serine 95.9 0.021 7.2E-07 51.2 7.7 95 60-170 56-160 (291)
69 1u9c_A APC35852; structural ge 95.7 0.0057 2E-07 51.8 3.2 77 90-171 34-138 (224)
70 1rw7_A YDR533CP; alpha-beta sa 95.3 0.0081 2.8E-07 51.9 2.7 49 118-171 97-147 (243)
71 4gdh_A DJ-1, uncharacterized p 93.3 0.1 3.4E-06 43.4 5.1 73 90-168 23-120 (194)
72 3bhn_A THIJ/PFPI domain protei 90.3 0.18 6.1E-06 43.5 3.4 92 61-171 21-128 (236)
73 3h75_A Periplasmic sugar-bindi 85.8 3.8 0.00013 35.9 9.3 86 59-163 2-94 (350)
74 2an1_A Putative kinase; struct 82.7 2 6.9E-05 37.5 6.0 84 61-165 6-97 (292)
75 3pzy_A MOG; ssgcid, seattle st 81.7 0.87 3E-05 36.9 2.9 71 56-132 3-79 (164)
76 3l6u_A ABC-type sugar transpor 81.5 10 0.00035 31.7 10.0 85 58-161 6-95 (293)
77 3m9w_A D-xylose-binding peripl 80.7 13 0.00046 31.5 10.5 83 60-161 2-89 (313)
78 3uug_A Multiple sugar-binding 80.1 12 0.00041 32.0 10.0 84 59-161 2-90 (330)
79 3l49_A ABC sugar (ribose) tran 79.1 13 0.00044 31.1 9.7 84 59-161 4-92 (291)
80 3tb6_A Arabinose metabolism tr 78.9 12 0.0004 31.4 9.4 87 60-162 15-106 (298)
81 1u0t_A Inorganic polyphosphate 78.5 5.4 0.00018 35.3 7.3 82 62-164 6-108 (307)
82 3rfq_A Pterin-4-alpha-carbinol 78.4 1.8 6.1E-05 36.0 3.8 71 56-132 26-102 (185)
83 1di6_A MOGA, molybdenum cofact 78.2 1.7 5.9E-05 36.3 3.7 69 59-132 2-79 (195)
84 3ksm_A ABC-type sugar transpor 78.1 13 0.00044 30.7 9.4 82 61-161 1-90 (276)
85 3cs3_A Sugar-binding transcrip 78.0 9.8 0.00034 31.8 8.6 81 59-162 7-87 (277)
86 3pfn_A NAD kinase; structural 77.6 2.6 8.8E-05 38.7 5.0 83 62-165 40-142 (365)
87 1y5e_A Molybdenum cofactor bio 77.4 7.4 0.00025 31.3 7.3 68 57-131 10-84 (169)
88 1sqs_A Conserved hypothetical 76.9 6 0.0002 33.3 6.9 76 62-146 4-105 (242)
89 3jy6_A Transcriptional regulat 76.6 16 0.00054 30.4 9.5 82 59-162 6-92 (276)
90 3hly_A Flavodoxin-like domain; 76.2 17 0.00057 28.5 9.0 79 81-162 12-91 (161)
91 3kbq_A Protein TA0487; structu 76.1 3.2 0.00011 34.0 4.8 101 60-174 3-108 (172)
92 3h5o_A Transcriptional regulat 75.5 24 0.00084 30.4 10.8 64 59-130 61-129 (339)
93 1mkz_A Molybdenum cofactor bio 75.2 11 0.00039 30.3 7.9 67 58-131 8-81 (172)
94 3iwt_A 178AA long hypothetical 75.1 2.2 7.5E-05 34.5 3.5 69 58-131 13-93 (178)
95 3k4h_A Putative transcriptiona 74.9 19 0.00064 30.0 9.6 86 59-160 7-97 (292)
96 3rot_A ABC sugar transporter, 74.5 16 0.00056 30.8 9.2 83 60-161 3-92 (297)
97 2fn9_A Ribose ABC transporter, 74.3 20 0.00069 29.9 9.7 63 59-129 1-68 (290)
98 2vzf_A NADH-dependent FMN redu 73.3 3.3 0.00011 33.8 4.2 91 62-163 5-110 (197)
99 1z0s_A Probable inorganic poly 73.2 5.5 0.00019 35.1 5.8 70 62-164 31-100 (278)
100 3o74_A Fructose transport syst 72.8 27 0.00091 28.7 9.9 61 61-129 3-68 (272)
101 3kke_A LACI family transcripti 72.5 14 0.00049 31.3 8.3 83 59-162 14-101 (303)
102 2a5l_A Trp repressor binding p 72.4 7.5 0.00026 31.1 6.2 46 81-126 17-78 (200)
103 3kjx_A Transcriptional regulat 72.0 24 0.00083 30.5 9.9 83 58-161 66-153 (344)
104 3fni_A Putative diflavin flavo 71.2 35 0.0012 26.7 10.6 78 81-161 16-95 (159)
105 3brq_A HTH-type transcriptiona 71.1 23 0.00079 29.4 9.2 63 59-129 18-87 (296)
106 2pjk_A 178AA long hypothetical 70.9 12 0.00039 30.5 7.0 71 57-132 12-94 (178)
107 2amj_A Modulator of drug activ 70.3 9.6 0.00033 31.4 6.4 84 60-148 13-98 (204)
108 3egc_A Putative ribose operon 70.2 18 0.00063 30.2 8.4 65 58-130 6-75 (291)
109 2dri_A D-ribose-binding protei 70.1 25 0.00087 29.1 9.3 83 60-161 1-88 (271)
110 2ioj_A Hypothetical protein AF 70.0 14 0.00047 28.4 7.0 70 89-171 43-114 (139)
111 3g1w_A Sugar ABC transporter; 69.5 30 0.001 29.0 9.7 83 60-161 4-92 (305)
112 3gv0_A Transcriptional regulat 69.0 20 0.00067 30.1 8.4 66 58-129 6-76 (288)
113 1uz5_A MOEA protein, 402AA lon 68.6 15 0.0005 34.0 7.9 75 57-131 177-258 (402)
114 3e3m_A Transcriptional regulat 68.5 19 0.00064 31.5 8.4 82 59-161 69-155 (355)
115 8abp_A L-arabinose-binding pro 68.3 24 0.00081 29.6 8.8 82 60-161 2-88 (306)
116 2fep_A Catabolite control prot 68.2 29 0.001 29.1 9.3 63 59-129 15-82 (289)
117 1g8l_A Molybdopterin biosynthe 67.4 13 0.00046 34.4 7.4 76 57-132 174-256 (411)
118 2rgy_A Transcriptional regulat 66.0 30 0.001 29.0 8.9 83 59-162 7-97 (290)
119 2r47_A Uncharacterized protein 65.6 1.6 5.4E-05 35.4 0.6 41 118-163 83-125 (157)
120 3huu_A Transcription regulator 65.3 21 0.00071 30.2 7.8 88 58-161 20-112 (305)
121 2o20_A Catabolite control prot 64.7 41 0.0014 28.8 9.8 63 59-129 62-129 (332)
122 3d8u_A PURR transcriptional re 64.6 18 0.00063 29.8 7.2 82 60-162 3-89 (275)
123 3dbi_A Sugar-binding transcrip 64.4 57 0.0019 27.9 10.6 66 58-129 59-129 (338)
124 3bbl_A Regulatory protein of L 64.3 40 0.0014 28.1 9.4 65 60-129 4-74 (287)
125 2rjo_A Twin-arginine transloca 64.3 34 0.0012 29.3 9.1 84 60-162 5-95 (332)
126 3e61_A Putative transcriptiona 64.0 19 0.00066 29.8 7.2 81 59-162 7-93 (277)
127 3c3k_A Alanine racemase; struc 63.8 40 0.0014 28.1 9.3 62 59-128 7-73 (285)
128 2pbq_A Molybdenum cofactor bio 63.3 4.2 0.00014 33.1 2.8 68 59-131 4-80 (178)
129 2fts_A Gephyrin; gephyrin, neu 63.1 12 0.00042 34.7 6.2 76 57-132 178-260 (419)
130 2x7x_A Sensor protein; transfe 63.0 31 0.0011 29.5 8.6 83 59-161 5-93 (325)
131 1jlj_A Gephyrin; globular alph 63.0 7.8 0.00027 31.9 4.4 71 56-131 10-90 (189)
132 4fe7_A Xylose operon regulator 62.7 19 0.00064 32.4 7.4 81 58-162 23-104 (412)
133 3k1y_A Oxidoreductase; structu 62.1 12 0.0004 30.7 5.4 97 57-164 9-127 (191)
134 2vk2_A YTFQ, ABC transporter p 61.8 56 0.0019 27.5 9.9 82 61-161 3-89 (306)
135 3rpe_A MDAB, modulator of drug 61.7 18 0.0006 30.5 6.5 87 59-150 25-113 (218)
136 2ioy_A Periplasmic sugar-bindi 61.4 51 0.0018 27.3 9.5 82 61-161 2-88 (283)
137 3ff4_A Uncharacterized protein 60.9 8.9 0.0003 29.3 4.1 23 140-167 95-117 (122)
138 2fvy_A D-galactose-binding per 60.9 42 0.0014 28.0 8.9 84 61-163 3-92 (309)
139 2iks_A DNA-binding transcripti 60.8 37 0.0013 28.3 8.5 63 59-129 19-86 (293)
140 4e5v_A Putative THUA-like prot 58.7 91 0.0031 27.0 14.0 74 84-165 19-96 (281)
141 1rtt_A Conserved hypothetical 58.4 9.2 0.00031 30.7 4.0 90 62-163 9-116 (193)
142 3o1i_D Periplasmic protein TOR 58.2 44 0.0015 27.8 8.6 83 59-161 4-93 (304)
143 3miz_A Putative transcriptiona 58.2 29 0.00098 29.2 7.4 64 58-128 11-79 (301)
144 2g2c_A Putative molybdenum cof 57.3 4 0.00014 32.9 1.6 68 59-131 4-81 (167)
145 4dik_A Flavoprotein; TM0755, e 57.0 49 0.0017 30.4 9.2 79 81-160 277-359 (410)
146 2i2c_A Probable inorganic poly 56.8 16 0.00054 31.6 5.5 54 86-165 16-71 (272)
147 3bil_A Probable LACI-family tr 56.4 34 0.0012 29.7 7.7 62 60-129 66-132 (348)
148 2q62_A ARSH; alpha/beta, flavo 56.3 25 0.00084 30.0 6.6 94 61-163 36-144 (247)
149 3qk7_A Transcriptional regulat 56.1 59 0.002 27.1 9.1 68 59-130 5-76 (294)
150 1tjy_A Sugar transport protein 55.5 56 0.0019 27.8 8.9 84 60-162 3-92 (316)
151 2ark_A Flavodoxin; FMN, struct 55.5 15 0.00053 29.3 4.9 63 81-147 16-79 (188)
152 2h3h_A Sugar ABC transporter, 55.2 89 0.003 26.2 10.1 81 61-161 2-88 (313)
153 1dbq_A Purine repressor; trans 54.8 62 0.0021 26.7 8.9 63 59-129 6-73 (289)
154 2fz5_A Flavodoxin; alpha/beta 54.6 41 0.0014 24.7 7.0 42 81-126 11-53 (137)
155 3afo_A NADH kinase POS5; alpha 54.3 5.9 0.0002 36.6 2.4 33 62-103 43-77 (388)
156 3hcw_A Maltose operon transcri 54.0 35 0.0012 28.7 7.2 69 59-130 6-79 (295)
157 3clk_A Transcription regulator 53.9 30 0.001 28.9 6.7 63 59-129 7-75 (290)
158 2hsg_A Glucose-resistance amyl 53.8 42 0.0014 28.7 7.8 63 59-129 59-126 (332)
159 1gud_A ALBP, D-allose-binding 53.5 79 0.0027 26.3 9.4 82 61-161 2-90 (288)
160 2qv7_A Diacylglycerol kinase D 53.5 81 0.0028 27.6 9.8 88 61-165 25-116 (337)
161 2bon_A Lipid kinase; DAG kinas 53.3 58 0.002 28.6 8.8 87 61-165 30-120 (332)
162 1uuy_A CNX1, molybdopterin bio 52.0 15 0.00052 29.3 4.2 68 59-131 4-83 (167)
163 2zki_A 199AA long hypothetical 51.9 13 0.00044 29.7 3.9 43 82-125 16-76 (199)
164 3g85_A Transcriptional regulat 51.1 20 0.00067 29.9 5.1 64 58-128 9-77 (289)
165 1t0b_A THUA-like protein; treh 50.9 41 0.0014 28.7 7.1 82 88-175 35-119 (252)
166 1wu2_A MOEA protein, molybdopt 50.8 13 0.00043 34.4 4.0 42 90-131 216-262 (396)
167 3brs_A Periplasmic binding pro 50.7 35 0.0012 28.3 6.6 64 60-129 5-75 (289)
168 3lkv_A Uncharacterized conserv 50.6 93 0.0032 26.5 9.5 69 85-162 156-227 (302)
169 3d02_A Putative LACI-type tran 49.3 99 0.0034 25.6 9.3 84 60-162 4-93 (303)
170 4a3s_A 6-phosphofructokinase; 48.6 20 0.00068 32.1 4.8 42 122-170 5-46 (319)
171 1ydg_A Trp repressor binding p 48.4 31 0.0011 27.8 5.7 28 81-108 18-45 (211)
172 2r48_A Phosphotransferase syst 48.1 83 0.0028 23.4 7.8 59 61-132 4-70 (106)
173 2q9u_A A-type flavoprotein; fl 47.4 61 0.0021 28.9 8.1 79 81-162 268-348 (414)
174 1qpz_A PURA, protein (purine n 47.1 1.1E+02 0.0039 26.0 9.6 63 59-129 57-124 (340)
175 2r4q_A Phosphotransferase syst 46.9 78 0.0027 23.6 7.2 60 60-132 3-70 (106)
176 3k9c_A Transcriptional regulat 46.4 40 0.0014 28.2 6.4 63 59-130 11-77 (289)
177 2fzv_A Putative arsenical resi 46.1 41 0.0014 29.3 6.5 78 61-147 60-150 (279)
178 3r6w_A FMN-dependent NADH-azor 45.4 66 0.0022 26.0 7.3 39 61-106 3-43 (212)
179 3hs3_A Ribose operon repressor 45.3 54 0.0019 27.1 7.0 62 58-127 8-75 (277)
180 3f2v_A General stress protein 45.2 33 0.0011 28.1 5.4 76 61-147 3-85 (192)
181 3tem_A Ribosyldihydronicotinam 44.9 46 0.0016 27.8 6.4 38 62-107 4-41 (228)
182 2ohh_A Type A flavoprotein FPR 43.8 54 0.0018 29.0 7.1 80 81-163 268-351 (404)
183 1jx6_A LUXP protein; protein-l 43.7 1.5E+02 0.0051 25.1 11.6 63 58-128 41-113 (342)
184 2gk3_A Putative cytoplasmic pr 42.2 51 0.0017 28.0 6.3 67 89-161 44-124 (256)
185 1eiw_A Hypothetical protein MT 41.4 19 0.00065 27.2 3.0 56 87-161 17-73 (111)
186 1pfk_A Phosphofructokinase; tr 41.1 34 0.0012 30.6 5.2 41 122-169 6-46 (320)
187 3ezx_A MMCP 1, monomethylamine 40.9 1.1E+02 0.0036 25.4 8.0 104 58-175 90-198 (215)
188 3gbv_A Putative LACI-family tr 40.1 1.1E+02 0.0037 25.2 8.1 85 59-162 7-101 (304)
189 2qh8_A Uncharacterized protein 39.4 1.7E+02 0.0058 24.5 9.4 66 87-161 158-226 (302)
190 1t5b_A Acyl carrier protein ph 39.2 78 0.0027 24.8 6.7 39 62-107 4-44 (201)
191 1byk_A Protein (trehalose oper 39.1 81 0.0028 25.5 7.0 61 61-129 3-68 (255)
192 1zxx_A 6-phosphofructokinase; 38.9 35 0.0012 30.5 4.9 42 122-170 5-46 (319)
193 2yxb_A Coenzyme B12-dependent 38.7 1.4E+02 0.0048 23.3 8.5 79 59-150 17-97 (161)
194 3fvw_A Putative NAD(P)H-depend 37.3 55 0.0019 26.3 5.5 78 60-147 3-94 (192)
195 1t0i_A YLR011WP; FMN binding p 36.8 32 0.0011 27.2 4.0 92 62-165 3-126 (191)
196 2is8_A Molybdopterin biosynthe 35.9 37 0.0013 26.9 4.1 42 91-132 27-75 (164)
197 3s40_A Diacylglycerol kinase; 34.9 2.2E+02 0.0074 24.4 9.6 93 62-173 10-108 (304)
198 1ehs_A STB, heat-stable entero 34.8 9.8 0.00034 23.6 0.4 15 158-172 32-46 (48)
199 4gi5_A Quinone reductase; prot 33.8 87 0.003 27.2 6.6 37 62-106 25-61 (280)
200 1d4a_A DT-diaphorase, quinone 33.5 1.2E+02 0.004 25.8 7.3 39 61-107 4-42 (273)
201 2hpv_A FMN-dependent NADH-azor 32.6 90 0.0031 24.9 6.1 41 61-107 3-45 (208)
202 3mw8_A Uroporphyrinogen-III sy 29.8 76 0.0026 26.1 5.3 42 89-130 15-61 (240)
203 2bwn_A 5-aminolevulinate synth 29.8 1.1E+02 0.0036 26.7 6.6 60 89-150 144-208 (401)
204 3b6i_A Flavoprotein WRBA; flav 29.7 1.2E+02 0.0041 23.6 6.4 44 81-125 13-74 (198)
205 4hs4_A Chromate reductase; tri 29.5 43 0.0015 27.3 3.6 92 62-163 9-117 (199)
206 3f6r_A Flavodoxin; FMN binding 28.9 1.2E+02 0.004 22.7 5.9 42 81-126 13-56 (148)
207 3jvd_A Transcriptional regulat 28.5 1.3E+02 0.0046 25.6 6.9 61 59-128 63-128 (333)
208 3dzz_A Putative pyridoxal 5'-p 28.4 1.2E+02 0.004 26.1 6.6 62 89-150 121-193 (391)
209 3lcm_A SMU.1420, putative oxid 28.3 1E+02 0.0034 24.7 5.7 76 62-147 3-100 (196)
210 3s2y_A Chromate reductase; ura 33.4 13 0.00044 30.5 0.0 13 113-125 67-79 (199)
211 3dzv_A 4-methyl-5-(beta-hydrox 27.2 3E+02 0.01 23.6 10.8 79 57-159 14-92 (273)
212 1y81_A Conserved hypothetical 26.9 90 0.0031 23.8 4.9 18 89-106 32-49 (138)
213 2h0a_A TTHA0807, transcription 26.7 32 0.0011 28.3 2.4 44 86-129 17-65 (276)
214 2h4a_A YRAM (HI1655); perplasm 26.6 57 0.002 28.6 4.1 67 86-163 138-209 (325)
215 3lft_A Uncharacterized protein 26.5 2E+02 0.0069 23.8 7.6 67 87-162 151-220 (295)
216 1ccw_A Protein (glutamate muta 26.4 1.2E+02 0.0042 22.9 5.6 63 92-159 25-89 (137)
217 4es6_A Uroporphyrinogen-III sy 26.2 1.2E+02 0.0041 25.1 6.0 43 88-130 19-69 (254)
218 5nul_A Flavodoxin; electron tr 26.0 77 0.0026 23.4 4.3 42 81-126 10-52 (138)
219 3re1_A Uroporphyrinogen-III sy 25.8 1E+02 0.0035 25.9 5.6 43 88-130 27-77 (269)
220 4dq6_A Putative pyridoxal phos 25.3 1.4E+02 0.0049 25.5 6.5 61 90-150 127-197 (391)
221 2e7j_A SEP-tRNA:Cys-tRNA synth 25.3 1.2E+02 0.0042 25.7 6.0 60 90-150 106-177 (371)
222 2hna_A Protein MIOC, flavodoxi 25.3 1.5E+02 0.0051 22.1 6.0 40 81-125 13-52 (147)
223 3iwp_A Copper homeostasis prot 25.0 2.2E+02 0.0076 24.9 7.6 12 119-130 179-190 (287)
224 1y80_A Predicted cobalamin bin 24.6 2.5E+02 0.0085 22.5 7.6 64 92-159 110-175 (210)
225 1ycg_A Nitric oxide reductase; 24.1 1.6E+02 0.0055 25.8 6.7 46 81-126 263-309 (398)
226 2kyr_A Fructose-like phosphotr 24.0 1.6E+02 0.0053 22.1 5.6 60 59-131 5-72 (111)
227 2dr1_A PH1308 protein, 386AA l 24.0 2.1E+02 0.0071 24.3 7.3 60 90-150 110-176 (386)
228 3rht_A (gatase1)-like protein; 23.7 1.4E+02 0.0048 25.6 6.0 39 88-127 20-58 (259)
229 1jye_A Lactose operon represso 22.8 3.5E+02 0.012 22.9 9.3 61 60-128 61-127 (349)
230 3hno_A Pyrophosphate-dependent 22.7 94 0.0032 28.8 4.9 42 122-170 7-51 (419)
231 1v6s_A Phosphoglycerate kinase 22.7 1.2E+02 0.0043 27.8 5.6 42 109-150 198-254 (390)
232 1uc8_A LYSX, lysine biosynthes 22.5 3.1E+02 0.011 22.2 8.0 52 63-127 2-56 (280)
233 1v8a_A Hydroxyethylthiazole ki 22.5 3.5E+02 0.012 22.8 9.7 77 59-159 14-90 (265)
234 2qu7_A Putative transcriptiona 22.3 1.3E+02 0.0046 24.6 5.5 62 59-129 7-73 (288)
235 1e5d_A Rubredoxin\:oxygen oxid 22.1 3.9E+02 0.013 23.2 9.4 81 81-162 264-345 (402)
236 1jr2_A Uroporphyrinogen-III sy 22.0 86 0.003 26.6 4.3 42 89-130 39-87 (286)
237 1vpe_A Phosphoglycerate kinase 21.9 1.3E+02 0.0043 27.8 5.5 41 110-150 201-256 (398)
238 3f9t_A TDC, L-tyrosine decarbo 21.9 1.7E+02 0.006 24.8 6.4 60 90-150 136-201 (397)
239 2qh8_A Uncharacterized protein 21.7 2.1E+02 0.0072 23.8 6.8 61 59-128 7-78 (302)
240 1o4s_A Aspartate aminotransfer 21.6 2.6E+02 0.0089 24.1 7.6 61 90-150 138-207 (389)
241 3p0r_A Azoreductase; structura 21.5 2.1E+02 0.0072 23.1 6.5 42 59-106 4-47 (211)
242 3sho_A Transcriptional regulat 21.5 2.8E+02 0.0096 21.3 7.3 70 84-163 50-122 (187)
243 2hqb_A Transcriptional activat 21.4 3.3E+02 0.011 22.8 8.0 63 60-128 5-72 (296)
244 3ctl_A D-allulose-6-phosphate 21.1 3.6E+02 0.012 22.4 8.5 38 88-125 96-134 (231)
245 3o8o_A 6-phosphofructokinase s 20.8 93 0.0032 31.3 4.7 41 122-169 397-437 (787)
246 2qip_A Protein of unknown func 20.4 3E+02 0.01 21.3 7.0 64 88-163 64-141 (165)
247 3isl_A Purine catabolism prote 20.2 1.9E+02 0.0064 25.0 6.3 60 90-150 101-166 (416)
248 1d2f_A MALY protein; aminotran 20.0 3.6E+02 0.012 23.0 8.1 59 89-150 123-195 (390)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.97 E-value=1.1e-30 Score=239.26 Aligned_cols=213 Identities=31% Similarity=0.488 Sum_probs=148.7
Q ss_pred ccccCCCCCCCCCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEE
Q 024713 44 SVLVPRCPVPDSKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGV 123 (263)
Q Consensus 44 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGl 123 (263)
++.--+|-.+.+..+.||+|||++....... . .....+|+.++|+++|+++|+++++++++.+.+.++..++.+|||
T Consensus 14 ~~~~~~~m~~~~~~~~~P~IGI~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dgl 90 (315)
T 1l9x_A 14 LVPRGSHMRPHGDTAKKPIIGILMQKCRNKV--M-KNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGI 90 (315)
T ss_dssp --------------CCCCEEEEECEECCSHH--H-HTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEE
T ss_pred cccCccccCCCcccCCCCEEEEECCcccccc--c-ccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEE
Confidence 3344567777778888999999997653210 0 012357888999999999999999999877667777767889999
Q ss_pred EECCCC-CCChhhHHH-HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCC
Q 024713 124 LYTGGW-AKDGLYYAI-VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEG 201 (263)
Q Consensus 124 ilpGG~-~~~~~~~~~-~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s 201 (263)
|||||+ ++++..+.. ...+++.+++..++|+.+||||||+|||+|+.++||++. +..+...+...|++.+.... .+
T Consensus 91 il~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~-~~~~~~~g~~~p~~~~~~~~-~s 168 (315)
T 1l9x_A 91 LFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECL-LTATDTVDVAMPLNFTGGQL-HS 168 (315)
T ss_dssp EECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCC-CEEEEEEEEEECCEECSTTT-TC
T ss_pred EEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccc-cccccccCCCCCeeeccCCC-CC
Confidence 999997 566654433 346777777763334349999999999999999999842 33333233345665543333 78
Q ss_pred cccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 202 TVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 202 ~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
+||+.+|+++...++++..++++|+|+|.++.+.++..|+++|+++|++.| +..++|+++
T Consensus 169 ~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~d-g~ve~i~~i 228 (315)
T 1l9x_A 169 RMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD-GKIEFISTM 228 (315)
T ss_dssp STTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEES-SSCEEEEEE
T ss_pred hHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCCEEEEEcCC-CCEEEEEEe
Confidence 999999998877777777888999999988777665578899999999965 457888664
No 2
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.93 E-value=2.1e-25 Score=198.14 Aligned_cols=168 Identities=23% Similarity=0.365 Sum_probs=113.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
.+||+|||++.......+ ...+...+|+..+|+++|+++|+.++++|+..+.+ +++.++.+||||||||++++|..|+
T Consensus 2 ~~~p~IGi~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg 79 (254)
T 3fij_A 2 SLKPVIGITGNRLVKGVD-VFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYL 79 (254)
T ss_dssp -CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGT
T ss_pred CCCCEEEEeCCccccccc-ccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcC
Confidence 378999999986433211 12235678999999999999999999999877655 7777889999999999987665542
Q ss_pred H----------------HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccc-cccc-----------cCCCcce
Q 024713 138 I----------------VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNI-LESF-----------NAADQAS 189 (263)
Q Consensus 138 ~----------------~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~-l~~~-----------~~~~~~~ 189 (263)
. ...+++++++.+ +||||||+|||+|+.++||++.. +... ..+.++.
T Consensus 80 ~~~~~~~~~~~~~rd~~~~~lir~a~~~~-----~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~ 154 (254)
T 3fij_A 80 EEPSQEIGAYFPPRDSYEIALVRAALDAG-----KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSH 154 (254)
T ss_dssp CCCCTTCCCCCHHHHHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCE
T ss_pred CccCcccCCcChhhhHHHHHHHHHHHHcC-----CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceE
Confidence 1 237889999888 99999999999999999997421 1100 0122344
Q ss_pred eeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 190 TLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 190 pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
++.++ . .+.||+.++.. ..+..+|++.| ..|+++++++|++.|
T Consensus 155 ~v~~~---~-~s~l~~~~~~~--------~~v~~~H~~~v--------~~l~~g~~v~a~s~d 197 (254)
T 3fij_A 155 TIDIE---P-TSELAKHHPNK--------KLVNSLHHQFI--------KKLAPSFKVTARTAD 197 (254)
T ss_dssp EEEEC---T-TSSGGGTCCTT--------EEECCBCSCEE--------SSCCSSEEEEEEETT
T ss_pred EEEeC---C-CChHHHhcCCc--------EEEEEeccchh--------hccCCCcEEEEEeCC
Confidence 45443 2 56788776542 24566898887 358899999999954
No 3
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=160.23 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=102.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV 139 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~ 139 (263)
.+.|+|+-.- .+|+ .+++++|+++|+++++++++.+.+++.. ..+||||||||++. .+....
T Consensus 24 ~~~I~iiD~g-------------~~~~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~--~~~~~~ 85 (218)
T 2vpi_A 24 EGAVVILDAG-------------AQYG-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS--VYAEDA 85 (218)
T ss_dssp TTCEEEEECS-------------TTTT-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC-----------C
T ss_pred CCeEEEEECC-------------CchH-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcc--cccccc
Confidence 4678888533 2344 3678899999999999998876665543 46999999999862 111111
Q ss_pred HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCc
Q 024713 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDC 219 (263)
Q Consensus 140 ~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~ 219 (263)
..+.+.+++.+ +||||||+|||+|+.++||++.... ..+.++.++.++ . .++||++++++ .
T Consensus 86 ~~~~~~~~~~~-----~PilGIC~G~Qll~~~~GG~v~~~~--~~~~G~~~v~~~---~-~~~l~~~l~~~--------~ 146 (218)
T 2vpi_A 86 PWFDPAIFTIG-----KPVLGICYGMQMMNKVFGGTVHKKS--VREDGVFNISVD---N-TCSLFRGLQKE--------E 146 (218)
T ss_dssp CCCCGGGGTSS-----CCEEEETHHHHHHHHHTTCCEEEEE--ECSCEEEEEEEC---T-TSGGGTTCCSE--------E
T ss_pred hhHHHHHHHcC-----CCEEEEcHHHHHHHHHhCCceEeCC--CCcccEEEEEEc---c-CChhHhcCCCC--------c
Confidence 12233334555 9999999999999999999843221 134455566553 2 57888887643 3
Q ss_pred eeEEEecceecCCCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 220 LVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 220 ~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
.++++|+|+| ..++++++++|++ | + +|++|
T Consensus 147 ~v~~~H~~~v--------~~l~~~~~vlA~s-~--~--~i~ai 176 (218)
T 2vpi_A 147 VVLLTHGDSV--------DKVADGFKVVARS-G--N--IVAGI 176 (218)
T ss_dssp EEEECSEEEE--------SSCCTTCEEEEEE-T--T--EEEEE
T ss_pred EEeehhhhHh--------hhcCCCCEEEEEc-C--C--eEEEE
Confidence 6789999998 3578899999998 4 3 55554
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.79 E-value=1.3e-19 Score=156.69 Aligned_cols=136 Identities=17% Similarity=0.276 Sum_probs=95.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCC-CCCChhhHH-HHHHHHHHHHHhCCCCCcceEEe
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGG-WAKDGLYYA-IVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG-~~~~~~~~~-~~~~li~~a~~~~d~g~~~PILG 160 (263)
++|. .+|+++|+++|+++++++++.+.++ ++.+|||||||| +.. + +.. ....+.+++++.+ +|+||
T Consensus 23 ~~~~-~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~p~~-~-~~~~~~~~l~~~~~~~~-----~PiLG 90 (212)
T 2a9v_A 23 GQWT-HREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNI-D-EELDKLGSVGKYIDDHN-----YPILG 90 (212)
T ss_dssp CCTT-CHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCG-G-GTGGGHHHHHHHHHHCC-----SCEEE
T ss_pred CccH-HHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCCCCC-C-cccccchhHHHHHHhCC-----CCEEE
Confidence 4554 3688999999999999998654443 456999999999 541 1 111 1234556666777 99999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccC
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L 240 (263)
||+|||+|+.++||++.... ..+.++.++.++ . .++||+++++. ..+|++|++++ ..+
T Consensus 91 IC~G~Qll~~~lGg~v~~~~--~~~~G~~~v~~~---~-~~~l~~~~~~~--------~~v~~~H~~~v--------~~l 148 (212)
T 2a9v_A 91 ICVGAQFIALHFGASVVKAK--HPEFGKTKVSVM---H-SENIFGGLPSE--------ITVWENHNDEI--------INL 148 (212)
T ss_dssp ETHHHHHHHHHTTCEEEEEE--EEEEEEEEEEES---C-CCGGGTTCCSE--------EEEEEEEEEEE--------ESC
T ss_pred EChHHHHHHHHhCCEEEcCC--CcccCceeeEEC---C-CChhHhcCCCc--------eEEEeEhhhhH--------hhC
Confidence 99999999999999843211 122334444443 2 56788877643 35799999997 357
Q ss_pred CCCcEEEEEEcc
Q 024713 241 SRFFKMLTTSAD 252 (263)
Q Consensus 241 ~~~f~v~Ats~D 252 (263)
+++++++|++.|
T Consensus 149 ~~~~~vlA~s~d 160 (212)
T 2a9v_A 149 PDDFTLAASSAT 160 (212)
T ss_dssp CTTEEEEEECSS
T ss_pred CCCcEEEEEeCC
Confidence 888999999954
No 5
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.78 E-value=1.8e-18 Score=147.27 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCC-Chhh-HHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 88 ASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAK-DGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~-~~~~-~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
.+++++|+++|+++++++++. +.+++.. ..+|||||+||+.. .... .....++++++ +.+ +|+||||+|
T Consensus 15 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~-----~PvLGIC~G 86 (195)
T 1qdl_B 15 YNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKR-----TPILGVCLG 86 (195)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTT-----SCEEEETHH
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCC-----CcEEEEehH
Confidence 368899999999999998763 3333322 15899999999763 2111 11123667764 556 999999999
Q ss_pred hHHHHHHHcCcccccccccCCCcceeeEEeecCCCCC--cccccCChhhhhhcCCCceeEEEecceecCCCccccccCCC
Q 024713 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEG--TVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (263)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s--~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~ 242 (263)
||+|+.++||++.... ...++.+.++.++. .+ ++|+++++. ..++++|+|+|. .+++
T Consensus 87 ~QlL~~~~gg~v~~~~-~~~~g~~~~v~~~~----~~~~~l~~~~~~~--------~~v~~~H~~~v~--------~l~~ 145 (195)
T 1qdl_B 87 HQAIGYAFGAKIRRAR-KVFHGKISNIILVN----NSPLSLYYGIAKE--------FKATRYHSLVVD--------EVHR 145 (195)
T ss_dssp HHHHHHHTTCEEEEEE-EEEEEEEEEEEECC----SSCCSTTTTCCSE--------EEEEEEEEEEEE--------CCCT
T ss_pred HHHHHHHhCCEEeccC-CCcCCCceEEEECC----CCHhHHHhcCCCc--------eEEeccccchhh--------hCCC
Confidence 9999999999843211 11233344444431 44 788877643 368999999983 5788
Q ss_pred CcEEEEEEc
Q 024713 243 FFKMLTTSA 251 (263)
Q Consensus 243 ~f~v~Ats~ 251 (263)
+++++|++.
T Consensus 146 ~~~vla~s~ 154 (195)
T 1qdl_B 146 PLIVDAISA 154 (195)
T ss_dssp TEEEEEEES
T ss_pred CcEEEEEEC
Confidence 999999993
No 6
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.78 E-value=5.6e-18 Score=143.84 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhccc--CCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLEL--VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~--~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
|| ..+++++|+++|+++++++++.+.+++.+.+.. .+++|++||+.. +.......+++++ ++.+ +|||||
T Consensus 11 s~-~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~-~~~~~~~~~l~~~-~~~~-----~PilGI 82 (192)
T 1i1q_B 11 SF-TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGV-PSEAGCMPELLTR-LRGK-----LPIIGI 82 (192)
T ss_dssp SS-HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSC-GGGSTTHHHHHHH-HBTT-----BCEEEE
T ss_pred cH-HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcC-chhCchHHHHHHH-HhcC-----CCEEEE
Confidence 44 357899999999999999987665555443332 346899998873 2111223456664 4566 999999
Q ss_pred cchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC
Q 024713 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (263)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~ 241 (263)
|+|||+|+.++||++.... ....+...... . . .+++|+++++ ...+|++|+|.+ ..++
T Consensus 83 C~G~Qll~~~~Gg~v~~~~--~~~~g~~~~~~--~-~-~~~l~~~~~~--------~~~v~~~H~~~v--------~~lp 140 (192)
T 1i1q_B 83 CLGHQAIVEAYGGYVGQAG--EILHGKATSIE--H-D-GQAMFAGLAN--------PLPVARYHSLVG--------SNVP 140 (192)
T ss_dssp THHHHHHHHHTSCCCCC-----CCSSEEEEEE--E-C-CCGGGTTSCS--------SEEEEECCC-----------CCCC
T ss_pred CcChHHHHHHhCCEEEeCC--CcEecceeEEe--c-C-CChHHhcCCC--------CcEEEechhhHh--------hhCC
Confidence 9999999999999743221 11222222211 1 2 4678887664 346899999987 3578
Q ss_pred CCcEEEEEE
Q 024713 242 RFFKMLTTS 250 (263)
Q Consensus 242 ~~f~v~Ats 250 (263)
++++++|++
T Consensus 141 ~~~~v~a~~ 149 (192)
T 1i1q_B 141 AGLTINAHF 149 (192)
T ss_dssp TTCEEEEEE
T ss_pred CccEEEECC
Confidence 889999854
No 7
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.77 E-value=2e-18 Score=145.97 Aligned_cols=134 Identities=20% Similarity=0.286 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
.+++++|+++|+++++++.+.+.+++.. ..+||||||||++ +.......++++++.+.+ +|+||||+|||+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~~--~~~~~~~~~~i~~~~~~~-----~PilGIC~G~Q~ 84 (189)
T 1wl8_A 14 HRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGPS--LENTGNCEKVLEHYDEFN-----VPILGICLGHQL 84 (189)
T ss_dssp HHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCSC--TTCCTTHHHHHHTGGGTC-----SCEEEETHHHHH
T ss_pred HHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCCC--hhhhhhHHHHHHHHhhCC-----CeEEEEcHHHHH
Confidence 4788999999999999998765444332 3599999999983 332222346666655666 999999999999
Q ss_pred HHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEE
Q 024713 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (263)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~ 247 (263)
|+.++||++.... . .+.++.++.++ . .+++|++++++ ..+|++|++.+ ..++++++++
T Consensus 85 l~~~~gg~v~~~~-~-~~~G~~~~~~~---~-~~~l~~~~~~~--------~~~~~~h~~~v--------~~l~~~~~vl 142 (189)
T 1wl8_A 85 IAKFFGGKVGRGE-K-AEYSLVEIEII---D-EXEIFKGLPKR--------LKVWESHMDEV--------KELPPKFKIL 142 (189)
T ss_dssp HHHHHTCEEEECS-C-CSCEEEEEEES---C-C--CCTTSCSE--------EEEEECCSEEE--------EECCTTEEEE
T ss_pred HHHHhCCceecCC-C-cccCceeEEEe---c-CchHHhCCCCc--------eEEEEEeeeeh--------hhCCCCcEEE
Confidence 9999999843211 1 23333333332 2 56788876643 24566666654 3578899999
Q ss_pred EEEcc
Q 024713 248 TTSAD 252 (263)
Q Consensus 248 Ats~D 252 (263)
|++.|
T Consensus 143 a~s~~ 147 (189)
T 1wl8_A 143 ARSET 147 (189)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 99954
No 8
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.76 E-value=7.5e-19 Score=170.88 Aligned_cols=157 Identities=11% Similarity=0.161 Sum_probs=107.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~ 138 (263)
.++.|+|+-.. .+|. .+++++|+++|+.+++++++.+.+++... .+||||||||++. . +...
