Query 024715
Match_columns 263
No_of_seqs 176 out of 1451
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 13:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 2.1E-17 7.3E-22 117.6 5.1 87 19-106 3-91 (94)
2 1wd2_A Ariadne-1 protein homol 99.6 2.9E-17 1E-21 105.7 1.4 50 179-231 4-57 (60)
3 2ct7_A Ring finger protein 31; 99.3 6.5E-14 2.2E-18 97.5 -2.6 75 89-169 3-81 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.3 1.1E-13 3.9E-18 94.7 -2.8 70 87-161 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.1 1.7E-11 5.7E-16 92.2 1.7 119 19-194 5-126 (133)
6 3hcs_A TNF receptor-associated 98.9 2E-09 6.7E-14 84.5 7.2 86 17-127 14-99 (170)
7 2ct2_A Tripartite motif protei 98.9 1.4E-09 4.8E-14 75.7 5.0 66 16-88 10-75 (88)
8 2ysl_A Tripartite motif-contai 98.9 2.3E-09 7.9E-14 71.9 4.9 56 18-84 17-72 (73)
9 1g25_A CDK-activating kinase a 98.8 1.7E-09 5.8E-14 70.9 3.5 60 20-88 2-62 (65)
10 2djb_A Polycomb group ring fin 98.8 1.1E-08 3.8E-13 68.3 6.2 59 18-89 12-70 (72)
11 2ecv_A Tripartite motif-contai 98.8 1.2E-08 4.1E-13 70.2 6.2 60 18-85 16-75 (85)
12 2ecy_A TNF receptor-associated 98.7 1.1E-08 3.9E-13 67.1 5.1 53 19-84 13-65 (66)
13 2ecw_A Tripartite motif-contai 98.7 1.4E-08 4.9E-13 69.9 5.8 60 18-85 16-75 (85)
14 1e4u_A Transcriptional repress 98.7 1.3E-08 4.4E-13 69.1 5.1 57 19-84 9-65 (78)
15 2ysj_A Tripartite motif-contai 98.7 1.9E-08 6.7E-13 65.3 5.8 46 18-72 17-62 (63)
16 1rmd_A RAG1; V(D)J recombinati 98.7 4.7E-09 1.6E-13 77.0 2.9 84 19-126 21-104 (116)
17 3ng2_A RNF4, snurf, ring finge 98.7 1E-08 3.5E-13 68.2 3.8 59 19-87 8-69 (71)
18 1jm7_A BRCA1, breast cancer ty 98.7 2.4E-08 8.4E-13 72.6 6.1 73 19-102 19-92 (112)
19 2ecm_A Ring finger and CHY zin 98.7 9E-09 3.1E-13 64.9 3.2 52 19-80 3-54 (55)
20 1t1h_A Gspef-atpub14, armadill 98.7 2.5E-08 8.5E-13 67.7 5.4 67 19-98 6-73 (78)
21 2egp_A Tripartite motif-contai 98.7 3.8E-09 1.3E-13 71.9 0.8 60 19-85 10-69 (79)
22 2yur_A Retinoblastoma-binding 98.7 1.7E-08 5.9E-13 67.8 4.0 54 15-80 9-63 (74)
23 3ztg_A E3 ubiquitin-protein li 98.7 1.7E-08 6E-13 70.7 4.2 49 19-79 11-60 (92)
24 2xeu_A Ring finger protein 4; 98.6 1.5E-08 5.1E-13 65.9 3.2 58 20-87 2-62 (64)
25 3hct_A TNF receptor-associated 98.6 6.4E-08 2.2E-12 71.2 6.9 86 17-127 14-99 (118)
