Query 024714
Match_columns 263
No_of_seqs 126 out of 445
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 5.8E-94 1.2E-98 612.8 15.7 238 4-243 1-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.7E-90 3.6E-95 619.6 25.6 240 8-248 1-241 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.2E-85 2.6E-90 587.4 24.5 236 8-245 1-236 (236)
4 KOG0841 Multifunctional chaper 100.0 1.1E-81 2.5E-86 551.4 20.2 240 7-248 1-241 (247)
5 PF13424 TPR_12: Tetratricopep 95.9 0.018 3.8E-07 41.6 4.9 54 152-207 22-75 (78)
6 KOG1840 Kinesin light chain [C 92.8 10 0.00023 37.9 17.7 188 10-212 201-401 (508)
7 TIGR00990 3a0801s09 mitochondr 90.8 6.3 0.00014 39.6 14.0 54 151-206 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 89.2 2.5 5.5E-05 32.0 7.5 73 135-213 3-76 (94)
9 PF04781 DUF627: Protein of un 81.3 4.3 9.3E-05 32.5 5.5 58 107-165 16-74 (111)
10 PF13414 TPR_11: TPR repeat; P 79.5 8.7 0.00019 26.4 6.1 46 152-206 20-66 (69)
11 PF13374 TPR_10: Tetratricopep 78.3 2.2 4.7E-05 26.3 2.4 23 152-174 19-41 (42)
12 PF13174 TPR_6: Tetratricopept 76.8 5.4 0.00012 23.2 3.8 29 10-38 2-30 (33)
13 KOG1840 Kinesin light chain [C 75.5 94 0.002 31.2 19.2 190 10-218 285-490 (508)
14 PF07719 TPR_2: Tetratricopept 74.9 8.5 0.00018 22.5 4.3 28 11-38 4-31 (34)
15 PF13431 TPR_17: Tetratricopep 70.4 5.1 0.00011 24.7 2.6 33 157-198 1-33 (34)
16 PF13181 TPR_8: Tetratricopept 66.2 14 0.0003 21.7 4.0 29 10-38 3-31 (34)
17 PF12569 NARP1: NMDA receptor- 66.1 1.5E+02 0.0033 29.8 17.9 61 145-206 156-222 (517)
18 PF13428 TPR_14: Tetratricopep 64.9 16 0.00034 23.4 4.2 29 10-38 3-31 (44)
19 TIGR00990 3a0801s09 mitochondr 63.6 1.7E+02 0.0036 29.4 16.8 73 152-233 525-597 (615)
20 PF00515 TPR_1: Tetratricopept 61.8 20 0.00043 21.1 4.1 28 11-38 4-31 (34)
21 PF13424 TPR_12: Tetratricopep 58.8 17 0.00038 25.5 4.0 38 173-212 1-38 (78)
22 CHL00033 ycf3 photosystem I as 53.6 1.1E+02 0.0024 24.9 8.5 69 152-229 89-163 (168)
23 KOG4759 Ribosome recycling fac 51.7 83 0.0018 28.9 7.8 72 40-114 182-253 (263)
24 PF13371 TPR_9: Tetratricopept 51.4 62 0.0013 22.1 5.8 61 152-230 12-72 (73)
25 PRK14720 transcript cleavage f 51.2 43 0.00093 36.0 6.8 84 116-209 94-180 (906)
26 PF01765 RRF: Ribosome recycli 49.8 70 0.0015 26.9 6.8 72 41-113 85-156 (165)
27 KOG4162 Predicted calmodulin-b 49.5 3.5E+02 0.0076 28.7 14.9 129 97-240 411-580 (799)
28 PF13176 TPR_7: Tetratricopept 49.1 33 0.00071 21.0 3.6 26 11-36 2-27 (36)
29 PF13432 TPR_16: Tetratricopep 48.9 80 0.0017 21.2 6.6 53 13-69 2-54 (65)
30 TIGR02917 PEP_TPR_lipo putativ 48.2 3E+02 0.0064 27.5 16.0 61 9-73 23-83 (899)
31 PF14559 TPR_19: Tetratricopep 47.9 79 0.0017 21.2 5.8 44 152-204 8-51 (68)
32 PRK15363 pathogenicity island 46.8 1E+02 0.0023 26.1 7.3 72 148-232 82-155 (157)
33 PF06552 TOM20_plant: Plant sp 45.3 89 0.0019 27.3 6.7 79 138-226 38-122 (186)
34 PRK12794 flaF flagellar biosyn 44.7 31 0.00067 28.0 3.6 57 183-239 3-60 (122)
35 smart00028 TPR Tetratricopepti 44.4 47 0.001 17.3 3.8 28 11-38 4-31 (34)
36 COG0233 Frr Ribosome recycling 44.0 1.1E+02 0.0024 26.7 7.1 74 40-114 104-177 (187)
37 COG3947 Response regulator con 43.2 39 0.00084 32.0 4.5 45 190-239 291-335 (361)
38 PF13432 TPR_16: Tetratricopep 42.8 49 0.0011 22.3 4.1 31 8-38 31-61 (65)
39 CHL00033 ycf3 photosystem I as 42.4 89 0.0019 25.5 6.3 49 152-206 52-100 (168)
40 PF13414 TPR_11: TPR repeat; P 40.7 1.1E+02 0.0024 20.6 7.3 45 10-57 5-49 (69)
41 TIGR02521 type_IV_pilW type IV 39.8 2E+02 0.0043 23.1 16.6 58 9-70 32-89 (234)
42 PF05010 TACC: Transforming ac 39.8 2.7E+02 0.0058 24.7 9.5 84 13-111 123-206 (207)
43 cd00520 RRF Ribosome recycling 39.3 1.1E+02 0.0024 26.2 6.5 74 40-114 98-171 (179)
44 PF10083 DUF2321: Uncharacteri 39.1 2E+02 0.0042 24.5 7.7 33 26-60 83-115 (158)
45 TIGR00496 frr ribosome recycli 38.6 1.3E+02 0.0027 25.9 6.7 74 40-114 93-166 (176)
46 PF02259 FAT: FAT domain; Int 38.6 2.9E+02 0.0064 24.8 11.6 30 9-38 147-176 (352)
47 TIGR02795 tol_pal_ybgF tol-pal 38.2 1.6E+02 0.0034 21.5 7.7 45 11-55 5-49 (119)
48 PRK00083 frr ribosome recyclin 37.9 1.3E+02 0.0028 26.0 6.8 74 40-114 102-175 (185)
49 PRK10049 pgaA outer membrane p 37.8 4.9E+02 0.011 27.1 14.4 56 11-71 86-141 (765)
50 PRK15359 type III secretion sy 37.4 82 0.0018 25.4 5.2 44 151-206 74-120 (144)
51 PF03755 YicC_N: YicC-like fam 36.7 69 0.0015 26.7 4.7 62 153-214 82-147 (159)
52 PRK09782 bacteriophage N4 rece 36.0 6.1E+02 0.013 27.7 15.0 26 11-36 512-537 (987)