T Consensus 6 ~~~~IlIlD~g-------------~~~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s-~-~~~~ 67 (525)
T 1gpm_A 6 HKHRILILDFG-------------SQYT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPES-T-TEEN 67 (525)
T ss_dssp TSSEEEEEECS-------------CTTH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSC-T-TSTT
T ss_pred CCCEEEEEECC-------------CccH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCcc-c-cccC
Confidence 34678888522 3454 56889999999999999998777776553 5799999999862 1 1100
Q ss_pred HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCC
Q 024713 139 VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTD 218 (263)
Q Consensus 139 ~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~ 218 (263)
...+.+.+++.+ +||||||+|||+|+.++||++.... ..+.++..+.++ . .++||+++++.........
T Consensus 68 ~~~~~~~~~~~g-----~PvLGIC~G~Qlla~~~GG~V~~~~--~~e~G~~~v~~~---~-~~~L~~~l~~~~~~~~~~~ 136 (525)
T 1gpm_A 68 SPRAPQYVFEAG-----VPVFGVCYGMQTMAMQLGGHVEASN--EREFGYAQVEVV---N-DSALVRGIEDALTADGKPL 136 (525)
T ss_dssp CCCCCGGGGTSS-----SCEEEETHHHHHHHHHHTCEEECCS--SCEEEEEEEEEC---S-CCTTTTTCCSEECTTSCEE
T ss_pred CcchHHHHHHCC-----CCEEEEChHHHHHHHHcCCEEEeCC--CcccceEEEEeC---C-CCHhhccCccccccccccc
Confidence 011223344556 9999999999999999999853221 233444555443 2 5689998876322222224
Q ss_pred ceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 219 CLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 219 ~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
..++++|++.| ..|+++|+++|++.|
T Consensus 137 ~~v~~~H~~~V--------~~lp~g~~v~A~s~~ 162 (525)
T 1gpm_A 137 LDVWMSHGDKV--------TAIPSDFITVASTES 162 (525)
T ss_dssp EEEEEEECSEE--------EECCTTCEEEEECSS
T ss_pred eEEEEEcccee--------eeCCCCCEEEEECCC
Confidence 56899999987 358899999999944
No 9
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.76 E-value=3.4e-18 Score=150.48 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--Ch---hhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG---LYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~---~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
++.+++++.|+.+++++++. .+.+++.++.+||||||||+.. +. .+.....++++++++.+ +||||||+
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~-----~PiLGIC~ 101 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKE-----IPFLGICL 101 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHT-----CCEEEETH
T ss_pred HHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCC-----CCEEEEch
Confidence 45678999999988777643 1223334678999999999841 11 22233458889988888 99999999
Q ss_pred hhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCC
Q 024713 164 GFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRF 243 (263)
Q Consensus 164 G~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~ 243 (263)
|||+|+.++||++... ....+.++.++... . .++||+++++. ..+|++|++.+ .++++
T Consensus 102 G~QlL~~alGG~v~~~-~~g~~~G~~~v~~~---~-~~~l~~~~~~~--------~~~~~~H~~~v---------~lp~~ 159 (239)
T 1o1y_A 102 GSQMLAKVLGASVYRG-KNGEEIGWYFVEKV---S-DNKFFREFPDR--------LRVFQWHGDTF---------DLPRR 159 (239)
T ss_dssp HHHHHHHHTTCCEEEC-TTCCEEEEEEEEEC---C-CCGGGTTSCSE--------EEEEEEESEEE---------CCCTT
T ss_pred hHHHHHHHcCCeEecC-CCCCccccEEEEEC---C-CCchHHhCCCC--------ceeEeecCCcc---------ccCCC
Confidence 9999999999984311 11123334444421 2 57888877643 46889999986 36788
Q ss_pred cEEEEEEcc
Q 024713 244 FKMLTTSAD 252 (263)
Q Consensus 244 f~v~Ats~D 252 (263)
++++|++.|
T Consensus 160 ~~vlA~s~~ 168 (239)
T 1o1y_A 160 ATRVFTSEK 168 (239)
T ss_dssp CEEEEECSS
T ss_pred CEEEEEcCC
Confidence 999999854
No 10
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.75 E-value=3.9e-18 Score=153.02 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=104.2
Q ss_pred cEEEEeCCCC-CCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-h-h----HHHhcccCCEEEECCCCCCCh
Q 024713 61 PVIGIVTHPG-DGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-D-V----LFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 61 PvIGI~~~~~-~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-~-~----l~~~l~~~dGlilpGG~~~~~ 133 (263)
+.|+|++..+ . ..+..+|+.. ++.++..+.|+++.+++.+... + . +.+.++.+||||||||+.. +
T Consensus 9 ~~Iaivg~y~~~------~~dny~S~~~-aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQD------AGDTYFSVLQ-CFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-R 80 (273)
T ss_dssp EEEEEEECCHHH------HTTTTHHHHH-HHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-T
T ss_pred CEEEEEeCCCcC------CchHHHHHHH-HHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-c
Confidence 8899996441 0 0123445443 4556666677788887765321 0 0 3344678999999999763 2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccccc-CC---Cccee-----------------eE
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFN-AA---DQAST-----------------LQ 192 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~-~~---~~~~p-----------------l~ 192 (263)
.. .....+++++++.+ +||||||+|||+|+.++||++..+.... .+ +...+ +.
T Consensus 81 ~~-~~~~~~i~~~~~~~-----~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g 154 (273)
T 2w7t_A 81 GV-DGKCAAAQVARMNN-----IPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLG 154 (273)
T ss_dssp TH-HHHHHHHHHHHHHT-----CCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEE
T ss_pred Cc-hhHHHHHHHHHHCC-----CcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCccccc
Confidence 22 22347888888888 9999999999999999999853221111 00 00011 11
Q ss_pred Eee-cC-CCCCcccccCChhhhhhcCCCceeE--EEecceecCCCccccccC-CCCcEEEEEEccCCCC-EEEEEe
Q 024713 193 FME-NT-SIEGTVFQRFPPKLIKKLSTDCLVM--QNHHYGISPETLRKNLDL-SRFFKMLTTSADEDNK-CKPMTI 262 (263)
Q Consensus 193 ~~~-~~-~~~s~Lf~~lp~~~~~~l~~~~~~~--~~Hs~~V~p~~~~~~~~L-~~~f~v~Ats~D~~g~-~fvs~v 262 (263)
|.. .. ...+++++. +.+...++ ++|+|++.++.. +.| +++++++|++.|.+|. .+|.+|
T Consensus 155 ~~~v~~~~~~s~l~~~--------~~~~~~v~~~H~Hsy~v~~~~v---~~l~~~g~~v~A~s~d~~~~g~~ieai 219 (273)
T 2w7t_A 155 ACDVYIVEKSSIMAKI--------YSKSNIVVERHRHRYEVNTAYF---EDLRKAGLCISAVTDPTFSSRCRVEAV 219 (273)
T ss_dssp EEEEEECCTTSHHHHH--------TTTCSEEEEEEEECCEECGGGH---HHHHHTTCEEEEESCTTCCTTCCEEEE
T ss_pred ceEEEEecCCcHHHHH--------hCCCceEEeecccccccCHHHH---HhhccCCcEEEEEcCCcCCCCCeEEEE
Confidence 111 00 002334333 23333444 468899977543 357 6889999999663332 466654
No 11
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.74 E-value=1.2e-18 Score=169.45 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=102.6
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV 139 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~ 139 (263)
+..|+|+-. +.+|. .++.++|+++|+.+++++++.+.+++... ++||||||||+.. .+....
T Consensus 10 ~~~I~IlD~-------------g~~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~s--v~~~~~ 71 (527)
T 3tqi_A 10 QHRILILDF-------------GSQYA-QLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPET--VTLSHT 71 (527)
T ss_dssp CSEEEEEEC-------------SCTTH-HHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC---------
T ss_pred CCeEEEEEC-------------CCccH-HHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCcc--cccCCC
Confidence 356888742 23555 46889999999999999988766654321 5699999999872 111111
Q ss_pred HHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCc
Q 024713 140 EKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDC 219 (263)
Q Consensus 140 ~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~ 219 (263)
..+.+.+++.+ +||||||+|||+|+.++||++... ...+.++..+.++. .++||+++++.+........
T Consensus 72 ~~~~~~~~~~~-----~PvLGIC~G~Qlla~~lGG~V~~~--~~~e~G~~~v~~~~----~~~l~~~l~~~~~~~~~~~~ 140 (527)
T 3tqi_A 72 LRAPAFIFEIG-----CPVLGICYGMQTMAYQLGGKVNRT--AKAEFGHAQLRVLN----PAFLFDGIEDQVSPQGEPLL 140 (527)
T ss_dssp --CCCSTTTSS-----SCEEEETHHHHHHHHHSSSCBC-------CEEEEEEEESS----CTTTTSSCCSBCCTTSCCEE
T ss_pred hhhHHHHHhcC-----CCEEEEChHHHHHHHHcCCeEEeC--CCccccceEEEEcC----CChhhcCCccccccccccce
Confidence 23334445566 999999999999999999985321 12344555555432 56799988763211111134
Q ss_pred eeEEEecceecCCCccccccCCCCcEEEEEEc
Q 024713 220 LVMQNHHYGISPETLRKNLDLSRFFKMLTTSA 251 (263)
Q Consensus 220 ~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~ 251 (263)
.+|++|++.| ..|+++|+++|++.
T Consensus 141 ~v~~~H~d~v--------~~lp~g~~v~A~s~ 164 (527)
T 3tqi_A 141 DVWMSHGDIV--------SELPPGFEATACTD 164 (527)
T ss_dssp EEEEESSSCB--------CSCCTTCEEEEEET
T ss_pred EEEEEcccch--------hccCCCCEEEEEeC
Confidence 6899999987 45899999999994
No 12
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.74 E-value=7.8e-18 Score=149.45 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--C-hhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--D-GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~-~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
.++.+++++.|.++.++.+.... .+...++.+||||||||+.. + ..+.....++++.+++.+ +||||||+|
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~~-~~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~-----~PvlGIC~G 91 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRSD-PLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQR-----VPVIGHCLG 91 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGTC-CCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHT-----CCEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCC-cCcCccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcC-----CCEEEECHH
Confidence 35677899999999888754321 11223668999999999962 1 234444558899888888 999999999
Q ss_pred hHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCc
Q 024713 165 FELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFF 244 (263)
Q Consensus 165 ~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f 244 (263)
||+|+.++||++... ...+.++.++.++.... .+++| ++|+. ..+|++|++.+ .|++++
T Consensus 92 ~Qll~~~lGG~V~~~--~~~e~G~~~v~~~~~~~-~~~l~-g~~~~--------~~v~~~H~~~v---------~lp~~~ 150 (250)
T 3m3p_A 92 GQLLAKAMGGEVTDS--PHAEIGWVRAWPQHVPQ-ALEWL-GTWDE--------LELFEWHYQTF---------SIPPGA 150 (250)
T ss_dssp HHHHHHHTTCCEEEE--EEEEEEEEEEEECSSHH-HHHHH-SCSSC--------EEEEEEEEEEE---------CCCTTE
T ss_pred HHHHHHHhCCEEEeC--CCCceeeEEEEEecCCC-Ccccc-cCCCc--------cEEEEEcccee---------ecCCCC
Confidence 999999999985321 11344455555542111 24577 56543 46899999986 377889
Q ss_pred EEEEEEcc
Q 024713 245 KMLTTSAD 252 (263)
Q Consensus 245 ~v~Ats~D 252 (263)
+++|++.|
T Consensus 151 ~vlA~s~~ 158 (250)
T 3m3p_A 151 VHILRSEH 158 (250)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 99999943
No 13
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.73 E-value=8.8e-18 Score=144.13 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH-HHHHHHHHHhCCCCCcceEEecc
Q 024713 84 SYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV-EKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 84 s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~-~~li~~a~~~~d~g~~~PILGIC 162 (263)
.++ .|+.++|+++|++++++. ++++ ++.+||||||||++....+.... ..+++.+.+.+ +||||||
T Consensus 13 ~n~-~si~~al~~~G~~~~v~~---~~~~----l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~-----~PvlGIC 79 (211)
T 4gud_A 13 ANI-SSVKFAIERLGYAVTISR---DPQV----VLAADKLFLPGVGTASEAMKNLTERDLIELVKRVE-----KPLLGIC 79 (211)
T ss_dssp TTH-HHHHHHHHHTTCCEEEEC---CHHH----HHHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCC-----SCEEEET
T ss_pred ChH-HHHHHHHHHCCCEEEEEC---CHHH----HhCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcC-----CCEEEEc
Confidence 344 478899999999998763 4454 45689999999876322222211 25677777888 9999999
Q ss_pred chhHHHHHHHcCccccc-------cccc-------CCCccee-eEEee-cCCCCCcccccCChhhhhhcCCCceeEEEec
Q 024713 163 LGFELLTMIISKDKNIL-------ESFN-------AADQAST-LQFME-NTSIEGTVFQRFPPKLIKKLSTDCLVMQNHH 226 (263)
Q Consensus 163 lG~QlL~~~~GG~~~~l-------~~~~-------~~~~~~p-l~~~~-~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs 226 (263)
+|||+|+.++||..... ...+ ......+ ..+.. .....+++|+++++ ...+|++|+
T Consensus 80 lG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~~~H~ 151 (211)
T 4gud_A 80 LGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEP--------DAYFYFVHS 151 (211)
T ss_dssp HHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCT--------TCCEEEEES
T ss_pred hhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCC--------CcEEEEEee
Confidence 99999999988763211 1111 0000111 11211 01114567776654 456899999
Q ss_pred ceecCCCccccccCCCCcEEEEEEccCCCCEEEEEe
Q 024713 227 YGISPETLRKNLDLSRFFKMLTTSADEDNKCKPMTI 262 (263)
Q Consensus 227 ~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~~fvs~v 262 (263)
+.+.+ .+.++|++. +|..|++++
T Consensus 152 ~~v~~-----------~~~~~a~~~--~g~~~~~~v 174 (211)
T 4gud_A 152 FAMPV-----------GDYTIAQCE--YGQPFSAAI 174 (211)
T ss_dssp EECCC-----------CTTEEEEEE--SSSEEEEEE
T ss_pred EEeCC-----------CCeEEEEec--CCCeEEEEE
Confidence 98743 235788883 588888764
No 14
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.72 E-value=8.5e-18 Score=164.49 Aligned_cols=144 Identities=16% Similarity=0.263 Sum_probs=98.2
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--ChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
.+|. .++.++|+++|+.+++++++.+.+.+.. .++||||||||+.. +.........+++.+.+.+ +||||
T Consensus 17 s~~~-~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g-----~PvLG 88 (556)
T 3uow_A 17 SQYF-HLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKK-----IPIFG 88 (556)
T ss_dssp CTTH-HHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTT-----CCEEE
T ss_pred CccH-HHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccCCcchhHHHHHHhhhcC-----CCEEE
Confidence 4554 3688899999999999998876665432 26899999999862 1111111246788887778 99999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCC---------------------------CCCcccccC-Chhhh
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTS---------------------------IEGTVFQRF-PPKLI 212 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~---------------------------~~s~Lf~~l-p~~~~ 212 (263)
||+|||+|+.++||++... ...+.+...+.++.... ..++||+++ |
T Consensus 89 IC~G~QlLa~~lGG~V~~~--~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~---- 162 (556)
T 3uow_A 89 ICYGMQEIAVQMNGEVKKS--KTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKS---- 162 (556)
T ss_dssp ETHHHHHHHHHTTCEEEEE--EEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCS----
T ss_pred ECHHHHHHHHHhCCcEecC--CCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhccccc----
Confidence 9999999999999984321 12233344454432210 022456555 3
Q ss_pred hhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEcc
Q 024713 213 KKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSAD 252 (263)
Q Consensus 213 ~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D 252 (263)
+...++++|++.| ..++++|+++|++.|
T Consensus 163 ----~~~~v~~~H~d~V--------~~lp~g~~vlA~s~~ 190 (556)
T 3uow_A 163 ----DITTVWMNHNDEV--------TKIPENFYLVSSSEN 190 (556)
T ss_dssp ----SEEEEEEEEEEEE--------EECCTTCEEEEEETT
T ss_pred ----CceEEEEEcccee--------eccCCCcEEEEEeCC
Confidence 3346899999987 458899999999943
No 15
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.72 E-value=2.2e-18 Score=166.82 Aligned_cols=138 Identities=14% Similarity=0.238 Sum_probs=96.0
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
+.+|. .+++++++++|+.+++++++.+.+++... .+||||||||++. .+......+.+.+++.+ +|||||
T Consensus 8 g~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s--~~~~~~~~~~~~~~~~~-----~PvLGI 77 (503)
T 2ywb_A 8 GSQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRS--VFDPDAPRPDPRLFSSG-----LPLLGI 77 (503)
T ss_dssp SCTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSC--SSCTTCCCCCGGGGCSS-----CCEEEE
T ss_pred CCcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCch--hccCCCcchHHHHHhCC-----CCEEEE
Confidence 35666 57889999999999999998777766542 5799999999862 11000011223344556 999999
Q ss_pred cchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCC
Q 024713 162 CLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLS 241 (263)
Q Consensus 162 ClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~ 241 (263)
|+|||+|+.++||++.... ..+.++..+.+. .++||+++++ ...++++|+++| ..++
T Consensus 78 C~G~Qlla~~~GG~v~~~~--~~e~G~~~v~~~-----~~~l~~~~~~--------~~~v~~~H~~~v--------~~lp 134 (503)
T 2ywb_A 78 CYGMQLLAQELGGRVERAG--RAEYGKALLTRH-----EGPLFRGLEG--------EVQVWMSHQDAV--------TAPP 134 (503)
T ss_dssp THHHHHHHHTTTCEEECC-----CEEEEECSEE-----CSGGGTTCCS--------CCEEEEECSCEE--------EECC
T ss_pred CHHHHHHHHHhCCeEeeCC--CCccceEEEEec-----CcHHhhcCCC--------ccEEEEECCCcc--------ccCC
Confidence 9999999999999853221 223444444432 2678887764 346889999998 3588
Q ss_pred CCcEEEEEEcc
Q 024713 242 RFFKMLTTSAD 252 (263)
Q Consensus 242 ~~f~v~Ats~D 252 (263)
++|+++|++.|
T Consensus 135 ~g~~v~A~s~~ 145 (503)
T 2ywb_A 135 PGWRVVAETEE 145 (503)
T ss_dssp TTCEEEEECSS
T ss_pred CCCEEEEEECC
Confidence 99999999844
No 16
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.72 E-value=1.9e-17 Score=145.09 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC-C-----hhhHH--HHHHHHHHHHHhCCCCCcceEEe
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-D-----GLYYA--IVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~-~-----~~~~~--~~~~li~~a~~~~d~g~~~PILG 160 (263)
.+.+++++.|..+.+++.... +.+.+.++.+||||++||+.. . ..|.. ...++++++++.+ +||||
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~-~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~PvLG 89 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSE-----KIIVG 89 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGT-CCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTT-----CEEEE
T ss_pred HHHHHHHHCCCeEEEEeeeCC-CCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcC-----CCEEE
Confidence 456789999999988876432 112223668999999999873 1 12222 2458889988888 99999
Q ss_pred ccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccC
Q 024713 161 HCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDL 240 (263)
Q Consensus 161 IClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L 240 (263)
||+|||+|+.++||++... ...+.++.++.++.... .+++|+++|+. ..+|++|++. ..+
T Consensus 90 IClG~QlL~~~~Gg~v~~~--~~~~~G~~~v~~~~~~~-~~~l~~~~~~~--------~~v~~~H~~~---------~~l 149 (236)
T 3l7n_A 90 VCLGAQLMGVAYGADYLHS--PKKEIGNYLISLTEAGK-MDSYLSDFSDD--------LLVGHWHGDM---------PGL 149 (236)
T ss_dssp ETHHHHHHHHHTTCCCEEE--EEEEEEEEEEEECTTGG-GCGGGTTSCSE--------EEEEEEEEEE---------CCC
T ss_pred EchHHHHHHHHhCCEEecC--CCceeeeEEEEEccCcc-cChHHhcCCCC--------cEEEEecCCc---------ccC
Confidence 9999999999999984321 11334456666654322 46788887754 3578899864 357
Q ss_pred CCCcEEEEEEcc
Q 024713 241 SRFFKMLTTSAD 252 (263)
Q Consensus 241 ~~~f~v~Ats~D 252 (263)
+++++++|++.|
T Consensus 150 p~~~~vla~s~~ 161 (236)
T 3l7n_A 150 PDKAQVLAISQG 161 (236)
T ss_dssp CTTCEEEEECSS
T ss_pred CChheEEEECCC
Confidence 889999999944
No 17
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.71 E-value=3.4e-17 Score=153.19 Aligned_cols=131 Identities=15% Similarity=0.296 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
.+++++|+++|++++++|++.+.+++.. ..+|||||+||+.. +.......++++++++++ +||||||+|||+
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgd-p~~~~~~~~~Ir~~~~~~-----~PILGIClG~QL 273 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGD-PAPCDYAITAIQKFLETD-----IPVFGICLGHQL 273 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBC-STTCHHHHHHHHHHTTSC-----CCEEEETHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCC-hHHHHHHHHHHHHHHHcC-----CCEEEECchHHH
Confidence 4688999999999999999877665542 36999999999873 322233447888888777 999999999999
Q ss_pred HHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEE
Q 024713 168 LTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKML 247 (263)
Q Consensus 168 L~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~ 247 (263)
|+.++||++..+ .+..++.++|+... . ..++ ..+.++|+|+|.++ .|+++++++
T Consensus 274 La~A~GG~v~k~-~~gh~g~n~pv~~~---~-~g~v---------------~its~~H~~aV~~~------~Lp~~~~v~ 327 (379)
T 1a9x_B 274 LALASGAKTVKM-KFGHHGGNHPVKDV---E-KNVV---------------MITAQNHGFAVDEA------TLPANLRVT 327 (379)
T ss_dssp HHHHTTCCEEEE-EEEEEEEEEEEEET---T-TTEE---------------EEEEEEEEEEECST------TCCTTEEEE
T ss_pred HHHHhCcEEEec-ccccccCceeeEec---C-CCcE---------------EEEecCccceEecc------cCCCCeEEE
Confidence 999999985422 23222333333210 1 1111 13456899999643 377889999
Q ss_pred EEEcc
Q 024713 248 TTSAD 252 (263)
Q Consensus 248 Ats~D 252 (263)
+++.+
T Consensus 328 a~s~~ 332 (379)
T 1a9x_B 328 HKSLF 332 (379)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99843
No 18
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.67 E-value=5.8e-17 Score=136.66 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH-
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA- 137 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~- 137 (263)
+||+|||+..++. ..+++++|+++|+++++++.. + .++.+||||||||....+....
T Consensus 1 ~~p~Igi~~~~~~---------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~~~~~~~~~ 58 (191)
T 2ywd_A 1 MRGVVGVLALQGD---------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGESTTIGKLAR 58 (191)
T ss_dssp --CCEEEECSSSC---------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCHHHHHHHHH
T ss_pred CCcEEEEEecCCc---------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCChhhhHHhhh
Confidence 4899999986531 246889999999999888642 2 2567999999999521111111
Q ss_pred --HHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcC
Q 024713 138 --IVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (263)
Q Consensus 138 --~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG 174 (263)
...++++++.+++ + +||||||+|||+|+.++||
T Consensus 59 ~~~~~~~i~~~~~~~---~-~PilGiC~G~Q~l~~~~gg 93 (191)
T 2ywd_A 59 EYGIEDEVRKRVEEG---S-LALFGTCAGAIWLAKEIVG 93 (191)
T ss_dssp HTTHHHHHHHHHHTT---C-CEEEEETHHHHHHEEEETT
T ss_pred hhhHHHHHHHHHHCC---C-CeEEEECHHHHHHHHHhCC
Confidence 1235566655432 2 8999999999999999998
No 19
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=5.1e-17 Score=136.85 Aligned_cols=125 Identities=15% Similarity=0.225 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHH--HHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIV--EKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~--~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
+++++++++|+++++++. .+ .++.+||||||||++ ..+.... ..+++.+.+.+ +||||||+|||
T Consensus 14 ~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~--~~~~~~~~~~~~~~~i~~~~-----~PilGIC~G~Q 79 (186)
T 2ywj_A 14 EHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES--TAIGKLMKKYGLLEKIKNSN-----LPILGTCAGMV 79 (186)
T ss_dssp HHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH--HHHHHHHHHTTHHHHHHTCC-----CCEEEETHHHH
T ss_pred HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc--hhhhhhhhccCHHHHHHhcC-----CcEEEECHHHH
Confidence 467899999999988863 22 266799999999975 2221111 13455444455 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecC--C-----CCCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENT--S-----IEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~--~-----~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
+|+.++||++..+... +...+... . ..+.+|.++ ++..++++|+++|. .
T Consensus 80 ll~~~~gg~~~~lg~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~H~~~v~--------~ 135 (186)
T 2ywj_A 80 LLSKGTGINQILLELM-------DITVKRNAYGRQVDSFEKEIEFKDL---------GKVYGVFIRAPVVD--------K 135 (186)
T ss_dssp HHSSCCSSCCCCCCCS-------SEEEETTTTCSSSCCEEEEEEETTT---------EEEEEEESSCCEEE--------E
T ss_pred HHHHHhCCCcCccCCC-------ceeEEeccCCCcccceecccccccC---------CcEEEEEEecceee--------e
Confidence 9999999873222211 11111000 0 011233332 23356889999873 4
Q ss_pred C-CCCcEEEEEEcc
Q 024713 240 L-SRFFKMLTTSAD 252 (263)
Q Consensus 240 L-~~~f~v~Ats~D 252 (263)
+ +++++++|++ |
T Consensus 136 l~~~~~~v~a~s-d 148 (186)
T 2ywj_A 136 ILSDDVEVIARD-G 148 (186)
T ss_dssp ECCTTCEEEEEE-T
T ss_pred cCCCCeEEEEEE-C
Confidence 6 7889999999 5
No 20
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=161.31 Aligned_cols=136 Identities=14% Similarity=0.175 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 83 ASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 83 ~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+|.. ...++|+++|+.++++|++.+.+++.. .++||||||||++. .+......+.+.+++.+ +||||||
T Consensus 39 ~q~~~-liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s--~~~~~~~~~~~~i~~~g-----~PvLGIC 108 (697)
T 2vxo_A 39 AQYGK-VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS--VYAEDAPWFDPAIFTIG-----KPVLGIC 108 (697)
T ss_dssp --CHH-HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC---------CCCCCGGGTTSS-----CCEEEEE
T ss_pred CchHH-HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCc--ccCccchhHHHHHHhCC-----CCEEEEC
Confidence 34443 356799999999999999887776653 47999999999972 11111011223334455 9999999
Q ss_pred chhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCC
Q 024713 163 LGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSR 242 (263)
Q Consensus 163 lG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~ 242 (263)
+|||+|+.++||++.... ..+.++.++.+. . .++||+++++. ..++++|+++| ..+++
T Consensus 109 ~G~QlLa~~lGG~v~~~~--~~e~G~~~v~~~---~-~~~Lf~~l~~~--------~~v~~~H~~~V--------~~lp~ 166 (697)
T 2vxo_A 109 YGMQMMNKVFGGTVHKKS--VREDGVFNISVD---N-TCSLFRGLQKE--------EVVLLTHGDSV--------DKVAD 166 (697)
T ss_dssp HHHHHHHHHTTCCBCC---------CEEEEEC---T-TSGGGTTCCSE--------EEECCCSSCCB--------SSCCT
T ss_pred HHHHHHHHHhCCeEeecC--CCccceEEEEec---C-CChhhhcCCcc--------Ccceeecccce--------ecCCC
Confidence 999999999999854221 234556666653 2 57899888753 35788999997 35889
Q ss_pred CcEEEEEE
Q 024713 243 FFKMLTTS 250 (263)
Q Consensus 243 ~f~v~Ats 250 (263)
+|+++|++
T Consensus 167 g~~vlA~s 174 (697)
T 2vxo_A 167 GFKVVARS 174 (697)
T ss_dssp TCEEEEEE
T ss_pred CeEEEEEe
Confidence 99999998
No 21
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.64 E-value=2e-15 Score=129.09 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=99.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChh-----
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGL----- 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~----- 134 (263)
.+.|+|+..++. ....+++++|+++|+++++++... .++.+|+||||||++....
T Consensus 2 ~~~i~il~~~~~-------------~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~~~~~ 61 (213)
T 3d54_D 2 KPRACVVVYPGS-------------NCDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYLRPGA 61 (213)
T ss_dssp CCEEEEECCTTE-------------EEHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCSSTTH
T ss_pred CcEEEEEEcCCC-------------CccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhhcccc
Confidence 467999876532 111246889999999998887542 2678999999999863211
Q ss_pred hH--HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH--HcCcccccccccCCCcceeeEEeecCCCCCcccccCChh
Q 024713 135 YY--AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI--ISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPK 210 (263)
Q Consensus 135 ~~--~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~--~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~ 210 (263)
+. ....++++++.+.+ +||||||+|+|+|+.+ ++|++........+.++.++.++. . .+++|+.+++.
T Consensus 62 ~~~~~~~~~~l~~~~~~~-----~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~-~~~l~~~~~~~ 133 (213)
T 3d54_D 62 VAAREKIAFEIAKAAERG-----KLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--N-DTPFTNAFEKG 133 (213)
T ss_dssp HHHTSTTHHHHHHHHHHT-----CEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--C-SSTTSTTSCTT
T ss_pred ccccHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--C-CCceeeccCCC
Confidence 11 12347888888888 9999999999999999 888743111111244455555431 2 57888877642
Q ss_pred hhhhcCCCceeEE--Ee---cceecCCCccccccCCCCcEEEEEEccCCC--CEEEE
Q 024713 211 LIKKLSTDCLVMQ--NH---HYGISPETLRKNLDLSRFFKMLTTSADEDN--KCKPM 260 (263)
Q Consensus 211 ~~~~l~~~~~~~~--~H---s~~V~p~~~~~~~~L~~~f~v~Ats~D~~g--~~fvs 260 (263)
..++. +| +|.+.| +.+.++|++.|.+| ..+.+
T Consensus 134 --------~~~~~~~~H~~~s~~~~~----------~~~~~~a~~~~~ng~~~~i~a 172 (213)
T 3d54_D 134 --------EKIRIPIAHGFGRYVKID----------DVNVVLRYVKDVNGSDERIAG 172 (213)
T ss_dssp --------CEEEEECCBSSCEEECSS----------CCEEEEEESSCSSCCGGGEEE
T ss_pred --------CEEEEEeecCceEEEecC----------CCcEEEEEcCCCCCCccceeE
Confidence 23444 78 666533 45678888855446 34443
No 22
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.61 E-value=2.1e-15 Score=136.26 Aligned_cols=161 Identities=15% Similarity=0.196 Sum_probs=97.3
Q ss_pred CCcEEEEeCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEecCCC----------hhhHHH---hcccC
Q 024713 59 YRPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEP----------EDVLFE---KLELV 120 (263)
Q Consensus 59 ~~PvIGI~~~~-~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~i~~~~~----------~~~l~~---~l~~~ 120 (263)
.++.|+|+... + ...+|. +++++|+++|+ +++++.++.. .+.+.+ .++.+
T Consensus 24 ~~~~Iavv~d~~~----------~~~s~~--si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (289)
T 2v4u_A 24 KICSIALVGKYTK----------LRDCYA--SVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKA 91 (289)
T ss_dssp EEEEEEEEESCSS----------CCGGGH--HHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHC
T ss_pred CceEEEEEecCcC----------CCccHH--HHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhC
Confidence 34679998433 2 123343 67888988865 4455544321 111111 36679
Q ss_pred CEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccccc-----ccC-----------
Q 024713 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILES-----FNA----------- 184 (263)
Q Consensus 121 dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~-----~~~----------- 184 (263)
||||||||++. + ......++++++++.+ +||||||+|||+|+.++||++..+.. +..
T Consensus 92 dgiil~GG~~~-~-~~~~~~~~i~~~~~~~-----~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~ 164 (289)
T 2v4u_A 92 DGILVPGGFGI-R-GTLGKLQAISWARTKK-----IPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMP 164 (289)
T ss_dssp SEEEECSCCSS-T-THHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECC
T ss_pred CEEEecCCCCc-h-hHHHHHHHHHHHHHcC-----CcEEEECccHHHHHHHHhccccccccCcccccCccccccceecch
Confidence 99999999874 2 2233447888888888 99999999999999999998521111 110
Q ss_pred -CC----------cceeeEEeecCCCCCcccccCChhhhhhcCCCce--eEEEecceecCCCccccccCC-CCcEEEEEE
Q 024713 185 -AD----------QASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCL--VMQNHHYGISPETLRKNLDLS-RFFKMLTTS 250 (263)
Q Consensus 185 -~~----------~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~--~~~~Hs~~V~p~~~~~~~~L~-~~f~v~Ats 250 (263)
+. +..++.++. . .+.+++.++ .... .++.|+|+|.++.+ ..|+ ++|+++|++
T Consensus 165 ~h~~~~~~~~~~~g~~~v~~~~--~-~s~l~~~~~--------~~~~v~~~H~H~y~vn~~~v---~~l~~~g~~v~A~s 230 (289)
T 2v4u_A 165 EHNPGNLGGTMRLGIRRTVFKT--E-NSILRKLYG--------DVPFIEERHRHRFEVNPNLI---KQFEQNDLSFVGQD 230 (289)
T ss_dssp BCCTTCSSCBCEEEEEEEEESC--S-CCHHHHHTT--------SCSEEEEEEEECEEECGGGS---GGGTTSSEEEEEEE
T ss_pred hhcccccCCccccceEEEEEec--C-CCHHHHhcC--------CCceEEEecccccccCHHHH---HhcccCCeEEEEEc
Confidence 10 012222210 1 344444333 2222 35568899987654 4688 999999999
Q ss_pred cc
Q 024713 251 AD 252 (263)
Q Consensus 251 ~D 252 (263)
.|
T Consensus 231 ~d 232 (289)
T 2v4u_A 231 VD 232 (289)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 23
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.61 E-value=1.4e-15 Score=129.53 Aligned_cols=141 Identities=14% Similarity=0.048 Sum_probs=82.2
Q ss_pred HHHHHHHHHcC-----CeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH----HHHHHHHHHHhCCCCCcceE
Q 024713 88 ASYVKFVESAG-----ARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI----VEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 88 ~s~v~~le~~G-----~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~----~~~li~~a~~~~d~g~~~PI 158 (263)
.+++++|+++| +++++++... . ..+||||||||++....+... ..++++++++.+ +||
T Consensus 14 ~s~~~~l~~~G~~~~~~~~~~~~~~~-------~-~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~Pi 80 (201)
T 1gpw_B 14 MNLYRGVKRASENFEDVSIELVESPR-------N-DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDE-----RYV 80 (201)
T ss_dssp HHHHHHHHHHSTTBSSCEEEEECSCC-------S-SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTT-----CEE
T ss_pred HHHHHHHHHcCCCCCceEEEEECCCc-------c-cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcC-----CeE
Confidence 46778999999 8888876522 1 468999999976632221111 236778887888 999
Q ss_pred EeccchhHHHHHHHc--CcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccc
Q 024713 159 YAHCLGFELLTMIIS--KDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRK 236 (263)
Q Consensus 159 LGIClG~QlL~~~~G--G~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~ 236 (263)
||||+|||+|+.++| |+...+...+......+....+... +++++...+. ....++++|++.|.+.