26 2ea6_A Ring finger protein 4; 98.6 2.6E-08 9E-13 65.7 4.4 54 18-81 12-68 (69)
27 3lrq_A E3 ubiquitin-protein li 98.6 5.1E-08 1.7E-12 69.5 5.3 57 19-87 20-76 (100)
28 2ect_A Ring finger protein 126 98.6 2.1E-08 7.1E-13 68.1 3.0 58 18-86 12-69 (78)
29 3knv_A TNF receptor-associated 98.6 4.4E-09 1.5E-13 79.9 -0.5 91 18-126 28-120 (141)
30 2kiz_A E3 ubiquitin-protein li 98.6 7E-08 2.4E-12 63.8 5.3 54 17-81 10-63 (69)
31 2d8t_A Dactylidin, ring finger 98.6 2.5E-08 8.6E-13 66.4 2.6 56 17-86 11-66 (71)
32 2csy_A Zinc finger protein 183 98.5 9.8E-08 3.4E-12 65.2 5.3 49 18-80 12-60 (81)
33 2y43_A E3 ubiquitin-protein li 98.5 4.8E-08 1.6E-12 69.5 3.2 68 19-99 20-88 (99)
34 2yu4_A E3 SUMO-protein ligase 98.5 1.9E-07 6.5E-12 65.7 5.6 61 18-84 4-66 (94)
35 2ep4_A Ring finger protein 24; 98.5 9.7E-08 3.3E-12 64.0 4.0 53 18-81 12-64 (74)
36 2ecj_A Tripartite motif-contai 98.5 1.5E-07 5E-12 59.9 4.4 46 18-72 12-57 (58)
37 1x4j_A Ring finger protein 38; 98.4 8.2E-08 2.8E-12 64.6 2.9 53 18-81 20-72 (75)
38 1iym_A EL5; ring-H2 finger, ub 98.4 5.9E-08 2E-12 61.1 1.9 52 19-80 3-54 (55)
39 3htk_C E3 SUMO-protein ligase 98.4 1.4E-07 4.6E-12 77.8 4.0 68 9-85 169-236 (267)
40 3fl2_A E3 ubiquitin-protein li 98.4 1.8E-07 6.2E-12 69.3 4.1 50 19-81 50-99 (124)
41 1v87_A Deltex protein 2; ring- 98.4 2.8E-07 9.5E-12 67.2 4.5 58 19-81 23-94 (114)
42 1bor_A Transcription factor PM 98.4 7.4E-08 2.5E-12 61.0 0.8 48 18-82 3-50 (56)
43 2kr4_A Ubiquitin conjugation f 98.4 9E-07 3.1E-11 61.0 6.3 52 19-84 12-63 (85)
44 1z6u_A NP95-like ring finger p 98.3 9E-07 3.1E-11 67.8 6.1 50 20-82 77-126 (150)
45 2l0b_A E3 ubiquitin-protein li 98.3 3.1E-07 1E-11 64.2 2.9 52 19-81 38-89 (91)
46 2ecn_A Ring finger protein 141 98.3 6.4E-08 2.2E-12 64.1 -0.7 51 18-83 12-62 (70)
47 4ayc_A E3 ubiquitin-protein li 98.2 3.6E-07 1.2E-11 69.0 2.6 48 21-82 53-100 (138)
48 3l11_A E3 ubiquitin-protein li 98.2 1.7E-07 5.9E-12 68.5 0.7 51 18-81 12-62 (115)
49 1wgm_A Ubiquitin conjugation f 98.2 1.4E-06 4.6E-11 61.8 5.3 51 19-83 20-71 (98)
50 2ckl_A Polycomb group ring fin 98.2 1E-06 3.6E-11 63.5 4.7 51 19-82 13-63 (108)
51 1chc_A Equine herpes virus-1 r 98.2 5.5E-07 1.9E-11 59.2 2.6 50 19-81 3-52 (68)
52 1jm7_B BARD1, BRCA1-associated 98.2 2.2E-07 7.4E-12 68.2 0.6 50 19-84 20-70 (117)