53 PF08424 NRDE-2: NRDE-2, neces 35.9 2.5E+02 0.0053 26.1 8.8 86 151-243 118-213 (321)
54 PRK12793 flaF flagellar biosyn 35.1 45 0.00098 26.8 3.2 52 187-239 6-58 (115)
55 KOG1156 N-terminal acetyltrans 34.3 2.8E+02 0.0061 28.9 9.2 166 43-240 3-199 (700)
56 PRK02603 photosystem I assembl 34.1 1.5E+02 0.0033 24.2 6.5 49 152-206 52-100 (172)
57 TIGR02917 PEP_TPR_lipo putativ 33.9 4.9E+02 0.011 26.0 16.8 44 9-55 602-645 (899)
58 COG4499 Predicted membrane pro 33.3 80 0.0017 30.8 5.0 47 177-223 231-282 (434)
59 PF14559 TPR_19: Tetratricopep 31.9 73 0.0016 21.4 3.5 53 20-76 3-55 (68)
60 PF12895 Apc3: Anaphase-promot 30.7 74 0.0016 22.8 3.5 44 157-203 40-83 (84)
61 TIGR02795 tol_pal_ybgF tol-pal 30.7 2.1E+02 0.0045 20.8 6.2 28 11-38 42-69 (119)
62 PF12688 TPR_5: Tetratrico pep 30.6 2.3E+02 0.005 22.6 6.6 50 152-207 18-67 (120)
63 PRK11447 cellulose synthase su 29.1 8E+02 0.017 26.9 16.9 29 10-38 114-142 (1157)
64 TIGR03504 FimV_Cterm FimV C-te 28.9 96 0.0021 20.5 3.5 40 12-52 3-42 (44)
65 KOG2002 TPR-containing nuclear 28.8 8.1E+02 0.018 26.9 12.0 133 11-211 167-303 (1018)
66 PLN03088 SGT1, suppressor of 27.9 1.7E+02 0.0037 27.5 6.3 46 156-205 50-97 (356)
67 PF10516 SHNi-TPR: SHNi-TPR; 27.8 72 0.0016 20.4 2.6 37 133-172 2-38 (38)
68 PF13371 TPR_9: Tetratricopept 27.3 1.1E+02 0.0024 20.8 3.9 29 10-38 31-59 (73)
69 PF06160 EzrA: Septation ring 26.8 6.7E+02 0.015 25.3 12.4 41 169-210 508-548 (560)
70 KOG1107 Membrane coat complex 25.9 1.7E+02 0.0036 30.7 6.1 43 150-192 655-698 (760)
71 PRK15331 chaperone protein Sic 25.6 3.8E+02 0.0083 22.9 7.4 69 151-234 87-155 (165)
72 PRK11788 tetratricopeptide rep 24.9 5.3E+02 0.011 23.5 16.5 24 13-36 112-135 (389)
73 KOG0553 TPR repeat-containing 23.8 2.1E+02 0.0044 27.0 5.8 44 153-205 99-142 (304)
74 PHA02103 hypothetical protein 22.7 24 0.00053 28.2 -0.4 14 131-144 78-91 (135)
75 PLN03088 SGT1, suppressor of 22.6 6.4E+02 0.014 23.6 10.4 60 9-72 37-96 (356)
76 KOG0687 26S proteasome regulat 22.2 4E+02 0.0087 25.7 7.4 78 131-211 53-137 (393)
77 PRK02603 photosystem I assembl 22.1 4.4E+02 0.0094 21.5 8.0 13 152-164 89-101 (172)
78 PRK15326 type III secretion sy 22.0 1.7E+02 0.0036 22.1 4.0 36 151-188 20-59 (80)
79 PF08717 nsp8: nsp8 replicase; 21.3 1.1E+02 0.0023 26.9 3.2 39 150-208 14-52 (199)
80 PRK10049 pgaA outer membrane p 21.2 9.5E+02 0.021 25.0 17.8 58 10-71 51-108 (765)
81 PF05008 V-SNARE: Vesicle tran 20.9 3.2E+02 0.0069 19.5 6.7 42 26-69 3-44 (79)
82 KOG3785 Uncharacterized conser 20.9 2.5E+02 0.0054 27.6 5.9 38 151-189 160-197 (557)
83 PF07309 FlaF: Flagellar prote 20.7 1.1E+02 0.0024 24.3 3.0 48 191-239 10-57 (113)
84 KOG0570 Transcriptional coacti 20.5 5.8E+02 0.012 22.7 7.6 54 45-113 108-166 (223)
85 cd02656 MIT MIT: domain contai 20.4 3.2E+02 0.007 19.3 6.6 28 10-37 8-35 (75)
86 PRK10370 formate-dependent nit 20.0 3.4E+02 0.0074 23.1 6.2 47 152-206 90-138 (198)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-94 Score=612.78 Aligned_cols=238 Identities=78% Similarity=1.133 Sum_probs=233.1
Q ss_pred CCCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCch
Q 024714 4 TDSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNED 83 (263)
Q Consensus 4 ~~~~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~ 83 (263)
|+..|++.+|+|||++||+||++|++.||.++..+ .+|+.+|||||||||||+||.||+|||++++++||+++++++.
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~--~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~ 78 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSG--QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTH 78 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChh
Confidence 56679999999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcChhhHHHHHHHHHHHHHHHHH
Q 024714 84 HVSVIKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQD 163 (263)
Q Consensus 84 ~~~~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 163 (263)
++.+|+.||++|++||..||.+|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.+
T Consensus 79 qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Ase 158 (268)
T COG5040 79 QVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASE 158 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhccCCCC
Q 024714 164 IALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITD 243 (263)
Q Consensus 164 la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~e~~~ 243 (263)
+|...||||||||||||||||||||||++++++||.|||+|||+||++||+|+|++|+|||+||||||||||+||++.+.