T Consensus 81 lGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~~~~~~~g-~~~l~~~~~~-------~~~~v~~~H~~~v~~~---- 148 (201)
T 1gpw_B 81 VGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMG-WNEVIFKDTF-------PNGYYYFVHTYRAVCE---- 148 (201)
T ss_dssp EEETHHHHTTSSEETTEEEEECCCSSSEEEEECCCSSCSEEE-EEEEEESSSS-------CCEEEEEEESEEEEEC----
T ss_pred EEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCCCCCCccc-ceeeEeccCC-------CCCeEEEECcceeccC----
Confidence 999999999999986 4322221111100000000000000 2234433221 2346899999998532
Q ss_pred cccCCCCcEEEEEEccCCCCEEEE
Q 024713 237 NLDLSRFFKMLTTSADEDNKCKPM 260 (263)
Q Consensus 237 ~~~L~~~f~v~Ats~D~~g~~fvs 260 (263)
.++++|++.| +|..+.+
T Consensus 149 ------~~~vla~s~~-~g~~~~a 165 (201)
T 1gpw_B 149 ------EEHVLGTTEY-DGEIFPS 165 (201)
T ss_dssp ------GGGEEEEEEE-TTEEEEE
T ss_pred ------CCEEEEEEcc-CCceEEE
Confidence 3679999843 3544444
No 24
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.57 E-value=7.6e-15 Score=145.72 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=90.0
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC--Ch--hhHHHHHHHHHHHHHhCCCCCcce
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK--DG--LYYAIVEKVFKKILEKNDAGDHFP 157 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~--~~--~~~~~~~~li~~a~~~~d~g~~~P 157 (263)
+++|.. ++++++++.|+.+++++++.+.+ +..+|||||+||+.. +. .+.....++++++++.+ +|
T Consensus 455 gdsf~~-~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~-----iP 523 (645)
T 3r75_A 455 EDHFTA-MIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG-----KP 523 (645)
T ss_dssp SCTHHH-HHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT-----CC
T ss_pred CccHHH-HHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC-----CC
Confidence 456664 69999999999999999876432 457999999999863 11 22333457889988888 99
Q ss_pred EEeccchhHHHHHHHcCcccccccccCCCcceeeEEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCcccc
Q 024713 158 LYAHCLGFELLTMIISKDKNILESFNAADQASTLQFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKN 237 (263)
Q Consensus 158 ILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~ 237 (263)
|||||+|||+|+.++||++... ....++...++.+. .+.+|.++ +|++.+...+-.-.
T Consensus 524 iLGIClG~QlLa~alGG~V~~~-~~~~~G~~~~i~~~-----~~~l~~~~----------------~~~~~v~~~h~~~~ 581 (645)
T 3r75_A 524 FMAVCLSHQILNAILGIPLVRR-EVPNQGIQVEIDLF-----GQRERVGF----------------YNTYVAQTVRDEMD 581 (645)
T ss_dssp EEEETHHHHHHHHHTTCCEEEE-EEEEEEEEEEEEET-----TEEEEEEE----------------EEEEEEBCSCSEEE
T ss_pred EEEECHHHHHHHHHhCCEEEcC-CCcccccceEEeee-----cCcceecC----------------CCcEEEEEehhhcc
Confidence 9999999999999999985322 11122222333221 23344332 34443322221112
Q ss_pred ccCCCCcEEEEEEcc
Q 024713 238 LDLSRFFKMLTTSAD 252 (263)
Q Consensus 238 ~~L~~~f~v~Ats~D 252 (263)
..++++|+++|++.|
T Consensus 582 ~~lp~g~~v~A~s~d 596 (645)
T 3r75_A 582 VDGVGTVAISRDPRT 596 (645)
T ss_dssp ETTTEEEEEEECTTT
T ss_pred ccCCCCeEEEEEcCC
Confidence 458899999999843
No 25
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.57 E-value=6.8e-15 Score=125.36 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHH----HHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYA----IVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~----~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
.+++++|+++|+++++++.. + .++.+||||||||++..+.+.. ...++++++++.+ +||||||+
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~-----~PilGIC~ 83 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERG-----LPFLGICV 83 (200)
T ss_dssp HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTT-----CCEEECTH
T ss_pred HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcC-----CeEEEEcH
Confidence 45788999999999888632 2 2668999999997653222111 1347888888888 99999999
Q ss_pred hhHHHHHH---HcC
Q 024713 164 GFELLTMI---ISK 174 (263)
Q Consensus 164 G~QlL~~~---~GG 174 (263)
|||+|+.+ +||
T Consensus 84 G~Qll~~~~~~~Gg 97 (200)
T 1ka9_H 84 GMQVLYEGSEEAPG 97 (200)
T ss_dssp HHHTTSSEETTSTT
T ss_pred HHHHHHHhccccCC
Confidence 99999998 575
No 26
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.55 E-value=1.1e-14 Score=141.72 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---hhHHHhcccCCEEEECCCCCCChh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dGlilpGG~~~~~~ 134 (263)
..++.||+...... ..+.+.|+.. ++.++....|+++.+++++.+. +.+++.++.+||||||||+.. +.
T Consensus 298 ~~~v~I~ivgkyv~------l~D~y~Sv~~-aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd-~~ 369 (550)
T 1vco_A 298 ERTVKIAIAGKYVK------MPDAYLSLLE-ALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGV-RG 369 (550)
T ss_dssp SEEEEEEEEESCC---------CTTHHHHH-HHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSS-TT
T ss_pred CCceEEcccCCeEE------EEecHHHHHH-HHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCC-cc
Confidence 35688998765321 1123344443 4555666677788887765421 224445778999999999863 33
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCccccc
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNIL 179 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l 179 (263)
.. ....+++++.+.+ +|+||||+|||+|+.++||++..+
T Consensus 370 ~~-g~i~~ir~a~e~~-----iPiLGICLGmQlL~~a~Gg~v~~l 408 (550)
T 1vco_A 370 IE-GKVRAAQYARERK-----IPYLGICLGLQIAVIEFARNVAGL 408 (550)
T ss_dssp HH-HHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHTSCC
T ss_pred hh-hhHHHHHHHHHCC-----CcEEEECcCHHHHHHHhCcccccC
Confidence 22 2237888888888 999999999999999999875433
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.55 E-value=3.6e-15 Score=129.08 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=67.0
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCCh-
Q 024713 55 SKLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDG- 133 (263)
Q Consensus 55 ~~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~- 133 (263)
|.-..++.|+|+..++ +| .+++++|+++|+++++++. .+ .++.+||||||||+....
T Consensus 18 ~~~~~~~~I~il~~~~-------------~~--~~~~~~l~~~G~~~~~~~~---~~----~l~~~Dglil~GG~~~~~~ 75 (219)
T 1q7r_A 18 LYFQSNMKIGVLGLQG-------------AV--REHVRAIEACGAEAVIVKK---SE----QLEGLDGLVLPGGESTTMR 75 (219)
T ss_dssp CCCCCCCEEEEESCGG-------------GC--HHHHHHHHHTTCEEEEECS---GG----GGTTCSEEEECCCCHHHHH
T ss_pred CCCCCCCEEEEEeCCC-------------Cc--HHHHHHHHHCCCEEEEECC---HH----HHhhCCEEEECCCChHHHH
Confidence 3334568999995431 12 1356889999999988864 22 256799999999975110
Q ss_pred hhHHH--HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCc
Q 024713 134 LYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 134 ~~~~~--~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
.+... ..++++++.+++ +||||||+|||+|+.++||+
T Consensus 76 ~~~~~~~~~~~i~~~~~~~-----~PilGIC~G~QlL~~~~gg~ 114 (219)
T 1q7r_A 76 RLIDRYGLMEPLKQFAAAG-----KPMFGTCAGLILLAKRIVGY 114 (219)
T ss_dssp HHHHHTTCHHHHHHHHHTT-----CCEEEETTHHHHHEEEEESS
T ss_pred HHhhhhHHHHHHHHHHHcC-----CeEEEECHHHHHHHHHhCCC
Confidence 11111 147788888888 99999999999999999986
No 28
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.49 E-value=1.5e-14 Score=141.50 Aligned_cols=167 Identities=12% Similarity=0.116 Sum_probs=98.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH-
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI- 138 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~- 138 (263)
+|.|+|+.... ++. .+++++|+++|+.+++++.. +. ..++.+||||||||++..+.+...
T Consensus 4 m~~I~Iid~~~-------------g~~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~~~~~l~ 64 (555)
T 1jvn_A 4 MPVVHVIDVES-------------GNL-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGHFVDNLF 64 (555)
T ss_dssp SCEEEEECCSC-------------SCC-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEEECCC-------------CCH-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHhHhhhhh
Confidence 48899996321 111 36888999999999887632 21 136689999999976633322111
Q ss_pred ---HHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH--cCccccccc-------ccCCCccee-eEEeecCCCCCcccc
Q 024713 139 ---VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII--SKDKNILES-------FNAADQAST-LQFMENTSIEGTVFQ 205 (263)
Q Consensus 139 ---~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~--GG~~~~l~~-------~~~~~~~~p-l~~~~~~~~~s~Lf~ 205 (263)
..++++.+++.+ +||||||+|||+|+.++ ||....+.. +.......+ +.|..... .++||+
T Consensus 65 ~~~~~~~i~~~~~~g-----~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~-~~~L~~ 138 (555)
T 1jvn_A 65 NRGFEKPIREYIESG-----KPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIP-SENLFF 138 (555)
T ss_dssp HTTCHHHHHHHHHTT-----CCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCC-CTTCCT
T ss_pred hccHHHHHHHHHHcC-----CcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEE-cCHHHh
Confidence 236778887888 99999999999999986 222122211 111001112 23432111 266777
Q ss_pred cCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCCC-EEEEEe
Q 024713 206 RFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNK-CKPMTI 262 (263)
Q Consensus 206 ~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~-~fvs~v 262 (263)
.+++. ..+|++|||.+...... .+.|++++.++|++.+ +. .++.++
T Consensus 139 ~l~~~--------~~~~~vHS~~~~~i~~~-~~~L~~g~~vlA~s~~--~~D~~i~ai 185 (555)
T 1jvn_A 139 GLDPY--------KRYYFVHSFAAILNSEK-KKNLENDGWKIAKAKY--GSEEFIAAV 185 (555)
T ss_dssp TCCTT--------SCEEEEESEECBCCHHH-HHHHHHTTCEEEEEEE--TTEEEEEEE
T ss_pred hCCCC--------ceEEEEEEEEEEecccc-cccCCCCCEEEEEEcC--CCCCeEEEE
Confidence 66542 35788999987542210 0012556789998842 32 566554
No 29
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=1.9e-13 Score=117.18 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH------HHHHHHHHHHhCCCCCcceEEec
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI------VEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~------~~~li~~a~~~~d~g~~~PILGI 161 (263)
.++.++|+++|+++++++. .++ ++.+||||||||. +..+.. ..++++++.+++ +|||||
T Consensus 33 ~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~---~~~~~~~~~~~~~~~~i~~~~~~g-----~PilGI 97 (208)
T 2iss_D 33 REHVEALHKLGVETLIVKL---PEQ----LDMVDGLILPGGE---STTMIRILKEMDMDEKLVERINNG-----LPVFAT 97 (208)
T ss_dssp HHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECSSC---HHHHHHHHHHTTCHHHHHHHHHTT-----CCEEEE
T ss_pred HHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCc---HHHHHhhhhhhhHHHHHHHHHHCC-----CeEEEE
Confidence 3477889999999888753 222 5679999999984 222221 236778887888 999999
Q ss_pred cchhHHHHHHHcCc
Q 024713 162 CLGFELLTMIISKD 175 (263)
Q Consensus 162 ClG~QlL~~~~GG~ 175 (263)
|+|||+|+.++||.
T Consensus 98 C~G~QlL~~~~gg~ 111 (208)
T 2iss_D 98 CAGVILLAKRIKNY 111 (208)
T ss_dssp THHHHHHEEEEC--
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999884
No 30
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.47 E-value=4.2e-14 Score=122.69 Aligned_cols=89 Identities=18% Similarity=0.323 Sum_probs=65.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc---CCeEEEEecCCChhhHHHhcccCCEEEECCCCCC-Chhh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA---GARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGLY 135 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~---G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~-~~~~ 135 (263)
|++|||+...+. | .+|+++|+++ |+++++++. .+. ++.+||||||||.+. ...+
T Consensus 3 ~~~I~Il~~~~~-------------~--~~~~~~l~~~~~~G~~~~~~~~---~~~----l~~~dglil~GG~~~~~~~~ 60 (227)
T 2abw_A 3 EITIGVLSLQGD-------------F--EPHINHFIKLQIPSLNIIQVRN---VHD----LGLCDGLVIPGGESTTVRRC 60 (227)
T ss_dssp CEEEEEECTTSC-------------C--HHHHHHHHTTCCTTEEEEEECS---HHH----HHTCSEEEECCSCHHHHHHH
T ss_pred CcEEEEEeCCCC-------------c--HHHHHHHHHhccCCeEEEEEcC---ccc----cccCCEEEECCCcHHHHHHH
Confidence 688999985521 1 3578899999 988887752 232 457999999999741 1111
Q ss_pred HH----HHHHHHHHHHHh-CCCCCcceEEeccchhHHHHHHHcCc
Q 024713 136 YA----IVEKVFKKILEK-NDAGDHFPLYAHCLGFELLTMIISKD 175 (263)
Q Consensus 136 ~~----~~~~li~~a~~~-~d~g~~~PILGIClG~QlL~~~~GG~ 175 (263)
.. ...++++.+.+. + +||||||+|||+|+.++||.
T Consensus 61 ~~~d~~~~~~~i~~~~~~~g-----~PilGIC~G~QlL~~~~gg~ 100 (227)
T 2abw_A 61 CAYENDTLYNALVHFIHVLK-----KPIWGTCAGCILLSKNVENI 100 (227)
T ss_dssp TTHHHHHHHHHHHHHHHTSC-----CCEEEETHHHHHTEEEEECC
T ss_pred HHHhHHHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHHhcCC
Confidence 11 124677777787 8 99999999999999999886
No 31
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.46 E-value=1.6e-13 Score=116.25 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=77.3
Q ss_pred HHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCC-hhhHHH--HHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 90 YVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKD-GLYYAI--VEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~-~~~~~~--~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
+.++++++|+++++++. .++ ++.+||||||||+... ..+... ..++++.+.+++ +|+||||+|||
T Consensus 16 ~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~-----~pilgIC~G~q 83 (196)
T 2nv0_A 16 HIHAIEACGAAGLVVKR---PEQ----LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQG-----KPMFGTCAGLI 83 (196)
T ss_dssp HHHHHHHTTCEEEEECS---GGG----GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTT-----CCEEEETHHHH
T ss_pred HHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCC-----CcEEEECHHHH
Confidence 45789999999888753 222 5679999999997410 011111 146788888888 99999999999
Q ss_pred HHHHHHcCcccccccccCCCcceeeEEeecC--CC-----CCcccccCChhhhhhcCCCceeEEEecceecCCCcccccc
Q 024713 167 LLTMIISKDKNILESFNAADQASTLQFMENT--SI-----EGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLD 239 (263)
Q Consensus 167 lL~~~~GG~~~~l~~~~~~~~~~pl~~~~~~--~~-----~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~ 239 (263)
+|+.++||+. ... -+..+...+... .. .+..+.+ +.++..++++|++.+. .
T Consensus 84 ~l~~~~gg~~--~~~----lg~~~~~~~~~~~g~~~~~~~~~~~~~~--------~g~~~~~~~~h~~~v~--------~ 141 (196)
T 2nv0_A 84 ILAKEIAGSD--NPH----LGLLNVVVERNSFGRQVDSFEADLTIKG--------LDEPFTGVFIRAPHIL--------E 141 (196)
T ss_dssp HHSBCCC------CC----CCCSCEEEECCCSCTTTSEEEEEECCTT--------CSSCEEEEEESCCEEE--------E
T ss_pred HHHHHhcCCC--CCc----ccCCceeEeccCCCcccccccCCccccc--------CCCceEEEEEecceec--------c
Confidence 9999999862 111 111222211100 00 0112222 2334457788998762 3
Q ss_pred CCCCcEEEEEE
Q 024713 240 LSRFFKMLTTS 250 (263)
Q Consensus 240 L~~~f~v~Ats 250 (263)
++++++++|++
T Consensus 142 ~~~~~~v~a~~ 152 (196)
T 2nv0_A 142 AGENVEVLSEH 152 (196)
T ss_dssp ECTTCEEEEEE
T ss_pred cCCCcEEEEEE
Confidence 67788999998
No 32
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.43 E-value=1.9e-13 Score=133.01 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEEEecCCChhhHH----HhcccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIPLIYNEPEDVLF----EKLELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~i~~~~~~~~l~----~~l~~~dGlilpGG~~ 130 (263)
.++.||+.+.... -.+.| .|+.++|+.+|+ ++++++++ .+.+. +.+..+||||||||+.
T Consensus 288 ~~v~i~~vGkyv~---------l~D~y--~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg 354 (545)
T 1s1m_A 288 SEVTIGMVGKYIE---------LPDAY--KSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFG 354 (545)
T ss_dssp EEEEEEEEESSCS---------SGGGG--HHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCS
T ss_pred CeEEeCCcCCeEE---------EEEHH--HHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCC
Confidence 4578898764311 12333 457777877775 45666554 23332 3367899999999987
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccc
Q 024713 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNI 178 (263)
Q Consensus 131 ~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~ 178 (263)
. +.. ....++++++++.+ +|+||||+|||+|+.++||++..
T Consensus 355 ~-~~~-~g~~~~i~~a~~~~-----~PiLGIClG~Qll~va~Gg~v~~ 395 (545)
T 1s1m_A 355 Y-RGV-EGMITTARFARENN-----IPYLGICLGMQVALIDYARHVAN 395 (545)
T ss_dssp S-TTH-HHHHHHHHHHHHTT-----CCEEEETHHHHHHHHHHHHHHHC
T ss_pred C-ccc-hhhHHHHHHHHHCC-----CcEEEECChHHHHHHHhCCceec
Confidence 3 332 22347888888888 99999999999999999998543
No 33
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.38 E-value=8.2e-13 Score=127.36 Aligned_cols=100 Identities=26% Similarity=0.303 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc----CCeEEEEecCCCh---hhH--HHhcccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA----GARVIPLIYNEPE---DVL--FEKLELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~----G~~~v~i~~~~~~---~~l--~~~l~~~dGlilpGG~ 129 (263)
....||+.+.... ..++|. |+.++|+.+ +.++.+.+.+... +.. .+.++.+||||+|||+
T Consensus 292 ~~v~IalVGKY~~---------l~DaY~--Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~ 360 (535)
T 3nva_A 292 KTINIALVGKYTK---------LKDSYI--SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGF 360 (535)
T ss_dssp CEEEEEEEESCTT---------SGGGGH--HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCC
T ss_pred CeeEEEEEecCcC---------CchhHH--HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCC
Confidence 3457999886532 335564 455666554 4677666554320 000 2347889999999998
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcc
Q 024713 130 AKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDK 176 (263)
Q Consensus 130 ~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~ 176 (263)
.. +.+ ....++++++.+++ +|+||||+|||+|+.++||++
T Consensus 361 G~-~~~-~g~i~~ir~a~~~~-----~PiLGIClG~Qll~va~Gg~v 400 (535)
T 3nva_A 361 GS-RGA-EGKIKAIKYAREHN-----IPFLGICFGFQLSIVEFARDV 400 (535)
T ss_dssp SS-TTH-HHHHHHHHHHHHHT-----CCEEEETHHHHHHHHHHHHTT
T ss_pred CC-ccH-HHHHHHHHHHHHcC-----CcEEEECcchhHHHHHhhccc
Confidence 63 322 22347889998889 999999999999999999985
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.20 E-value=1.3e-10 Score=105.56 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=77.1
Q ss_pred cccCCEEEECCCCCC-----ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceee
Q 024713 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (263)
Q Consensus 117 l~~~dGlilpGG~~~-----~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl 191 (263)
.+++||+|++|++.- +-.|..+..++++++.+++ +|+||||+|+|++..++||... ......+-+..++
T Consensus 97 ~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~-----~~~lgIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~ 170 (301)
T 2vdj_A 97 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNV-----TSTLHICWGAQAGLYHHYGVQK-YPLKEKMFGVFEH 170 (301)
T ss_dssp TSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEE
T ss_pred ccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcC-----CcEEEEcHHHHHHHHHhCCCcc-ccCCCCEEEEEEE
Confidence 467999999999952 2345566779999999998 9999999999998888777422 1112233344555
Q ss_pred EEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCCC
Q 024713 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDNK 256 (263)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g~ 256 (263)
..+. . .++||+++++.+ .+.++|+-.+..+. ...++ +.+++|.| |..|.
T Consensus 171 ~~~~--~-~~pL~~g~~~~f--------~~phsr~~~~~~~~---v~~~p-ga~vLA~S-~~~~~ 219 (301)
T 2vdj_A 171 EVRE--Q-HVKLLQGFDELF--------FAVHSRHTEVRESD---IREVK-ELTLLANS-EEAGV 219 (301)
T ss_dssp EECC--S-SCGGGTTCCSEE--------EEEEEEEEECCHHH---HHTCT-TEEEEEEE-TTTEE
T ss_pred EecC--C-CCccccCCCCce--------EeeeEeccCcCHHH---ccCCC-CCEEEEeC-CCCcc
Confidence 4432 2 678999887653 23444443333222 23443 88999999 44453
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.14 E-value=2.4e-10 Score=104.25 Aligned_cols=116 Identities=10% Similarity=0.104 Sum_probs=75.0
Q ss_pred cccCCEEEECCCCCC-----ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcCcccccccccCCCcceee
Q 024713 117 LELVNGVLYTGGWAK-----DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISKDKNILESFNAADQASTL 191 (263)
Q Consensus 117 l~~~dGlilpGG~~~-----~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG~~~~l~~~~~~~~~~pl 191 (263)
.+++||+|++|++.- +-.|..+..++++++.+++ +|+||||+|+|++..++||... ......+-+..++
T Consensus 109 ~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~-----~p~LGIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~ 182 (312)
T 2h2w_A 109 DRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNV-----YSTMFICWAAQAGLYYFYGIPK-YELPQKLSGVYKH 182 (312)
T ss_dssp TCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEE
T ss_pred ccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcC-----CcEEEECHHHHHHHHHhCCCcc-ccCCCCEEEEEEE
Confidence 367999999999952 2345566779999999988 9999999999998888877422 1112233444555
Q ss_pred EEeecCCCCCcccccCChhhhhhcCCCceeEEEecceecCCCccccccCCCCcEEEEEEccCCC
Q 024713 192 QFMENTSIEGTVFQRFPPKLIKKLSTDCLVMQNHHYGISPETLRKNLDLSRFFKMLTTSADEDN 255 (263)
Q Consensus 192 ~~~~~~~~~s~Lf~~lp~~~~~~l~~~~~~~~~Hs~~V~p~~~~~~~~L~~~f~v~Ats~D~~g 255 (263)
..+. .++||+++++.+ .+.++|+..+..+.. ..+ ++.+++|.| |..|
T Consensus 183 ~~~~----~~pL~~g~~~~f--------~vphsr~~e~~~~~v---~~~-pga~vLA~S-~~~~ 229 (312)
T 2h2w_A 183 RVAK----DSVLFRGHDDFF--------WAPHSRYTEVKKEDI---DKV-PELEILAES-DEAG 229 (312)
T ss_dssp EESS----CCGGGTTCCSEE--------EEEEEEEEECCHHHH---TTC-C-CEEEEEE-TTTE
T ss_pred EEcC----CCccccCCCCce--------EeeEEeccccCHHHc---cCC-CCCEEEEcC-CCCc
Confidence 4442 578898887643 234444433322222 223 478999999 4344
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=98.82 E-value=5.6e-09 Score=110.29 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=64.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhh---
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLY--- 135 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~--- 135 (263)
.||.|+|+.-++.++ ..++.++++.+|+.++.++.+. ...-...++.+|+|+||||.......
T Consensus 1046 ~~pkVaIi~~~G~N~-------------~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGfSygD~l~~g 1111 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNS-------------HVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGFSYGDVLGAG 1111 (1303)
T ss_dssp CCCEEEEEECTTCCC-------------HHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSCGGGGTTSTT
T ss_pred CCCEEEEEecCCcCC-------------HHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCCcchhhhccc
Confidence 589999999987654 2457789999999998876521 00001236789999999998642111
Q ss_pred ---H------HHHHHHHHHHH-HhCCCCCcceEEeccchhHHHHHH
Q 024713 136 ---Y------AIVEKVFKKIL-EKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 136 ---~------~~~~~li~~a~-~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
. ....+.++.++ +++ +|+||||+|||+|+..
T Consensus 1112 ~~~a~~~l~~~~l~~~l~~~~~~~g-----~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1112 EGWAKSILFNHRVRDEFETFFHRPQ-----TLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHSSS-----CEEEEETHHHHHHHTT
T ss_pred hhHHHHHHhchhHHHHHHHHHHhCC-----CcEEEECHHHHHHHHh
Confidence 0 01123445433 456 9999999999999986
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.66 E-value=4.6e-08 Score=84.06 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=66.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC-CChhhHHHhcccCCEEEECCCCCCChhhHHH
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-EPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~-~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~ 138 (263)
.|.|++...-... ...+.|+. ++.++++++|+++..+... .+.++..+.++++|+|++|||... .....
T Consensus 27 ~~~i~~Ip~As~~-------~~~~~~~~-s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~--~l~~~ 96 (206)
T 3l4e_A 27 GKTVTFIPTASTV-------EEVTFYVE-AGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTF--FLLQE 96 (206)
T ss_dssp TCEEEEECGGGGG-------CSCCHHHH-HHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHH--HHHHH
T ss_pred CCEEEEECCCCCC-------CCHHHHHH-HHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHH--HHHHH
Confidence 4788887643210 12345664 7899999999988876432 234445456788999999997652 11111
Q ss_pred -----HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 139 -----~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+.++.+.+++ +|++|||.|+|+|+..
T Consensus 97 L~~~gl~~~l~~~~~~G-----~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 97 LKRTGADKLILEEIAAG-----KLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHTHHHHHHHHHHTT-----CEEEEETHHHHTTSSB
T ss_pred HHHCChHHHHHHHHHcC-----CeEEEECHHHHHhccc
Confidence 236677777777 9999999999999863
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.62 E-value=7.4e-08 Score=83.85 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=64.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~ 138 (263)
.+|.|.|...-.. ....+.|+ .++.++++++|++++.+....+. .+.++++|+|+||||.. ..+.+.
T Consensus 30 ~~~~i~iI~~a~~-------~~~~~~~~-~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~--~~~~~~ 96 (229)
T 1fy2_A 30 GRRSAVFIPFAGV-------TQTWDEYT-DKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNT--FQLLKE 96 (229)
T ss_dssp TCCEEEEECTTCC-------SSCHHHHH-HHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCH--HHHHHH
T ss_pred CCCeEEEEECCCC-------CCCHHHHH-HHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcH--HHHHHH
Confidence 4578888854321 01234565 47899999999988776533222 22367899999999754 222222
Q ss_pred -----HHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 139 -----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 139 -----~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+.++.+++++ +|++|||.|||+|+..
T Consensus 97 l~~~gl~~~l~~~~~~G-----~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 97 SRERGLLAPMADRVKRG-----ALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHTTCHHHHHHHHHTT-----CEEEEETHHHHHTSSB
T ss_pred HHHCChHHHHHHHHHcC-----CEEEEECHHHHhhccc
Confidence 136677666777 9999999999999974
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.11 E-value=1.4e-05 Score=67.10 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---------h-----hHHH-hcccCCEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------D-----VLFE-KLELVNGV 123 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---------~-----~l~~-~l~~~dGl 123 (263)
+...|+|+..++.. ...+ ....+.|+++|+++.++...... . .+.+ ..+.+|+|
T Consensus 22 ~~~kV~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~l 90 (193)
T 1oi4_A 22 LSKKIAVLITDEFE---------DSEF--TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDAL 90 (193)
T ss_dssp CCCEEEEECCTTBC---------THHH--HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEE
T ss_pred cCCEEEEEECCCCC---------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEE
Confidence 44579999876431 1122 24567899999998887654321 0 1111 12468999
Q ss_pred EECCCCCCChh-hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 124 LYTGGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 124 ilpGG~~~~~~-~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
++|||...... ......++++++.+++ +||.|||.|.|+|+.+
T Consensus 91 ivpGG~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 91 LLPGGHSPDYLRGDNRFVTFTRDFVNSG-----KPVFAICHGPQLLISA 134 (193)
T ss_dssp EECCBTHHHHHTTSHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHH
T ss_pred EECCCcCHHHhhhCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHC
Confidence 99999542110 1123457888888888 9999999999999986
No 40
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.67 E-value=9.5e-05 Score=61.66 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-----------h-hhHHH-hcccCCEEEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-----------E-DVLFE-KLELVNGVLY 125 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-----------~-~~l~~-~l~~~dGlil 125 (263)
.+.+|.|+...+- +...++. -++.|+++|+++.++..+.. . ..+.+ ..+.+|+|++
T Consensus 7 t~~~v~il~~~gF---------e~~E~~~--p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~lii 75 (177)
T 4hcj_A 7 TNNILYVMSGQNF---------QDEEYFE--SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVF 75 (177)
T ss_dssp CCEEEEECCSEEE---------CHHHHHH--HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEE
T ss_pred CCCEEEEECCCCc---------cHHHHHH--HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEE
Confidence 4567778765431 2233332 56789999999988765431 0 01111 1346899999
Q ss_pred CCCCCCChhh-HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 126 TGGWAKDGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 126 pGG~~~~~~~-~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
|||....... .....++++++.+++ +||.+||.|.++|+.+
T Consensus 76 PGG~g~~~l~~~~~~~~~l~~~~~~~-----k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 76 VGGIGCITLWDDWRTQGLAKLFLDNQ-----KIVAGIGSGVVIMANA 117 (177)
T ss_dssp CCSGGGGGGTTCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHT
T ss_pred CCCccHHHHhhCHHHHHHHHHHHHhC-----CEEEEecccHHHHHHC
Confidence 9997521111 123457888888888 9999999999999875
No 41
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.61 E-value=0.00019 Score=58.31 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=61.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh------------hhHHHh-cccCCEEEECC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------DVLFEK-LELVNGVLYTG 127 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~------------~~l~~~-l~~~dGlilpG 127 (263)
..|+|+..++- ....+ ....+.|+++|+++..+..+... ..+.+. ...+|.|++||
T Consensus 3 ~ki~il~~~g~---------~~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 71 (168)
T 3l18_A 3 MKVLFLSADGF---------EDLEL--IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPG 71 (168)
T ss_dssp CEEEEECCTTB---------CHHHH--HHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECC
T ss_pred cEEEEEeCCCc---------cHHHH--HHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECC
Confidence 46888887642 11222 23567889999988877653210 001111 23589999999
Q ss_pred CCCCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 128 GWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 128 G~~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
|..... .......++++++.+++ +||.+||.|.++|+.+
T Consensus 72 G~~~~~~~~~~~l~~~l~~~~~~~-----k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 72 GKAPEIVRLNEKAVMITRRMFEDD-----KPVASICHGPQILISA 111 (168)
T ss_dssp BSHHHHHTTCHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHT
T ss_pred CcCHHHhccCHHHHHHHHHHHHCC-----CEEEEECHhHHHHHHC
Confidence 964210 01123457888888888 9999999999999975
No 42
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.47 E-value=0.00029 Score=58.97 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=62.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-------------hhhHHHh--cccCCEEE
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEK--LELVNGVL 124 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-------------~~~l~~~--l~~~dGli 124 (263)
...|+|+..++.. ...+ ...++.|+++|+++.++..+.. ...+.+. ...+|.|+
T Consensus 3 ~~~v~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~li 71 (197)
T 2rk3_A 3 SKRALVILAKGAE---------EMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVV 71 (197)
T ss_dssp CCEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEE
T ss_pred CCEEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEE
Confidence 3568888866431 1222 2356789999999888765321 1122221 26789999
Q ss_pred ECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 125 YTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 125 lpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+|||....... .....++++++.+++ +||.+||-|.++|+.+
T Consensus 72 vpGG~~~~~~l~~~~~~~~~l~~~~~~g-----k~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 72 LPGGNLGAQNLSESAAVKEILKEQENRK-----GLIATICAGPTALLAH 115 (197)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred ECCCchhHHHhhhCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHC
Confidence 99995310111 122347888888888 9999999999999976
No 43
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.44 E-value=0.00057 Score=56.57 Aligned_cols=96 Identities=22% Similarity=0.223 Sum_probs=60.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh-----------------hhHHHh-cccCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE-----------------DVLFEK-LELVN 121 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~-----------------~~l~~~-l~~~d 121 (263)
...|+|+..++. ....+ ....+.|+++|+++..+..+... ..+.+. ...+|
T Consensus 9 ~~~v~il~~~g~---------~~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D 77 (190)
T 2vrn_A 9 GKKIAILAADGV---------EEIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYD 77 (190)
T ss_dssp TCEEEEECCTTC---------BHHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCS
T ss_pred CCEEEEEeCCCC---------CHHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCC
Confidence 356999876642 11122 23567889999888776543210 011111 24689
Q ss_pred EEEECCCC-CCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 122 GVLYTGGW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 122 GlilpGG~-~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.||+|||. .... .......++++++.+++ +||.+||.|.++|+.+
T Consensus 78 ~livpGG~~~~~~~~~~~~l~~~l~~~~~~g-----k~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 78 GLLLPGGTVNPDKLRLEEGAMKFVRDMYDAG-----KPIAAICHGPWSLSET 124 (190)
T ss_dssp EEEECCCTHHHHHHTTCHHHHHHHHHHHHTT-----CCEEEC-CTTHHHHHT
T ss_pred EEEECCCchhHHHHhhCHHHHHHHHHHHHcC-----CEEEEECHhHHHHHhC
Confidence 99999996 2111 11123457888888888 9999999999999985
No 44
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.40 E-value=0.00064 Score=58.53 Aligned_cols=81 Identities=12% Similarity=0.206 Sum_probs=55.1
Q ss_pred HHHHHHHcCCeEEEEecCCCh------------------------------hhHHH-hcccCCEEEECCCCCCC---hh-
Q 024713 90 YVKFVESAGARVIPLIYNEPE------------------------------DVLFE-KLELVNGVLYTGGWAKD---GL- 134 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~------------------------------~~l~~-~l~~~dGlilpGG~~~~---~~- 134 (263)
.++.|+++|+++.++..+... ..+.+ ..+.+|.|++|||.... ..
T Consensus 30 p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~ 109 (232)
T 1vhq_A 30 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF 109 (232)
T ss_dssp HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred HHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhh
Confidence 467889999998887643210 11111 12468999999996420 00
Q ss_pred --------hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHc-Cc
Q 024713 135 --------YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS-KD 175 (263)
Q Consensus 135 --------~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~G-G~ 175 (263)
......++++++.+++ +||.+||.|.++|+.++. |+
T Consensus 110 ~~~~~~~~~~~~l~~~l~~~~~~g-----k~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 110 ASLGSECTVDRELKALAQAMHQAG-----KPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp HHHGGGCCBCHHHHHHHHHHHHTT-----CCEEEETTGGGGHHHHCSSCC
T ss_pred hccccccccCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHHhcCCC
Confidence 0223457888888888 999999999999998865 54
No 45
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.34 E-value=0.00075 Score=56.07 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-Ch------------hhHHHh-cccCCEE
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE------------DVLFEK-LELVNGV 123 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~------------~~l~~~-l~~~dGl 123 (263)
+|...|+|+..++. ....+ ...++.|+++|+++.++..+. .. ..+.+. ...+|.|
T Consensus 3 ~m~kkv~ill~~g~---------~~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~l 71 (190)
T 4e08_A 3 HMSKSALVILAPGA---------EEMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVV 71 (190)
T ss_dssp -CCCEEEEEECTTC---------CHHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEE
T ss_pred CCCcEEEEEECCCc---------hHHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEE
Confidence 35567888876642 11222 235678999999998886643 10 012221 2358999
Q ss_pred EECCCCCCChhh--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 124 LYTGGWAKDGLY--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 124 ilpGG~~~~~~~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
++|||....... .....++++++.+++ +||.+||-|.++|+.+
T Consensus 72 ivpGG~~~~~~~~~~~~~~~~l~~~~~~~-----k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 72 VLPGGLGGSNAMGESSLVGDLLRSQESGG-----GLIAAICAAPTVLAKH 116 (190)
T ss_dssp EECCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred EECCCChHHHHhhhCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 999994210111 122347788888888 9999999999999875
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.22 E-value=0.00041 Score=58.58 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=61.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC---------------hhhHHHh-cccCCEEE
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---------------EDVLFEK-LELVNGVL 124 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~---------------~~~l~~~-l~~~dGli 124 (263)
..|+|+..++.. ...+ ...++.|+++|+++.++..+.. ...+.+. ...+|.|+
T Consensus 3 ~kV~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~li 71 (205)
T 2ab0_A 3 ASALVCLAPGSE---------ETEA--VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIV 71 (205)
T ss_dssp CEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEE
T ss_pred cEEEEEEcCCCc---------HHHH--HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEE
Confidence 358888766421 1222 2356789999999887765421 0112221 25689999
Q ss_pred ECCCCC-CCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchh-HHHHHH
Q 024713 125 YTGGWA-KDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF-ELLTMI 171 (263)
Q Consensus 125 lpGG~~-~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~-QlL~~~ 171 (263)
+|||.. ... .......++++++.+++ +||.+||.|. ++|+.+
T Consensus 72 vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 72 LPGGIKGAECFRDSTLLVETVKQFHRSG-----RIVAAICAAPATVLVPH 116 (205)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHTT-----CEEEEETHHHHHHTTTT
T ss_pred ECCCcccHHHhccCHHHHHHHHHHHHcC-----CEEEEECHhHHHHHHHC
Confidence 999953 110 11122347888888888 9999999999 999864
No 47
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=97.11 E-value=0.0016 Score=65.23 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh------------hhHHH-hcccCCEEEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------DVLFE-KLELVNGVLY 125 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~------------~~l~~-~l~~~dGlil 125 (263)
....|||+...+.. ...+ ...++.|+++|+.+.++...... ..+.+ ....+|+|||
T Consensus 599 ~grKVaILlaDGfE---------e~El--~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVV 667 (753)
T 3ttv_A 599 KGRVVAILLNDEVR---------SADL--LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIV 667 (753)
T ss_dssp TTCEEEEECCTTCC---------HHHH--HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEE
T ss_pred CCCEEEEEecCCCC---------HHHH--HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEE
Confidence 33579999876431 1222 34778999999999888654310 01111 1224799999
Q ss_pred CCCCCCChhh-HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 126 TGGWAKDGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 126 pGG~~~~~~~-~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
||| ..+... .....++++.+.+++ |||-+||-|-++|+.+
T Consensus 668 PGG-g~~~Lr~d~~vl~~Vre~~~~g-----KpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 668 PCG-NIADIADNGDANYYLMEAYKHL-----KPIALAGDARKFKATI 708 (753)
T ss_dssp CCS-CGGGTTTCHHHHHHHHHHHHTT-----CCEEEEGGGGGGGGGG
T ss_pred CCC-ChHHhhhCHHHHHHHHHHHhcC-----CeEEEECchHHHHHHc
Confidence 999 321111 123458889988888 9999999999999865
No 48
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=97.10 E-value=0.0038 Score=62.07 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---hhHHH-hcccCCEEEECCCCCCC----
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFE-KLELVNGVLYTGGWAKD---- 132 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---~~l~~-~l~~~dGlilpGG~~~~---- 132 (263)
-.|+|+...++ . ...-....+++|+++|+.++++...... ..+.. ....+|+||||||..-.