53 2ckl_B Ubiquitin ligase protei 98.2 9.1E-07 3.1E-11 68.8 4.2 51 19-81 52-102 (165)
54 2kre_A Ubiquitin conjugation f 98.2 1.7E-06 5.7E-11 61.5 4.3 51 19-83 27-77 (100)
55 2ecl_A Ring-box protein 2; RNF 98.0 1E-06 3.6E-11 60.1 1.3 56 19-84 13-79 (81)
56 4ap4_A E3 ubiquitin ligase RNF 98.0 3.6E-06 1.2E-10 62.6 3.6 60 18-87 69-131 (133)
57 4ic3_A E3 ubiquitin-protein li 97.9 8.9E-07 3.1E-11 59.3 -1.0 45 19-81 22-67 (74)
58 2ecg_A Baculoviral IAP repeat- 97.9 2.9E-06 9.8E-11 56.9 1.3 45 19-81 23-68 (75)
59 3dpl_R Ring-box protein 1; ubi 97.9 7.6E-06 2.6E-10 58.7 3.5 55 19-83 35-103 (106)
60 2d8s_A Cellular modulator of i 97.9 8.8E-06 3E-10 55.2 3.5 55 19-83 13-72 (80)
61 2c2l_A CHIP, carboxy terminus 97.8 1.3E-05 4.4E-10 67.3 3.9 53 18-83 205-257 (281)
62 2ct7_A Ring finger protein 31; 97.8 1.8E-05 6E-10 54.5 3.4 41 180-220 24-68 (86)
63 2ea5_A Cell growth regulator w 97.7 1.5E-05 5.3E-10 52.2 2.8 47 17-81 11-58 (68)
64 2f42_A STIP1 homology and U-bo 97.7 2.5E-05 8.4E-10 61.2 3.9 52 19-83 104-155 (179)
65 2vje_B MDM4 protein; proto-onc 97.7 2.3E-05 7.7E-10 50.6 2.8 51 19-81 5-56 (63)
66 2vje_A E3 ubiquitin-protein li 97.7 2.2E-05 7.6E-10 50.8 2.8 51 19-81 6-57 (64)
67 2jmo_A Parkin; IBR, E3 ligase, 97.6 2.9E-05 1E-09 52.6 2.9 42 180-222 24-73 (80)
68 2y1n_A E3 ubiquitin-protein li 97.6 5.3E-05 1.8E-09 66.3 4.8 52 20-84 331-382 (389)
69 2yho_A E3 ubiquitin-protein li 97.4 9E-06 3.1E-10 55.1 -1.8 46 19-82 16-62 (79)
70 2ct0_A Non-SMC element 1 homol 97.4 0.00015 5.1E-09 48.2 3.9 53 19-82 13-65 (74)
71 4a0k_B E3 ubiquitin-protein li 97.3 3.7E-05 1.3E-09 55.9 0.4 53 20-82 47-113 (117)
72 3k1l_B Fancl; UBC, ring, RWD, 97.1 0.00044 1.5E-08 59.1 4.7 62 18-81 305-373 (381)
73 3t6p_A Baculoviral IAP repeat- 96.5 0.00043 1.5E-08 59.9 -0.1 44 20-81 294-338 (345)
74 1vyx_A ORF K3, K3RING; zinc-bi 96.4 0.0031 1.1E-07 39.9 3.5 52 18-81 3-59 (60)
75 1wd2_A Ariadne-1 protein homol 96.3 0.003 1E-07 40.0 3.0 40 108-153 4-45 (60)
76 2bay_A PRE-mRNA splicing facto 96.2 0.0031 1.1E-07 40.1 2.9 52 21-86 3-55 (61)
77 3vk6_A E3 ubiquitin-protein li 95.0 0.019 6.5E-07 39.8 3.5 47 23-81 3-49 (101)
78 2jun_A Midline-1; B-BOX, TRIM, 93.5 0.031 1.1E-06 39.0 2.0 26 132-157 69-95 (101)
79 2cs3_A Protein C14ORF4, MY039 93.2 0.22 7.7E-06 32.8 5.4 51 18-72 12-63 (93)