T Consensus 159 iA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~ 238 (268)
T COG5040 159 IATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238 (268)
T ss_pred HhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997543
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.7e-90 Score=619.65 Aligned_cols=240 Identities=93% Similarity=1.307 Sum_probs=230.2
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHH
Q 024714 8 REENVYMAKLAEQAERYEEMVEFMEKVAKT-VDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVS 86 (263)
Q Consensus 8 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~-~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 86 (263)
|++++|+|||++|||||+||+.+||++++. ++ .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~ 79 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDS-EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVA 79 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHH
Confidence 689999999999999999999999999987 41 4999999999999999999999999999999999987777877889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcChhhHHHHHHHHHHHHHHHHHHHH
Q 024714 87 VIKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIAL 166 (263)
Q Consensus 87 ~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~la~ 166 (263)
.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+
T Consensus 80 ~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~ 159 (244)
T smart00101 80 SIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIAL 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhccCCCCCcc
Q 024714 167 AELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAG 246 (263)
Q Consensus 167 ~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~e~~~~~~ 246 (263)
.+||||||+||||+||||||||||++++++||.+|++|||+|++++|+++|++|+|+|+|||||||||++|+++.+++++
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~ 239 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGA 239 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999776655
Q ss_pred hh
Q 024714 247 DE 248 (263)
Q Consensus 247 ~~ 248 (263)
.+
T Consensus 240 ~~ 241 (244)
T smart00101 240 DE 241 (244)
T ss_pred hh
Confidence 44
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.2e-85 Score=587.41 Aligned_cols=236 Identities=70% Similarity=1.076 Sum_probs=223.4
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHH
Q 024714 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSV 87 (263)
Q Consensus 8 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 87 (263)
|++++|+|||++|||||+||+++||++++.+ ++||.|||||||+||||+|+++|+|||+|++++++++.+|++..++.
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 78 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMN--PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKL 78 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTS--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHH
Confidence 8999999999999999999999999999998 99999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcChhhHHHHHHHHHHHHHHHHHHHHh
Q 024714 88 IKEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALA 167 (263)
Q Consensus 88 i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~la~~ 167 (263)
+++||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..++++.+++++|.++|++|+++|+.
T Consensus 79 i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 158 (236)
T PF00244_consen 79 IKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKK 158 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhccCCCCCc
Q 024714 168 ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDA 245 (263)
Q Consensus 168 ~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~e~~~~~ 245 (263)
+||||||+||||+||||||||||+|++++||+||++||++|++++|++++++|+|+++|||||||||++|+++.++++
T Consensus 159 ~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~~ 236 (236)
T PF00244_consen 159 ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEEE 236 (236)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877653
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-81 Score=551.42 Aligned_cols=240 Identities=80% Similarity=1.138 Sum_probs=233.2
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHH
Q 024714 7 SREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVS 86 (263)
Q Consensus 7 ~re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 86 (263)
+|++++++|+|++|++||+||+.+||.+++.+ .+||.+|||||||+|||+|+++|++||+|+++||++++++++.++.
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~--~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~ 78 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELD--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVK 78 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccc--hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHH
Confidence 48999999999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-chhHHHHHHhhccccchhhhhcChhhHHHHHHHHHHHHHHHHHHH
Q 024714 87 VIKEYRSKIENELSKICDGILSLLESHLIPSASS-AESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIA 165 (263)
Q Consensus 87 ~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~la 165 (263)
.+..||++|+.||..+|++++.++|.+|+|+++. .+++|||+|||||||||++||..|++|++++++++.+|+.|++++
T Consensus 79 ~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia 158 (247)
T KOG0841|consen 79 MIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIA 158 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888 788999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhccCCCCCc
Q 024714 166 LAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDA 245 (263)
Q Consensus 166 ~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~e~~~~~ 245 (263)
+..|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||||+|+++.++++
T Consensus 159 ~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~ 238 (247)
T KOG0841|consen 159 KAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 238 (247)
T ss_pred HhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred chh
Q 024714 246 GDE 248 (263)
Q Consensus 246 ~~~ 248 (263)
...
T Consensus 239 ~~~ 241 (247)
T KOG0841|consen 239 KEA 241 (247)
T ss_pred ccc
Confidence 543
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.87 E-value=0.018 Score=41.58 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 207 (263)
+.|...|++|+++ ...+++.||...-...|.+..++. +|+.++|+...++|++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 5799999999999 567898888777788888887776 79999999999988764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.78 E-value=10 Score=37.93 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc----CCCCCCCH-HHHHHHHHHHhhhhhhhHHHHHHHH-HHhhhhhhcCC--
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKT----VDVEELTV-EERNLLSVAYKNVIGARRASWRIIS-SIEQKEESRGN-- 81 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~----~~~~~Lt~-eERnLlsvayKn~i~~~R~s~R~l~-~ieqk~~~~~~-- 81 (263)
.+.++|.+..+.|+|+.++...|+.++. .....+-. .-.+-|++.|-+. +..+.|..++. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456788888889999999998887754 10012222 2334466665443 44556666654 23333433443
Q ss_pred chhHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcChhhHHHHHHHHHH
Q 024714 82 EDHVSVIK-----EYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLL 156 (263)
Q Consensus 82 ~~~~~~i~-----~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 156 (263)
+.....+. -|+.-=-.|-...|+.+++|..+.+ .+..++..-- +.++.--.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQ-----------LSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHH-----------HHHHHHHHHHhcchhHHHH
Confidence 33333333 2333344688899999999998833 3333332222 2233222222233578899
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024714 157 AYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 212 (263)
Q Consensus 157 aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~l 212 (263)
.|+.|+.+....+++.||.-=|+--|+++-||- +|..++|.++.++|+..+-+..
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcc
Confidence 999999999888999999999999999998886 7999999999999988775543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.79 E-value=6.3 Score=39.65 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024714 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (263)
Q Consensus 151 ~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 206 (263)
.+.|...|++|+.+.. ...+.++..+. .++.+..+|+-.|+.++|..+..+|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3567788888876642 23333332222 345555566666788888777666653
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.17 E-value=2.5 Score=32.03 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=51.7
Q ss_pred cchhhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhc
Q 024714 135 HRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLA-LNFSVFYYEILNSPDRACNLAKQAFDEAISELD 213 (263)
Q Consensus 135 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~la~~~L~pt~pirLgLa-LN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld 213 (263)
.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..-|
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHCC
Confidence 34554444443 245788888888998777777655555554 778887776 69999999999888888876433
No 9
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.32 E-value=4.3 Score=32.52 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcCh-hhHHHHHHHHHHHHHHHHHHH
Q 024714 107 LSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTG-AERKEAAESTLLAYKSAQDIA 165 (263)
Q Consensus 107 i~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~-~~~~~~~~~a~~aY~~A~~la 165 (263)
+.||...+.... ..++-.|-+...|+.|..+|....+ +.+..+.--|.+||.+|..++
T Consensus 16 L~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 444444443332 2233348889999999999988654 566778999999999997654
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.46 E-value=8.7 Score=26.40 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILN-SPDRACNLAKQAFD 206 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~-~~~~A~~iak~afd 206 (263)
+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+....+|+.