T Consensus 538 rKVaILvadG~---------f-E~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~ 607 (688)
T 3ej6_A 538 LRVGVLSTTKG---------G-SLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGK 607 (688)
T ss_dssp CEEEEECCSSS---------S-HHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTT
T ss_pred CEEEEEccCCC---------c-cHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccc
Confidence 36888875531 0 1122234678999999999998653210 01111 12358999999996521
Q ss_pred --hh-h--HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 133 --GL-Y--YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 133 --~~-~--~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+. + ......+++.+.+++ |||-+||-|-++|..+
T Consensus 608 ~~~d~Lr~~~~a~~fV~e~~~hg-----KpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 608 GAMSPLFPAGRPSQILTDGYRWG-----KPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTCCTTSCTTHHHHHHHHHHHTT-----CCEEEEGGGHHHHHHT
T ss_pred cchhhhccCHHHHHHHHHHHHcC-----CEEEEeCccHHHHHHc
Confidence 11 1 124568999999999 9999999999999875
No 49
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.10 E-value=0.0026 Score=53.91 Aligned_cols=95 Identities=16% Similarity=0.032 Sum_probs=60.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH--------HcCCeEEEEecCCCh------------hhHHHh-ccc
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE--------SAGARVIPLIYNEPE------------DVLFEK-LEL 119 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le--------~~G~~~v~i~~~~~~------------~~l~~~-l~~ 119 (263)
..|+|+..++-.. ..+ ...++.|+ +.|+++..+..+... ..+.+. .+.
T Consensus 6 ~~v~ill~~g~~~---------~e~--~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~ 74 (212)
T 3efe_A 6 KKAFLYVFNTMSD---------WEY--GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLES 74 (212)
T ss_dssp CCEEEEECTTCCT---------TTT--HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCT
T ss_pred cEEEEEECCCccH---------HHH--HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccC
Confidence 4688888775321 112 12456677 567787777654210 011111 227
Q ss_pred CCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 120 VNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 120 ~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+|.|++|||............++++++.+++ ++|.+||-|..+|+.+
T Consensus 75 ~D~livpGG~~~~~~~~~~l~~~l~~~~~~g-----k~iaaiC~G~~~La~a 121 (212)
T 3efe_A 75 KDLLILPGGTTWSEEIHQPILERIGQALKIG-----TIVAAICGATDALANM 121 (212)
T ss_dssp TCEEEECCCSCTTSGGGHHHHHHHHHHHHHT-----CEEEEETHHHHHHHHT
T ss_pred CCEEEECCCCccccccCHHHHHHHHHHHHCC-----CEEEEEcHHHHHHHHc
Confidence 8999999997632222233457888888888 9999999999999875
No 50
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.01 E-value=0.0024 Score=55.74 Aligned_cols=78 Identities=9% Similarity=0.153 Sum_probs=52.9
Q ss_pred HHHHHHHcCCeEEEEecCCC----------------h--h------------hHHHh-cccCCEEEECCCCCCCh-----
Q 024713 90 YVKFVESAGARVIPLIYNEP----------------E--D------------VLFEK-LELVNGVLYTGGWAKDG----- 133 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~----------------~--~------------~l~~~-l~~~dGlilpGG~~~~~----- 133 (263)
-+..|+++|+++..+..+.. . . .+.+. .+.+|+|++|||.....
T Consensus 47 p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~ 126 (242)
T 3l3b_A 47 VMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNL 126 (242)
T ss_dssp HHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBST
T ss_pred HHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhhh
Confidence 56789999999888764321 0 0 01111 23589999999964100
Q ss_pred --------hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHH
Q 024713 134 --------LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMII 172 (263)
Q Consensus 134 --------~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~ 172 (263)
.......++++.+.+++ +||.+||-|..+|+.+-
T Consensus 127 ~~~~~~~~~~~~~l~~~lr~~~~~g-----k~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 127 FDEDKENDYILPEFKNAVREFYNAK-----KPIGAVCISPAVVVALL 168 (242)
T ss_dssp TSCC--CCCBCHHHHHHHHHHHHTT-----CCEEEETTHHHHHHHHH
T ss_pred hccccccccCCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHhC
Confidence 11133457888888888 99999999999999764
No 51
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.99 E-value=0.00083 Score=55.71 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=58.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH-cCCeEEEEecCCC------------hhhHHHh-cccCCEEEECC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEP------------EDVLFEK-LELVNGVLYTG 127 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~-~G~~~v~i~~~~~------------~~~l~~~-l~~~dGlilpG 127 (263)
.|+|+..++-.. ..+. ...+.+++ .|+++..+..+.. ...+.+. .+.+|.|++||
T Consensus 3 ~i~ill~~g~~~---------~e~~--~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpG 71 (188)
T 2fex_A 3 RIAIALAQDFAD---------WEPA--LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPG 71 (188)
T ss_dssp EEEEECCTTBCT---------TSSH--HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECC
T ss_pred EEEEEeCCCchH---------HHHH--HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECC
Confidence 588887664321 1121 24567877 8888887765421 0011111 12689999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 128 GWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 128 G~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
|............++++++.+++ +||.+||-|.++|+.+
T Consensus 72 G~~~~~~~~~~l~~~l~~~~~~~-----k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 72 GLSWEKGTAADLGGLVKRFRDRD-----RLVAGICAAASALGGT 110 (188)
T ss_dssp BSHHHHTCCCCCHHHHHHHHHTT-----CEEEEETHHHHHHHHT
T ss_pred CCcccccccHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 96411111112347888888888 9999999999999975
No 52
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0033 Score=58.15 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---------------------------
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE--------------------------- 110 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~--------------------------- 110 (263)
.....|+|+..++. . ..-....++.|+++|+++..+..+...
T Consensus 203 ~~~~ki~ill~dg~---------~--~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 271 (396)
T 3uk7_A 203 GANKRILFLCGDYM---------E--DYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFAL 271 (396)
T ss_dssp CCCCEEEEECCTTE---------E--HHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEEC
T ss_pred hccceEEEEecCCC---------c--chhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeec
Confidence 34567899887642 1 111234567899999998877543210
Q ss_pred -hhHHH-hcccCCEEEECCCCCCChhh---HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 111 -DVLFE-KLELVNGVLYTGGWAKDGLY---YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 111 -~~l~~-~l~~~dGlilpGG~~~~~~~---~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+.+ ....+|.|++|||.. +.. .....++++.+.+++ +||.+||-|.++|+.+
T Consensus 272 ~~~~~~~~~~~~D~livpGg~~--~~~~~~~~~~~~~l~~~~~~~-----~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 272 TTNFDDLVSSSYDALVIPGGRA--PEYLALNEHVLNIVKEFMNSE-----KPVASICHGQQILAAA 330 (396)
T ss_dssp CSCGGGCCGGGCSEEEECCBSH--HHHHTTCHHHHHHHHHHHHTT-----CCEEEEGGGHHHHHHT
T ss_pred cCCHHHCCcccCCEEEECCCcc--hhhhccCHHHHHHHHHHHHCC-----CEEEEEchHHHHHHHc
Confidence 01111 134689999999964 221 123457888888888 9999999999999986
No 53
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.67 E-value=0.0017 Score=53.04 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=37.1
Q ss_pred ccCCEEEECCC--C-CCChh----hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGG--W-AKDGL----YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG--~-~~~~~----~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+|.|++||| . ..... ......++++++.+++ +||.+||.|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~g-----k~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKG-----KMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHC
Confidence 56899999999 4 32111 2223457888888888 9999999999999975
No 54
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.64 E-value=0.0044 Score=57.28 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh----------------------------
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------------------------- 110 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---------------------------- 110 (263)
+...|+|+..++. .... ....++.|+++|+++..+..+..+
T Consensus 11 ~~~kv~ill~dg~---------e~~E--~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 79 (396)
T 3uk7_A 11 NSRTVLILCGDYM---------EDYE--VMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLN 79 (396)
T ss_dssp CCCEEEEECCTTE---------EHHH--HHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECC
T ss_pred cCCeEEEEeCCCc---------cHHH--HHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeecc
Confidence 3467899886542 1112 223567899999998887654211
Q ss_pred hhHHH-hcccCCEEEECCCCCCChhhH---HHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 111 DVLFE-KLELVNGVLYTGGWAKDGLYY---AIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 111 ~~l~~-~l~~~dGlilpGG~~~~~~~~---~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..+.+ ....+|.|++|||.. +... ....++++++.+++ +||.+||-|.++|+.+
T Consensus 80 ~~~~~~~~~~~D~livpGG~~--~~~~~~~~~~~~~l~~~~~~~-----~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 80 ATFDEVDLSKYDGLVIPGGRA--PEYLALTASVVELVKEFSRSG-----KPIASICHGQLILAAA 137 (396)
T ss_dssp SCGGGCCGGGCSEEEECCBSH--HHHHTTCHHHHHHHHHHHHTT-----CCEEEETTTHHHHHHT
T ss_pred CChhhcCcccCCEEEECCCcc--hhhcccCHHHHHHHHHHHHcC-----CEEEEECchHHHHHhc
Confidence 01111 134689999999964 2111 23457888888888 9999999999999986
No 55
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=96.55 E-value=0.0031 Score=53.26 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-Ch------------hhHHHh-cccCCEEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PE------------DVLFEK-LELVNGVL 124 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~------------~~l~~~-l~~~dGli 124 (263)
+.+.|+|+..++.. ...+ ...++.|+++|+++.++..+. .. ..+.+. ...+|.|+
T Consensus 8 m~~~v~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~li 76 (208)
T 3ot1_A 8 MSKRILVPVAHGSE---------EMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALA 76 (208)
T ss_dssp -CCEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEE
T ss_pred cCCeEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEE
Confidence 44679998876531 1222 235678999999888876642 10 011221 24689999
Q ss_pred ECCCCC-CCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchh-HHHHHH
Q 024713 125 YTGGWA-KDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF-ELLTMI 171 (263)
Q Consensus 125 lpGG~~-~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~-QlL~~~ 171 (263)
+|||.. ... .......++++++.+++ +||.+||-|. .+|+.+
T Consensus 77 vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 77 LPGGVGGAQAFADSTALLALIDAFSQQG-----KLVAAICATPALVFAKQ 121 (208)
T ss_dssp ECCCHHHHHHHHTCHHHHHHHHHHHHTT-----CEEEEETTHHHHTTTTT
T ss_pred ECCCchHHHHHhhCHHHHHHHHHHHHcC-----CEEEEEChhHHHHHHHC
Confidence 999952 110 11123457888888888 9999999998 888764
No 56
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.50 E-value=0.012 Score=58.66 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=63.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---hhHHH-hcccCCEEEECCCCC------
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---DVLFE-KLELVNGVLYTGGWA------ 130 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---~~l~~-~l~~~dGlilpGG~~------ 130 (263)
..|||+....++. +... ....++.|+++|+.|+++...... ..+.. ....+|+||||||..
T Consensus 530 ~kVaIL~a~~dGf-------e~~E--~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~ 600 (688)
T 2iuf_A 530 LKVGLLASVNKPA-------SIAQ--GAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGAD 600 (688)
T ss_dssp CEEEEECCTTCHH-------HHHH--HHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTT
T ss_pred CEEEEEecCCCCC-------cHHH--HHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccc
Confidence 5799988632110 1112 234778999999999998764311 01111 134689999999942
Q ss_pred -----------CChhh-HHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 131 -----------KDGLY-YAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 131 -----------~~~~~-~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+..+ .....++++.+.+.+ |||-+||-|-++|..+
T Consensus 601 ~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~g-----KpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 601 SFTVEPSAGSGASTLYPAGRPLNILLDAFRFG-----KTVGALGSGSDALESG 648 (688)
T ss_dssp TTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHT-----CEEEEEGGGHHHHHHT
T ss_pred ccccccccccchhhcccChHHHHHHHHHHHcC-----CEEEEECchHHHHHHc
Confidence 11111 123458899999999 9999999999988764
No 57
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=96.42 E-value=0.011 Score=51.53 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=37.0
Q ss_pred ccCCEEEECCCCCC-Ch-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAK-DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~-~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.+|+|++|||... .. .......++++++.+++ +||.+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANG-----GVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHh
Confidence 35899999999751 00 11123458888888888 9999999999999876
No 58
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.39 E-value=0.0036 Score=53.04 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=60.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCCC-----------hhhHHHhcccCCEEEECCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEP-----------EDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~~-----------~~~l~~~l~~~dGlilpGG 128 (263)
..|+|+..++-.. .... ...+.++++ |+++.++..+.. ...+.+..+.+|.|++|||
T Consensus 4 ~kV~ill~~g~~~---------~E~~--~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG 72 (206)
T 3f5d_A 4 KKALFLILDQYAD---------WEGV--YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGG 72 (206)
T ss_dssp EEEEEECCSSBCT---------TTSH--HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCB
T ss_pred cEEEEEEcCCCcH---------HHHH--HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCC
Confidence 4688887775321 1121 244567776 777776654321 0011222236899999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 129 ~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
..... ......++++.+.+++ +||.+||-|..+|+.+
T Consensus 73 ~~~~~-~~~~l~~~l~~~~~~g-----k~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 73 DSWSN-DNKKLLHFVKTAFQKN-----IPIAAICGAVDFLAKN 109 (206)
T ss_dssp SCCCC-CCHHHHHHHHHHHHTT-----CCEEEETHHHHHHHHT
T ss_pred CChhh-cCHHHHHHHHHHHHcC-----CEEEEECHHHHHHHHc
Confidence 75332 2233457888888888 9999999999999986
No 59
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.37 E-value=0.019 Score=50.18 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=36.7
Q ss_pred ccCCEEEECCCCCC-Ch-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAK-DG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~-~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.+|+|++|||... .. .......++++++.+++ +||.+||.|-.+|+.+
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~g-----k~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRG-----GVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHh
Confidence 35799999999752 00 11123458888888888 9999999999999765
No 60
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=96.30 E-value=0.0087 Score=52.44 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=59.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH-HHcCCeEEEEecCCCh------------hhHHHhcccCCEEEE
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFV-ESAGARVIPLIYNEPE------------DVLFEKLELVNGVLY 125 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~l-e~~G~~~v~i~~~~~~------------~~l~~~l~~~dGlil 125 (263)
+...|+|+..++-. ...+. ..++.| +..|+++.++..+... ..+.+.-..+|.|++
T Consensus 22 m~~~I~ill~~gf~---------~~e~~--~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liV 90 (253)
T 3ewn_A 22 GDEQIAMLVYPGMT---------VMDLV--GPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFA 90 (253)
T ss_dssp CCCEEEEECCTTBC---------HHHHH--HHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEE
T ss_pred CCeEEEEEeCCCCc---------HHHHH--HHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEE
Confidence 33589999877531 12222 345677 5578888777654210 011221223599999
Q ss_pred CCCC-CCChh-hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 126 TGGW-AKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 126 pGG~-~~~~~-~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
|||. ..... ......++++.+.+++ ++|.+||-|..+|+.+
T Consensus 91 PGG~~g~~~l~~~~~l~~~Lr~~~~~g-----k~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 91 PGGTDGTLAAASDAETLAFMADRGARA-----KYITSVCSGSLILGAA 133 (253)
T ss_dssp CCBSHHHHHHTTCHHHHHHHHHHHTTC-----SEEEEETTHHHHHHHT
T ss_pred CCCccchhhhccCHHHHHHHHHHHHcC-----CEEEEEChHHHHHHHc
Confidence 9997 31110 1122346777777777 9999999999999875
No 61
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=96.16 E-value=0.035 Score=49.43 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=37.5
Q ss_pred cccCCEEEECCCCCC--ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~--~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
.+.+|+||+|||... +-.......++++++.+++ ++|.+||.|-.+|+.+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~g-----k~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKND-----RFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcC-----CEEEEECccHHHHHhh
Confidence 357899999999642 1111233558888888888 9999999999887765
No 62
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.15 E-value=0.012 Score=54.38 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=61.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh---------h-----hHHHh-cccCCEEE
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE---------D-----VLFEK-LELVNGVL 124 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~---------~-----~l~~~-l~~~dGli 124 (263)
...|+|+..++. ....+ ...++.|+.+|+++.++..+... . .+.+. ...+|.||
T Consensus 10 mkkV~ILl~dgf---------~~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLi 78 (365)
T 3fse_A 10 KKKVAILIEQAV---------EDTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVV 78 (365)
T ss_dssp -CEEEEECCTTB---------CHHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEE
T ss_pred ceEEEEEECCCC---------cHHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEE
Confidence 347899887642 11222 23567899999988877654221 0 01111 12589999
Q ss_pred ECCCCCCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 125 YTGGWAKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 125 lpGG~~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+|||..... .......++++.+.+++ +||.+||-|..+|+.+
T Consensus 79 VPGG~g~~~l~~~~~l~~~Lr~~~~~g-----k~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 79 IPGGMAPDKMRRNPNTVRFVQEAMEQG-----KLVAAVCHGPQVLIEG 121 (365)
T ss_dssp ECCBTHHHHHTTCHHHHHHHHHHHHTT-----CEEEEETTTHHHHHHT
T ss_pred EECCcchhhccCCHHHHHHHHHHHHCC-----CEEEEECHHHHHHHHc
Confidence 999974110 01123457888888888 9999999999999975
No 63
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.14 E-value=0.0097 Score=50.29 Aligned_cols=50 Identities=8% Similarity=-0.057 Sum_probs=37.6
Q ss_pred cccCCEEEECCCCCCChh---hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGL---YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~---~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
++.+|.||+|||...... ......++++++.+++ ++|.+||-|..+|+.+
T Consensus 72 ~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g-----~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 72 FDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKG-----SKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHH
T ss_pred cCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcC-----CEEEEEcHHHHHHHHc
Confidence 457899999999752111 1223457788887888 9999999999999986
No 64
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=96.11 E-value=0.0064 Score=51.14 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=38.8
Q ss_pred cccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 117 LELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 117 l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
...+|.||+|||....... ....++++++.+++ ++|.+||-|..+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~~g-----~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAAHG-----MALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHHHT-----CEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHhhC-----CEEEEECHHHHHHHHc
Confidence 3568999999997632222 44557888888888 9999999999999986
No 65
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=96.07 E-value=0.0094 Score=51.29 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=58.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH-cCCeEEEEecCCC------------hhhHHHhcccCCEEEEC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES-AGARVIPLIYNEP------------EDVLFEKLELVNGVLYT 126 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~-~G~~~v~i~~~~~------------~~~l~~~l~~~dGlilp 126 (263)
...|+|+..++-. ...+ ...++.|+. .|+++.++..+.. ...+.+ ...+|.|++|
T Consensus 5 ~~~V~ill~~gf~---------~~e~--~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~-~~~~D~livp 72 (231)
T 3noq_A 5 AVQIGFLLFPEVQ---------QLDL--TGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFAD-CPPLDVICIP 72 (231)
T ss_dssp CEEEEEECCTTCC---------HHHH--HHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTT-CCCCSEEEEC
T ss_pred cEEEEEEEeCCCc---------HHHH--HHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhH-CCcCCEEEEC
Confidence 3579999877531 1222 235567777 5777766654321 001112 3568999999
Q ss_pred CCCCCChh-hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 127 GGWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 127 GG~~~~~~-~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
||...... ......++++.+.+++ ++|.+||-|..+|+.+
T Consensus 73 GG~g~~~~~~~~~l~~~lr~~~~~g-----~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 73 GGTGVGALMEDPQALAFIRQQAARA-----RYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CSTTHHHHTTCHHHHHHHHHHHTTC-----SEEEEETTHHHHHHHT
T ss_pred CCCChhhhccCHHHHHHHHHHHhcC-----CEEEEECHHHHHHHHc
Confidence 99752111 1122346777777777 9999999999999875
No 66
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.93 E-value=0.023 Score=56.93 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=62.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC------------hhhHHHh-cccCCEEEECC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFEK-LELVNGVLYTG 127 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~------------~~~l~~~-l~~~dGlilpG 127 (263)
..|+|+..++.. . .-....++.|+.+|+++.++..... ...+.+. ...+|+||+||
T Consensus 535 rkVaILl~dGfe----------~-~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPG 603 (715)
T 1sy7_A 535 RRVAIIIADGYD----------N-VAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPG 603 (715)
T ss_dssp CEEEEECCTTBC----------H-HHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECC
T ss_pred CEEEEEEcCCCC----------H-HHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcC
Confidence 469998876421 1 1122466789999999988765321 0011111 23589999999
Q ss_pred CC-CCCh-hhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHc
Q 024713 128 GW-AKDG-LYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIIS 173 (263)
Q Consensus 128 G~-~~~~-~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~G 173 (263)
|. .... ........+++.+.+++ +||.+||-|..+|+.++|
T Consensus 604 G~~~~~~l~~~~~l~~~Lr~~~~~g-----K~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 604 GAKAAETLSKNGRALHWIREAFGHL-----KAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHTT-----CEEEEETTHHHHHHHHHC
T ss_pred CcccHhhhccCHHHHHHHHHHHhCC-----CEEEEECHHHHHHHHccC
Confidence 94 2110 01123457888888888 999999999999998743
No 67
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=95.86 E-value=0.0082 Score=50.86 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=57.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEecCCC-----------hhhHHHhcccCCEEEECC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIYNEP-----------EDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~--G~~~v~i~~~~~-----------~~~l~~~l~~~dGlilpG 127 (263)
..|+|+..++-. ...+ ...++.|+.+ ++++.++..+.. .+...+....+|.|++||
T Consensus 5 ~~V~ill~~g~~---------~~e~--~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpG 73 (211)
T 3mgk_A 5 YRIDVLLFNKFE---------TLDV--FGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPG 73 (211)
T ss_dssp EEEEEECCTTCC---------HHHH--HHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECC
T ss_pred eEEEEEEeCCcc---------hhHH--HHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECC
Confidence 368998877531 1222 2356778776 356655543220 000001133479999999
Q ss_pred CCCCChh-hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 128 GWAKDGL-YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 128 G~~~~~~-~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
|...... ......++++++.+++ ++|.+||-|..+|+.+
T Consensus 74 G~~~~~~~~~~~~~~~l~~~~~~~-----k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 74 GSGTREKVNDDNFINFIGNMVKES-----KYIISVCTGSALLSKA 113 (211)
T ss_dssp STHHHHHTTCHHHHHHHHHHHHHC-----SEEEECTTHHHHHHHT
T ss_pred CcchhhhcCCHHHHHHHHHHHHcC-----CEEEEEchHHHHHHhc
Confidence 9642110 1123457888888888 9999999999999975
No 68
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.85 E-value=0.021 Score=51.16 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=62.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC-eEEEEecCC----ChhhHHHhcccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNE----PEDVLFEKLELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~-~~v~i~~~~----~~~~l~~~l~~~dGlilpGG~~~~~~ 134 (263)
+|.|.+...... ....|.. .|.++++++|+ .+..+.... +.+++.+.++++|+|+++||... .
T Consensus 56 ~~~I~~IptAs~---------~~~~~~~-~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~--~ 123 (291)
T 3en0_A 56 DAIIGIIPSASR---------EPLLIGE-RYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQL--R 123 (291)
T ss_dssp GCEEEEECTTCS---------SHHHHHH-HHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHH--H
T ss_pred CCeEEEEeCCCC---------ChHHHHH-HHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHH--H
Confidence 478888865532 2245554 58889999999 566666532 12234445788999999999652 1
Q ss_pred hHHH-----HHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 135 YYAI-----VEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 135 ~~~~-----~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
+... ..+.++.+.+++ ..|+.|+|-|.-+++.
T Consensus 124 l~~~l~~t~l~~~L~~~~~~G----~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 124 LCGLLADTPLMDRIRQRVHNG----EISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT----SSEEEEETHHHHTTSS
T ss_pred HHHHHHhCCHHHHHHHHHHCC----CeEEEEeCHHHHhhhH
Confidence 2221 235666666544 1799999999987765
No 69
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=95.70 E-value=0.0057 Score=51.82 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHcCCeEEEEecCCCh-------------------hhH------HH-hcccCCEEEECCCCCCC--hhhHHHHHH
Q 024713 90 YVKFVESAGARVIPLIYNEPE-------------------DVL------FE-KLELVNGVLYTGGWAKD--GLYYAIVEK 141 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~-------------------~~l------~~-~l~~~dGlilpGG~~~~--~~~~~~~~~ 141 (263)
..+.|+++|+++.++..+... ..+ .+ ....+|.|++|||.... -.......+
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 567888999998887653210 001 11 12368999999997521 011123457
Q ss_pred HHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 142 VFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 142 li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+++++.+++ +||.+||.|.++|+.+
T Consensus 114 ~l~~~~~~~-----k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 114 VLQQFAEDG-----RIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred HHHHHHHCC-----CEEEEEChHHHHHHHc
Confidence 888888888 9999999999998865
No 70
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=95.26 E-value=0.0081 Score=51.94 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=36.6
Q ss_pred ccCCEEEECCCCCC--ChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHH
Q 024713 118 ELVNGVLYTGGWAK--DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMI 171 (263)
Q Consensus 118 ~~~dGlilpGG~~~--~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~ 171 (263)
+.+|+|++|||... +-.......++++++.+++ +||.+||.|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~g-----k~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANG-----GVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTT-----CEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcC-----CEEEEECCCHHHHHhc
Confidence 35899999999751 0011123457888888888 9999999999988865
No 71
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=93.31 E-value=0.1 Score=43.45 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=41.2
Q ss_pred HHHHHHHcCCeEEEEecCCCh------------------hh---HHHhcccCCEEEECCCCCCChhhHH---HHHHHHHH
Q 024713 90 YVKFVESAGARVIPLIYNEPE------------------DV---LFEKLELVNGVLYTGGWAKDGLYYA---IVEKVFKK 145 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~~~------------------~~---l~~~l~~~dGlilpGG~~~~~~~~~---~~~~li~~ 145 (263)
-++.|+++|..+..+...... ++ .+...+.+|.|++|||..- +.... ...++++.
T Consensus 23 p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~-~~~l~~~~~l~~~l~~ 101 (194)
T 4gdh_A 23 PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG-AKTLSTTPFVQQVVKE 101 (194)
T ss_dssp HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH-HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh-HhHhhhCHHHHHHHHH
Confidence 456789999887655432110 00 0111345799999999430 11111 12345555
Q ss_pred HHHh-CCCCCcceEEeccchhHHH
Q 024713 146 ILEK-NDAGDHFPLYAHCLGFELL 168 (263)
Q Consensus 146 a~~~-~d~g~~~PILGIClG~QlL 168 (263)
+.++ + +++-.||-|..++
T Consensus 102 ~~~~~~-----k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 102 FYKKPN-----KWIGMICAGTLTA 120 (194)
T ss_dssp HTTCTT-----CEEEEEGGGGHHH
T ss_pred hhhcCC-----ceEEeecccccch
Confidence 4332 4 8999999998433
No 72
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=90.29 E-value=0.18 Score=43.48 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=51.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC--CeEEEEecCCC------------hhhHHHhcccCCEEEEC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYNEP------------EDVLFEKLELVNGVLYT 126 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G--~~~v~i~~~~~------------~~~l~~~l~~~dGlilp 126 (263)
..|+|+..++-. ...+ ...++.|+..+ +++.++. +.. ...+.+ ...+|.|++|
T Consensus 21 ~kV~ill~dGf~---------~~e~--~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~-~~~~D~liVP 87 (236)
T 3bhn_A 21 YKVGIVLFDDFT---------DVDF--FLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE-VKEQDVVLIT 87 (236)
T ss_dssp EEEEEECCTTBC---------HHHH--HHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG-GGGCSEEEEC
T ss_pred CEEEEEeCCCCh---------HHHH--HHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc-ccCCCEEEEc
Confidence 369998876421 1122 23456676655 4665554 210 011222 4578999999
Q ss_pred CC-CCCChhhHHHHHHHHHHHHHhCCCCCcc-eEEeccchhHHHHHH
Q 024713 127 GG-WAKDGLYYAIVEKVFKKILEKNDAGDHF-PLYAHCLGFELLTMI 171 (263)
Q Consensus 127 GG-~~~~~~~~~~~~~li~~a~~~~d~g~~~-PILGIClG~QlL~~~ 171 (263)
|| ... ......+.+++++ +.+++ + +|.+||-|-.+|+.+
T Consensus 88 GG~~g~--~~l~~~~~l~~~L--~~~~~--~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 88 SGYRGI--PAALQDENFMSAL--KLDPS--RQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CCTTHH--HHHHTCHHHHHHC--CCCTT--TCEEEEETTHHHHHHHT
T ss_pred CCccCH--hhhccCHHHHHHH--HhCCC--CCEEEEEcHHHHHHHHc
Confidence 99 331 1111112344444 22222 5 999999999999976
No 73
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=85.82 E-value=3.8 Score=35.88 Aligned_cols=86 Identities=6% Similarity=-0.048 Sum_probs=53.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHhcc---cCCEEEECCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED----VLFEKLE---LVNGVLYTGGWAK 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l~---~~dGlilpGG~~~ 131 (263)
.++.||++...... ......+...+.+.+++.|..+++.....+.+ .+...+. ++||||+.+...
T Consensus 2 ~~~~Ig~i~p~~~~-------~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~- 73 (350)
T 3h75_A 2 SLTSVVFLNPGNST-------ETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY- 73 (350)
T ss_dssp -CCEEEEEECSCTT-------CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-
T ss_pred CCCEEEEECCCCCC-------ChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-
Confidence 35789998854321 12233455567778888999988876554433 2344444 799999986211
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 132 ~~~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
....+++.+.+.+ +|+.-+..
T Consensus 74 ------~~~~~~~~~~~~g-----iPvV~~~~ 94 (350)
T 3h75_A 74 ------VAPQILRLSQGSG-----IKLFIVNS 94 (350)
T ss_dssp ------HHHHHHHHHTTSC-----CEEEEEES
T ss_pred ------hHHHHHHHHHhCC-----CcEEEEcC
Confidence 1235667666667 88876543
No 74
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=82.73 E-value=2 Score=37.48 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=46.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--------ChhhHHHhcccCCEEEECCCCCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--------PEDVLFEKLELVNGVLYTGGWAKD 132 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--------~~~~l~~~l~~~dGlilpGG~~~~ 132 (263)
..|+|..+|.... ..-....+.+++++.|.++....... .....+...+.+|.||.-||-.
T Consensus 6 kki~ii~np~~~~---------~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDG-- 74 (292)
T 2an1_A 6 KCIGIVGHPRHPT---------ALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDG-- 74 (292)
T ss_dssp CEEEEECC----------------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHH--
T ss_pred cEEEEEEcCCCHH---------HHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcH--
Confidence 3689999886321 12234568889999999876543110 0000111234689999999933
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+..+..+.+.+.+ +|++||=.|-
T Consensus 75 -----T~l~a~~~~~~~~-----~P~lGI~~Gt 97 (292)
T 2an1_A 75 -----NMLGAARTLARYD-----INVIGINRGN 97 (292)
T ss_dssp -----HHHHHHHHHTTSS-----CEEEEBCSSS
T ss_pred -----HHHHHHHHhhcCC-----CCEEEEECCC
Confidence 2334444444445 9999997653
No 75
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=81.72 E-value=0.87 Score=36.95 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=37.8
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHH----Hhcc-cCCEEEECCCC
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLE-LVNGVLYTGGW 129 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~-~~dGlilpGG~ 129 (263)
....+|.++|++.-..-..|... +.+..++ ..++++.|++++... ...+ +.+. +.++ .+|-||.+||-
T Consensus 3 ~~~~~~rv~ii~tGdEl~~G~i~-Dsn~~~l----~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 3 GSMTTRSARVIIASTRASSGEYE-DRCGPII----TEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp ----CCEEEEEEECHHHHC-----CCHHHHH----HHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCCCCEEEEEEECCCCCCCcee-eHHHHHH----HHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 44678999998754221112211 2223333 358899999775322 1233 4443 3343 68999999998
Q ss_pred CCC
Q 024713 130 AKD 132 (263)
Q Consensus 130 ~~~ 132 (263)
...
T Consensus 77 s~g 79 (164)
T 3pzy_A 77 GIA 79 (164)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 76
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=81.50 E-value=10 Score=31.73 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=50.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKD 132 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~ 132 (263)
....+||++..... .....-+...+.+.+++.|..+++.....+.+.. ... -.++||||+.+....
T Consensus 6 ~~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~- 76 (293)
T 3l6u_A 6 PKRNIVGFTIVNDK--------HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV- 76 (293)
T ss_dssp ---CEEEEEESCSC--------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT-
T ss_pred CCCcEEEEEEecCC--------cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH-
Confidence 34578999885432 1223345556777888899998887765544322 221 136999999876431
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ....++.+.+.+ +|+.-+
T Consensus 77 -~----~~~~~~~~~~~~-----iPvV~~ 95 (293)
T 3l6u_A 77 -Y----IGSAIEEAKKAG-----IPVFAI 95 (293)
T ss_dssp -T----THHHHHHHHHTT-----CCEEEE
T ss_pred -H----HHHHHHHHHHcC-----CCEEEe
Confidence 1 123556666667 887654
No 77
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=80.71 E-value=13 Score=31.54 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=49.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~ 134 (263)
+.+||++..... + ....-+...+.+.+++.|..+.+.....+.+. ++.. -.++||||+.+.....
T Consensus 2 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-- 71 (313)
T 3m9w_A 2 EVKIGMAIDDLR-------L-ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV-- 71 (313)
T ss_dssp -CEEEEEESCCS-------S-STTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS--
T ss_pred CcEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh--
Confidence 468999875432 1 12334555677889999999888766544332 2221 2469999998764311
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
....++.+.+.+ +|+.-+
T Consensus 72 ----~~~~~~~~~~~~-----iPvV~~ 89 (313)
T 3m9w_A 72 ----LSNVVKEAKQEG-----IKVLAY 89 (313)
T ss_dssp ----CHHHHHHHHTTT-----CEEEEE
T ss_pred ----hHHHHHHHHHCC-----CeEEEE
Confidence 123556666666 887644
No 78
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=80.10 E-value=12 Score=32.02 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=51.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~ 133 (263)
.+..|||+..... .....-+...+.+.+++.|..+.+.....+.+. ++.. -.++||||+.+... .
T Consensus 2 ~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~--~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKS--------SARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG--T 71 (330)
T ss_dssp CCCEEEEEECCSS--------STHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG--G
T ss_pred CCcEEEEEeCCCc--------chHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc--h
Confidence 4678999885532 122344556677888999999887765444332 2221 23699999987642 1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ....++.+.+.+ +|+.-+
T Consensus 72 ~----~~~~~~~~~~~g-----iPvV~~ 90 (330)
T 3uug_A 72 T----LSDVLKQAGEQG-----IKVIAY 90 (330)
T ss_dssp G----GHHHHHHHHHTT-----CEEEEE
T ss_pred h----HHHHHHHHHHCC-----CCEEEE
Confidence 1 124566666777 888644
No 79
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=79.13 E-value=13 Score=31.09 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~ 133 (263)
..-+||++..... .....-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+...