80 3nw0_A Non-structural maintena 92.9 0.089 3E-06 42.9 4.0 53 19-82 178-230 (238)
81 2k4x_A 30S ribosomal protein S 85.9 0.32 1.1E-05 29.9 1.5 28 181-208 18-46 (55)
82 2jrp_A Putative cytoplasmic pr 85.7 0.57 2E-05 31.1 2.8 33 182-216 3-41 (81)
83 3j20_Y 30S ribosomal protein S 84.8 0.38 1.3E-05 28.9 1.5 29 180-208 18-47 (50)
84 3qt1_I DNA-directed RNA polyme 83.4 0.79 2.7E-05 33.6 3.0 38 105-144 19-56 (133)
85 1pft_A TFIIB, PFTFIIBN; N-term 83.0 1.2 4E-05 26.5 3.2 28 181-208 5-34 (50)
86 1wfh_A Zinc finger (AN1-like) 82.3 1.6 5.5E-05 27.5 3.6 39 180-222 14-52 (64)
87 3j20_Y 30S ribosomal protein S 81.3 1 3.5E-05 27.0 2.4 30 109-144 18-47 (50)
88 1vq8_Z 50S ribosomal protein L 80.8 0.63 2.1E-05 31.2 1.5 30 180-209 26-56 (83)
89 1weo_A Cellulose synthase, cat 80.1 4.5 0.00016 27.2 5.4 53 19-80 14-69 (93)
90 1weo_A Cellulose synthase, cat 79.2 3.5 0.00012 27.7 4.6 42 132-197 33-74 (93)
91 3lrq_A E3 ubiquitin-protein li 78.9 0.48 1.6E-05 32.8 0.4 31 182-217 23-54 (100)
92 1wfl_A Zinc finger protein 216 78.1 2.3 7.9E-05 27.6 3.4 38 181-222 25-62 (74)
93 1wg2_A Zinc finger (AN1-like) 78.0 2.3 7.8E-05 26.8 3.3 39 180-222 14-52 (64)
94 2jne_A Hypothetical protein YF 74.3 2 6.9E-05 29.4 2.5 34 182-217 33-72 (101)
95 2jr6_A UPF0434 protein NMA0874 74.2 2.2 7.7E-05 27.3 2.6 29 180-208 7-36 (68)
96 3u5c_f 40S ribosomal protein S 72.0 1.8 6.2E-05 32.5 2.1 33 110-146 118-150 (152)
97 3h0g_I DNA-directed RNA polyme 71.7 2.7 9.3E-05 29.8 2.8 34 109-144 3-36 (113)
98 2ct2_A Tripartite motif protei 71.1 1.3 4.3E-05 29.4 0.9 36 181-217 15-50 (88)
99 2ko5_A Ring finger protein Z; 69.8 3.1 0.00011 28.3 2.5 48 19-82 26-74 (99)
100 1wfp_A Zinc finger (AN1-like) 68.3 4.8 0.00016 26.1 3.1 39 180-222 24-62 (74)
101 2k5c_A Uncharacterized protein 66.4 4 0.00014 26.9 2.4 22 67-90 8-30 (95)
102 1twf_I B12.6, DNA-directed RNA 65.1 3.6 0.00012 29.6 2.3 34 109-144 3-36 (122)
103 3qt1_I DNA-directed RNA polyme 64.7 3.2 0.00011 30.4 2.0 34 175-208 18-56 (133)
104 1wff_A Riken cDNA 2810002D23 p 64.2 5 0.00017 26.8 2.7 40 180-222 24-63 (85)
105 1z2q_A LM5-1; membrane protein 63.5 3.3 0.00011 27.6 1.8 37 18-54 18-54 (84)
106 1wep_A PHF8; structural genomi 63.4 8.4 0.00029 25.1 3.8 63 18-86 9-71 (79)