T Consensus 20 ~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 5789999999876 34445577788877776 57 78999988888764
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.33 E-value=2.2 Score=26.26 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Q 024714 152 ESTLLAYKSAQDIALAELAPTHP 174 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~p 174 (263)
+.|...|++|+.+.+.-++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57999999999999888899998
No 12
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.82 E-value=5.4 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
-+..+|.+..+.|++++++..+++++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999876
No 13
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.47 E-value=94 Score=31.25 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHH---------HhhhhhhhHHHHHHHHHHhhhhhh
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDV--EELTVEERNLLSVA---------YKNVIGARRASWRIISSIEQKEES 78 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~--~~Lt~eERnLlsva---------yKn~i~~~R~s~R~l~~ieqk~~~ 78 (263)
-+.-+|.+....|+|+++-.+++..++.... ....++--..|+.. |-..+.-.+.+.+++. ...+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 4556788888889999999999988755210 22333322222221 3334444444444443 2211
Q ss_pred cCCch----hHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcChhhHHHHHHH
Q 024714 79 RGNED----HVSVIKE-YRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAES 153 (263)
Q Consensus 79 ~~~~~----~~~~i~~-yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~ 153 (263)
..+.. +.++-.- ++.-=-+|-..+-+.+|.+.....=. .+...-.+++.|=.+|++- +-...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~-----------k~~~~ 427 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEEL-----------KKYEE 427 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHh-----------cccch
Confidence 11100 0011111 11111245556666677666544322 2334556777776666541 12356
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCc
Q 024714 154 TLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEE 218 (263)
Q Consensus 154 a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee 218 (263)
|.+.|.+|..+. ....|.||--++..+|-++- |+-+|+.++|++++..+..-=...+++.+.+
T Consensus 428 a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 428 AEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 889999999999 78999999999999999884 6678999999999998886666666665543
No 14
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.85 E-value=8.5 Score=22.52 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
+..++.+..+.|+|+++++++++.+..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999876
No 15
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.41 E-value=5.1 Score=24.70 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHH
Q 024714 157 AYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRAC 198 (263)
Q Consensus 157 aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~ 198 (263)
+|++|+++ .|.|| ....|++++|+. .|+.++|+
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhc
Confidence 46777653 34554 456788888886 59999986
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.20 E-value=14 Score=21.69 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
-+..++++..+.|.|+.++.++++.++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35678999999999999999999999876
No 17
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=66.14 E-value=1.5e+02 Score=29.79 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC------CCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024714 145 AERKEAAESTLLAYKSAQDIALAELA------PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (263)
Q Consensus 145 ~~~~~~~~~a~~aY~~A~~la~~~L~------pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 206 (263)
..+..++..-...|...++... .++ +..|.-+--++.|-.-+|+.+|+.++|+....+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455666666666666554432 233 235777777888888899999999999999888876
No 18
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=64.93 E-value=16 Score=23.38 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
-...+|+...+.|++++++..+++++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999876
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=63.59 E-value=1.7e+02 Score=29.42 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 231 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLr 231 (263)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-+.-+-+.--+|..++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666664 3555543 22333444444 79999999988887766543222222235666666644444
Q ss_pred hh
Q 024714 232 DN 233 (263)
Q Consensus 232 DN 233 (263)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 20
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=61.81 E-value=20 Score=21.10 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
+..++.+..+.|+|++++.+.++.++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567888899999999999999999887
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=58.80 E-value=17 Score=25.55 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=30.1
Q ss_pred CcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024714 173 HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 212 (263)
Q Consensus 173 ~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~l 212 (263)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888888899988886 79999999999998887 5443
No 22
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.65 E-value=1.1e+02 Score=24.92 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYY------EILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTL 225 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~y------Ei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ 225 (263)
+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|.....+|+.---. .-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHHH
Confidence 5688889888865 2333 233344455554 2478888887777666543222 22345555666655
Q ss_pred HHHH
Q 024714 226 IMQL 229 (263)
Q Consensus 226 IlqL 229 (263)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 4443
No 23
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=51.67 E-value=83 Score=28.93 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024714 40 VEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (263)
Q Consensus 40 ~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 114 (263)
.|+.|.|-|.=|+...+.+...+|.|+|-+..=--+...+... ..-.+-..+++.||..+.++.+..+|..|
T Consensus 182 iP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 182 IPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999885422222211111 02244556788888888888888888754
No 24
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=51.41 E-value=62 Score=22.15 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLL 230 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLL 230 (263)
+.|..+++.++.+ +|-...+-++++.+++. +|+.++|+....++.... + ...+...+.++|
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~--------p-~~~~~~~~~a~l 72 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALELS--------P-DDPDARALRAML 72 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHC--------C-CcHHHHHHHHhc
Confidence 3455565555543 55556667778887776 699999888776666221 1 344556666554
No 25
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=51.21 E-value=43 Score=36.03 Aligned_cols=84 Identities=11% Similarity=-0.045 Sum_probs=51.7
Q ss_pred CCCCCchhHHHHHHhhccccchh-hhhcChh--hHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhC
Q 024714 116 PSASSAESKVFYLKMKGDYHRYL-AEFKTGA--ERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILN 192 (263)
Q Consensus 116 p~~~~~eskvfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~ 192 (263)
+.........||++..|||+.-. |-+.-+. ++-.-.++|..+|++++++ .|.||. +||+=-|+|.-.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~- 163 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE- 163 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-
Confidence 33333455567777777766432 2222221 1112346788999998854 377764 566555555555
Q ss_pred ChHHHHHHHHHHHHHHH
Q 024714 193 SPDRACNLAKQAFDEAI 209 (263)
Q Consensus 193 ~~~~A~~iak~afd~ai 209 (263)
+.++|..++++|+.--+
T Consensus 164 dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 164 DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999987644
No 26
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=49.83 E-value=70 Score=26.87 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024714 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESH 113 (263)
Q Consensus 41 ~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~ 113 (263)
|.+|.|-|.-+..-.|.+.-..|.+.|-+..--.+.-.+ .......-.+-..+++++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999886532222100 000001234455667777777777777777654
No 27
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=49.49 E-value=3.5e+02 Score=28.75 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhc-ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 024714 97 NELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFK-TGAERKEAAESTLLAYKSAQDIALAELAPTHPI 175 (263)
Q Consensus 97 ~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~~la~~~L~pt~pi 175 (263)
+|..++...++++... ....-+---+++-|=-|-..|-.. ..++|...-.++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 5666666666653311 111112223456666666666554 456788889999999999974 678999
Q ss_pred hhhhhhhHHHHHHHHhCChHHHHHHHHHHHHH------------------------HHHhhc----ccC-----------
Q 024714 176 RLGLALNFSVFYYEILNSPDRACNLAKQAFDE------------------------AISELD----TLG----------- 216 (263)
Q Consensus 176 rLgLaLN~SVF~yEi~~~~~~A~~iak~afd~------------------------ai~~ld----~l~----------- 216 (263)
-...+-|++|-+ .++...|.+.++.+..- |+.-+| +..