T Consensus 4 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--- 72 (291)
T 3l49_A 4 EGKTIGITAIGTD--------HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNL--- 72 (291)
T ss_dssp TTCEEEEEESCCS--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCH---
T ss_pred CCcEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh---
Confidence 3458999875422 112233555677888889999888766544322 1211 23699999986632
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. .....++.+.+.+ +|+.-+
T Consensus 73 ~---~~~~~~~~~~~~~-----iPvV~~ 92 (291)
T 3l49_A 73 D---VLNPWLQKINDAG-----IPLFTV 92 (291)
T ss_dssp H---HHHHHHHHHHHTT-----CCEEEE
T ss_pred h---hhHHHHHHHHHCC-----CcEEEe
Confidence 1 1234566666667 887654
No 80
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=78.87 E-value=12 Score=31.36 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=50.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~~~ 134 (263)
+..||++..... + ....-+...+.+.+++.|..+.+.....+.+.. +.. -.++||||+.+.....+.
T Consensus 15 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 15 NKTIGVLTTYIS-------D-YIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CCEEEEEESCSS-------S-TTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred CceEEEEeCCCC-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 368999875432 1 223345556778888999998887665443322 211 246999999876431000
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.....++.+.+.+ +|+.-+.
T Consensus 87 ---~~~~~~~~~~~~~-----iPvV~~~ 106 (298)
T 3tb6_A 87 ---PNIGYYLNLEKNG-----IPFAMIN 106 (298)
T ss_dssp ---TTHHHHHHHHHTT-----CCEEEES
T ss_pred ---CcHHHHHHHHhcC-----CCEEEEe
Confidence 0123455555566 7776443
No 81
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=78.50 E-value=5.4 Score=35.26 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh------------------hhH--H-HhcccC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE------------------DVL--F-EKLELV 120 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~------------------~~l--~-~~l~~~ 120 (263)
.|+|..+|... . ..-....+.++|++.|..+.+....... +.. . ...+.+
T Consensus 6 ki~iI~n~~~~--------~-~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 76 (307)
T 1u0t_A 6 SVLLVVHTGRD--------E-ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGC 76 (307)
T ss_dssp EEEEEESSSGG--------G-GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------C
T ss_pred EEEEEEeCCCH--------H-HHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCC
Confidence 58898888542 1 1223456889999999987654322110 000 0 123457
Q ss_pred CEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 121 NGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 121 dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
|.||.-||-. . .....+.+...+ +|++||=.|
T Consensus 77 d~vi~~GGDG---T----~l~a~~~~~~~~-----~pvlgi~~G 108 (307)
T 1u0t_A 77 ELVLVLGGDG---T----FLRAAELARNAS-----IPVLGVNLG 108 (307)
T ss_dssp CCEEEEECHH---H----HHHHHHHHHHHT-----CCEEEEECS
T ss_pred CEEEEEeCCH---H----HHHHHHHhccCC-----CCEEEEeCC
Confidence 8888888832 2 234445554567 999999766
No 82
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=78.37 E-value=1.8 Score=35.96 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=40.5
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHH----Hhc-ccCCEEEECCCC
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKL-ELVNGVLYTGGW 129 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l-~~~dGlilpGG~ 129 (263)
....+|.++|++.-..-..|+ .+.+..+ +..++++.|++++... ...+.+.+. +.+ +++|-||.+||-
T Consensus 26 ~~~~~~rvaIistGdEl~~G~--~Dsn~~~----L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTAHGD--EDHSGPL----VTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp ---CCEEEEEEEECHHHHTTC--CCSHHHH----HHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred cCCCCCEEEEEEECcccCCCC--cCcHHHH----HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 345789999987542211122 1222233 3458999998876443 233445443 333 468999999998
Q ss_pred CCC
Q 024713 130 AKD 132 (263)
Q Consensus 130 ~~~ 132 (263)
...
T Consensus 100 s~g 102 (185)
T 3rfq_A 100 GVT 102 (185)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 83
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=78.19 E-value=1.7 Score=36.26 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=35.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe--EEEE-ecCCChhhHH----Hhcc--cCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR--VIPL-IYNEPEDVLF----EKLE--LVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~--~v~i-~~~~~~~~l~----~~l~--~~dGlilpGG~ 129 (263)
.+|.++|++.-..-..|... +.+..+ +.++|++.|+. ++.. ....+.+.+. +.++ ++|-||.+||-
T Consensus 2 ~~~rv~IIttGdEl~~G~i~-D~n~~~----L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQ-DKGIPA----LEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CCEEEEEEEEECC--------CCHHHH----HHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEECCCCCCCeEE-chHHHH----HHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 36888888744332223221 122233 34578889886 3221 1223444443 3344 58999999998
Q ss_pred CCC
Q 024713 130 AKD 132 (263)
Q Consensus 130 ~~~ 132 (263)
...
T Consensus 77 g~g 79 (195)
T 1di6_A 77 GPA 79 (195)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 84
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=78.12 E-value=13 Score=30.66 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=47.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC--CChh----hHHHh-ccc-CCEEEECCCCCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPED----VLFEK-LEL-VNGVLYTGGWAKD 132 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~--~~~~----~l~~~-l~~-~dGlilpGG~~~~ 132 (263)
|.||++..... .....-+.....+.+++.|..+.+...+ .+.+ .+... -.+ +||||+.+....
T Consensus 1 ~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~- 71 (276)
T 3ksm_A 1 PKLLLVLKGDS--------NAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE- 71 (276)
T ss_dssp CEEEEECSCSS--------STHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT-
T ss_pred CeEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHH-
Confidence 57899875422 1223445566778888899988876532 2322 12221 135 999999885321
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ....++.+.+.+ +|+.-+
T Consensus 72 -~----~~~~~~~~~~~~-----ipvV~~ 90 (276)
T 3ksm_A 72 -D----LTPSVAQYRARN-----IPVLVV 90 (276)
T ss_dssp -T----THHHHHHHHHTT-----CCEEEE
T ss_pred -H----HHHHHHHHHHCC-----CcEEEE
Confidence 0 124556666667 787644
No 85
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=78.03 E-value=9.8 Score=31.77 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~ 138 (263)
...+||++..... + ....-+...+.+.+++.|..+++.....+.+.... + ++||||+.+... +.
T Consensus 7 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~-~vdgiI~~~~~~-~~----- 70 (277)
T 3cs3_A 7 QTNIIGVYLADYG-------G-SFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-K-MVDGAIILDWTF-PT----- 70 (277)
T ss_dssp CCCEEEEEECSSC-------T-TTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-T-TCSEEEEECTTS-CH-----
T ss_pred CCcEEEEEecCCC-------C-hhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-c-cccEEEEecCCC-CH-----
Confidence 4468999874321 1 12233445667788889998877665433222111 2 799999987643 11
Q ss_pred HHHHHHHHHHhCCCCCcceEEecc
Q 024713 139 VEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 139 ~~~li~~a~~~~d~g~~~PILGIC 162 (263)
..++.+.+.+ +|+.-+.
T Consensus 71 --~~~~~l~~~~-----iPvV~~~ 87 (277)
T 3cs3_A 71 --KEIEKFAERG-----HSIVVLD 87 (277)
T ss_dssp --HHHHHHHHTT-----CEEEESS
T ss_pred --HHHHHHHhcC-----CCEEEEe
Confidence 2334444556 7776543
No 86
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=77.63 E-value=2.6 Score=38.74 Aligned_cols=83 Identities=10% Similarity=-0.041 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC-Chh-------------------hHHHhcccCC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE-PED-------------------VLFEKLELVN 121 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~-------------------~l~~~l~~~d 121 (263)
.|||.+.+.+. ........+++||.+.|..+.+=.... ... .+.+..+.+|
T Consensus 40 ~I~iv~K~~~~---------~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 40 SVLVIKKMRDA---------SLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp EEEEEECTTCG---------GGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCC
Confidence 59999998652 234455678999999997765421100 000 0111234689
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
-||.-||-+ . +++.+....+. ..||+||=+|.
T Consensus 111 lvI~lGGDG---T-------~L~aa~~~~~~--~~PvlGiN~G~ 142 (365)
T 3pfn_A 111 FIICLGGDG---T-------LLYASSLFQGS--VPPVMAFHLGS 142 (365)
T ss_dssp EEEEESSTT---H-------HHHHHHHCSSS--CCCEEEEESSS
T ss_pred EEEEEcChH---H-------HHHHHHHhccC--CCCEEEEcCCC
Confidence 999999954 2 33333322211 29999999873
No 87
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=77.44 E-value=7.4 Score=31.27 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhH----HHhcc--cCCEEEECCCC
Q 024713 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVL----FEKLE--LVNGVLYTGGW 129 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l----~~~l~--~~dGlilpGG~ 129 (263)
...+|.++|++.-..- |.. .+.+..++ .++|++.|+.+.... ...+.+.+ .+.++ ++|-||.+||-
T Consensus 10 v~~~~rv~Ii~tGdEl--g~i-~Dsn~~~l----~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 10 APKEVRCKIVTISDTR--TEE-TDKSGQLL----HELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp --CCCEEEEEEECSSC--CTT-TCHHHHHH----HHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred cccCCEEEEEEEcCcc--Cee-ccChHHHH----HHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 4567899998743221 221 12223333 357889999876433 23344444 34455 78999999998
Q ss_pred CC
Q 024713 130 AK 131 (263)
Q Consensus 130 ~~ 131 (263)
..
T Consensus 83 g~ 84 (169)
T 1y5e_A 83 GI 84 (169)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 88
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=76.86 E-value=6 Score=33.29 Aligned_cols=76 Identities=5% Similarity=-0.072 Sum_probs=44.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCC-------------------------ChhhHHH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNE-------------------------PEDVLFE 115 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~-------------------------~~~~l~~ 115 (263)
++.|.+.|.. ......++..+.+.+++. |+++.++.... +.+.+.+
T Consensus 4 IliI~gS~r~--------~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 75 (242)
T 1sqs_A 4 IFIYAGVRNH--------NSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKK 75 (242)
T ss_dssp EEEEECCCCT--------TCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHH
T ss_pred EEEEECCCCC--------CChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHH
Confidence 6677777752 134566777778888887 99888775431 1223334
Q ss_pred hcccCCEEEECCCCCCChhhHHHHHHHHHHH
Q 024713 116 KLELVNGVLYTGGWAKDGLYYAIVEKVFKKI 146 (263)
Q Consensus 116 ~l~~~dGlilpGG~~~~~~~~~~~~~li~~a 146 (263)
.+..+|+|||. .|.....+....+.++++.
T Consensus 76 ~l~~AD~iI~~-sP~y~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 76 ELLESDIIIIS-SPVYLQNVSVDTKNFIERI 105 (242)
T ss_dssp HHHHCSEEEEE-EEECSSSCCHHHHHHHHHT
T ss_pred HHHHCCEEEEE-ccccccCCCHHHHHHHHHH
Confidence 56789999983 2321112223345555554
No 89
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=76.63 E-value=16 Score=30.44 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~ 133 (263)
...+||++..... .....-+...+.+.+++.|..+.+.....+.+. ++.. -.++||||+.+...
T Consensus 6 ~s~~Igvi~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--- 74 (276)
T 3jy6_A 6 SSKLIAVIVANID--------DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--- 74 (276)
T ss_dssp CCCEEEEEESCTT--------SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---
T ss_pred CCcEEEEEeCCCC--------chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---
Confidence 4568999875421 112333455677788889999888776554332 1211 24699999988644
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
...++.+.+.+ +|+.-+.
T Consensus 75 ------~~~~~~l~~~~-----iPvV~i~ 92 (276)
T 3jy6_A 75 ------PQTVQEILHQQ-----MPVVSVD 92 (276)
T ss_dssp ------HHHHHHHHTTS-----SCEEEES
T ss_pred ------HHHHHHHHHCC-----CCEEEEe
Confidence 13445555556 7776443
No 90
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=76.19 E-value=17 Score=28.55 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=46.1
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
++...++..+.+.+++.|..+.++.... +.+++...+..+|+|||- .|....... . +.+++.....+-.|..+=++
T Consensus 12 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~G-spty~g~~p-~-~~fl~~l~~~~l~gk~v~~f 88 (161)
T 3hly_A 12 GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLG-TPPSQPSEA-V-ATALSTIFAAAHNKQAIGLF 88 (161)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEE-CCBSSCCHH-H-HHHHHHHHHHCCTTSEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEE-cCCcCCchh-H-HHHHHHHHhhhhCCCEEEEE
Confidence 4577888888889999999888887654 344444445678998873 333211111 1 45555554433344334455
Q ss_pred ecc
Q 024713 160 AHC 162 (263)
Q Consensus 160 GIC 162 (263)
|.|
T Consensus 89 gs~ 91 (161)
T 3hly_A 89 DSY 91 (161)
T ss_dssp CCC
T ss_pred EcC
Confidence 543
No 91
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=76.13 E-value=3.2 Score=33.99 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=51.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilpGG~~~~~~ 134 (263)
+|.++|++.-..-..|+.. +.+..+ +.+++++.|+.+..... ..+.+.+. +.++++|-||.+||-+..+.
T Consensus 3 ~~~v~IistGdEll~G~i~-DtN~~~----l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~ 77 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTV-NTNAAF----IGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFD 77 (172)
T ss_dssp -CEEEEEEECHHHHTTSSC-CHHHHH----HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTT
T ss_pred CCEEEEEEEcccccCCcEE-eHHHHH----HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcc
Confidence 4778887643211112211 222333 34589999998765432 33444443 33456899999999774321
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHHHHcC
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTMIISK 174 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~~~GG 174 (263)
+...+.+..+++ +++.+-=--++.|-..+++
T Consensus 78 --D~T~ea~a~~~~-------~~l~~~~e~~~~i~~~~~~ 108 (172)
T 3kbq_A 78 --DMTVEGFAKCIG-------QDLRIDEDALAMIKKKYGQ 108 (172)
T ss_dssp --CCHHHHHHHHHT-------CCCEECHHHHHHHHHHHC-
T ss_pred --cchHHHHHHHcC-------CCeeeCHHHHHHHHHHHcC
Confidence 112344444443 3343333334455555543
No 92
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=75.53 E-value=24 Score=30.40 Aligned_cols=64 Identities=11% Similarity=-0.045 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~ 130 (263)
....||++...... .. ..-+...+.+.+++.|..+.+.....+.+.. +.. -.++||||+.+...
T Consensus 61 ~~~~Igvi~~~~~~-------~~-~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 61 KSRTVLVLIPSLAN-------TV-FLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp --CEEEEEESCSTT-------CT-THHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEEEeCCCCC-------HH-HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 44689998754321 12 2334456778889999998877655443322 221 24699999987543
No 93
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=75.17 E-value=11 Score=30.32 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHH----Hhcc--cCCEEEECCCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLE--LVNGVLYTGGWA 130 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~--~~dGlilpGG~~ 130 (263)
..+|.++|++.-.. .|... +.+..+ +.+.|++.|+++.... ...+.+.+. +.++ .+|-||.+||-.
T Consensus 8 ~~~~~v~Ii~tGdE--~g~i~-D~n~~~----l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 8 FIPTRIAILTVSNR--RGEED-DTSGHY----LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCCEEEEEEECSS--CCGGG-CHHHHH----HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCCEEEEEEEeCC--CCccc-CccHHH----HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 45689999874432 22211 122233 3458899999876433 233444443 3343 389999999977
Q ss_pred C
Q 024713 131 K 131 (263)
Q Consensus 131 ~ 131 (263)
.
T Consensus 81 ~ 81 (172)
T 1mkz_A 81 L 81 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 94
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=75.07 E-value=2.2 Score=34.54 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=38.9
Q ss_pred CCCcEEEEeCCCCCC-----CCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHHHh------cccCCEEEE
Q 024713 58 NYRPVIGIVTHPGDG-----ASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLFEK------LELVNGVLY 125 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~-----~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~~~------l~~~dGlil 125 (263)
..++.+||+|--... ..|.. .+.+..|++ ++|++.|++++.... ..+.+.+.+. .+.+|-||.
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i-~D~ng~~L~----~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPI-VDESGDIIK----QLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCC-CCHHHHHHH----HHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCCCEEEEEEEcCCCccccccCCCC-CcchHHHHH----HHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 356789998743210 01111 122234444 589999998864432 3344444322 235899999
Q ss_pred CCCCCC
Q 024713 126 TGGWAK 131 (263)
Q Consensus 126 pGG~~~ 131 (263)
+||-..
T Consensus 88 tGG~g~ 93 (178)
T 3iwt_A 88 TGGTGY 93 (178)
T ss_dssp ESCCSS
T ss_pred cCCccc
Confidence 999774
No 95
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=74.91 E-value=19 Score=30.05 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~ 133 (263)
....||++....... .. ......-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+.....
T Consensus 7 ~~~~Igvi~~~~~~~--~~-~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~- 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASK--AF-QNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND- 82 (292)
T ss_dssp CCCEEEEECSSCHHH--HT-TSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC-
T ss_pred CCCEEEEEecCCccc--cc-cCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 456899987551000 00 1122334555677888889998877654433222 1111 1469999998764321
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
..++.+.+.+ +|+.-
T Consensus 83 -------~~~~~l~~~~-----iPvV~ 97 (292)
T 3k4h_A 83 -------RIIQYLHEQN-----FPFVL 97 (292)
T ss_dssp -------HHHHHHHHTT-----CCEEE
T ss_pred -------HHHHHHHHCC-----CCEEE
Confidence 2445555566 77753
No 96
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=74.47 E-value=16 Score=30.77 Aligned_cols=83 Identities=14% Similarity=0.044 Sum_probs=49.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC--CChhh----HHHh-cccCCEEEECCCCCCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPEDV----LFEK-LELVNGVLYTGGWAKD 132 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~--~~~~~----l~~~-l~~~dGlilpGG~~~~ 132 (263)
+-.||++..... ......+...+.+.+++.|..+++.... .+.+. ++.. -.++||||+.+....
T Consensus 3 ~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~- 73 (297)
T 3rot_A 3 RDKYYLITHGSQ--------DPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT- 73 (297)
T ss_dssp CCEEEEECSCCC--------SHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS-
T ss_pred eEEEEEEecCCC--------CchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH-
Confidence 567999875532 1223445566778888899998876643 23222 2221 246999999776431
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ....++.+.+.+ +|+.-+
T Consensus 74 -~----~~~~~~~~~~~g-----iPvV~~ 92 (297)
T 3rot_A 74 -A----FSKSLQRANKLN-----IPVIAV 92 (297)
T ss_dssp -T----THHHHHHHHHHT-----CCEEEE
T ss_pred -H----HHHHHHHHHHCC-----CCEEEE
Confidence 1 123556666667 777644
No 97
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=74.30 E-value=20 Score=29.86 Aligned_cols=63 Identities=8% Similarity=-0.029 Sum_probs=36.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
|+.+||++..... .....-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+..
T Consensus 1 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 1 MKGKMAIVISTLN--------NPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp --CEEEEEESCSS--------SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3457999874321 112233455667788889998877665443321 2222 2469999998753
No 98
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=73.33 E-value=3.3 Score=33.76 Aligned_cols=91 Identities=7% Similarity=0.035 Sum_probs=49.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHH-HHHcCCeEEEEecCCC--------------hhhHHHhcccCCEEEEC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKF-VESAGARVIPLIYNEP--------------EDVLFEKLELVNGVLYT 126 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~-le~~G~~~v~i~~~~~--------------~~~l~~~l~~~dGlilp 126 (263)
++.|.+.++. ......++..+.+. +++.|+++..+....- .+.+.+.+..+|+|||.
T Consensus 5 ilii~gS~r~--------~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~ 76 (197)
T 2vzf_A 5 IVAISGSPSR--------NSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVA 76 (197)
T ss_dssp EEEEECCSST--------TCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCC--------CChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEE
Confidence 5566666642 13456677767777 8888988888775421 11223446789999883
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 127 GGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 127 GG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
.|.....+....+.++++.... ....+|+.-++-
T Consensus 77 -sP~y~~~~p~~lK~~ld~l~~~--~~~gK~~~~~~t 110 (197)
T 2vzf_A 77 -TPIYKASYTGLLKAFLDILPQF--ALAGKAALPLAT 110 (197)
T ss_dssp -EECBTTBCCHHHHHHHTTSCTT--TTTTCEEEEEEE
T ss_pred -eCccCCCCCHHHHHHHHhcccc--ccCCCEEEEEEE
Confidence 2222222223344555544211 122378775554
No 99
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=73.19 E-value=5.5 Score=35.12 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=47.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEK 141 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~ 141 (263)
.|||..++.. . +..+.++|++.|.++....... + .++.+|.||.-||-. .
T Consensus 31 ki~iv~~~~~---------~-----~~~l~~~L~~~g~~v~~~~~~~--~----~~~~~DlvIvlGGDG----------T 80 (278)
T 1z0s_A 31 RAAVVYKTDG---------H-----VKRIEEALKRLEVEVELFNQPS--E----ELENFDFIVSVGGDG----------T 80 (278)
T ss_dssp EEEEEESSST---------T-----HHHHHHHHHHTTCEEEEESSCC--G----GGGGSSEEEEEECHH----------H
T ss_pred EEEEEeCCcH---------H-----HHHHHHHHHHCCCEEEEccccc--c----ccCCCCEEEEECCCH----------H
Confidence 4888887642 1 5568889999999886643221 2 246799999999943 2
Q ss_pred HHHHHHHhCCCCCcceEEeccch
Q 024713 142 VFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 142 li~~a~~~~d~g~~~PILGIClG 164 (263)
+++.+.... .. +||+||-.|
T Consensus 81 ~L~aa~~~~--~~-~PilGIN~G 100 (278)
T 1z0s_A 81 ILRILQKLK--RC-PPIFGINTG 100 (278)
T ss_dssp HHHHHTTCS--SC-CCEEEEECS
T ss_pred HHHHHHHhC--CC-CcEEEECCC
Confidence 444443322 22 899999887
No 100
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=72.79 E-value=27 Score=28.67 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=38.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
-+||++..... .....-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+..
T Consensus 3 ~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLE--------NPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTT--------CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCc--------ChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 47888875432 112333455677788889999988776544332 1221 2369999998765
No 101
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=72.53 E-value=14 Score=31.31 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~ 133 (263)
...+||++..... + ....-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+.....+
T Consensus 14 ~s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 85 (303)
T 3kke_A 14 RSGTIGLIVPDVN-------N-AVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD 85 (303)
T ss_dssp ---CEEEEESCTT-------S-TTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH
T ss_pred CCCEEEEEeCCCc-------C-hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH
Confidence 4467999875432 1 22334555677888899999988766544322 1221 24699999988654221
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
+.++.+.+ + +|+.-+-
T Consensus 86 -------~~~~~l~~-~-----iPvV~i~ 101 (303)
T 3kke_A 86 -------DMLAAVLE-G-----VPAVTIN 101 (303)
T ss_dssp -------HHHHHHHT-T-----SCEEEES
T ss_pred -------HHHHHHhC-C-----CCEEEEC
Confidence 14444545 6 8876553
No 102
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=72.45 E-value=7.5 Score=31.13 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=30.9
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCCh----------------hhHHHhcccCCEEEEC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPE----------------DVLFEKLELVNGVLYT 126 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~----------------~~l~~~l~~~dGlilp 126 (263)
.+...++..+.+.+++.|+++..+...... +...+.+..+|+|||-
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 346778888888899889988877654310 0112346789999883
No 103
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=72.00 E-value=24 Score=30.50 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKD 132 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~ 132 (263)
.....||++..... + .....+...+.+.+++.|..+.+.....+.+.. +.. -.++||||+.+... +
T Consensus 66 ~~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~-~ 136 (344)
T 3kjx_A 66 NRVNLVAVIIPSLS-------N-MVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH-S 136 (344)
T ss_dssp SCCSEEEEEESCSS-------S-SSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC-C
T ss_pred CCCCEEEEEeCCCC-------c-HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC-C
Confidence 34568999874422 1 123344556777888889988776655443322 221 23689999987543 1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ..++.+.+.+ +|+.-+
T Consensus 137 ~-------~~~~~l~~~~-----iPvV~i 153 (344)
T 3kjx_A 137 E-------AARAMLDAAG-----IPVVEI 153 (344)
T ss_dssp H-------HHHHHHHHCS-----SCEEEE
T ss_pred H-------HHHHHHHhCC-----CCEEEE
Confidence 1 2344444556 777644
No 104
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=71.17 E-value=35 Score=26.67 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=46.9
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC--ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PI 158 (263)
.+...++..+.+.+++.|..+.++.... +.+++...+..+|+|||- .|.....+. .+.+++.....+-.|..+=+
T Consensus 16 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G-spty~g~~p--~~~~l~~l~~~~~~~k~va~ 92 (159)
T 3fni_A 16 GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG-MSPAASAAS--IQGALSTILGSVNEKQAVGI 92 (159)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE-CCBTTSHHH--HHHHHHHHHHHCCTTSEEEE
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE-cCcCCCCcc--HHHHHHHHHhhcccCCEEEE
Confidence 4467788888889999999888887754 345554456678988773 443222221 14555555444434533445
Q ss_pred Eec
Q 024713 159 YAH 161 (263)
Q Consensus 159 LGI 161 (263)
+|.
T Consensus 93 fgs 95 (159)
T 3fni_A 93 FET 95 (159)
T ss_dssp ECC
T ss_pred EEc
Confidence 553
No 105
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=71.11 E-value=23 Score=29.41 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=37.1
Q ss_pred CCcEEEEeCCC--CCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHP--GDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~--~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
...+||++... .. + ....-+...+.+.+++.|..+++.....+.+. ++..+ .++||||+.+..
T Consensus 18 ~~~~Ig~i~~~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYH-------G-IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC----------CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 44689998743 21 1 12333455677788889998877654433321 22222 469999998754
No 106
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=70.94 E-value=12 Score=30.54 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCCcEEEEeCCCCCCC----C-CCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhhHH----Hhccc--CCEEE
Q 024713 57 LNYRPVIGIVTHPGDGA----S-GRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDVLF----EKLEL--VNGVL 124 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~----~-~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~l~----~~l~~--~dGli 124 (263)
...+|.+||++.-..-. . |.. .+.+..+ +..++++.|++++... ...+.+.+. +.+++ +|-||
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i-~Dsn~~~----L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPI-VDESGDI----IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCC-CCHHHHH----HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCCEEEEEEeCcccccccccCCeE-eehHHHH----HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 45779999987442100 1 111 1122223 3458999999876543 234445443 33444 89999
Q ss_pred ECCCCCCC
Q 024713 125 YTGGWAKD 132 (263)
Q Consensus 125 lpGG~~~~ 132 (263)
.+||-...
T Consensus 87 ttGG~s~g 94 (178)
T 2pjk_A 87 STGGTGYS 94 (178)
T ss_dssp EESCCSSS
T ss_pred ECCCCCCC
Confidence 99997753
No 107
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=70.30 E-value=9.6 Score=31.40 Aligned_cols=84 Identities=10% Similarity=-0.078 Sum_probs=48.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--ChhhHHHhcccCCEEEECCCCCCChhhHH
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYYA 137 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dGlilpGG~~~~~~~~~ 137 (263)
.-+..|.++|..... .+.....+++.+.+.+++.|+++..+.... +.+.+.+.+..+|+|||.= |.....+..
T Consensus 13 ~~iLii~gsP~~~~s----~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~-P~y~~s~pa 87 (204)
T 2amj_A 13 SNILIINGAKKFAHS----NGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQM-PGWWMGAPW 87 (204)
T ss_dssp CEEEEEECCC----------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEE-ECBTTBCCH
T ss_pred cCEEEEEcCCCcccC----cCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEEC-CccccCCCH
Confidence 357788888863210 113344567778888888899998887653 3445556678899999731 111111112
Q ss_pred HHHHHHHHHHH
Q 024713 138 IVEKVFKKILE 148 (263)
Q Consensus 138 ~~~~li~~a~~ 148 (263)
..+.+++++..
T Consensus 88 ~LK~~iDrv~~ 98 (204)
T 2amj_A 88 TVKKYIDDVFT 98 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34566666543
No 108
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=70.21 E-value=18 Score=30.22 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWA 130 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~ 130 (263)
+...+||++..... + ....-+...+.+.+++.|..+++.....+.+.. +.. -.++||||+.+...
T Consensus 6 ~~~~~Igvv~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIE-------N-VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCc-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 34578999875422 1 123334556777888899998887765443322 111 14699999988753
No 109
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=70.09 E-value=25 Score=29.07 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=46.0
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~~~~~~ 134 (263)
|.+||++..... ......+.....+.+++.|..+++.....+.+. ++..+ .++||||+.+... ..
T Consensus 1 ~~~Igvi~~~~~--------~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~ 70 (271)
T 2dri_A 1 KDTIALVVSTLN--------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDS--DA 70 (271)
T ss_dssp CCEEEEEESCSS--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSST--TT
T ss_pred CcEEEEEecCCC--------CHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--HH
Confidence 468999874321 122333555667788889998877654433321 22222 3589999976432 11
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ...++.+.+.+ +|+.-+
T Consensus 71 ~----~~~~~~~~~~~-----iPvV~i 88 (271)
T 2dri_A 71 V----GNAVKMANQAN-----IPVITL 88 (271)
T ss_dssp T----HHHHHHHHHTT-----CCEEEE
T ss_pred H----HHHHHHHHHCC-----CcEEEe
Confidence 1 12445555566 777643
No 110
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=70.05 E-value=14 Score=28.40 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcc--cCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhH
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFE 166 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~--~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~Q 166 (263)
.+.++++..-..+++++-+.. +.+...++ ++-+|||+||-..++ ++++.|.+.+ +||+-+=+..-
T Consensus 43 ~~~~~~~~~~~~l~I~~G~r~-~~~l~a~~~~~~~~iIlt~g~~~~~-------~i~~~A~~~~-----ipvl~t~~~T~ 109 (139)
T 2ioj_A 43 SALRYLREARNAALVTGGDRS-DLLLTALEMPNVRCLILTGNLEPVQ-------LVLTKAEERG-----VPVILTGHDTL 109 (139)
T ss_dssp HHHHHHHTCSSEEEEEETTCH-HHHHHHTTCTTEEEEEEETTCCCCH-------HHHHHHHHHT-----CCEEECSSCHH
T ss_pred HHHHHHhcCCCEEEEEcCCHH-HHHHHHHhCCCCcEEEEcCCCCCCH-------HHHHHHHHCC-----CeEEEECCCHH
Confidence 466667653235666655543 33333343 678999999976433 4667777888 99999887765
Q ss_pred HHHHH
Q 024713 167 LLTMI 171 (263)
Q Consensus 167 lL~~~ 171 (263)
-.+..
T Consensus 110 ~~~~~ 114 (139)
T 2ioj_A 110 TAVSR 114 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 111
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=69.54 E-value=30 Score=29.00 Aligned_cols=83 Identities=7% Similarity=-0.041 Sum_probs=47.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhh----HHHh-cccCCEEEECCCCCCCh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~----l~~~-l~~~dGlilpGG~~~~~ 133 (263)
+..||++...... ...+.+.....+.+++.|..+.++. ...+.+. +... -.++||||+.+....
T Consensus 4 ~~~I~~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-- 73 (305)
T 3g1w_A 4 NETYMMITFQSGM--------DYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-- 73 (305)
T ss_dssp -CEEEEEESSTTS--------THHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT--
T ss_pred CceEEEEEccCCC--------hHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH--
Confidence 4568887754321 2234455567788888999887743 3333322 1211 136999999876431
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. ....++.+.+.+ +|+.-+
T Consensus 74 ~----~~~~~~~~~~~~-----iPvV~~ 92 (305)
T 3g1w_A 74 E----LTDTINKAVDAG-----IPIVLF 92 (305)
T ss_dssp T----THHHHHHHHHTT-----CCEEEE
T ss_pred H----HHHHHHHHHHCC-----CcEEEE
Confidence 1 123556666667 887644
No 112
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=68.99 E-value=20 Score=30.10 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhc--ccCCEEEECCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL--ELVNGVLYTGGW 129 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l--~~~dGlilpGG~ 129 (263)
....+|||+....... + ....-+...+.+.+++.|..+++.....+.+ .+.+.+ .++||||+.+..
T Consensus 6 ~~s~~Igvv~~~~~~~-----~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 6 GKTNVIALVLSVDEEL-----M-GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp -CCCEEEEECBCCCCS-----S-CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCCEEEEEecCCccc-----c-HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 3456899988543210 1 1233344556677788899887765543221 222222 579999998754
No 113
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=68.63 E-value=15 Score=33.98 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=39.5
Q ss_pred CCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEECCCC
Q 024713 57 LNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGW 129 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~-~~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilpGG~ 129 (263)
...||.++|++.-..- ..|. +..++..+-....+...+++.|++++.... ..+.+.+. +.++++|-||.+||-
T Consensus 177 V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~ 256 (402)
T 1uz5_A 177 VFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGA 256 (402)
T ss_dssp EECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred ecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 3478999998633211 0000 111221222222234578899998865432 33444443 334468999999998
Q ss_pred CC
Q 024713 130 AK 131 (263)
Q Consensus 130 ~~ 131 (263)
+.
T Consensus 257 s~ 258 (402)
T 1uz5_A 257 SG 258 (402)
T ss_dssp --
T ss_pred CC
Confidence 75
No 114
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=68.48 E-value=19 Score=31.46 Aligned_cols=82 Identities=9% Similarity=0.058 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~~ 133 (263)
...+||++..... + ....-+...+.+.+++.|..+.+.....+.+.. +.. -.++||||+.+... ..
T Consensus 69 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~-~~ 139 (355)
T 3e3m_A 69 RSGFVGLLLPSLN-------N-LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH-TE 139 (355)
T ss_dssp --CEEEEEESCSB-------C-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC-CH
T ss_pred CCCEEEEEeCCCC-------c-hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC-CH
Confidence 3458999874421 1 112334456677888899998877655443322 111 23699999987543 11
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
..++.+.+.+ +|+.-+
T Consensus 140 -------~~~~~l~~~~-----iPvV~i 155 (355)
T 3e3m_A 140 -------QTIRLLQRAS-----IPIVEI 155 (355)
T ss_dssp -------HHHHHHHHCC-----SCEEEE
T ss_pred -------HHHHHHHhCC-----CCEEEE
Confidence 2445555566 887755
No 115
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=68.30 E-value=24 Score=29.62 Aligned_cols=82 Identities=10% Similarity=-0.036 Sum_probs=48.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~ 134 (263)
+..||++..... ......+.....+.+++.|..++..... +.+. ++.. -.++||||+.+... .
T Consensus 2 ~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~---~ 69 (306)
T 8abp_A 2 NLKLGFLVKQPE--------EPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDP---K 69 (306)
T ss_dssp CEEEEEEESCTT--------SHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCG---G
T ss_pred CeEEEEEeCCCC--------chHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCc---h
Confidence 457999875432 1223445556777888899888776553 3322 2222 24689999987532 1
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.....++.+.+.+ +|+.-+
T Consensus 70 ---~~~~~~~~~~~~~-----iPvV~~ 88 (306)
T 8abp_A 70 ---LGSAIVAKARGYD-----MKVIAV 88 (306)
T ss_dssp ---GHHHHHHHHHHTT-----CEEEEE
T ss_pred ---hhHHHHHHHHHCC-----CcEEEe
Confidence 1234566666677 887643
No 116
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=68.24 E-value=29 Score=29.07 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
..-+||++..... + ....-+...+.+.+++.|..+.+.....+.+. ++..+ .++||||+.+..
T Consensus 15 ~s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 15 KTTTVGVIIPDIS-------S-IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp -CCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCeEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3468999874321 1 12233445567788889998877665444321 22222 469999998753
No 117
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=67.42 E-value=13 Score=34.35 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=41.3
Q ss_pred CCCCcEEEEeCCCCCCC-CCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEECCCC
Q 024713 57 LNYRPVIGIVTHPGDGA-SGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGW 129 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~-~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilpGG~ 129 (263)
...||.|+|++.-..-. .|. +..++..+.....+...+++.|++++.... ..+.+.+. +.++.+|-||.+||-
T Consensus 174 V~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~ 253 (411)
T 1g8l_A 174 VIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV 253 (411)
T ss_dssp EECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSS
T ss_pred ecCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCC
Confidence 34689999986422110 000 111221222222244578999998865432 33444443 334468999999998
Q ss_pred CCC
Q 024713 130 AKD 132 (263)
Q Consensus 130 ~~~ 132 (263)
+..
T Consensus 254 s~g 256 (411)
T 1g8l_A 254 SVG 256 (411)
T ss_dssp CSS
T ss_pred CCC
Confidence 753
No 118
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=65.97 E-value=30 Score=28.96 Aligned_cols=83 Identities=7% Similarity=-0.083 Sum_probs=46.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh-------hHHHhc-ccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED-------VLFEKL-ELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~-------~l~~~l-~~~dGlilpGG~~ 130 (263)
...+||++..... + ....-+...+.+.+++.|..+.+.....+.+ .++..+ .++||||+.+...
T Consensus 7 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 78 (290)
T 2rgy_A 7 QLGIIGLFVPTFF-------G-SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL 78 (290)
T ss_dssp -CCEEEEECSCSC-------S-HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred CCCeEEEEeCCCC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC
Confidence 3468999984321 1 1223344556778888999887665433221 222222 3699999987543
Q ss_pred CChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 131 KDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 131 ~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
+. ..++.+.+.+ +|+.-+.
T Consensus 79 -~~-------~~~~~l~~~~-----iPvV~~~ 97 (290)
T 2rgy_A 79 -HD-------EDLDELHRMH-----PKMVFLN 97 (290)
T ss_dssp -CH-------HHHHHHHHHC-----SSEEEES
T ss_pred -CH-------HHHHHHhhcC-----CCEEEEc
Confidence 11 2344444556 7876543
No 119
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=65.62 E-value=1.6 Score=35.39 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.5
Q ss_pred ccCCEEEECCCCCCC--hhhHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 118 ELVNGVLYTGGWAKD--GLYYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 118 ~~~dGlilpGG~~~~--~~~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
..+|-|||.||-+.. +.-.+..++++++.++.+ ..|.|||.