107 2ckl_B Ubiquitin ligase protei 62.8 2.3 7.9E-05 32.1 1.0 31 182-217 55-86 (165)
108 2yw8_A RUN and FYVE domain-con 61.7 2.6 8.9E-05 27.9 1.0 37 18-54 16-52 (82)
109 3u5c_f 40S ribosomal protein S 61.2 4 0.00014 30.5 2.1 30 181-210 118-150 (152)
110 3h0g_I DNA-directed RNA polyme 61.0 4.8 0.00016 28.5 2.3 28 181-208 4-36 (113)
111 2d8v_A Zinc finger FYVE domain 60.5 2.8 9.5E-05 26.5 0.9 35 18-57 5-40 (67)
112 2hf1_A Tetraacyldisaccharide-1 59.2 5.7 0.0002 25.3 2.2 28 181-208 8-36 (68)
113 2js4_A UPF0434 protein BB2007; 58.8 6.3 0.00022 25.3 2.4 29 180-208 7-36 (70)
114 2hu9_A MERP, mercuric transpor 58.8 3.3 0.00011 30.1 1.2 46 68-125 2-50 (130)
115 2pk7_A Uncharacterized protein 57.8 6.8 0.00023 25.0 2.4 29 180-208 7-36 (69)
116 4ayc_A E3 ubiquitin-protein li 57.1 3 0.0001 30.5 0.7 32 182-218 54-85 (138)
117 3fl2_A E3 ubiquitin-protein li 56.7 2.7 9.2E-05 30.0 0.4 31 182-217 53-83 (124)
118 1x4u_A Zinc finger, FYVE domai 56.5 3.4 0.00012 27.5 0.9 36 18-53 11-46 (84)
119 3t7l_A Zinc finger FYVE domain 56.0 3.3 0.00011 28.0 0.7 36 19-54 18-53 (90)
120 3vth_A Hydrogenase maturation 55.9 7.1 0.00024 37.2 3.2 60 19-80 109-194 (761)
121 1twf_I B12.6, DNA-directed RNA 55.8 5.9 0.0002 28.4 2.1 30 180-209 3-37 (122)
122 1joc_A EEA1, early endosomal a 55.8 3.3 0.00011 29.9 0.7 37 19-55 67-103 (125)
123 3knv_A TNF receptor-associated 55.6 2.5 8.5E-05 31.2 0.0 32 181-217 31-62 (141)
124 1vq8_Z 50S ribosomal protein L 53.9 8.1 0.00028 25.7 2.4 32 109-146 26-57 (83)
125 1z60_A TFIIH basal transcripti 53.8 3.5 0.00012 25.6 0.5 36 111-155 16-51 (59)
126 3mjh_B Early endosome antigen 53.7 2.7 9.2E-05 22.9 -0.0 18 19-36 3-20 (34)
127 2vpb_A Hpygo1, pygopus homolog 52.7 7.3 0.00025 24.5 1.9 38 18-55 5-43 (65)
128 1wfk_A Zinc finger, FYVE domai 51.4 5.1 0.00017 26.9 1.1 36 19-54 7-42 (88)
129 1vfy_A Phosphatidylinositol-3- 50.4 4.6 0.00016 26.0 0.7 32 22-53 12-43 (73)
130 2xzm_9 RPS31E; ribosome, trans 49.9 6.3 0.00022 30.6 1.5 29 181-210 113-143 (189)
131 2jny_A Uncharacterized BCR; st 49.8 10 0.00035 24.1 2.2 29 180-208 9-38 (67)
132 2o35_A Hypothetical protein DU 49.7 7.5 0.00025 26.6 1.6 17 46-62 42-58 (105)
133 3fyb_A Protein of unknown func 49.1 7.7 0.00026 26.5 1.6 17 46-62 41-57 (104)
134 1fre_A Nuclear factor XNF7; zi 49.0 14 0.00048 20.5 2.6 26 132-157 12-38 (42)