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 234444555554 57777777777776552 222221 111
Q ss_pred -CcchHhHHHHHHHHHhhHhhhccC
Q 024714 217 -EESYKDSTLIMQLLRDNLTLWTSD 240 (263)
Q Consensus 217 -ee~~~ds~~IlqLLrDNl~~W~~e 240 (263)
+-.+.|....+.+.+.=|.+|..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhh
Confidence 124778888888999999999854
No 28
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=49.08 E-value=33 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAK 36 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 36 (263)
+..+|.+..+.|.|+.++++.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 29
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.92 E-value=80 Score=21.17 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHH
Q 024714 13 YMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRII 69 (263)
Q Consensus 13 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l 69 (263)
.+|...-+.|+|++++..+++++... |. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 46788889999999999999999875 43 5555555655554 334444444443
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.18 E-value=3e+02 Score=27.55 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 024714 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (263)
Q Consensus 9 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ie 73 (263)
..++..|+.+..-|+|++++..+++.+... |+ +.+=+..+..+|-. .+....|...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKD--PN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhC--CC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 457888999999999999999999999875 44 77888888888776 477777777776543
No 31
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=47.94 E-value=79 Score=21.24 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 204 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~a 204 (263)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4577777777643 44455555666677776 59999988876653
No 32
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=46.82 E-value=1e+02 Score=26.07 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcc--hHhHHH
Q 024714 148 KEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEES--YKDSTL 225 (263)
Q Consensus 148 ~~~~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~--~~ds~~ 225 (263)
..--+.|.++|..|..+ .|.||- ...|.++-+. .+|+.+.|+ ++|+.||.-....++.. ..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L-~lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYL-ACDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHH-HcCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 34457788888888754 445552 1334444333 368887765 57888887665444321 233555
Q ss_pred HHHHHHh
Q 024714 226 IMQLLRD 232 (263)
Q Consensus 226 IlqLLrD 232 (263)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 5655554
No 33
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.26 E-value=89 Score=27.30 Aligned_cols=79 Identities=29% Similarity=0.406 Sum_probs=47.1
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCc---chhhhhhhHHHHHHHHhCChHHH---HHHHHHHHHHHHHh
Q 024714 138 LAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHP---IRLGLALNFSVFYYEILNSPDRA---CNLAKQAFDEAISE 211 (263)
Q Consensus 138 laE~~~~~~~~~~~~~a~~aY~~A~~la~~~L~pt~p---irLgLaLN~SVF~yEi~~~~~~A---~~iak~afd~ai~~ 211 (263)
++-|..+.+.+++++.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+| .+.|...|+.|...
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHhc
Confidence 6777888888889999999999998762 2222 4466665544443 3455444 45666778877753
Q ss_pred hcccCCcchHhHHHH
Q 024714 212 LDTLGEESYKDSTLI 226 (263)
Q Consensus 212 ld~l~ee~~~ds~~I 226 (263)
+-+.+.|+.+..+
T Consensus 110 --~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 --DPNNELYRKSLEM 122 (186)
T ss_dssp ---TT-HHHHHHHHH
T ss_pred --CCCcHHHHHHHHH
Confidence 2344567766544
No 34
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=44.66 E-value=31 Score=27.98 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHH-HHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhcc
Q 024714 183 FSVF-YYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTS 239 (263)
Q Consensus 183 ~SVF-~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~ 239 (263)
+|.+ |-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 3 ~a~~AY~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 3 MAAQAYARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 3444 44455566666677777888888877766554223335678999999999995
No 35
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=44.36 E-value=47 Score=17.27 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
+..++.+..+.++|++++.++.+.+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3467788888999999999999888654
No 36
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=43.98 E-value=1.1e+02 Score=26.75 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024714 40 VEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (263)
Q Consensus 40 ~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 114 (263)
.|+||.|-|.=|..-.|.+.-..|-|.|-+..=-... .+...+-...-.+-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999988888888874211110 0101000112355666778888888888888887754
No 37
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.21 E-value=39 Score=31.95 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=39.3
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhcc
Q 024714 190 ILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTS 239 (263)
Q Consensus 190 i~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~ 239 (263)
-.|.+..|+++.+.+.. +|.|+|+.++--+.++-+++||+..=++
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 36999999999998764 7899999999999999999999987554
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=42.81 E-value=49 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 8 REENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 8 re~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
.+-+..++.+..+.|+|++++.++.+++...
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566788999999999999999999998876
No 39
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=42.40 E-value=89 Score=25.48 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 206 (263)
+.|...|++|+.+. |.++.......|.++.+. ..|+.++|+....+|+.