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~-----~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEG-----GELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEE-----EEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCC-----CCEEEEEh
Confidence 468999999997741 222344568888887656 78999994
No 120
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=65.28 E-value=21 Score=30.21 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKD 132 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~ 132 (263)
....+||++....... .. ......-+...+.+.+++.|..+++.....+.+. +... -.++||||+.+.....
T Consensus 20 ~~~~~Igvi~~~~~~~--~~-~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 96 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPE--IR-QNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD 96 (305)
T ss_dssp -CCCEEEEECSCCSHH--HH-TSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC
T ss_pred CCCCEEEEEeCCCccc--cc-cCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc
Confidence 3456899987541000 00 0112333455667788889998877654433221 1111 2469999998764321
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
..++.+.+.+ +|+.-+
T Consensus 97 --------~~~~~l~~~~-----iPvV~i 112 (305)
T 3huu_A 97 --------PIEHLLNEFK-----VPYLIV 112 (305)
T ss_dssp --------HHHHHHHHTT-----CCEEEE
T ss_pred --------HHHHHHHHcC-----CCEEEE
Confidence 2344455556 777644
No 121
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=64.67 E-value=41 Score=28.79 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
....||++..... + ....-+.....+.+++.|..+++.....+.+. ++..+ .++||||+.+..
T Consensus 62 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 62 RTTTVGVILPTIT-------S-TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp CCCEEEEEESCTT-------C-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred CCCEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4468999874321 1 12233445566778889998877765444321 22222 469999998753
No 122
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=64.64 E-value=18 Score=29.80 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=45.9
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCCCChh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~ 134 (263)
..+||++..... + ....-+.....+.+++.|..+++.....+.+. ++.. -.++||||+.+... ..
T Consensus 3 s~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~- 72 (275)
T 3d8u_A 3 AYSIALIIPSLF-------E-KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEH-SQ- 72 (275)
T ss_dssp -CEEEEEESCSS-------C-HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCC-CH-
T ss_pred ceEEEEEeCCCc-------c-ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CH-
Confidence 357999874321 1 12223445566788889998877655444322 2222 24689999987543 11
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
..++.+.+.+ +|+.-+.
T Consensus 73 ------~~~~~l~~~~-----iPvV~~~ 89 (275)
T 3d8u_A 73 ------RTHQLLEASN-----TPVLEIA 89 (275)
T ss_dssp ------HHHHHHHHHT-----CCEEEES
T ss_pred ------HHHHHHHhCC-----CCEEEEe
Confidence 2344444556 7776543
No 123
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.42 E-value=57 Score=27.92 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=39.2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGW 129 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~ 129 (263)
.....||++...... ......-+.....+.+++.|..+++.....+.+.. +.. -.++||||+.+..
T Consensus 59 ~~~~~Igvi~~~~~~------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLY------HGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -CCSEEEEEECTTTT------STTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCEEEEEecCCcc------cChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 345689998754100 11223345556778888999998877655443321 221 1369999998754
No 124
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=64.34 E-value=40 Score=28.09 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=36.6
Q ss_pred CcEEEEeCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCCh----hhHHHhc-ccCCEEEECCCC
Q 024713 60 RPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPE----DVLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 60 ~PvIGI~~~~-~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~----~~l~~~l-~~~dGlilpGG~ 129 (263)
..+||++... ..+.. + ....-+.....+.+++.|..+++.....+. +.++... .++||||+.+..
T Consensus 4 s~~Ig~i~~~~~~~~~----~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQV----N-HILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCEEEECCCCCCTTCS----C-CTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred eeEEEEEecccccccC----C-hhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 4589998753 20000 1 123334456777888899988765433221 2233222 469999998754
No 125
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=64.29 E-value=34 Score=29.27 Aligned_cols=84 Identities=8% Similarity=-0.018 Sum_probs=48.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-cc--CCEEEECCCCCCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-EL--VNGVLYTGGWAKD 132 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~--~dGlilpGG~~~~ 132 (263)
..+||++..... + ....-+...+.+.+++.|..+++.....+.+. +...+ .+ +||||+.+...
T Consensus 5 s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-- 74 (332)
T 2rjo_A 5 QTTLACSFRSLT-------N-PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS-- 74 (332)
T ss_dssp CCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH--
T ss_pred ccEEEEEecCCC-------c-HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH--
Confidence 458999875321 1 12233445567788889998887765444321 22222 36 99999976532
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
. .....++.+.+.+ +|+.-+.
T Consensus 75 -~---~~~~~~~~~~~~~-----iPvV~~~ 95 (332)
T 2rjo_A 75 -A---DARVIVEACSKAG-----AYVTTIW 95 (332)
T ss_dssp -H---HHHHHHHHHHHHT-----CEEEEES
T ss_pred -H---HHHHHHHHHHHCC-----CeEEEEC
Confidence 1 1224556666667 8876554
No 126
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=63.97 E-value=19 Score=29.76 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCCCCCCh
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGGWAKDG 133 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG~~~~~ 133 (263)
....||++..... .....-+...+.+.+++.|..+++.....+.+.. +.. -.++||||+.+. ++
T Consensus 7 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~---~~ 75 (277)
T 3e61_A 7 KSKLIGLLLPDMS--------NPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF---NE 75 (277)
T ss_dssp ---CEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG---GH
T ss_pred CCCEEEEEECCCC--------CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC---Ch
Confidence 3457999875421 1123334556777888899998887765543321 111 246999999872 11
Q ss_pred hhHHHHHHHHH-HHHHhCCCCCcceEEecc
Q 024713 134 LYYAIVEKVFK-KILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 134 ~~~~~~~~li~-~a~~~~d~g~~~PILGIC 162 (263)
..++ .+.+.+ +|+.-+-
T Consensus 76 -------~~~~~~l~~~~-----iPvV~~~ 93 (277)
T 3e61_A 76 -------NIIENTLTDHH-----IPFVFID 93 (277)
T ss_dssp -------HHHHHHHHHC------CCEEEGG
T ss_pred -------HHHHHHHHcCC-----CCEEEEe
Confidence 2355 565667 8887653
No 127
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=63.78 E-value=40 Score=28.06 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG 128 (263)
...+||++..... + ....-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 7 KTGMLLVMVSNIA-------N-PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCCEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCEEEEEeCCCC-------C-chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4468999874321 1 12233445667788889998877765444322 1221 246999999875
No 128
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=63.33 E-value=4.2 Score=33.14 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHH---HcCCeEEEEecCCChhhHH----Hhcc--cCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVE---SAGARVIPLIYNEPEDVLF----EKLE--LVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le---~~G~~~v~i~~~~~~~~l~----~~l~--~~dGlilpGG~ 129 (263)
.+|.++|++.-..-..|... +.+..++. ++++ +.|+++.......+.+.+. +.++ ++|-||.+||-
T Consensus 4 ~~~rv~IistGdE~~~G~i~-Dsn~~~l~----~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYE-DISGKAII----DYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSC-CHHHHHHH----HHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEeCCcCCCCCee-cchHHHHH----HHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 56889998743211112211 22233333 4566 7898873333334444443 3344 68999999997
Q ss_pred CC
Q 024713 130 AK 131 (263)
Q Consensus 130 ~~ 131 (263)
..
T Consensus 79 g~ 80 (178)
T 2pbq_A 79 GP 80 (178)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 129
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=63.09 E-value=12 Score=34.66 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=40.8
Q ss_pred CCCCcEEEEeCCCCCC-CCCC-CCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhhHH----HhcccCCEEEECCCC
Q 024713 57 LNYRPVIGIVTHPGDG-ASGR-LNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDVLF----EKLELVNGVLYTGGW 129 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~-~~~~-~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~l~----~~l~~~dGlilpGG~ 129 (263)
...||.++|++.-..- ..|. +..++...-....+...+++.|++++.... ..+.+.+. +.++++|-||.+||-
T Consensus 178 V~~~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~ 257 (419)
T 2fts_A 178 VNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGV 257 (419)
T ss_dssp EECCCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCC
T ss_pred ecCCCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 4568999998632110 0000 011221111222234578999998865432 33444443 334468999999998
Q ss_pred CCC
Q 024713 130 AKD 132 (263)
Q Consensus 130 ~~~ 132 (263)
+..
T Consensus 258 s~g 260 (419)
T 2fts_A 258 SMG 260 (419)
T ss_dssp SSS
T ss_pred cCC
Confidence 753
No 130
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=63.01 E-value=31 Score=29.47 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEecCCChhh----HHHhc-ccCCEEEECCCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-GARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKD 132 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~~~~ 132 (263)
...+||++... .. .....+...+.+.+++. |..+++.....+.+. +...+ .++||||+.+...
T Consensus 5 ~~~~Igvi~~~-~~--------~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-- 73 (325)
T 2x7x_A 5 PHFRIGVAQCS-DD--------SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA-- 73 (325)
T ss_dssp -CCEEEEEESC-CS--------HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH--
T ss_pred CCeEEEEEecC-CC--------HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH--
Confidence 44689998743 11 11223444556667777 888877665443322 22222 4699999986532
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 133 GLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 133 ~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
. .....++.+.+.+ +|+.-+
T Consensus 74 -~---~~~~~~~~~~~~~-----iPvV~~ 93 (325)
T 2x7x_A 74 -A---PMTPIVEEAYQKG-----IPVILV 93 (325)
T ss_dssp -H---HHHHHHHHHHHTT-----CCEEEE
T ss_pred -H---HHHHHHHHHHHCC-----CeEEEe
Confidence 1 1123455555566 776543
No 131
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=63.00 E-value=7.8 Score=31.93 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=38.4
Q ss_pred CCCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHH---cCCeEEEEe-cCCChhhHH----Hhcc--cCCEEEE
Q 024713 56 KLNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVES---AGARVIPLI-YNEPEDVLF----EKLE--LVNGVLY 125 (263)
Q Consensus 56 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~---~G~~~v~i~-~~~~~~~l~----~~l~--~~dGlil 125 (263)
....+|.++|++.-..-..|.. .+.+..++ ..+|++ .|+.++... ...+.+.+. +.++ ++|-||.
T Consensus 10 ~v~~~~rv~IistGdEl~~g~~-~D~n~~~L----~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLA-EDRSGINL----KDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSS-CCHHHHHH----HHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred cccCCCEEEEEEECCccCCCcc-cchHHHHH----HHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 3457799999875422111111 12222333 357777 798776433 233444443 3333 6899999
Q ss_pred CCCCCC
Q 024713 126 TGGWAK 131 (263)
Q Consensus 126 pGG~~~ 131 (263)
+||-..
T Consensus 85 tGGtg~ 90 (189)
T 1jlj_A 85 TGGTGF 90 (189)
T ss_dssp ESCCSS
T ss_pred cCCCCC
Confidence 999875
No 132
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=62.70 E-value=19 Score=32.37 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=45.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhc-ccCCEEEECCCCCCChhhH
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKL-ELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l-~~~dGlilpGG~~~~~~~~ 136 (263)
....+|||+. +.. .....-+...+.+.+++.|..+.+...+...+.+.... .++||||+.. . +
T Consensus 23 ~~s~~Igvv~-~~~--------~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~--~-~---- 86 (412)
T 4fe7_A 23 TKRHRITLLF-NAN--------KAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF--D-D---- 86 (412)
T ss_dssp CCCEEEEEEC-CTT--------SHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET--T-C----
T ss_pred CCCceEEEEe-CCc--------chhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec--C-C----
Confidence 4457899998 321 12233355567778888999887776443333333322 3699999932 1 1
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 137 AIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 137 ~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
..+++.+.+.+ +|+.-+.
T Consensus 87 ---~~~~~~l~~~~-----iPvV~i~ 104 (412)
T 4fe7_A 87 ---KQIEQALADVD-----VPIVGVG 104 (412)
T ss_dssp ---HHHHHHHTTCC-----SCEEEEE
T ss_pred ---hHHHHHHhhCC-----CCEEEec
Confidence 13455555556 8887554
No 133
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=62.10 E-value=12 Score=30.74 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHH----HHHHc--CCeEEEEecCCC----------------hhhHH
Q 024713 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVK----FVESA--GARVIPLIYNEP----------------EDVLF 114 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~----~le~~--G~~~v~i~~~~~----------------~~~l~ 114 (263)
..+|-|++|.+.++.+ ....-++..+.+ .+++. |+++..+....- .+.+.
T Consensus 9 ~~~~~il~i~GS~r~~--------S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~ 80 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTP--------SSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEIT 80 (191)
T ss_dssp CCSEEEEEEECCCSSS--------CHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHH
T ss_pred hhhceEEEEECCCCCC--------CHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHH
Confidence 3578899999999753 234445555666 55555 677777754321 11233
Q ss_pred HhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccch
Q 024713 115 EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLG 164 (263)
Q Consensus 115 ~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG 164 (263)
+.+..+|+|||. -|.....+....+.+++++....-+| ||+.-++-|
T Consensus 81 ~~i~~AD~ivi~-sP~Y~~~~~~~lK~~iD~~~~~~l~g--K~~~~v~t~ 127 (191)
T 3k1y_A 81 SALSASDGLVVA-TPVFKASYTGLFKMFFDILDTDALTG--MPTIIAATA 127 (191)
T ss_dssp HHHHHCSEEEEE-EECBTTBSCHHHHHHHHHSCTTTTTT--CEEEEEEEE
T ss_pred HHHHHCCEEEEE-cCccCCcCcHHHHHHHHHhhhhhcCC--CEEEEEEeC
Confidence 456678888873 12211222234455666553211122 777655543
No 134
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=61.81 E-value=56 Score=27.46 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=45.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCCCCChhh
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~~~~~~~ 135 (263)
.+||++..... .....-+.....+.+++.|..+++.....+.+. ++..+ .++||||+.+..... .
T Consensus 3 ~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--~ 72 (306)
T 2vk2_A 3 LTVGFSQVGSE--------SGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG--W 72 (306)
T ss_dssp CEEEEEECCCC--------SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS--C
T ss_pred eEEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh--H
Confidence 47898875421 112223444566778889998877654433322 22222 469999998754311 0
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 136 YAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 136 ~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
...++.+.+.+ +|+.-+
T Consensus 73 ----~~~~~~~~~~~-----iPvV~~ 89 (306)
T 2vk2_A 73 ----EPVLKEAKDAE-----IPVFLL 89 (306)
T ss_dssp ----HHHHHHHHHTT-----CCEEEE
T ss_pred ----HHHHHHHHHCC-----CCEEEe
Confidence 12444554556 776543
No 135
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=61.75 E-value=18 Score=30.54 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=52.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--ChhhHHHhcccCCEEEECCCCCCChhhH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~l~~~l~~~dGlilpGG~~~~~~~~ 136 (263)
|+-++.|.++|..... .+....-++..+.+.+++.|.++..+.... +.+...+.+..+|+|||. -|.....+.
T Consensus 25 M~kiLiI~gsp~~~~s----~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~-~P~y~~~~p 99 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHS----KGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ-MPAWWMGEP 99 (218)
T ss_dssp CCCEEEEECCCCBTTB----CSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE-EECBTTBCC
T ss_pred CcceEEEEeCCCcccC----CChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE-CChHhccCC
Confidence 5568888999863110 112234455667788888899998887653 334445567889999984 222111122
Q ss_pred HHHHHHHHHHHHhC
Q 024713 137 AIVEKVFKKILEKN 150 (263)
Q Consensus 137 ~~~~~li~~a~~~~ 150 (263)
...+.+++++...+
T Consensus 100 ~~lK~~iD~v~~~g 113 (218)
T 3rpe_A 100 WILKKYIDEVFTDG 113 (218)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC
Confidence 23566777766554
No 136
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=61.37 E-value=51 Score=27.33 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=44.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCCCCChhh
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGWAKDGLY 135 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~~~~~~~ 135 (263)
-+||++..... + .....+...+.+.+++.|..+++.....+.+. ++..+ .++||||+.+... ...
T Consensus 2 ~~Igvi~~~~~-------~-~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~ 71 (283)
T 2ioy_A 2 KTIGLVISTLN-------N-PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDS--DAV 71 (283)
T ss_dssp CEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSST--TTT
T ss_pred eEEEEEecCCC-------C-HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCch--hhh
Confidence 46888864321 1 12333455566778888998877654433321 22222 3699999976422 111
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 136 YAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 136 ~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
...++.+.+.+ +|+.-+
T Consensus 72 ----~~~~~~~~~~~-----iPvV~~ 88 (283)
T 2ioy_A 72 ----VTAIKEANSKN-----IPVITI 88 (283)
T ss_dssp ----HHHHHHHHHTT-----CCEEEE
T ss_pred ----HHHHHHHHHCC-----CeEEEe
Confidence 12345555566 776543
No 137
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=60.88 E-value=8.9 Score=29.35 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCCcceEEeccchhHH
Q 024713 140 EKVFKKILEKNDAGDHFPLYAHCLGFEL 167 (263)
Q Consensus 140 ~~li~~a~~~~d~g~~~PILGIClG~Ql 167 (263)
+++.+.+.+.+ +.++|=|+|+++
T Consensus 95 ~e~~~~a~~~G-----irvv~nC~gv~l 117 (122)
T 3ff4_A 95 EELEEILSENG-----IEPVIGCTLVML 117 (122)
T ss_dssp HHHHHHHHHTT-----CEEEESCHHHHH
T ss_pred HHHHHHHHHcC-----CeEECCcCeEEe
Confidence 36777777777 888888888764
No 138
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=60.87 E-value=42 Score=27.98 Aligned_cols=84 Identities=12% Similarity=-0.020 Sum_probs=47.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC-eEEEEecCCChhh----HHHh-cccCCEEEECCCCCCChh
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA-RVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~-~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~~~~~ 134 (263)
.+||++..... ......+.....+.+++.|. .+++.....+.+. ++.. -.++||||+.+... .
T Consensus 3 ~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~---~ 71 (309)
T 2fvy_A 3 TRIGVTIYKYD--------DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP---A 71 (309)
T ss_dssp EEEEEEESCTT--------SHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG---G
T ss_pred cEEEEEeccCC--------cHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc---c
Confidence 47898874321 11223345556778888897 7776654433321 2222 24699999976532 1
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEeccc
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAHCL 163 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGICl 163 (263)
. ....++.+.+.+ +|+.-+..
T Consensus 72 ~---~~~~~~~~~~~~-----iPvV~~~~ 92 (309)
T 2fvy_A 72 A---AGTVIEKARGQN-----VPVVFFNK 92 (309)
T ss_dssp G---HHHHHHHHHTTT-----CCEEEESS
T ss_pred h---hHHHHHHHHHCC-----CcEEEecC
Confidence 1 124556665666 89876544
No 139
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=60.77 E-value=37 Score=28.32 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
...+||++..... + ....-+...+.+.+++.|..+.+.....+.+. ++..+ .++||||+.+..
T Consensus 19 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 19 RTRSIGLVIPDLE-------N-TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCEEEEEESCSC-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCcEEEEEeCCCc-------C-cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4568999874321 1 12233445566778889998877665443322 22222 469999998764
No 140
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=58.73 E-value=91 Score=27.03 Aligned_cols=74 Identities=9% Similarity=-0.036 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHcC-CeEEEEecCC---ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 84 SYIAASYVKFVESAG-ARVIPLIYNE---PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 84 s~i~~s~v~~le~~G-~~~v~i~~~~---~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
......+.+.|++.| +.|.+..... +.+.+.+.|+++|.||+.-.+.. +.....+-++..++.+ .+++
T Consensus 19 ~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~---l~~~~~~~l~~yV~~G-----gglv 90 (281)
T 4e5v_A 19 QVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDS---WPEETNRRFLEYVQNG-----GGVV 90 (281)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSC---CCHHHHHHHHHHHHTT-----CEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCc---CCHHHHHHHHHHHHcC-----CCEE
Confidence 334445677888888 7776654210 11222234788999998553332 2222334444455678 9999
Q ss_pred eccchh
Q 024713 160 AHCLGF 165 (263)
Q Consensus 160 GIClG~ 165 (263)
|+.-+.
T Consensus 91 ~~H~a~ 96 (281)
T 4e5v_A 91 IYHAAD 96 (281)
T ss_dssp EEGGGG
T ss_pred EEeccc
Confidence 987654
No 141
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=58.44 E-value=9.2 Score=30.74 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC---------------hhhHHHhcccCCEEEEC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP---------------EDVLFEKLELVNGVLYT 126 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~---------------~~~l~~~l~~~dGlilp 126 (263)
++.|...+.. +.....++..+.+.++ .|+++.++....- .+.+.+.+..+|+|||.
T Consensus 9 ilii~gS~r~--------~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~ 79 (193)
T 1rtt_A 9 VLGISGSLRS--------GSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFA 79 (193)
T ss_dssp EEEEESCCST--------TCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCC--------CChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEE
Confidence 5667777752 1234445554444455 5778877765320 12233456789999983
Q ss_pred CCCCCChhhHHHHHHHHHHHHHh---CCCCCcceEEeccc
Q 024713 127 GGWAKDGLYYAIVEKVFKKILEK---NDAGDHFPLYAHCL 163 (263)
Q Consensus 127 GG~~~~~~~~~~~~~li~~a~~~---~d~g~~~PILGICl 163 (263)
-|.....+....+.++++.... .-+| +|+.-+|-
T Consensus 80 -sP~y~~~~p~~lK~~iD~~~~~~~~~l~g--K~~~~~~t 116 (193)
T 1rtt_A 80 -TPEYNYSMAGVLKNAIDWASRPPEQPFSG--KPAAILGA 116 (193)
T ss_dssp -CCEETTEECHHHHHHHHHHTCSSSCTTTT--CEEEEEEE
T ss_pred -ccccccCcCHHHHHHHHHhccccCcccCC--CeEEEEEe
Confidence 3322222233456677766421 1123 67665543
No 142
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=58.23 E-value=44 Score=27.78 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=48.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCC--Chhh----HHHh-cccCCEEEECCCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNE--PEDV----LFEK-LELVNGVLYTGGWAK 131 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~--~~~~----l~~~-l~~~dGlilpGG~~~ 131 (263)
..-.||++..... .....-+...+.+.+++.|..+++..... +.+. ++.. -.++||||+.+....
T Consensus 4 ~~~~Igvi~~~~~--------~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLK--------DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSC--------SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCC--------CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3457999875421 12233455567778888999988877654 3222 1111 236999999876431
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 132 DGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 132 ~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.. ...++.+. .+ +|+.-+
T Consensus 76 --~~----~~~~~~~~-~~-----iPvV~~ 93 (304)
T 3o1i_D 76 --AY----EHNLKSWV-GN-----TPVFAT 93 (304)
T ss_dssp --SS----TTTHHHHT-TT-----SCEEEC
T ss_pred --HH----HHHHHHHc-CC-----CCEEEe
Confidence 00 12345554 56 898766
No 143
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=58.15 E-value=29 Score=29.19 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG 128 (263)
....+||++...... .....-+...+.+.+++.|..+++.....+.+.. +.. -.++||||+.+.
T Consensus 11 ~~s~~Igvi~~~~~~-------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 11 SRSNTFGIITDYVST-------TPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -CCCEEEEEESSTTT-------CCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEEeCCCcC-------cccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 345689998755321 1222144556788899999999887765443322 111 236999999764
No 144
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=57.33 E-value=4 Score=32.85 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHH----HHHcCCeEEEEe-cCCChhhHH----Hhcc-cCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKF----VESAGARVIPLI-YNEPEDVLF----EKLE-LVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~----le~~G~~~v~i~-~~~~~~~l~----~~l~-~~dGlilpGG 128 (263)
+.|.++|++--..-..|+.. +.+..++. ++ +++.|+++.... ...+.+.+. +.++ .+|-||.+||
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~-D~n~~~l~----~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRE-NKALPLLQ----RLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSC-CCHHHHHH----HHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CccEEEEEEECCcccCCcee-ccHHHHHH----HhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 66888888744221112221 23334443 46 888998775432 233444443 3344 4899999999
Q ss_pred CCC
Q 024713 129 WAK 131 (263)
Q Consensus 129 ~~~ 131 (263)
-..
T Consensus 79 ~g~ 81 (167)
T 2g2c_A 79 TGI 81 (167)
T ss_dssp CSS
T ss_pred CCC
Confidence 774
No 145
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=57.01 E-value=49 Score=30.35 Aligned_cols=79 Identities=5% Similarity=0.140 Sum_probs=46.5
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEec-C---CChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIY-N---EPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF 156 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~-~---~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~ 156 (263)
+++..++..+.+.+++.|..++++.. + .+.+++.+.+.+++||+| |.|.....++.....++......+.+++..
T Consensus 277 GnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-GspT~~~~~~p~~~~~l~~l~~~~~~~K~~ 355 (410)
T 4dik_A 277 GFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVSTYEAEIHPLMRFTLLEIIDKANYEKPV 355 (410)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EECCTTSSSCHHHHHHHHHHHHHCCCCCEE
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeCCcCCcCCHHHHHHHHHHHhcccCCCEE
Confidence 34667788888899999998876543 2 233455555778999998 333322222223344555555555455444
Q ss_pred eEEe
Q 024713 157 PLYA 160 (263)
Q Consensus 157 PILG 160 (263)
=++|
T Consensus 356 ~~FG 359 (410)
T 4dik_A 356 LVFG 359 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4555
No 146
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=56.76 E-value=16 Score=31.56 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHh--CCCCCcceEEeccc
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK--NDAGDHFPLYAHCL 163 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~--~d~g~~~PILGICl 163 (263)
+...+.+++++.|.++. .+.+|.||.-||-. . .....+.+... + +|++||=.
T Consensus 16 ~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGDG---T----~l~aa~~~~~~~~~-----~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGDG---T----FLSAFHQYEERLDE-----IAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESHH---H----HHHHHHHTGGGTTT-----CEEEEEES
T ss_pred HHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCcH---H----HHHHHHHHhhcCCC-----CCEEEEeC
Confidence 44567788998998651 23689999999933 2 22333333333 5 99999977
Q ss_pred hh
Q 024713 164 GF 165 (263)
Q Consensus 164 G~ 165 (263)
|.
T Consensus 70 G~ 71 (272)
T 2i2c_A 70 GH 71 (272)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 147
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=56.36 E-value=34 Score=29.74 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=35.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
...||++..... + ....-+...+.+.+++.|..+++.....+.+. +...+ .++||||+.+..
T Consensus 66 s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 66 SNTIGVIVPSLI-------N-HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp --CEEEEESCSS-------S-HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 357999874321 1 12233445566778889998887765444322 22222 469999998753
No 148
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=56.27 E-value=25 Score=30.03 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=53.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC------------hhhHHHhcccCCEEEECCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP------------EDVLFEKLELVNGVLYTGG 128 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~------------~~~l~~~l~~~dGlilpGG 128 (263)
-|++|.+.+..+ .....++..+.+.+++.|+++.++....- ...+.+.+..+|+|||. -
T Consensus 36 kIliI~GS~r~~--------s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~-s 106 (247)
T 2q62_A 36 RILILYGSLRTV--------SYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV-S 106 (247)
T ss_dssp EEEEEECCCCSS--------CHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE-E
T ss_pred eEEEEEccCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE-e
Confidence 477888887531 23455666677888888998888765431 23344567789999983 2
Q ss_pred CCCChhhHHHHHHHHHHHHHhC---CCCCcceEEeccc
Q 024713 129 WAKDGLYYAIVEKVFKKILEKN---DAGDHFPLYAHCL 163 (263)
Q Consensus 129 ~~~~~~~~~~~~~li~~a~~~~---d~g~~~PILGICl 163 (263)
|.....+....+.+++++.... ..-..||+.-|+-
T Consensus 107 P~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 107 PERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp ECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred CCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 3222223334556666653210 1112377765554
No 149
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=56.13 E-value=59 Score=27.15 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--hhhHHHhc--ccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--EDVLFEKL--ELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--~~~l~~~l--~~~dGlilpGG~~ 130 (263)
...+||++....... +.+ ....-+...+.+.+++.|..+++...+.. ...+.+.+ .++||||+.+...
T Consensus 5 ~s~~Igvi~~~~~~~---~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 5 RTDAIALAYPSRPRV---LNN-STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp CCCEEEEEEESCSGG---GSC-HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred ccceEEEEecCCCcc---ccC-hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 446899987532100 011 12233445667788889998887765421 12222222 3699999988754
No 150
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=55.53 E-value=56 Score=27.81 Aligned_cols=84 Identities=5% Similarity=-0.053 Sum_probs=47.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-ecCCChh----hHHHhc-ccCCEEEECCCCCCCh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGWAKDG 133 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i-~~~~~~~----~l~~~l-~~~dGlilpGG~~~~~ 133 (263)
...||++..... ......+.....+.+++.|..+.+. +...+.+ .++..+ +++||||+.+... .
T Consensus 3 ~~~Igvi~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~--~ 72 (316)
T 1tjy_A 3 AERIAFIPKLVG--------VGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP--D 72 (316)
T ss_dssp CCEEEEECSSSS--------SHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS--S
T ss_pred CCEEEEEeCCCC--------ChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH--H
Confidence 357999874321 1123334556677888899887765 2333322 122222 4699999976532 1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
. ....++.+.+.+ +|+.-+-
T Consensus 73 ~----~~~~~~~a~~~g-----ipvV~~d 92 (316)
T 1tjy_A 73 G----LCPALKRAMQRG-----VKILTWD 92 (316)
T ss_dssp T----THHHHHHHHHTT-----CEEEEES
T ss_pred H----HHHHHHHHHHCc-----CEEEEec
Confidence 1 123566666677 8876543
No 151
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=55.51 E-value=15 Score=29.31 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=38.3
Q ss_pred CchhhhHHHHHHHHHH-cCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHH
Q 024713 81 TNASYIAASYVKFVES-AGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~-~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~ 147 (263)
.+...++..+.+.+++ .|+++.++...... .. .+..+|+|||- .|.....+....+.++++..
T Consensus 16 GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~--~~-~l~~aD~ii~g-sP~y~g~~~~~lk~fld~~~ 79 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLEGTEVRLKHVDEAT--KE-DVLWADGLAVG-SPTNMGLVSWKMKRFFDDVL 79 (188)
T ss_dssp SHHHHHHHHHHHHHHTSTTEEEEEEETTTCC--HH-HHHHCSEEEEE-EECBTTBCCHHHHHHHHHTG
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC--HH-HHHhCCEEEEE-eCccCCcCCHHHHHHHHHHh
Confidence 3467788888888888 88888887765321 22 25678999883 33322222233456666653
No 152
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=55.17 E-value=89 Score=26.24 Aligned_cols=81 Identities=20% Similarity=0.130 Sum_probs=44.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec-CCChhh----HHHh-cccCCEEEECCCCCCChh
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY-NEPEDV----LFEK-LELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~-~~~~~~----l~~~-l~~~dGlilpGG~~~~~~ 134 (263)
..||++..... + ....+.....+++++.|..++.... ..+.+. ++.. -+++||||+.+... ..
T Consensus 2 ~~Ig~i~~~~~-------~--~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~ 70 (313)
T 2h3h_A 2 LTIGVIGKSVH-------P--YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP--TA 70 (313)
T ss_dssp CEEEEECSCSS-------H--HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST--TT
T ss_pred eEEEEEeCCCc-------H--HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--HH
Confidence 57888874321 1 2233445566778888998876532 223221 2222 24699999976543 11
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
....++.+.+.+ +|+.-+
T Consensus 71 ----~~~~~~~~~~~~-----iPvV~~ 88 (313)
T 2h3h_A 71 ----VIPTIKKALEMG-----IPVVTL 88 (313)
T ss_dssp ----THHHHHHHHHTT-----CCEEEE
T ss_pred ----HHHHHHHHHHCC-----CeEEEe
Confidence 113455555666 887654
No 153
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=54.77 E-value=62 Score=26.66 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
...+||++..... + ....-+...+.+.+++.|..+.+.....+.+. ++..+ .++||||+.+..
T Consensus 6 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 6 HTKSIGLLATSSE-------A-AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp --CEEEEEESCTT-------S-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3458999874321 1 11223445566778889998877665444332 22222 469999997754
No 154
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=54.64 E-value=41 Score=24.72 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=30.5
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhcccCCEEEEC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLELVNGVLYT 126 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~~~dGlilp 126 (263)
.+...++..+.+.+++.|.++.++..... .+ .+..+|+|||-
T Consensus 11 GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~----~l~~~d~vi~g 53 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGADVESVRFEDTNVD----DVASKDVILLG 53 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHH----HHHTCSEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHH----HHhcCCEEEEE
Confidence 45677888888889888998888876542 22 25678998874
No 155
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=54.34 E-value=5.9 Score=36.58 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIP 103 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~--G~~~v~ 103 (263)
.|+|..++.. .........+.++|++. |..+.+
T Consensus 43 ~V~II~n~~~---------~~~~~~~~~l~~~L~~~~~gi~V~v 77 (388)
T 3afo_A 43 NVYITKKPWT---------PSTREAMVEFITHLHESYPEVNVIV 77 (388)
T ss_dssp EEEEEECTTC---------HHHHHHHHHHHHHHHHHCTTCEEEC
T ss_pred EEEEEEeCCC---------HHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 5999998863 22344556788999988 766543
No 156
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=53.97 E-value=35 Score=28.66 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~~ 130 (263)
...+|||+....... ...+ ....-+.....+.+++.|..+++.....+.+. ++.. -.++||||+.+...
T Consensus 6 ~s~~Igvi~~~~~~~--~~~~-~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEP--IRLN-PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CSCEEEEECSCCCHH--HHSC-HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred CCcEEEEEeecCCcc--cccC-hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 456899987431100 0001 12233445567788888998876654432221 1111 24699999987543
No 157
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=53.93 E-value=30 Score=28.91 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEE-ecCCChh----hHHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPL-IYNEPED----VLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i-~~~~~~~----~l~~~l-~~~dGlilpGG~ 129 (263)
...+||++..... .....-+...+.+.+++.|..+++. ....+.+ .++..+ .++||||+.+..
T Consensus 7 ~~~~Ig~i~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 7 SSNVIAAVVSSVR--------TNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp -CCEEEEECCCCS--------SSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred cCCEEEEEeCCCC--------ChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4468999985321 1223334556677888899888776 4322211 222222 469999997754
No 158
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=53.81 E-value=42 Score=28.68 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED----VLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~l-~~~dGlilpGG~ 129 (263)
....||++..... + ....-+...+.+.+++.|..+.+.....+.+ .++..+ .++||||+.+..
T Consensus 59 ~~~~Ig~i~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 59 KTTTVGVIIPDIS-------N-IFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp -CCEEEEEEC--C-------C-SHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4468999875321 1 2233344566778888999887765443322 122222 468999998754
No 159
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=53.53 E-value=79 Score=26.25 Aligned_cols=82 Identities=9% Similarity=-0.067 Sum_probs=44.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe--cCCChhh----HHHhc-ccCCEEEECCCCCCCh
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~--~~~~~~~----l~~~l-~~~dGlilpGG~~~~~ 133 (263)
.+||++..... + ....-+.....+.+++.|..+.+.. ...+.+. ++..+ .++||||+.+... .
T Consensus 2 ~~Igvi~~~~~-------~-~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~ 71 (288)
T 1gud_A 2 AEYAVVLKTLS-------N-PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS--V 71 (288)
T ss_dssp CEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSS--S
T ss_pred cEEEEEeCCCC-------c-hHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--H
Confidence 46888764321 1 1233344566677888999887765 3333221 22222 3589999976532 1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.. ...++.+.+.+ +|+.-+
T Consensus 72 ~~----~~~~~~~~~~~-----iPvV~~ 90 (288)
T 1gud_A 72 NL----VMPVARAWKKG-----IYLVNL 90 (288)
T ss_dssp TT----HHHHHHHHHTT-----CEEEEE
T ss_pred HH----HHHHHHHHHCC-----CeEEEE
Confidence 11 12345555566 887644
No 160
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=53.49 E-value=81 Score=27.64 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=50.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh--hH-HHh-cccCCEEEECCCCCCChhhH
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--VL-FEK-LELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~--~l-~~~-l~~~dGlilpGG~~~~~~~~ 136 (263)
..++|..+|..+. ....-+...+.++|++.|..+.+.......+ .+ .+. .+.+|.||.-||-.
T Consensus 25 ~~i~vI~NP~sg~-------~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG------ 91 (337)
T 2qv7_A 25 KRARIIYNPTSGK-------EQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG------ 91 (337)
T ss_dssp EEEEEEECTTSTT-------SCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH------
T ss_pred ceEEEEECCCCCC-------CchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch------
Confidence 4588888886532 1122233567889999998777665433211 11 111 24579999999832
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 137 ~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+..++++.+.+. +...|+.+|=.|-
T Consensus 92 -Tv~~v~~~l~~~---~~~~pl~iIP~GT 116 (337)
T 2qv7_A 92 -TLNEVVNGIAEK---PNRPKLGVIPMGT 116 (337)
T ss_dssp -HHHHHHHHHTTC---SSCCEEEEEECSS
T ss_pred -HHHHHHHHHHhC---CCCCcEEEecCCc
Confidence 233455555221 1228988776663
No 161
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=53.26 E-value=58 Score=28.60 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=49.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh--hH-HH-hcccCCEEEECCCCCCChhhH
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--VL-FE-KLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~--~l-~~-~l~~~dGlilpGG~~~~~~~~ 136 (263)
..++|..+|..+. . . ......+++++.|..+.+.......+ .+ .+ ..+.+|.||.-||-.