T Consensus 52 ~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 52 AEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 57888899988763 223333334556655544 47999999998888774
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=40.72 E-value=1.1e+02 Score=20.56 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKN 57 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn 57 (263)
.+..++.++-+.|+|++++.++++.++.+ |. +..=..-++.+|..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHH
Confidence 45678899999999999999999999886 44 23333444444433
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=39.81 E-value=2e+02 Score=23.14 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024714 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIIS 70 (263)
Q Consensus 9 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~ 70 (263)
.-...++...-..|+|+.++..+++.+... |. +..-...+...|-.. +....+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~-~~~~~A~~~~~ 89 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-DYLAYLALALYYQQL-GELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 345667888888899999999999998765 43 344444555554432 33444444443
No 42
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.80 E-value=2.7e+02 Score=24.65 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHH
Q 024714 13 YMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYR 92 (263)
Q Consensus 13 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr 92 (263)
|.++|..+-.||+-+-.....- -+..++|..-+-..++.-+...+..+|--..-.+- .-..| .-+
T Consensus 123 y~~~l~~~eqry~aLK~hAeek------L~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~S--------Le~~L-eQK 187 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEK------LEKANEEIAQVRSKHQAELLALQASLKKEEMKVQS--------LEESL-EQK 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHH-HHH
Confidence 5666666666666554433222 22335666666666666666666666654210000 00111 112
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 024714 93 SKIENELSKICDGILSLLE 111 (263)
Q Consensus 93 ~ki~~EL~~~C~eii~lId 111 (263)
.+=..||..||.++|.=++
T Consensus 188 ~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 188 TKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 2334799999999986543
No 43
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=39.31 E-value=1.1e+02 Score=26.25 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024714 40 VEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (263)
Q Consensus 40 ~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 114 (263)
.|++|.|-|.=|....|...-..|.+.|-+..--.+.- +........-++-.++.+++|..+.++.+.-||..+
T Consensus 98 iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 98 LPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999998888888888888888887743111110 000000001233444566666666666666666543
No 44
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.05 E-value=2e+02 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhh
Q 024714 26 EMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIG 60 (263)
Q Consensus 26 Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~ 60 (263)
..++..+++++.. .+||.+|++.|..+...++-
T Consensus 83 ~~L~aa~el~ee~--eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIEED--EELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHHHh--hcCCHHHHHHHHhhhHHHhh
Confidence 4566777888866 89999999999999998764
No 45
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=38.62 E-value=1.3e+02 Score=25.90 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024714 40 VEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (263)
Q Consensus 40 ~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 114 (263)
.|+||.|-|.=|....|...-..|.+.|-+..--.+.- +...+....-++-.++++++|..+.++.+.-||..+
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999998888888888888887743111100 000000001134455666666666666666666543
No 46
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=38.62 E-value=2.9e+02 Score=24.77 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 9 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
.-.+.+|+++-.+|+|+=+..++.++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 456789999999999999999998887543
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=38.16 E-value=1.6e+02 Score=21.51 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAY 55 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvay 55 (263)
+...+....+.|+|++++..+.+++..++...+..+-+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344555566666777777766666655421234444444444443
No 48
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=37.87 E-value=1.3e+02 Score=25.99 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024714 40 VEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHL 114 (263)
Q Consensus 40 ~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~L 114 (263)
.|+||.|-|.=|....|...-..|.+.|-+..--.+.-.+ ..+....-++-.++.++|+..+.++.+.-||..+
T Consensus 102 iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 102 IPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999888888888888888875321111000 0000001134445666677777666666666543
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=37.76 E-value=4.9e+02 Score=27.11 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ 71 (263)
...+|.+.-..|++++++..+++++... |+-.. ...+..++.. .+....+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~--~~~la~~l~~-~g~~~~Al~~l~~ 141 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN--LLALAYVYKR-AGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHH-CCCHHHHHHHHHH
Confidence 3455555556666666666666666554 33333 5555555543 2444445544443
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=37.36 E-value=82 Score=25.42 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCc---chhhhhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024714 151 AESTLLAYKSAQDIALAELAPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (263)
Q Consensus 151 ~~~a~~aY~~A~~la~~~L~pt~p---irLgLaLN~SVF~yEi~~~~~~A~~iak~afd 206 (263)
.+.|..+|+.|+. +.|.|| .+||.++. -+|++++|+.....|..
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~a~~~lg~~l~-------~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPEPVYQTGVCLK-------MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH
Confidence 4568899999885 445555 33343332 47999998886666554
No 51
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=36.66 E-value=69 Score=26.71 Aligned_cols=62 Identities=26% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhH-HHHH-HHH--hCChHHHHHHHHHHHHHHHHhhcc
Q 024714 153 STLLAYKSAQDIALAELAPTHPIRLGLALNF-SVFY-YEI--LNSPDRACNLAKQAFDEAISELDT 214 (263)
Q Consensus 153 ~a~~aY~~A~~la~~~L~pt~pirLgLaLN~-SVF~-yEi--~~~~~~A~~iak~afd~ai~~ld~ 214 (263)
....+|-+++.-....++...|+.+...|.+ .||. .+- ....+..-.....++++|++.+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665567888889999999998 5665 221 112223457788999999888754
No 52
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=36.04 E-value=6.1e+02 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAK 36 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~ 36 (263)
.+.+|.+..+.|+|++++...++++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34445555666666666666666543
No 53
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.87 E-value=2.5e+02 Score=26.05 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhc----------CCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcch
Q 024714 151 AESTLLAYKSAQDIALAE----------LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESY 220 (263)
Q Consensus 151 ~~~a~~aY~~A~~la~~~----------L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~ 220 (263)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 345666777776655332 233356888999999999999 599999999999888877643333333222
Q ss_pred HhHHHHHHHHHhhHhhhccCCCC
Q 024714 221 KDSTLIMQLLRDNLTLWTSDITD 243 (263)
Q Consensus 221 ~ds~~IlqLLrDNl~~W~~e~~~ 243 (263)
. +.++.=-.=|.++.+-
T Consensus 197 ~------~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPR 213 (321)
T ss_pred H------HHHHHHHHHhCcCCCC
Confidence 1 4444445789887663
No 54
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=35.06 E-value=45 Score=26.78 Aligned_cols=52 Identities=27% Similarity=0.348 Sum_probs=41.3
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhcc
Q 024714 187 YYEILNSPD-RACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTS 239 (263)
Q Consensus 187 ~yEi~~~~~-~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~ 239 (263)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 556777666 7778888899999988877665544 677888999999999995
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=34.26 E-value=2.8e+02 Score=28.92 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCc
Q 024714 43 LTVEERNLLSVAYKNV-IGARRASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESHLIPSASSA 121 (263)
Q Consensus 43 Lt~eERnLlsvayKn~-i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~ 121 (263)
|++.|-.||-.+.|.. ..+++++++.+.+|-.+-...|..-..+-+.-+.--=.+|-...|.-.+. .+.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----------~d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----------NDL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc----------cCc
Confidence 8899999999999985 56789999999998876544443321111111100011222333332221 112
Q ss_pred hhHHHHHHhhccccchhhhhcChhhHHHHHHHHHHHHHHHHHHHHhc------------------------------CCC
Q 024714 122 ESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAE------------------------------LAP 171 (263)
Q Consensus 122 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~la~~~------------------------------L~p 171 (263)
.| -++|..-|=+||=- ++ -..|..||+.|+.+...+ -|.