T Consensus 30 ~~~~vi~Np~sg~--------~-~-~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG------ 93 (332)
T 2bon_A 30 PASLLILNGKSTD--------N-L-PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG------ 93 (332)
T ss_dssp CCEEEEECSSSTT--------C-H-HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH------
T ss_pred ceEEEEECCCCCC--------C-c-hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch------
Confidence 3478888886431 1 2 23457889999998877665432211 11 11 124589999999832
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 137 AIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 137 ~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
+..++++.+.+.. .+...|+..|=.|-
T Consensus 94 -Tl~~v~~~l~~~~-~~~~~plgiiP~Gt 120 (332)
T 2bon_A 94 -TINEVSTALIQCE-GDDIPALGILPLGT 120 (332)
T ss_dssp -HHHHHHHHHHHCC-SSCCCEEEEEECSS
T ss_pred -HHHHHHHHHhhcc-cCCCCeEEEecCcC
Confidence 3345666655321 12238877664554
No 162
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=51.99 E-value=15 Score=29.29 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc-----CCeEEEEe-cCCChhhHH----Hhc--ccCCEEEEC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA-----GARVIPLI-YNEPEDVLF----EKL--ELVNGVLYT 126 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~-----G~~~v~i~-~~~~~~~l~----~~l--~~~dGlilp 126 (263)
.+|.++|++.-..-..|+. .+.+..++. +.+++. |++++... ...+.+.+. +.+ +++|-||.+
T Consensus 4 ~~~rv~IistGde~~~G~~-~d~n~~~l~----~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAG-PDRSGPRAV----SVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp CSEEEEEEEECHHHHTTSS-CCSHHHHHH----HHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCcEEEEEEECCcccCCCC-ccCcHHHHH----HHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5688999873211111111 112233444 355655 88775433 233444443 333 368999999
Q ss_pred CCCCC
Q 024713 127 GGWAK 131 (263)
Q Consensus 127 GG~~~ 131 (263)
||-..
T Consensus 79 GG~g~ 83 (167)
T 1uuy_A 79 GGTGF 83 (167)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 99875
No 163
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=51.94 E-value=13 Score=29.75 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=30.2
Q ss_pred chhhhHHHHHHHHHHcCCeEEEEecCCC------------------hhhHHHhcccCCEEEE
Q 024713 82 NASYIAASYVKFVESAGARVIPLIYNEP------------------EDVLFEKLELVNGVLY 125 (263)
Q Consensus 82 ~~s~i~~s~v~~le~~G~~~v~i~~~~~------------------~~~l~~~l~~~dGlil 125 (263)
....++..+.+.+++.|+++..+..... .+.. +.+..+|+|||
T Consensus 16 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~-~~l~~aD~ii~ 76 (199)
T 2zki_A 16 SIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTL-DDMRWADGFAI 76 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccH-HHHHhCCEEEE
Confidence 4677888888889889998888765432 1112 23667999988
No 164
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.08 E-value=20 Score=29.94 Aligned_cols=64 Identities=8% Similarity=-0.063 Sum_probs=35.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh----hHHHh-cccCCEEEECCC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED----VLFEK-LELVNGVLYTGG 128 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~----~l~~~-l~~~dGlilpGG 128 (263)
.....|||+..... ......-+...+.+.+++.|..+.+.....+.+ .++.. -.++||||+.+.
T Consensus 9 ~~~~~Igvi~~~~~-------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 9 QSKPTIALYWSSDI-------SVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp --CCEEEEEEETTS-------CGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCCceEEEEecccc-------chHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 45578999875211 012233344567778888898876654322111 11111 235899999875
No 165
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=50.86 E-value=41 Score=28.73 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhH-HHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh-
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVL-FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF- 165 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l-~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~- 165 (263)
.-+.+.|+..|..|..+..+.....+ .+.++++|.||+-|-.. ...+.....+-++..++.+ .+++||=-|.
T Consensus 35 ~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~-~~~l~~~~~~al~~~V~~G-----gG~vgiH~a~~ 108 (252)
T 1t0b_A 35 TVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIA-HDEVKDEVVERVHRRVLEG-----MGLIVLHSGHF 108 (252)
T ss_dssp HHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSC-GGGSCHHHHHHHHHHHHTT-----CEEEEEGGGGG
T ss_pred HHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCC-CCcCCHHHHHHHHHHHHcC-----CCEEEEcccCC
Confidence 34567888899988876543322211 23478899999943111 0112222334455555778 9999985543
Q ss_pred -HHHHHHHcCc
Q 024713 166 -ELLTMIISKD 175 (263)
Q Consensus 166 -QlL~~~~GG~ 175 (263)
+.....+||.
T Consensus 109 ~~~y~~llGg~ 119 (252)
T 1t0b_A 109 SKIFKKLMGTT 119 (252)
T ss_dssp SHHHHHHHCSC
T ss_pred cHHHHhhhCCc
Confidence 4445556765
No 166
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=50.77 E-value=13 Score=34.36 Aligned_cols=42 Identities=24% Similarity=0.114 Sum_probs=23.9
Q ss_pred HHHHHHHcCCeEEEEec-CCChhhH----HHhcccCCEEEECCCCCC
Q 024713 90 YVKFVESAGARVIPLIY-NEPEDVL----FEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~-~~~~~~l----~~~l~~~dGlilpGG~~~ 131 (263)
+...+++.|++++.... ..+.+.+ .+.++++|-||.+||-+.
T Consensus 216 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~ 262 (396)
T 1wu2_A 216 LQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAF 262 (396)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC-----
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 34578999998865432 2344443 334556899999999764
No 167
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=50.69 E-value=35 Score=28.27 Aligned_cols=64 Identities=8% Similarity=-0.069 Sum_probs=36.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC--CChh----hHHHhc-ccCCEEEECCCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN--EPED----VLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~--~~~~----~l~~~l-~~~dGlilpGG~ 129 (263)
..+||++...... ......-+.....+.+++.|..+++...+ .+.+ .++..+ .++||||+.+..
T Consensus 5 ~~~Ig~v~~~~~~------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 5 QYYMICIPKVLDD------SSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp CCEEEEECSCCCS------SSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CcEEEEEeCCCCC------CchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4579998753210 01122334455677888889988776542 2322 122222 469999998754
No 168
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=50.58 E-value=93 Score=26.51 Aligned_cols=69 Identities=7% Similarity=0.001 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 85 YIAASYVKFVESAGARVIPLIYNEPED---VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 85 ~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
.....+.+..+..|.+++........+ .+.....+.|.++++... ......+.+...+.+.+ +|++|.
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~----~~~~~~~~i~~~~~~~~-----iPv~~~ 226 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDN----TVASAIEGMIVAANQAK-----TPVFGA 226 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCH----HHHHTHHHHHHHHHHTT-----CCEEES
T ss_pred HHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCc----chhhHHHHHHHHHhhcC-----Cceeec
Confidence 344445667788899888776654322 123345678999887532 22333345666666777 999985
Q ss_pred c
Q 024713 162 C 162 (263)
Q Consensus 162 C 162 (263)
-
T Consensus 227 ~ 227 (302)
T 3lkv_A 227 A 227 (302)
T ss_dssp S
T ss_pred c
Confidence 3
No 169
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=49.29 E-value=99 Score=25.56 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=46.2
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe-cCCChhh----HHHhc-ccCCEEEECCCCCCCh
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLI-YNEPEDV----LFEKL-ELVNGVLYTGGWAKDG 133 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~-~~~~~~~----l~~~l-~~~dGlilpGG~~~~~ 133 (263)
...||++..... ....+-+.....+++++.|..++.+. ...+.+. ++..+ +++||||+.+.. .
T Consensus 4 ~~~Ig~i~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~---~ 72 (303)
T 3d02_A 4 EKTVVNISKVDG--------MPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPND---A 72 (303)
T ss_dssp CEEEEEECSCSS--------CHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSC---H
T ss_pred ceEEEEEeccCC--------ChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCC---h
Confidence 457999874321 11223345566778888898876543 2223221 22222 468999997652 1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 134 LYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 134 ~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
. .....++.+.+.+ +|+.-+.
T Consensus 73 ~---~~~~~~~~~~~~~-----ipvV~~~ 93 (303)
T 3d02_A 73 N---VLEPVFKKARDAG-----IVVLTNE 93 (303)
T ss_dssp H---HHHHHHHHHHHTT-----CEEEEES
T ss_pred H---HHHHHHHHHHHCC-----CeEEEEe
Confidence 1 1223456665666 8876544
No 170
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=48.59 E-value=20 Score=32.08 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=33.3
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
||+.+||+. |.+-.....+++.++..+ .-|+||..|++=|..
T Consensus 5 gIltsGG~~--pG~Na~ir~vv~~a~~~g-----~~v~Gi~~G~~Gl~~ 46 (319)
T 4a3s_A 5 GVLTSGGDS--PGMNAAVRAVVRKAIYHD-----VEVYGIYNGYAGLIS 46 (319)
T ss_dssp EEEEESSCC--TTHHHHHHHHHHHHHHTT-----CEEEEECSTTHHHHH
T ss_pred EEECcCCCc--HHHHHHHHHHHHHHHHCC-----CEEEEEecchHHHcC
Confidence 788888876 666556678888888777 679999999987754
No 171
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=48.43 E-value=31 Score=27.80 Aligned_cols=28 Identities=25% Similarity=0.132 Sum_probs=22.0
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE 108 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~ 108 (263)
.....++..+.+.+++.|+++.++....
T Consensus 18 g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 18 GTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 3467788888889998999988887654
No 172
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=48.11 E-value=83 Score=23.44 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=38.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHH-HHHHHHHcCCeEEE-------EecCCChhhHHHhcccCCEEEECCCCCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAAS-YVKFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWAKD 132 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s-~v~~le~~G~~~v~-------i~~~~~~~~l~~~l~~~dGlilpGG~~~~ 132 (263)
.+++|+..|.. --..|+++. +.++-++.|..+.+ +....+.++ ++.+|+||+-+.-.++
T Consensus 4 kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~v~ 70 (106)
T 2r48_A 4 KLLAITSCPNG---------IAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEE----IREADAIIIAADRSVN 70 (106)
T ss_dssp EEEEEEECSSC---------SHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESSCCC
T ss_pred eEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCccC
Confidence 57899998853 346787665 44566778987655 222223333 5679999999886543
No 173
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=47.44 E-value=61 Score=28.93 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=45.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCC-CCCcceE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKND-AGDHFPL 158 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d-~g~~~PI 158 (263)
.+...++..+.+.+++.|+++.++.... +...+.+.+..+|+|||-- |.....+....+.++++.....- +| +|+
T Consensus 268 GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigs-P~y~~~~~~~~k~fld~l~~~~~~~~--K~~ 344 (414)
T 2q9u_A 268 GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFAS-PTLNNTMMPSVAAALNYVRGLTLIKG--KPA 344 (414)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEEC-CCBTTBCCHHHHHHHHHHHHHTTTTT--SBE
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEc-CccCcCchHHHHHHHHHHHhhcccCC--CEE
Confidence 3467788888888988898888877543 2333334577899998853 22111222234566666543222 23 665
Q ss_pred Eecc
Q 024713 159 YAHC 162 (263)
Q Consensus 159 LGIC 162 (263)
.-+|
T Consensus 345 ~~~~ 348 (414)
T 2q9u_A 345 FAFG 348 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5333
No 174
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=47.09 E-value=1.1e+02 Score=25.97 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
...+||++..... + ....-+...+.+.+++.|..+.+.....+.+. ++..+ .++||||+.+..
T Consensus 57 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 57 HTKSIGLLATSSE-------A-AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CCSEEEEEESCSC-------S-HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEEeCCCC-------C-hHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 3468999874321 1 12233445566778888998877655444332 22222 369999998754
No 175
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=46.94 E-value=78 Score=23.61 Aligned_cols=60 Identities=8% Similarity=0.173 Sum_probs=38.3
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHH-HHHHHHHcCCeEEE-------EecCCChhhHHHhcccCCEEEECCCCCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAAS-YVKFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWAK 131 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s-~v~~le~~G~~~v~-------i~~~~~~~~l~~~l~~~dGlilpGG~~~ 131 (263)
+.+++|+..|.. --..|+++. +.++-++.|..+.+ +....+.++ ++.+|+||+-+.-.+
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~v 69 (106)
T 2r4q_A 3 AKILAVTACPTG---------IAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQE----IEDAPAIIVAADKQV 69 (106)
T ss_dssp CCEEEEEECSCC-----------CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHH----HHHCSCEEEEESSCC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCcc
Confidence 357899998853 235777665 44566778987655 222223333 567899999988654
Q ss_pred C
Q 024713 132 D 132 (263)
Q Consensus 132 ~ 132 (263)
+
T Consensus 70 ~ 70 (106)
T 2r4q_A 70 E 70 (106)
T ss_dssp C
T ss_pred C
Confidence 3
No 176
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=46.45 E-value=40 Score=28.17 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh---hHHHhc-ccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED---VLFEKL-ELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~---~l~~~l-~~~dGlilpGG~~ 130 (263)
...+||++. ... + ....-+...+.+.+++.|..+++.....+.+ .+...+ .++||||+.+...
T Consensus 11 ~~~~Igvi~-~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 11 SSRLLGVVF-ELQ-------Q-PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp --CEEEEEE-ETT-------C-HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCC
T ss_pred CCCEEEEEE-ecC-------C-chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 456899998 321 1 1233345567788888999888776544322 222222 4689999987644
No 177
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=46.11 E-value=41 Score=29.34 Aligned_cols=78 Identities=8% Similarity=0.056 Sum_probs=46.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-------------hhhHHHhcccCCEEEECC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-------------EDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-------------~~~l~~~l~~~dGlilpG 127 (263)
-|++|.+.+.. +.....++..+.+.+++.|+++.++....- ...+.+.+..+|||||.
T Consensus 60 KILiI~GS~R~--------~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a- 130 (279)
T 2fzv_A 60 RILLLYGSLRA--------RSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC- 130 (279)
T ss_dssp EEEEEESCCSS--------SCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE-
T ss_pred EEEEEEeCCCC--------CCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE-
Confidence 36677777753 133455666677888888999888765321 12344567789999983
Q ss_pred CCCCChhhHHHHHHHHHHHH
Q 024713 128 GWAKDGLYYAIVEKVFKKIL 147 (263)
Q Consensus 128 G~~~~~~~~~~~~~li~~a~ 147 (263)
-|.....+....+.+++++.
T Consensus 131 SP~Yn~sipg~LKn~IDrl~ 150 (279)
T 2fzv_A 131 SPERHGQITSVMKAQIDHLP 150 (279)
T ss_dssp EEEETTEECHHHHHHHHHSC
T ss_pred cCccccCcCHHHHHHHHHHh
Confidence 22212222334566777663
No 178
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=45.42 E-value=66 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=27.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEec
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~--G~~~v~i~~ 106 (263)
-++.|.++|... +.....++..+++.+++. |+++..+..
T Consensus 3 kiLii~gSpr~~-------~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 3 RILAVHASPRGE-------RSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CEEEEECCSCST-------TCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred EEEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 467788888631 133556777788888887 888887765
No 179
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=45.31 E-value=54 Score=27.12 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCe-EEEEecCCChhh----HHHh-cccCCEEEECC
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGAR-VIPLIYNEPEDV----LFEK-LELVNGVLYTG 127 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~-~v~i~~~~~~~~----l~~~-l~~~dGlilpG 127 (263)
....+||++..... .....-+...+.+.+++.|.. +.+.....+.+. ++.. -.++||||+.+
T Consensus 8 ~~~~~Igvi~~~~~--------~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLN--------NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTT--------SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCC--------ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 34578999875422 112333455677788889998 666655444322 2221 24699999987
No 180
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=45.20 E-value=33 Score=28.08 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=44.9
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC-------CChhhHHHhcccCCEEEECCCCCCCh
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN-------EPEDVLFEKLELVNGVLYTGGWAKDG 133 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~-------~~~~~l~~~l~~~dGlilpGG~~~~~ 133 (263)
-++.|.++|... .+-+.+.+.+.+++.|.++..+... .+.+...+.+..+|+|||. -|....
T Consensus 3 kiLiI~gsp~~~----------~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~-~P~y~~ 71 (192)
T 3f2v_A 3 KTLIILAHPNIS----------QSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ-FPIYWF 71 (192)
T ss_dssp CEEEEECCTTGG----------GCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE-EECBTT
T ss_pred EEEEEEeCCCcc----------HHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE-cChhhc
Confidence 467788888531 2345666788888889888877542 2333444567889999874 222111
Q ss_pred hhHHHHHHHHHHHH
Q 024713 134 LYYAIVEKVFKKIL 147 (263)
Q Consensus 134 ~~~~~~~~li~~a~ 147 (263)
.+....+.+++++.
T Consensus 72 ~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 72 NCPPLLKQWLDEVL 85 (192)
T ss_dssp BCCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHh
Confidence 11223456666654
No 181
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=44.93 E-value=46 Score=27.78 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=28.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~ 107 (263)
++.|.++|.. +....-++..+++.+++.|.++.++...
T Consensus 4 iLiI~gspr~--------~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 4 VLIVYAHQEP--------KSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp EEEEECCSCT--------TSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred EEEEEeCCCC--------CCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 6788888863 2335667778888999899999888753
No 182
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=43.79 E-value=54 Score=29.05 Aligned_cols=80 Identities=9% Similarity=-0.038 Sum_probs=46.1
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCC---CCCcc
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKND---AGDHF 156 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d---~g~~~ 156 (263)
.+...++..+.+.+++.|+++.++.... +.+.+...+..+|+|||.-- .....+....+.++++...... +| +
T Consensus 268 gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP-~y~~~~~~~~k~~ld~l~~~~~~~l~~--k 344 (404)
T 2ohh_A 268 GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAP-TIYDEPYPSVGDLLMYLRGLKFNRTLT--R 344 (404)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECC-EETTEECTHHHHHHHHHHHHCGGGTCC--E
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECc-cccccchHHHHHHHHHhhhccccccCC--C
Confidence 3467788888888888898888877643 23334445778999988532 1111111234556665543221 22 7
Q ss_pred eEEeccc
Q 024713 157 PLYAHCL 163 (263)
Q Consensus 157 PILGICl 163 (263)
|+.-+|-
T Consensus 345 ~~~~~~~ 351 (404)
T 2ohh_A 345 KALVFGS 351 (404)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7765543
No 183
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=43.71 E-value=1.5e+02 Score=25.09 Aligned_cols=63 Identities=14% Similarity=-0.042 Sum_probs=35.9
Q ss_pred CCCcEEEEeCCC-CCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEe--cC--CChh----hHHHhc-ccCCEEEECC
Q 024713 58 NYRPVIGIVTHP-GDGASGRLNNATNASYIAASYVKFVESAGARVIPLI--YN--EPED----VLFEKL-ELVNGVLYTG 127 (263)
Q Consensus 58 ~~~PvIGI~~~~-~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~--~~--~~~~----~l~~~l-~~~dGlilpG 127 (263)
....+||++... .. + ....-+...+.+.+++.|..+.+.. .+ .+.+ .+...+ .++||||+++
T Consensus 41 ~~~~~Igvi~~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 41 QRPIKISVVYPGQQV-------S-DYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp SSCEEEEEEECCCSS-------C-CHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCceEEEEEecCCcc-------c-HHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 445789998753 21 1 1233345567778888998776652 22 2322 122222 3699999954
Q ss_pred C
Q 024713 128 G 128 (263)
Q Consensus 128 G 128 (263)
.
T Consensus 113 ~ 113 (342)
T 1jx6_A 113 D 113 (342)
T ss_dssp S
T ss_pred C
Confidence 3
No 184
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=42.16 E-value=51 Score=28.01 Aligned_cols=67 Identities=6% Similarity=0.014 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCeEEEEecC----CChhhHHHhcccCCEEEECCCCCC--C--hhhH------HHHHHHHHHHHHhCCCCC
Q 024713 89 SYVKFVESAGARVIPLIYN----EPEDVLFEKLELVNGVLYTGGWAK--D--GLYY------AIVEKVFKKILEKNDAGD 154 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~----~~~~~l~~~l~~~dGlilpGG~~~--~--~~~~------~~~~~li~~a~~~~d~g~ 154 (263)
.+.++|+..|..++.++.. .-++.+ +.++.+|.|||.+.+.. . +..+ ....+.++..++.+
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~-~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~G---- 118 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESI-DELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNG---- 118 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSH-HHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTT----
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcCh-hHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhC----
Confidence 3556898899998887432 111111 23678999999986641 1 1111 12235666666767
Q ss_pred cceEEec
Q 024713 155 HFPLYAH 161 (263)
Q Consensus 155 ~~PILGI 161 (263)
..+++|
T Consensus 119 -Ggll~i 124 (256)
T 2gk3_A 119 -GGLLMI 124 (256)
T ss_dssp -CEEEEE
T ss_pred -CEEEEE
Confidence 889988
No 185
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.42 E-value=19 Score=27.16 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCC-ChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 87 AASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAK-DGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~-~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
...++..+...|....- +.++.+|++|+.-|... ...+ ...-++.|.+.+ +||+||
T Consensus 17 ~~~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t~~s~w---v~~EI~~A~~~g-----kpIigV 73 (111)
T 1eiw_A 17 YRVFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWGTRRDE---ILGAVDLARKSS-----KPIITV 73 (111)
T ss_dssp HHHHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTTTSHHH---HHHHHHHHTTTT-----CCEEEE
T ss_pred HHHHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCcCCChH---HHHHHHHHHHcC-----CCEEEE
Confidence 44566666655665543 23788999998777542 2222 334457777788 999998
No 186
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=41.08 E-value=34 Score=30.59 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=31.9
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
||+-+||+. |.+-.....+++.++..+ .-|+||-.|++=|.
T Consensus 6 ~IltsGGda--pGmNaair~vv~~a~~~g-----~~v~Gi~~G~~GL~ 46 (320)
T 1pfk_A 6 GVLTSGGDA--PGMNAAIRGVVRSALTEG-----LEVMGIYDGYLGLY 46 (320)
T ss_dssp EEEECSSCC--TTHHHHHHHHHHHHHHTT-----CEEEEESTHHHHHH
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEecChHHhc
Confidence 566777766 666666678888888776 78999999998774
No 187
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=40.95 E-value=1.1e+02 Score=25.38 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHH-HHHHHcCCeEEEEecCCChhhHHHhc--ccCCEEEECCCCCCChh
Q 024713 58 NYRPVIGIVTHPGDGASGRLNNATNASYIAASYV-KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGL 134 (263)
Q Consensus 58 ~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v-~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dGlilpGG~~~~~~ 134 (263)
..+|.|-+.+.+++. .-+-..++ ..|+..|++++-+..+.+.+++.+.. .++|.|.++|.....+
T Consensus 90 ~~~~~vll~~v~gd~-----------HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~- 157 (215)
T 3ezx_A 90 EEAGLAITFVAEGDI-----------HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTT- 157 (215)
T ss_dssp --CCEEEEEECTTCC-----------CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHH-
T ss_pred CCCCeEEEEeCCCCh-----------hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccC-
Confidence 356777666666542 12233333 37899999999888877877764322 2589999955544322
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEE--eccchhHHHHHHHcCc
Q 024713 135 YYAIVEKVFKKILEKNDAGDHFPLY--AHCLGFELLTMIISKD 175 (263)
Q Consensus 135 ~~~~~~~li~~a~~~~d~g~~~PIL--GIClG~QlL~~~~GG~ 175 (263)
.....+++++.+.+.+-. +.+||+ |-..- |-++...|.+
T Consensus 158 ~~~~~~~~i~~l~~~~~~-~~v~v~vGG~~~~-~~~a~~iGad 198 (215)
T 3ezx_A 158 SMLGQKDLMDRLNEEKLR-DSVKCMFGGAPVS-DKWIEEIGAD 198 (215)
T ss_dssp HHTHHHHHHHHHHHTTCG-GGSEEEEESSSCC-HHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHcCCC-CCCEEEEECCCCC-HHHHHHhCCe
Confidence 223345667766554311 136654 43333 3344445543
No 188
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.06 E-value=1.1e+02 Score=25.19 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCC-CCCCCCCCCCCchhhhHHHHHHHHHHc-CCeEEEEec--C-CChhh----HHHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPG-DGASGRLNNATNASYIAASYVKFVESA-GARVIPLIY--N-EPEDV----LFEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~-~~~~~~~~~~~~~s~i~~s~v~~le~~-G~~~v~i~~--~-~~~~~----l~~~-l~~~dGlilpGG 128 (263)
..-.||++.... .. .....+...+.+.+++. |..+.+... + .+.+. ++.. -.++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~--------~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 7 KKYTFACLLPKHLEG--------EYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CCEEEEEEEECCCTT--------SHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CcceEEEEecCCCCc--------hHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 446899887543 21 22344555677788887 777766542 1 22221 2222 246999999876
Q ss_pred CCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 129 WAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 129 ~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.. +. ....++.+.+.+ +|+.-+.
T Consensus 79 ~~--~~----~~~~~~~~~~~~-----iPvV~~~ 101 (304)
T 3gbv_A 79 VP--QY----TKGFTDALNELG-----IPYIYID 101 (304)
T ss_dssp SG--GG----THHHHHHHHHHT-----CCEEEES
T ss_pred Ch--HH----HHHHHHHHHHCC-----CeEEEEe
Confidence 42 11 124556666667 8876544
No 189
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=39.38 E-value=1.7e+02 Score=24.47 Aligned_cols=66 Identities=6% Similarity=-0.018 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCh---hhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEec
Q 024713 87 AASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAH 161 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGI 161 (263)
...|.+++++.|..+......... +.+..+++.+|+|+.+.... ..+..+.+.+...+.+ +||.|.
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~~D~~----a~g~~~~l~~~~~~~~-----i~vig~ 226 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT----VASAIEGMIVAANQAK-----TPVFGA 226 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGGGCSEEEECSCHH----HHTTHHHHHHHHHHTT-----CCEEES
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhccCCEEEECCcHh----HHHHHHHHHHHHHHcC-----CCEEEC
Confidence 356888999999887665443221 22334456789998864321 1222334555555556 999985
No 190
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=39.21 E-value=78 Score=24.83 Aligned_cols=39 Identities=3% Similarity=-0.024 Sum_probs=26.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC--CeEEEEecC
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYN 107 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G--~~~v~i~~~ 107 (263)
++.|.++|.. .+.....++..+.+.+++.| +++..+...
T Consensus 4 ilii~~S~~~-------~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 4 VLVLKSSILA-------GYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp EEEEECCSSG-------GGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred EEEEEeCCCC-------CCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 5667777752 01345667777888888876 788777654
No 191
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=39.14 E-value=81 Score=25.47 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCCC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG~ 129 (263)
.+||++..... + ....-+...+.+.+++.|..+.+.....+.+. ++... .++||||+.+..
T Consensus 3 ~~Igvi~~~~~-------~-~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (255)
T 1byk_A 3 KVVAIIVTRLD-------S-LSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT 68 (255)
T ss_dssp CEEEEEESCTT-------C-HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CEEEEEeCCCC-------C-ccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 47898874321 1 12223445567788889998877765433322 22222 469999998753
No 192
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=38.94 E-value=35 Score=30.54 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=32.2
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLTM 170 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~~ 170 (263)
||+-+||+. |.+-.....+++.++..+ .-|+||-.|++=|..
T Consensus 5 ~IltsGGda--pGmNaair~vv~~a~~~g-----~~v~Gi~~G~~GL~~ 46 (319)
T 1zxx_A 5 GILTSGGDA--PGMNAAVRAVTRVAIANG-----LEVFGIRYGFAGLVA 46 (319)
T ss_dssp EEEECSSCC--TTHHHHHHHHHHHHHTTT-----CEEEEECTHHHHHHH
T ss_pred EEEccCCCc--hhHHHHHHHHHHHHHHCC-----CEEEEEccChHHHcC
Confidence 566777766 666666678888887766 789999999997753
No 193
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=38.66 E-value=1.4e+02 Score=23.34 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcc--cCCEEEECCCCCCChhhH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~--~~dGlilpGG~~~~~~~~ 136 (263)
.+|.|-+.+.+++.- .-+..+++ ..|+..|++++.+..+.+.+++.+.+. ++|.|.++.-.. .+.
T Consensus 17 ~~~~vlla~~~gd~H------diG~~~va----~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~---~~~ 83 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGH------DRGAKVVA----RALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG---AHL 83 (161)
T ss_dssp CSCEEEEEEESSSSC------CHHHHHHH----HHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS---CHH
T ss_pred CCCEEEEEeCCCCcc------HHHHHHHH----HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech---hhH
Confidence 567766666554311 11222332 378999999998877777776654333 589999887533 233
Q ss_pred HHHHHHHHHHHHhC
Q 024713 137 AIVEKVFKKILEKN 150 (263)
Q Consensus 137 ~~~~~li~~a~~~~ 150 (263)
...+++++.+.+.+
T Consensus 84 ~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 84 HLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 44556777766543
No 194
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=37.30 E-value=55 Score=26.28 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=44.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC--------------hhhHHHhcccCCEEEE
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP--------------EDVLFEKLELVNGVLY 125 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~--------------~~~l~~~l~~~dGlil 125 (263)
+-++.|.++|+.+ .....+++.+.+.++ .|+++..+....- ...+.+.+..+|+|||
T Consensus 3 ~kilii~gS~r~~--------s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~ 73 (192)
T 3fvw_A 3 KRILFIVGSFSEG--------SFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWI 73 (192)
T ss_dssp CEEEEEESCCSTT--------CHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEEcCCCCC--------CHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEE
Confidence 4477888888631 233445555666665 5777777654311 1234456778999987
Q ss_pred CCCCCCChhhHHHHHHHHHHHH
Q 024713 126 TGGWAKDGLYYAIVEKVFKKIL 147 (263)
Q Consensus 126 pGG~~~~~~~~~~~~~li~~a~ 147 (263)
. -|.....+....+.+++++.
T Consensus 74 ~-sP~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 74 F-SPVYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp E-CCCBTTBCCHHHHHHHHHHT
T ss_pred E-CcccccCCCHHHHHHHHHhh
Confidence 4 22211222234566777765
No 195
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=36.82 E-value=32 Score=27.23 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=48.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc------CCeEEEEecCC------------------------C--
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA------GARVIPLIYNE------------------------P-- 109 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~------G~~~v~i~~~~------------------------~-- 109 (263)
++.|.+++.. +.....++..+.+.+++. |+++..+.... +
T Consensus 3 ilii~gS~r~--------~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (191)
T 1t0i_A 3 VGIIMGSVRA--------KRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSK 74 (191)
T ss_dssp EEEEECCCCS--------SCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHH
T ss_pred EEEEeCCCCC--------CCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHH
Confidence 4566666652 134566677777788776 67777765321 0
Q ss_pred hhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchh
Q 024713 110 EDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGF 165 (263)
Q Consensus 110 ~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~ 165 (263)
.+.+.+.+..+|+|||. -|.....+....+.++++... .-+| +|++-++.|-
T Consensus 75 ~~~~~~~l~~aD~iI~~-sP~y~~~~p~~lK~~iD~~~~-~l~g--K~~~~~~~G~ 126 (191)
T 1t0i_A 75 TRSWSRIVNALDIIVFV-TPQYNWGYPAALKNAIDRLYH-EWHG--KPALVVSYGG 126 (191)
T ss_dssp HHHHHHHHHTCSEEEEE-EECBTTBCCHHHHHHHHTCST-TTTT--CEEEEEEEET
T ss_pred HHHHHHHHHhCCEEEEE-eceECCCCCHHHHHHHHHHHh-hcCC--CEEEEEEeCC
Confidence 01234457789999883 222111222234455555421 0112 7777665554
No 196
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=35.86 E-value=37 Score=26.88 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=27.2
Q ss_pred HHHHHHcCCeEEEEe-cCCChhhHH----Hhcc--cCCEEEECCCCCCC
Q 024713 91 VKFVESAGARVIPLI-YNEPEDVLF----EKLE--LVNGVLYTGGWAKD 132 (263)
Q Consensus 91 v~~le~~G~~~v~i~-~~~~~~~l~----~~l~--~~dGlilpGG~~~~ 132 (263)
.++|++.|+++.... ...+.+.+. +.++ ++|-||.+||-...
T Consensus 27 ~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 27 REVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp HHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 357889998776432 233444443 3344 68999999998753
No 197
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=34.90 E-value=2.2e+02 Score=24.43 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=51.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChh--h-HHHhcccCCEEEECCCCCCChhhHHH
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPED--V-LFEKLELVNGVLYTGGWAKDGLYYAI 138 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~--~-l~~~l~~~dGlilpGG~~~~~~~~~~ 138 (263)
.+.|..+|..+. +..... ...+.++|++.|..+.+.......+ + ..+..+.+|.||.-||-. +
T Consensus 10 ~~~vi~Np~sG~------~~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG-------T 75 (304)
T 3s40_A 10 KVLLIVNPKAGQ------GDLHTN-LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG-------T 75 (304)
T ss_dssp SEEEEECTTCSS------SCHHHH-HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH-------H
T ss_pred EEEEEECcccCC------CchHHH-HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch-------H
Confidence 356666775432 111223 3457789999998877665433211 1 122234689999999832 2
Q ss_pred HHHHHHHHHH--hCCCCCcceEEeccchhH-HHHHHHc
Q 024713 139 VEKVFKKILE--KNDAGDHFPLYAHCLGFE-LLTMIIS 173 (263)
Q Consensus 139 ~~~li~~a~~--~~d~g~~~PILGIClG~Q-lL~~~~G 173 (263)
..++++.+.+ .+ .|+..|=.|-- -++..+|
T Consensus 76 l~~v~~~l~~~~~~-----~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 76 VFECTNGLAPLEIR-----PTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HHHHHHHHTTCSSC-----CEEEEEECSSCCHHHHHTT
T ss_pred HHHHHHHHhhCCCC-----CcEEEecCCcHHHHHHHcC
Confidence 3355555544 33 77776555543 3444444
No 198
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=34.78 E-value=9.8 Score=23.60 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=11.9
Q ss_pred EEeccchhHHHHHHH
Q 024713 158 LYAHCLGFELLTMII 172 (263)
Q Consensus 158 ILGIClG~QlL~~~~ 172 (263)
.-|-|.|.|+|..+-
T Consensus 32 tagacfgaqimvaak 46 (48)
T 1ehs_A 32 TAGACFGAQIMVAAK 46 (48)
T ss_dssp SCCTTTTTHHHHTTT
T ss_pred ccccccchhHhhhcc
Confidence 568899999997653
No 199
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=33.79 E-value=87 Score=27.20 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=27.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEec
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIY 106 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~ 106 (263)
|.-|.++|... ....-++..+++.+++.|.+|.++..
T Consensus 25 iLII~aHP~~~--------S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 25 VLLIYAHPEPR--------SLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred EEEEEeCCCCc--------cHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 66778898531 22345677889999999999988764
No 200
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=33.52 E-value=1.2e+02 Score=25.85 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=27.8
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYN 107 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~ 107 (263)
-++.|.++|.. +.....++..+++.+++.|.++..+...
T Consensus 4 kiLiI~gSpr~--------~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 4 RALIVLAHSER--------TSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp EEEEEECCSCT--------TSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEEEeCCCC--------ccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 36778888853 1335567777888888889988887654
No 201
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=32.64 E-value=90 Score=24.85 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=28.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcC--CeEEEEecC
Q 024713 61 PVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAG--ARVIPLIYN 107 (263)
Q Consensus 61 PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G--~~~v~i~~~ 107 (263)
-++.|.++|... .+.....+++.+.+.+++.| +++..+...