T Consensus 73 ~S-~vCwHv~gl~~R~d--------K~--Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSD--------KK--YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhh--------hh--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 35667767666621 11 135677777776443221 122
Q ss_pred CCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhccC
Q 024714 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSD 240 (263)
Q Consensus 172 t~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~e 240 (263)
.|.-++|+|+.+ + ..|+...|..|..+--.... ..++-..|.-+.++ |..|..+-..+
T Consensus 142 ~ra~w~~~Avs~----~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~---Ly~n~i~~E~g 199 (700)
T KOG1156|consen 142 QRASWIGFAVAQ----H-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELL---LYQNQILIEAG 199 (700)
T ss_pred hHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHH---HHHHHHHHHcc
Confidence 233334444332 2 36888888888766444443 34555556555444 45555554443
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=34.09 E-value=1.5e+02 Score=24.23 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 206 (263)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+....+|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 467888998887642 222223345566665555 7999999988777766
No 57
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=33.88 E-value=4.9e+02 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 024714 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAY 55 (263)
Q Consensus 9 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvay 55 (263)
+-...++.+..+.|+|++++..++++++.. |. +..-...+..+|
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~ 645 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PD-SALALLLLADAY 645 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHH
Confidence 344556666666677777777777766554 22 333444444444
No 58
>COG4499 Predicted membrane protein [Function unknown]
Probab=33.31 E-value=80 Score=30.75 Aligned_cols=47 Identities=30% Similarity=0.392 Sum_probs=39.4
Q ss_pred hhhhhhHHHHHHHHhCChHHHHHHHHHHH-----HHHHHhhcccCCcchHhH
Q 024714 177 LGLALNFSVFYYEILNSPDRACNLAKQAF-----DEAISELDTLGEESYKDS 223 (263)
Q Consensus 177 LgLaLN~SVF~yEi~~~~~~A~~iak~af-----d~ai~~ld~l~ee~~~ds 223 (263)
|-|++=|.+|+|-+..-.+.||.-|.+|| +..|..++.+|.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 44678899999999999999999999995 789999998887754443
No 59
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.91 E-value=73 Score=21.43 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=34.6
Q ss_pred HhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Q 024714 20 QAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE 76 (263)
Q Consensus 20 q~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqk~ 76 (263)
+.|+|++++..+++++..+ |. +.+=+-.+..+|-.. +..-.|-+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 4577888888888887765 44 666666666666554 56666667776655554
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=30.71 E-value=74 Score=22.76 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHH
Q 024714 157 AYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203 (263)
Q Consensus 157 aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~ 203 (263)
-|++|+.+.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 34555555543 3333433344443333233 36888777776544
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.65 E-value=2.1e+02 Score=20.84 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
...++.+..+.|+|+.++.+++.++...
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 4456666666666666666666666554
No 62
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=30.57 E-value=2.3e+02 Score=22.57 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 207 (263)
+.|...|++|+. ...+.|.|-+..++.+--+-. +|.+++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALA-----AGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=29.06 E-value=8e+02 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
..+.+|++.-..|+|++++..++++++.+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~ 142 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA 142 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC
Confidence 35788999999999999999999998765
No 64
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.86 E-value=96 Score=20.47 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 024714 12 VYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLS 52 (263)
Q Consensus 12 ~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLls 52 (263)
+-+|+..-..|.++.+.+.+.+++..++ ++.-.+-+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~-~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD-EAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 4578889999999999999999996542 444555566653
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.80 E-value=8.1e+02 Score=26.89 Aligned_cols=133 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhh--HHHHHHHHHHhhhhhhcCCchhHHHH
Q 024714 11 NVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGAR--RASWRIISSIEQKEESRGNEDHVSVI 88 (263)
Q Consensus 11 l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~--R~s~R~l~~ieqk~~~~~~~~~~~~i 88 (263)
|+=.|+|+-+=++|--++.+.|.+.-.+ |..-.+-|-....+|=++-.+. +.||--...+.+. +....-.+
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~in--p~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-----~v~alv~L 239 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRIN--PACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT-----CVSALVAL 239 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcC--cccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh-----hHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHhhccccchhhhhcChhhHHHHHHHHHHHHHHHHHHHHh-
Q 024714 89 KEYRSKIENELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALA- 167 (263)
Q Consensus 89 ~~yr~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~la~~- 167 (263)
-.++..-.+. ++|..|+.+-..
T Consensus 240 ~~~~l~~~d~---------------------------------------------------------~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 240 GEVDLNFNDS---------------------------------------------------------DSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHHccch---------------------------------------------------------HHHHHHHHHHHHH
Q ss_pred -cCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024714 168 -ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISE 211 (263)
Q Consensus 168 -~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ 211 (263)
...|.||.-|...-||=+| -|+.+.++.+|-.||..+...
T Consensus 263 y~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=27.88 E-value=1.7e+02 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHh--cCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024714 156 LAYKSAQDIALA--ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (263)
Q Consensus 156 ~aY~~A~~la~~--~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~af 205 (263)
.-|++|+..+.. .+.|.+| ...++.++.|+. +|+.+.|+...++|+
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 445555555432 2444443 233344444443 577777766544443
No 67
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.76 E-value=72 Score=20.41 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=26.9
Q ss_pred cccchhhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024714 133 DYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPT 172 (263)
Q Consensus 133 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~la~~~L~pt 172 (263)
|.|--++|+.-..++. +.|..=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4455567776665543 578889999999988878773
No 68
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.29 E-value=1.1e+02 Score=20.82 Aligned_cols=29 Identities=28% Similarity=0.209 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTV 38 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~ 38 (263)
-...+|.+..+.|+|.+.+..+.++++..
T Consensus 31 ~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 31 LWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34567778888888888888888887665
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.76 E-value=6.7e+02 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=23.3
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 024714 169 LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIS 210 (263)
Q Consensus 169 L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~ 210 (263)
...+|| .+.-+|.-|-.+|.--++..+|+++|.+|++.+-+
T Consensus 508 YR~~~~-~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~veP 548 (560)
T PF06160_consen 508 YRSDNP-EVDEALTEAEDLFRNEYDYEKALETIATALEKVEP 548 (560)
T ss_pred ccCCCH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCC
Confidence 444444 44445555555555446666677776666665544
No 70
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.86 E-value=1.7e+02 Score=30.68 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchh-hhhhhHHHHHHHHhC
Q 024714 150 AAESTLLAYKSAQDIALAELAPTHPIRL-GLALNFSVFYYEILN 192 (263)
Q Consensus 150 ~~~~a~~aY~~A~~la~~~L~pt~pirL-gLaLN~SVF~yEi~~ 192 (263)
--++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--+
T Consensus 655 dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 655 DGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 3467899999999999999999999777 447898888888533
No 71
>PRK15331 chaperone protein SicA; Provisional
Probab=25.58 E-value=3.8e+02 Score=22.89 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHH
Q 024714 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLL 230 (263)
Q Consensus 151 ~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLL 230 (263)
-++|.++|--|.-+.. =.|.-|.+.|. .|=.+|++.+|.. +|.-|+..-. ...-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~--~dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLK--NDYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHccc--CCCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 4566666666665543 23333444443 3335788888876 7777776311 111233366666666
Q ss_pred HhhH
Q 024714 231 RDNL 234 (263)
Q Consensus 231 rDNl 234 (263)
.+|.
T Consensus 152 ~~~~ 155 (165)
T PRK15331 152 KTAE 155 (165)
T ss_pred Hccc
Confidence 6554
No 72
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=24.95 E-value=5.3e+02 Score=23.46 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhh
Q 024714 13 YMAKLAEQAERYEEMVEFMEKVAK 36 (263)
Q Consensus 13 ~~Aklaeq~eRy~Dm~~~mk~~i~ 36 (263)
.++.+..+.|+|+++..+++++.+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Confidence 334444444555555555555443
No 73
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.79 E-value=2.1e+02 Score=26.98 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024714 153 STLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (263)
Q Consensus 153 ~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~af 205 (263)
.|.+.|.+|+ .|.|+|||+.. |-|-=|- -+|..+.|++-|+.|+
T Consensus 99 eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 99 EAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHHH
Confidence 4566666665 47778877543 2222222 2566666666555553
No 74
>PHA02103 hypothetical protein
Probab=22.72 E-value=24 Score=28.18 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.2
Q ss_pred hccccchhhhhcCh
Q 024714 131 KGDYHRYLAEFKTG 144 (263)
Q Consensus 131 kgDyyRYlaE~~~~ 144 (263)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 56999999986655
No 75
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=22.60 E-value=6.4e+02 Score=23.60 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 024714 9 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSI 72 (263)
Q Consensus 9 e~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~i 72 (263)
.-+..+|.+..+.|+|++++..+.+++..+ |. +..=...+..+|-. .+.+..|.+.+...
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~-~~~a~~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELD--PS-LAKAYLRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-CHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 345677888888899999999998888876 43 34445555665543 46666676666543
No 76
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=4e+02 Score=25.72 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=50.8
Q ss_pred hccccchhhhhcC---hhhH----HHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHH
Q 024714 131 KGDYHRYLAEFKT---GAER----KEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203 (263)
Q Consensus 131 kgDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~ 203 (263)
-++||.|+||-.. +..+ .+.-+.=.+-..++++-|++++.- +-+| ...+|-+-||-.| ||++.|.+....
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE-~ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGE-SEVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4778888988432 1111 111222234456667777766554 3343 3457777777776 999999999999
Q ss_pred HHHHHHHh
Q 024714 204 AFDEAISE 211 (263)
Q Consensus 204 afd~ai~~ 211 (263)
+++++++-
T Consensus 130 t~~ktvs~ 137 (393)
T KOG0687|consen 130 TYEKTVSL 137 (393)
T ss_pred HHHHHhhc
Confidence 99999874
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=22.12 E-value=4.4e+02 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDI 164 (263)
Q Consensus 152 ~~a~~aY~~A~~l 164 (263)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5678888888864
No 78
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=21.98 E-value=1.7e+02 Score=22.15 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhh----hhhhHHHHHH
Q 024714 151 AESTLLAYKSAQDIALAELAPTHPIRLG----LALNFSVFYY 188 (263)
Q Consensus 151 ~~~a~~aY~~A~~la~~~L~pt~pirLg----LaLN~SVF~y 188 (263)
+....+.-+.|++-- ...|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555556665433 58999999998 5667777643
No 79
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=21.29 E-value=1.1e+02 Score=26.90 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 024714 150 AAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (263)
Q Consensus 150 ~~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~a 208 (263)
.-+.|+++|++|..- . ..| ..++...+|+.|||..||.=
T Consensus 14 ~Ye~A~~~Ye~av~n---g---~~~--------------q~~Kql~KA~NIAKse~drd 52 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---G---SSP--------------QELKQLKKAMNIAKSEFDRD 52 (199)
T ss_dssp HHHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---C---CCH--------------HHHHHHHHHHhHHHHHHhHH
Confidence 347899999999752 1 111 12567789999999999853
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=21.15 E-value=9.5e+02 Score=25.01 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ 71 (263)
-+..+|.++...|++++++.++++++... |.- .+=+..+..++- -.+....+...+..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~-~~a~~~la~~l~-~~g~~~eA~~~l~~ 108 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQN-DDYQRGLILTLA-DAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 36788888888899999999998888765 332 333333333331 22334444444443
No 81
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.94 E-value=3.2e+02 Score=19.48 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhHHHHHHH
Q 024714 26 EMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRII 69 (263)
Q Consensus 26 Dm~~~mk~~i~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l 69 (263)
....-+...+..- +.++.++|+-...-....+..-..-+..+
T Consensus 3 ~l~~~i~~~l~~~--~~~~~~~r~~~i~~~e~~l~ea~~~l~qM 44 (79)
T PF05008_consen 3 ALTAEIKSKLERI--KNLSGEQRKSLIREIERDLDEAEELLKQM 44 (79)
T ss_dssp HHHHHHHHHHHHG--GGS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 44555788877777777777766655555
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.90 E-value=2.5e+02 Score=27.56 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHH
Q 024714 151 AESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYE 189 (263)
Q Consensus 151 ~~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yE 189 (263)
+--....|++|+++=+.-|. ++|-.+||-.+.+..||.
T Consensus 160 vhYmR~HYQeAIdvYkrvL~-dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 160 VHYMRMHYQEAIDVYKRVLQ-DNPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cChhhhhhHHHHHHHHHh
Confidence 34456789999999865454 799999999999888774
No 83
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=20.70 E-value=1.1e+02 Score=24.33 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=29.7
Q ss_pred hCChHHHHHHHHHHHHHHHHhhcccCCcchHhHHHHHHHHHhhHhhhcc
Q 024714 191 LNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTS 239 (263)
Q Consensus 191 ~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~IlqLLrDNl~~W~~ 239 (263)
.+....+.++=..+|..+...|....+..-. +..-+.-|.+|..+|+.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 3344445555566777777777655522222 22223999999999995
No 84
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=20.45 E-value=5.8e+02 Score=22.73 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhhhhh-----HHHHHHHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024714 45 VEERNLLSVAYKNVIGAR-----RASWRIISSIEQKEESRGNEDHVSVIKEYRSKIENELSKICDGILSLLESH 113 (263)
Q Consensus 45 ~eERnLlsvayKn~i~~~-----R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eii~lId~~ 113 (263)
.++...+-+-..++|+.+ |.|+|+|...+- .++..+.+++...|.++.++|+..
T Consensus 108 vedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi---------------~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 108 VEDIRTIFVNLHHLINEYRPHQARESLIMLMERQI---------------EQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788899876 577888754221 133344455556666666666443
No 85
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=20.42 E-value=3.2e+02 Score=19.32 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 024714 10 ENVYMAKLAEQAERYEEMVEFMEKVAKT 37 (263)
Q Consensus 10 ~l~~~Aklaeq~eRy~Dm~~~mk~~i~~ 37 (263)
.++-.|--.++.|+|++++.+..+.++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555667778889999999888777643
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.04 E-value=3.4e+02 Score=23.15 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhhhhhhHHHHHHHHhCC--hHHHHHHHHHHHH
Q 024714 152 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNS--PDRACNLAKQAFD 206 (263)
Q Consensus 152 ~~a~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~--~~~A~~iak~afd 206 (263)
+.|..+|++|+.+ .|.+| .+.++++.-+|...|+ .++|..+..++..
T Consensus 90 ~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 90 DNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4577777777643 23333 3345555544434455 4666666665544
Done!