T Consensus 3 kilii~gS~r~~------~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 3 KLLVVKAHPLTK------EESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp EEEEEECCSSCT------TTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred eEEEEEecCCCC------CCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 366778887621 12345667777888999887 888887654
No 202
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=29.80 E-value=76 Score=26.07 Aligned_cols=42 Identities=5% Similarity=0.037 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCeEEEEecCC-----ChhhHHHhcccCCEEEECCCCC
Q 024713 89 SYVKFVESAGARVIPLIYNE-----PEDVLFEKLELVNGVLYTGGWA 130 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~-----~~~~l~~~l~~~dGlilpGG~~ 130 (263)
.+.+.|++.|++++.+|.-. +.+.....+..+|.|||+-..+
T Consensus 15 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a 61 (240)
T 3mw8_A 15 AMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA 61 (240)
T ss_dssp HHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH
T ss_pred HHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH
Confidence 46678999999887766432 1122222357899999997654
No 203
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=29.77 E-value=1.1e+02 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCeEEEEecCCChhhHHHhcc-----cCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 89 SYVKFVESAGARVIPLIYNEPEDVLFEKLE-----LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~~~~~l~~~l~-----~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
++...++..|++++.++.+ +.+.+++.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 144 ~~~~~~~~~g~~~~~v~~~-d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 208 (401)
T 2bwn_A 144 SMIEGIKRNAGPKRIFRHN-DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP-IKEICDIAEEFG 208 (401)
T ss_dssp HHHHHHHHSCCCEEEECTT-CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEEcCC-CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC-HHHHHHHHHHcC
Confidence 3455678899999988875 5666666554 4557777664332111111 356677776666
No 204
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=29.68 E-value=1.2e+02 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=30.6
Q ss_pred CchhhhHHHHHHHHHH-cCCeEEEEecCCCh-----------------hhHHHhcccCCEEEE
Q 024713 81 TNASYIAASYVKFVES-AGARVIPLIYNEPE-----------------DVLFEKLELVNGVLY 125 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~-~G~~~v~i~~~~~~-----------------~~l~~~l~~~dGlil 125 (263)
.+...++..+.+.+++ .|+++..+...... .. .+.+..+|+|||
T Consensus 13 g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~ 74 (198)
T 3b6i_A 13 GHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIF 74 (198)
T ss_dssp SHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEE
Confidence 3467788888888988 89988887764310 01 234678999987
No 205
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=29.54 E-value=43 Score=27.28 Aligned_cols=92 Identities=5% Similarity=0.012 Sum_probs=45.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEE-EEecCC---------------ChhhHHHhcccCCEEEE
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVI-PLIYNE---------------PEDVLFEKLELVNGVLY 125 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v-~i~~~~---------------~~~~l~~~l~~~dGlil 125 (263)
+++|.+.++.+ ....-++..+.+.++ .|+++. .+.... +...+.+.+..+|+|||
T Consensus 9 Il~I~GS~r~~--------s~t~~la~~~~~~~~-~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi 79 (199)
T 4hs4_A 9 FVTLLGSLRKA--------SFNAAVARALPEIAP-EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI 79 (199)
T ss_dssp EEEEECCCSTT--------CHHHHHHHHHHHHCC-TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEE
T ss_pred EEEEEcCCCCC--------ChHHHHHHHHHHHcc-CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence 67778887632 223334443444443 466666 443210 11234455778999997
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhC-CCCCcceEEeccc
Q 024713 126 TGGWAKDGLYYAIVEKVFKKILEKN-DAGDHFPLYAHCL 163 (263)
Q Consensus 126 pGG~~~~~~~~~~~~~li~~a~~~~-d~g~~~PILGICl 163 (263)
. -|.....+....+.+++++...+ ..-..||++-++.
T Consensus 80 ~-tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~t 117 (199)
T 4hs4_A 80 V-TPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
T ss_dssp E-ECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEE
T ss_pred E-cCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEe
Confidence 4 22222223334566777764311 1112277765544
No 206
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=28.87 E-value=1.2e+02 Score=22.66 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=29.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhcc-cCCEEEEC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLE-LVNGVLYT 126 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~-~~dGlilp 126 (263)
.+...++..+.+.+++.|..+.++..... .+ .+. ..|+|||-
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~g 56 (148)
T 3f6r_A 13 GNTESIAQKLEELIAAGGHEVTLLNAADASAE----NLADGYDAVLFG 56 (148)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTBCCT----TTTTTCSEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEehhhCCHh----HhcccCCEEEEE
Confidence 34677888888889888998888876531 22 255 78988774
No 207
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.49 E-value=1.3e+02 Score=25.60 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhH----HHh-cccCCEEEECCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVL----FEK-LELVNGVLYTGG 128 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l----~~~-l~~~dGlilpGG 128 (263)
....||++..... + ....-+...+.+.+++.|..+++..... .+.. +.. -.++||||+.+.
T Consensus 63 ~~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVIVPDLS-------N-EYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEEESCSS-------S-HHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEEeCCCc-------C-hHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 4468999875421 1 1223345567778888999988876544 3221 111 246899999875
No 208
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=28.37 E-value=1.2e+02 Score=26.07 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCeEEEEecC-------CChhhHHHhcc--cCCEEEECCCCCCChhhH--HHHHHHHHHHHHhC
Q 024713 89 SYVKFVESAGARVIPLIYN-------EPEDVLFEKLE--LVNGVLYTGGWAKDGLYY--AIVEKVFKKILEKN 150 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~-------~~~~~l~~~l~--~~dGlilpGG~~~~~~~~--~~~~~li~~a~~~~ 150 (263)
++...++..|++++.++.+ .+.+.+++.++ +...|+++......+..+ ...+++.+.+.+.+
T Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 193 (391)
T 3dzz_A 121 MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQ 193 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCC
Confidence 3666788999999888763 35666766664 456776644322111111 23457777776666
No 209
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=28.28 E-value=1e+02 Score=24.72 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC----------------------hhhHHHhccc
Q 024713 62 VIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP----------------------EDVLFEKLEL 119 (263)
Q Consensus 62 vIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~----------------------~~~l~~~l~~ 119 (263)
++.|.++|..+ ....-+++.+.+.+ +.|.++..+..... .+.+.+.+..
T Consensus 3 iLiI~gspr~~--------s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (196)
T 3lcm_A 3 ILIVYTHPNPT--------SFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTW 73 (196)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCC--------ChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHh
Confidence 56677777531 22344555555555 56888887765321 1223345667
Q ss_pred CCEEEECCCCCCChhhHHHHHHHHHHHH
Q 024713 120 VNGVLYTGGWAKDGLYYAIVEKVFKKIL 147 (263)
Q Consensus 120 ~dGlilpGG~~~~~~~~~~~~~li~~a~ 147 (263)
+|+|||. -|.....+....+.+++++.
T Consensus 74 AD~iV~~-~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 74 ADHLIFI-FPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp CSEEEEE-EECBTTBCCHHHHHHHHHHS
T ss_pred CCEEEEE-CchhhccccHHHHHHHHHHc
Confidence 8998874 12111112223456666664
No 210
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=33.43 E-value=13 Score=30.51 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=9.1
Q ss_pred HHHhcccCCEEEE
Q 024713 113 LFEKLELVNGVLY 125 (263)
Q Consensus 113 l~~~l~~~dGlil 125 (263)
+.+.+..+|+|||
T Consensus 67 ~~~~i~~AD~iIi 79 (199)
T 3s2y_A 67 MAQQIATADAVVI 79 (199)
Confidence 3445677899887
No 211
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=27.24 E-value=3e+02 Score=23.63 Aligned_cols=79 Identities=10% Similarity=-0.033 Sum_probs=53.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhH
Q 024713 57 LNYRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYY 136 (263)
Q Consensus 57 ~~~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~ 136 (263)
+..+|+|==.|+.-. ..+. .+.+-..|+.+++.. ..+++.+.++.+|++++=-|-. ++.+.
T Consensus 14 ~~~~Plvh~iTN~V~-----------~n~~----AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G~l-~~~~~ 74 (273)
T 3dzv_A 14 LTTAPLIQCITNEIT-----------CESM----ANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLGHL-SQERE 74 (273)
T ss_dssp CCSCCEEEEECCTTT-----------HHHH----HHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECCSC-CHHHH
T ss_pred CCCCCEEEEecCcch-----------hhhH----HHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecCCC-ChHHH
Confidence 467898877776642 2233 357888999998853 4566777788899999876653 34444
Q ss_pred HHHHHHHHHHHHhCCCCCcceEE
Q 024713 137 AIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 137 ~~~~~li~~a~~~~d~g~~~PIL 159 (263)
+.....++.+.+.+ +|+.
T Consensus 75 ~~~~~a~~~a~~~~-----~PvV 92 (273)
T 3dzv_A 75 QSLLAASDYARQVN-----KLTV 92 (273)
T ss_dssp HHHHHHHHHHHHTT-----CCEE
T ss_pred HHHHHHHHHHHHcC-----CcEE
Confidence 44456666676767 8875
No 212
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=26.91 E-value=90 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCeEEEEec
Q 024713 89 SYVKFVESAGARVIPLIY 106 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~ 106 (263)
...+++.+.|.++.++..
T Consensus 32 ~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 32 IILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp HHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHCCCEEEEeCC
Confidence 355677888987655543
No 213
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=26.69 E-value=32 Score=28.29 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCCh----hhHHHhc-ccCCEEEECCCC
Q 024713 86 IAASYVKFVESAGARVIPLIYNEPE----DVLFEKL-ELVNGVLYTGGW 129 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i~~~~~~----~~l~~~l-~~~dGlilpGG~ 129 (263)
+.....+.+++.|..+++.....+. +.++... .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 65 (276)
T 2h0a_A 17 LVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYD 65 (276)
T ss_dssp HHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCC
Confidence 4445667778889887765432221 1222222 468999998764
No 214
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=26.62 E-value=57 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHcCCeEEEE-ecCCChhhHH----HhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 86 IAASYVKFVESAGARVIPL-IYNEPEDVLF----EKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 86 i~~s~v~~le~~G~~~v~i-~~~~~~~~l~----~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
++..+.+.+++.|++++-. .|+.. .+.. +...++|.|+++|.+. .. .++...++.. |...|++|
T Consensus 138 ~~~~F~~~~~~~Gg~vv~~~~y~~~-~d~~~~l~~i~~~pDaV~~~~~~~-------~~-~~i~~~~~~~--g~~~pl~~ 206 (325)
T 2h4a_A 138 VGNAFNVRWQQLAGTDANIRYYNLP-ADVTYFVQENNSNTTALYAVASPT-------EL-AEXKGYLTNI--VPNLAIYA 206 (325)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEESST-THHHHHHHHSTTCCCEEEECCCHH-------HH-HHHHHHHTTT--CTTCEEEE
T ss_pred HHHHHHHHHHHcCCCcceeEecCCH-HHHHHHHHhcCCCCCEEEEeCCHH-------HH-hhhhhhHhhc--CCCCCEEE
Confidence 5566778888888776543 33333 2332 2224689999987632 12 2333333322 45599998
Q ss_pred ccc
Q 024713 161 HCL 163 (263)
Q Consensus 161 ICl 163 (263)
.=.
T Consensus 207 ~~~ 209 (325)
T 2h4a_A 207 SSR 209 (325)
T ss_dssp CGG
T ss_pred ecc
Confidence 743
No 215
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.52 E-value=2e+02 Score=23.80 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCh---hhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEecc
Q 024713 87 AASYVKFVESAGARVIPLIYNEPE---DVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHC 162 (263)
Q Consensus 87 ~~s~v~~le~~G~~~v~i~~~~~~---~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIC 162 (263)
.+.|.+++++.|..++........ +.+..+++.+|+|+.+.. ....+..+.+.+.....+ +||.|.=
T Consensus 151 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~~D----~~a~g~~~~l~~~~~~~~-----i~vig~d 220 (295)
T 3lft_A 151 VEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWVPID----NTIASGFPTVVSSNQSSK-----KPIYPSA 220 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEECSC----HHHHHTHHHHHHHTTTTC-----CCEEESS
T ss_pred HHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHHhcCCEEEECCc----hhHHHHHHHHHHHHHHcC-----CCEEeCC
Confidence 356888999999877655433211 223344567899988642 111121223333333334 9999863
No 216
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.41 E-value=1.2e+02 Score=22.89 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHhc--ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEKL--ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l--~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
..|+..|++++-+-.+.+.+++.+.. .++|.|.++.-.. .+....+++++...+++.. .+||+
T Consensus 25 ~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~g~~--~i~v~ 89 (137)
T 1ccw_A 25 HAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---QGEIDCKGLRQKCDEAGLE--GILLY 89 (137)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---THHHHHTTHHHHHHHTTCT--TCEEE
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc---CcHHHHHHHHHHHHhcCCC--CCEEE
Confidence 47899999999776666666664433 3589999987643 2223344566666554411 26653
No 217
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=26.20 E-value=1.2e+02 Score=25.10 Aligned_cols=43 Identities=16% Similarity=0.002 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCeEEEEecCC-----ChhhHH---HhcccCCEEEECCCCC
Q 024713 88 ASYVKFVESAGARVIPLIYNE-----PEDVLF---EKLELVNGVLYTGGWA 130 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~-----~~~~l~---~~l~~~dGlilpGG~~ 130 (263)
..+.+.|++.|++++.+|.-. +.+.++ ..+..+|.|||+-..+
T Consensus 19 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~a 69 (254)
T 4es6_A 19 AALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPA 69 (254)
T ss_dssp HHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHH
T ss_pred HHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHH
Confidence 457789999999988776432 112222 2356799999997654
No 218
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=25.99 E-value=77 Score=23.39 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=30.6
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCC-hhhHHHhcccCCEEEEC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEP-EDVLFEKLELVNGVLYT 126 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~~l~~~l~~~dGlilp 126 (263)
.+...++..+.+.+++.|..+.++..... .+ .+..+|+|+|-
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~d~iiig 52 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNID----ELLNEDILILG 52 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHH----HHTTCSEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHH----HHhhCCEEEEE
Confidence 45778888888899999988887776432 22 25678988874
No 219
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=25.79 E-value=1e+02 Score=25.95 Aligned_cols=43 Identities=19% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCeEEEEecCC-----ChhhHH---HhcccCCEEEECCCCC
Q 024713 88 ASYVKFVESAGARVIPLIYNE-----PEDVLF---EKLELVNGVLYTGGWA 130 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~-----~~~~l~---~~l~~~dGlilpGG~~ 130 (263)
..+.+.|++.|++++.+|.-. +.+.++ ..+..+|.|||+-..+
T Consensus 27 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~na 77 (269)
T 3re1_A 27 AALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPA 77 (269)
T ss_dssp HHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHH
T ss_pred HHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHH
Confidence 457789999999998776532 222222 2356799999997754
No 220
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=25.31 E-value=1.4e+02 Score=25.49 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=35.9
Q ss_pred HHHHHHHcCCeEEEEecC--------CChhhHHHhcccCCEEEECCCCCCChhh--HHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYN--------EPEDVLFEKLELVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~--------~~~~~l~~~l~~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~ 150 (263)
+...++..|++++.++.+ .+.+.+++.++....|+++--....+.. ....+++.+.+.+.+
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 197 (391)
T 4dq6_A 127 FNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHN 197 (391)
T ss_dssp HHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 556788899999988765 2556676666555556664321111111 123457777776665
No 221
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=25.31 E-value=1.2e+02 Score=25.73 Aligned_cols=60 Identities=20% Similarity=0.033 Sum_probs=35.7
Q ss_pred HHHHHHHcCCeEEEEe--cCC----ChhhHHHhcc------cCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLI--YNE----PEDVLFEKLE------LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~--~~~----~~~~l~~~l~------~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
+...++..|++++.++ .+. +.+.+++.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 106 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~-~~~i~~~~~~~~ 177 (371)
T 2e7j_A 106 SYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD-VKKIAKVCSEYD 177 (371)
T ss_dssp HHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC-HHHHHHHHHTTT
T ss_pred HHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC-HHHHHHHHHHcC
Confidence 4455788999999888 543 4566665554 4567777665332111111 256777766655
No 222
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=25.30 E-value=1.5e+02 Score=22.11 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=26.7
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLY 125 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlil 125 (263)
++...++..+.+.++..|.++.++... +.+ .+...|.|+|
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~-~~~----~l~~~d~vi~ 52 (147)
T 2hna_A 13 GGAEYVAEHLAEKLEEAGFTTETLHGP-LLE----DLPASGIWLV 52 (147)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECCT-TSC----SSCSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHCCCceEEecCC-CHH----HcccCCeEEE
Confidence 446778888888888888888776432 111 2556777776
No 223
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=25.05 E-value=2.2e+02 Score=24.93 Aligned_cols=12 Identities=25% Similarity=0.089 Sum_probs=8.9
Q ss_pred cCCEEEECCCCC
Q 024713 119 LVNGVLYTGGWA 130 (263)
Q Consensus 119 ~~dGlilpGG~~ 130 (263)
.+|.|+-+||..
T Consensus 179 GvdrILTSG~~~ 190 (287)
T 3iwp_A 179 GFERVLTSGCDS 190 (287)
T ss_dssp TCSEEEECTTSS
T ss_pred CCCEEECCCCCC
Confidence 678888888743
No 224
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.62 E-value=2.5e+02 Score=22.51 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=40.8
Q ss_pred HHHHHcCCeEEEEecCCChhhHHHhcc--cCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 92 KFVESAGARVIPLIYNEPEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 92 ~~le~~G~~~v~i~~~~~~~~l~~~l~--~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
..++..|.+++.+..+.+.+.+.+.++ ++|.|.++.-.. ......+++++.+.+.+. .+..||+
T Consensus 110 ~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~~~-~~~~~v~ 175 (210)
T 1y80_A 110 MMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLT---TTMMNMKSTIDALIAAGL-RDRVKVI 175 (210)
T ss_dssp HHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSG---GGTHHHHHHHHHHHHTTC-GGGCEEE
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHhcCC-CCCCeEE
Confidence 477999999998887777777654433 689999998643 223344566666654431 1126655
No 225
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=24.13 E-value=1.6e+02 Score=25.76 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=31.8
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEEC
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYT 126 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilp 126 (263)
.+...++..+.+.+++.|..+.++.... +...+...+..+|+|+|.
T Consensus 263 GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g 309 (398)
T 1ycg_A 263 LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVG 309 (398)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEE
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEE
Confidence 3466777777788888888887776543 234444446789999985
No 226
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=24.04 E-value=1.6e+02 Score=22.11 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHH-HHHHHHHcCCeEEE-------EecCCChhhHHHhcccCCEEEECCCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAAS-YVKFVESAGARVIP-------LIYNEPEDVLFEKLELVNGVLYTGGWA 130 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s-~v~~le~~G~~~v~-------i~~~~~~~~l~~~l~~~dGlilpGG~~ 130 (263)
+.-+++|+..|.. --.+|+++. +.++-++.|..+.+ +....+.++ ++.+|+||+-+.-.
T Consensus 5 ~mkIvaVTaCptG---------iAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~ 71 (111)
T 2kyr_A 5 SKKLIALCACPMG---------LAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQD----IAEATIIIHSVAVT 71 (111)
T ss_dssp CCEEEEEEEESSC---------HHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESSC
T ss_pred cccEEEEEcCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHH----HHhCCEEEEEeCCC
Confidence 3458899998853 345777665 44567788987765 222223343 56799999998766
Q ss_pred C
Q 024713 131 K 131 (263)
Q Consensus 131 ~ 131 (263)
+
T Consensus 72 v 72 (111)
T 2kyr_A 72 P 72 (111)
T ss_dssp C
T ss_pred c
Confidence 5
No 227
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=24.00 E-value=2.1e+02 Score=24.30 Aligned_cols=60 Identities=25% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHHHHHcCCeEEEEecC----CChhhHHHhc---ccCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYN----EPEDVLFEKL---ELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~----~~~~~l~~~l---~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
+.+.++..|++++.++.+ .+.+.+++.+ ++...|+++......+... ..+++.+.+.+.+
T Consensus 110 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 176 (386)
T 2dr1_A 110 YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN-PLPELAKVAKEHD 176 (386)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC-CHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC-CHHHHHHHHHHcC
Confidence 667788899999988864 3456666655 3578888874322111111 1356777776666
No 228
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=23.71 E-value=1.4e+02 Score=25.59 Aligned_cols=39 Identities=15% Similarity=-0.056 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECC
Q 024713 88 ASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTG 127 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpG 127 (263)
..+.++|+..|..|..++...-.++. ..++++|.||++-
T Consensus 20 ~~l~~aL~~~g~~V~~i~~~~~~~~~-~~L~~yDvIIl~d 58 (259)
T 3rht_A 20 GYLAGLMTSWQWEFDYIPSHVGLDVG-ELLAKQDLVILSD 58 (259)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCBCSS-HHHHTCSEEEEES
T ss_pred HHHHHHHHhCCceEEEecccccccCh-hHHhcCCEEEEcC
Confidence 33556899999999888765432211 2377899999974
No 229
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.83 E-value=3.5e+02 Score=22.94 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=34.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCC-hh----hHHHhc-ccCCEEEECCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEP-ED----VLFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~-~~----~l~~~l-~~~dGlilpGG 128 (263)
..+||++..... + .....+...+.+.+++.|..+.+.....+ .+ .++..+ .++||||+.+.
T Consensus 61 ~~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 61 SLLIGVATSSLA-------L-HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp -CEEEEEESCTT-------S-HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCEEEEEeCCCC-------c-ccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 458999874321 1 11233445566778889998877654432 22 122222 46999999753
No 230
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=22.74 E-value=94 Score=28.77 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=29.6
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcc---eEEeccchhHHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHF---PLYAHCLGFELLTM 170 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~---PILGIClG~QlL~~ 170 (263)
+|+-+||+. |.+-.....+++.+...+ . -|+||-.|++=|..
T Consensus 7 ~VltsGGda--pGmNa~Ir~vv~~a~~~g-----~~~~~V~Gi~~G~~GLl~ 51 (419)
T 3hno_A 7 FYAQSGGVT--AVINASAAGVIEAARKQS-----GKIGRIYAGRNGIIGALT 51 (419)
T ss_dssp EEEECSSCC--SSHHHHHHHHHHHHHHHC-----SSCCCEEEETTTHHHHHT
T ss_pred EEEccCCCh--HHHHHHHHHHHHHHHHcC-----CCCcEEEEEeCChHHhCC
Confidence 444555544 666555678888887766 5 69999999987753
No 231
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=22.71 E-value=1.2e+02 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=28.9
Q ss_pred ChhhHHHhcccCCEEEECCCCC---------------CChhhHHHHHHHHHHHHHhC
Q 024713 109 PEDVLFEKLELVNGVLYTGGWA---------------KDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 109 ~~~~l~~~l~~~dGlilpGG~~---------------~~~~~~~~~~~li~~a~~~~ 150 (263)
....++.+++++|.||+.||-+ ......+.++++++++.+++
T Consensus 198 Ki~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~a~~~g 254 (390)
T 1v6s_A 198 KIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALG 254 (390)
T ss_dssp THHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHcC
Confidence 4556677888999999999864 12333445567887776655
No 232
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=22.47 E-value=3.1e+02 Score=22.18 Aligned_cols=52 Identities=17% Similarity=-0.021 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHH---HhcccCCEEEECC
Q 024713 63 IGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLF---EKLELVNGVLYTG 127 (263)
Q Consensus 63 IGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~---~~l~~~dGlilpG 127 (263)
|||++...+ +....+.+++++.|.+++.+..+.....+. ..+..+|.++++.
T Consensus 2 I~il~~~~~-------------~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 56 (280)
T 1uc8_A 2 LAILYDRIR-------------PDERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERC 56 (280)
T ss_dssp EEEEESSCC-------------HHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECC
T ss_pred EEEEecCCC-------------HHHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECC
Confidence 788876532 334457889999999998886543211110 1134688777765
No 233
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=22.47 E-value=3.5e+02 Score=22.75 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhhHHHhcccCCEEEECCCCCCChhhHHH
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDVLFEKLELVNGVLYTGGWAKDGLYYAI 138 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~l~~~l~~~dGlilpGG~~~~~~~~~~ 138 (263)
.+|+|==.|+.-. ..+ -.+.+-..|+.+++... .+++.+.++.+|.+++-.|-. ++...+.
T Consensus 14 ~~plvh~itn~v~-----------~~~----~an~~la~gasp~M~~~---~~e~~~~~~~~dalvi~~G~~-~~~~~~~ 74 (265)
T 1v8a_A 14 RRPLVHNITNFVV-----------MNT----TANALLALGASPVMAHA---EEELEEMIRLADAVVINIGTL-DSGWRRS 74 (265)
T ss_dssp HCCEEEEECCTTT-----------HHH----HHHHHHHHTCEEEECCC---TTTHHHHHHHCSEEEEECTTC-CHHHHHH
T ss_pred cCCeEEEEcccee-----------ecc----hHHHHHhcCCCccccCC---HHHHHHHHHHCCEEEEEECCC-CHHHHHH
Confidence 4677766665532 122 33577789999988543 344555677899999954433 3443344
Q ss_pred HHHHHHHHHHhCCCCCcceEE
Q 024713 139 VEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 139 ~~~li~~a~~~~d~g~~~PIL 159 (263)
...+++.+.+.+ +|+.
T Consensus 75 ~~~~~~~a~~~~-----~pvV 90 (265)
T 1v8a_A 75 MVKATEIANELG-----KPIV 90 (265)
T ss_dssp HHHHHHHHHHHT-----CCEE
T ss_pred HHHHHHHHHHcC-----CcEE
Confidence 445666676777 8874
No 234
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.26 E-value=1.3e+02 Score=24.60 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHh-cccCCEEEECCCC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEK-LELVNGVLYTGGW 129 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~-l~~~dGlilpGG~ 129 (263)
...+||++... .. ....-+...+.+.+++.|..+++.....+.+. ++.. -.++||||+.+..
T Consensus 7 ~~~~Igvi~~~-~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPD-QN--------PFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESS-CC--------HHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECC-CC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 34589998744 21 11233444566777888998877665444322 2222 2468999998764
No 235
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=22.15 E-value=3.9e+02 Score=23.19 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=44.8
Q ss_pred CchhhhHHHHHHHHHHcCCeEEEEecCC-ChhhHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEE
Q 024713 81 TNASYIAASYVKFVESAGARVIPLIYNE-PEDVLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLY 159 (263)
Q Consensus 81 ~~~s~i~~s~v~~le~~G~~~v~i~~~~-~~~~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PIL 159 (263)
.+...++..+.+.+++.|..+..+.... +.+.+.+.+..+|+|||.-.--. .......+.+++......-+|...=++
T Consensus 264 Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~-~~~~~~~~~~l~~l~~~~l~~k~~~~f 342 (402)
T 1e5d_A 264 HSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN-NGILPYVAGTLQYIKGLRPQNKIGGAF 342 (402)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT-TBCCHHHHHHHHHHHHTCCCSCEEEEE
T ss_pred hhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC-CCchHHHHHHHHHhhhcccCCCEEEEE
Confidence 3456677777778888888887777653 33444445678999998643211 111112445555544322234333345
Q ss_pred ecc
Q 024713 160 AHC 162 (263)
Q Consensus 160 GIC 162 (263)
|.+
T Consensus 343 ~t~ 345 (402)
T 1e5d_A 343 GSF 345 (402)
T ss_dssp EEE
T ss_pred EcC
Confidence 543
No 236
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=22.04 E-value=86 Score=26.64 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCeEEEEecCC----ChhhHHHh---cccCCEEEECCCCC
Q 024713 89 SYVKFVESAGARVIPLIYNE----PEDVLFEK---LELVNGVLYTGGWA 130 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~~----~~~~l~~~---l~~~dGlilpGG~~ 130 (263)
.+.+.|++.|++++.+|.-. +.+.+... +..+|.|||+-..+
T Consensus 39 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na 87 (286)
T 1jr2_A 39 PYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA 87 (286)
T ss_dssp HHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH
T ss_pred HHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH
Confidence 46678999999988776421 22333322 36789999998765
No 237
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=21.94 E-value=1.3e+02 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=27.6
Q ss_pred hhhHHHhcccCCEEEECCCCC---------------CChhhHHHHHHHHHHHHHhC
Q 024713 110 EDVLFEKLELVNGVLYTGGWA---------------KDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 110 ~~~l~~~l~~~dGlilpGG~~---------------~~~~~~~~~~~li~~a~~~~ 150 (263)
...++.+++++|.||+.||-+ ........++++++++.+++
T Consensus 201 i~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~ka~~~g 256 (398)
T 1vpe_A 201 IGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKG 256 (398)
T ss_dssp HHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhhHHHHHHHHHHHHhcC
Confidence 345567788999999999864 12333445567777776555
No 238
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=21.89 E-value=1.7e+02 Score=24.75 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHHHHcCCeEEEEecCC----ChhhHHHhcc--cCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYNE----PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~----~~~~l~~~l~--~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
+.+.++..|++++.++.+. +.+.+++.++ +...|++.-.....+.. ...+++.+.+.+.+
T Consensus 136 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~-~~l~~i~~l~~~~~ 201 (397)
T 3f9t_A 136 FEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTI-DNIEELSKIAKENN 201 (397)
T ss_dssp HHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCB-CCHHHHHHHHHHHT
T ss_pred HHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCC-CCHHHHHHHHHHhC
Confidence 5567888899999988763 4566665554 36677766543321211 11456777777777
No 239
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.70 E-value=2.1e+02 Score=23.84 Aligned_cols=61 Identities=3% Similarity=-0.079 Sum_probs=33.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCC----eEEE--EecCCChhhH----HHhc-ccCCEEEECC
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGA----RVIP--LIYNEPEDVL----FEKL-ELVNGVLYTG 127 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~----~~v~--i~~~~~~~~l----~~~l-~~~dGlilpG 127 (263)
....|||+. ... + ...+-+.+.+.+.+++.|. .+.+ .....+.+.. +.+. +++||||+.|
T Consensus 7 ~t~~IGvi~-~~~-------~-p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 7 KTAKVAVSQ-IVE-------H-PALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp CCEEEEEEE-SSC-------C-HHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCcEEEEEE-ecc-------C-hhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 457899983 211 1 1233455667788888998 4433 3333333222 2222 3689999986
Q ss_pred C
Q 024713 128 G 128 (263)
Q Consensus 128 G 128 (263)
.
T Consensus 78 ~ 78 (302)
T 2qh8_A 78 T 78 (302)
T ss_dssp H
T ss_pred h
Confidence 4
No 240
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=21.64 E-value=2.6e+02 Score=24.09 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=34.8
Q ss_pred HHHHHHHcCCeEEEEecCC------ChhhHHHhcc-cCCEEEECCCCCCChhh--HHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYNE------PEDVLFEKLE-LVNGVLYTGGWAKDGLY--YAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~------~~~~l~~~l~-~~dGlilpGG~~~~~~~--~~~~~~li~~a~~~~ 150 (263)
+...++..|++++.++.+. +.+.+++.++ +...|+++......+.. ....+++.+.+.+.+
T Consensus 138 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 207 (389)
T 1o4s_A 138 YIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN 207 (389)
T ss_dssp HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4456788999999888753 4455655443 34567764321111111 123457777777766
No 241
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.55 E-value=2.1e+02 Score=23.06 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=28.1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHc--CCeEEEEec
Q 024713 59 YRPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESA--GARVIPLIY 106 (263)
Q Consensus 59 ~~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~--G~~~v~i~~ 106 (263)
|.-++.|.++|..+. +....-+++.+++.+++. |+++..+..
T Consensus 4 M~kiLiI~gSpr~~~------~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 4 MTKVLFVKANNRPAE------QAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp CCEEEEEECCCSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred cCEEEEEEeCCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 445778888886211 133455677788888887 888877754
No 242
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.48 E-value=2.8e+02 Score=21.29 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=39.0
Q ss_pred hh-hHHHHHHHHHHcCCeEEEEecCCChhhH--HHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEe
Q 024713 84 SY-IAASYVKFVESAGARVIPLIYNEPEDVL--FEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYA 160 (263)
Q Consensus 84 s~-i~~s~v~~le~~G~~~v~i~~~~~~~~l--~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILG 160 (263)
|+ ++..+...+...|..+..+..+. .+.. ...+..=|-+|+-.-.... ....++++.+.+++ .|+.+
T Consensus 50 S~~~a~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~d~~i~iS~sG~t----~~~~~~~~~ak~~g-----~~vi~ 119 (187)
T 3sho_A 50 SAAVAVFLGHGLNSLGIRTTVLTEGG-STLTITLANLRPTDLMIGVSVWRYL----RDTVAALAGAAERG-----VPTMA 119 (187)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEECCCT-HHHHHHHHTCCTTEEEEEECCSSCC----HHHHHHHHHHHHTT-----CCEEE
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCc-hhHHHHHhcCCCCCEEEEEeCCCCC----HHHHHHHHHHHHCC-----CCEEE
Confidence 44 44444567788998887765221 1111 1223333555443332212 23446788888888 99999
Q ss_pred ccc
Q 024713 161 HCL 163 (263)
Q Consensus 161 ICl 163 (263)
|.-
T Consensus 120 IT~ 122 (187)
T 3sho_A 120 LTD 122 (187)
T ss_dssp EES
T ss_pred EeC
Confidence 984
No 243
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=21.37 E-value=3.3e+02 Score=22.77 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=33.7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHHHcCCeEEEEecCCChhh----HHHhc-ccCCEEEECCC
Q 024713 60 RPVIGIVTHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPEDV----LFEKL-ELVNGVLYTGG 128 (263)
Q Consensus 60 ~PvIGI~~~~~~~~~~~~~~~~~~s~i~~s~v~~le~~G~~~v~i~~~~~~~~----l~~~l-~~~dGlilpGG 128 (263)
.-.||++.. +.. .+....+-+.....+..++.|..+.......+.+. ++... +++||||+.|.
T Consensus 5 ~~~Ig~v~~-~~~-----~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 5 GGMVGLLVE-DTI-----DDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp -CEEEEECC-CC---------CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred CcEEEEEEC-CCC-----CCCcHHHHHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 357999874 110 01112333445567788889988766543222221 22222 35899999864
No 244
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=21.12 E-value=3.6e+02 Score=22.38 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCeEEE-EecCCChhhHHHhcccCCEEEE
Q 024713 88 ASYVKFVESAGARVIP-LIYNEPEDVLFEKLELVNGVLY 125 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~-i~~~~~~~~l~~~l~~~dGlil 125 (263)
...++.+++.|.++-+ +...++.+.+..+++.+|-|++
T Consensus 96 ~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~Vlv 134 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITV 134 (231)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEE
Confidence 4678889999988754 4444566777777888998875
No 245
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=20.79 E-value=93 Score=31.33 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=32.6
Q ss_pred EEEECCCCCCChhhHHHHHHHHHHHHHhCCCCCcceEEeccchhHHHH
Q 024713 122 GVLYTGGWAKDGLYYAIVEKVFKKILEKNDAGDHFPLYAHCLGFELLT 169 (263)
Q Consensus 122 GlilpGG~~~~~~~~~~~~~li~~a~~~~d~g~~~PILGIClG~QlL~ 169 (263)
||+-+||+. |.+-.....+++.++..+ .-|+||-.|++=|.
T Consensus 397 gIltsGGda--pGmNaaIravv~~a~~~g-----~~v~Gi~~G~~GL~ 437 (787)
T 3o8o_A 397 GIVHVGAPS--AALNAATRAATLYCLSHG-----HKPYAIMNGFSGLI 437 (787)
T ss_dssp EEEEESSCC--SSHHHHHHHHHHHHHHHT-----CEEEEETTHHHHHH
T ss_pred EEEccCCCC--HHHHHHHHHHHHHHHHCC-----CEEEEEccChhhhC
Confidence 677777766 556555667888888777 89999999999887
No 246
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=20.43 E-value=3e+02 Score=21.28 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCeEEEEecCC-------C-hh-----hHHHhcccCCEEEECCCCCCChhhHHHHHHHHHHHHHh-CCCC
Q 024713 88 ASYVKFVESAGARVIPLIYNE-------P-ED-----VLFEKLELVNGVLYTGGWAKDGLYYAIVEKVFKKILEK-NDAG 153 (263)
Q Consensus 88 ~s~v~~le~~G~~~v~i~~~~-------~-~~-----~l~~~l~~~dGlilpGG~~~~~~~~~~~~~li~~a~~~-~d~g 153 (263)
..+.++|+..|.+++..|... . .+ +..+....+|.++|--|-. .+ ..+++++.++ +
T Consensus 64 ~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~---DF----~plv~~lr~~~G--- 133 (165)
T 2qip_A 64 RQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDG---DF----SLLVERIQQRYN--- 133 (165)
T ss_dssp HHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCG---GG----HHHHHHHHHHHC---
T ss_pred HHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECCh---hH----HHHHHHHHHHcC---
Confidence 457789999999887555321 1 01 1112346788887766632 22 2467777775 8
Q ss_pred CcceEEeccc
Q 024713 154 DHFPLYAHCL 163 (263)
Q Consensus 154 ~~~PILGICl 163 (263)
+.|.+++.
T Consensus 134 --~~V~v~g~ 141 (165)
T 2qip_A 134 --KKVTVYGV 141 (165)
T ss_dssp --CEEEEEEC
T ss_pred --cEEEEEeC
Confidence 99988874
No 247
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=20.15 E-value=1.9e+02 Score=24.96 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=37.0
Q ss_pred HHHHHHHcCCeEEEEecCC----ChhhHHHhcc--cCCEEEECCCCCCChhhHHHHHHHHHHHHHhC
Q 024713 90 YVKFVESAGARVIPLIYNE----PEDVLFEKLE--LVNGVLYTGGWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 90 ~v~~le~~G~~~v~i~~~~----~~~~l~~~l~--~~dGlilpGG~~~~~~~~~~~~~li~~a~~~~ 150 (263)
+.+.++..|++++.++.+. +.+.+++.++ +...|+++......+.... .+++.+.+.+.+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~~ 166 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP-LKAIGEACRTED 166 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-CHHHHHHHHHTT
T ss_pred HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC-HHHHHHHHHHcC
Confidence 5667888999999888753 4566665554 5778888764321111111 345666666666
No 248
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=20.04 E-value=3.6e+02 Score=23.00 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCeEEEEecC-------CChhhHHHhcc--cCCEEEECC-----CCCCChhhHHHHHHHHHHHHHhC
Q 024713 89 SYVKFVESAGARVIPLIYN-------EPEDVLFEKLE--LVNGVLYTG-----GWAKDGLYYAIVEKVFKKILEKN 150 (263)
Q Consensus 89 s~v~~le~~G~~~v~i~~~-------~~~~~l~~~l~--~~dGlilpG-----G~~~~~~~~~~~~~li~~a~~~~ 150 (263)
++...++..|++++.++.+ .+.+.+++.++ +...|+++- |-..+. ...+++.+.+.+.+
T Consensus 123 ~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~---~~l~~l~~~~~~~~ 195 (390)
T 1d2f_A 123 AFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTC---DELEIMADLCERHG 195 (390)
T ss_dssp HHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCT---THHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCH---HHHHHHHHHHHHcC
Confidence 3556778899999888763 34566666554 356777742 211121 23456667666555
Done!