135 1we9_A PHD finger family prote 47.9 5.1 0.00017 24.9 0.6 36 18-53 3-38 (64)
136 2xzm_6 RPS27E; ribosome, trans 47.5 8 0.00027 25.5 1.5 31 111-146 33-63 (81)
137 3iz6_X 40S ribosomal protein S 47.4 9.9 0.00034 25.3 1.9 32 111-147 37-68 (86)
138 1wii_A Hypothetical UPF0222 pr 46.0 13 0.00044 24.8 2.4 28 181-208 23-57 (85)
139 1twf_L ABC10-alpha, DNA-direct 45.9 6.4 0.00022 25.3 0.8 24 182-206 29-53 (70)
140 1x4v_A Hypothetical protein LO 45.7 11 0.00038 23.6 1.9 33 110-151 12-44 (63)
141 2yvr_A Transcription intermedi 45.7 6.4 0.00022 23.0 0.8 27 132-158 16-42 (50)
142 3hcs_A TNF receptor-associated 45.6 4.5 0.00015 30.6 0.0 31 182-217 19-49 (170)
143 3u5c_b RP61, YS20, 40S ribosom 44.3 7.1 0.00024 25.8 0.8 31 111-146 35-65 (82)
144 1dl6_A Transcription factor II 44.2 14 0.00047 22.6 2.1 28 180-207 10-39 (58)
145 1y02_A CARP2, FYVE-ring finger 43.7 6.6 0.00023 28.1 0.7 39 18-56 16-54 (120)
146 2akl_A PHNA-like protein PA012 43.6 9 0.00031 27.7 1.4 30 108-144 25-54 (138)
147 1wfe_A Riken cDNA 2310008M20 p 42.4 18 0.0006 24.2 2.6 33 110-151 25-57 (86)
148 1qxf_A GR2, 30S ribosomal prot 41.3 15 0.00052 23.1 2.0 31 111-146 8-38 (66)
149 1x4w_A Hypothetical protein FL 40.4 6.1 0.00021 25.1 0.1 39 180-221 14-54 (67)
150 2kpi_A Uncharacterized protein 40.3 20 0.00069 21.7 2.4 27 180-208 9-38 (56)
151 2apo_B Ribosome biogenesis pro 39.0 29 0.00098 21.4 3.0 36 68-105 19-54 (60)
152 1zbd_B Rabphilin-3A; G protein 38.2 7.8 0.00027 28.3 0.4 34 19-52 53-87 (134)
153 3j20_W 30S ribosomal protein S 37.3 20 0.00068 22.4 2.0 31 111-146 16-46 (63)
154 2ri7_A Nucleosome-remodeling f 36.9 6.8 0.00023 29.7 -0.1 79 18-102 5-83 (174)
155 3m7n_A Putative uncharacterize 36.5 17 0.00057 27.8 2.0 24 182-207 141-165 (179)
156 3ddt_A E3 ubiquitin-protein li 36.5 11 0.00038 21.7 0.8 26 132-157 16-42 (48)
157 3lqh_A Histone-lysine N-methyl 32.9 5 0.00017 31.1 -1.5 77 22-101 3-85 (183)
158 3a1b_A DNA (cytosine-5)-methyl 32.6 27 0.00092 26.2 2.5 55 16-78 74-134 (159)
159 2lbm_A Transcriptional regulat 32.5 53 0.0018 24.1 4.1 54 17-77 59-116 (142)
160 1gh9_A 8.3 kDa protein (gene M 32.3 19 0.00066 23.0 1.5 12 180-192 20-31 (71)
161 2did_A Tripartite motif protei 32.2 16 0.00053 21.5 1.0 26 132-157 17-43 (53)
162 3ql9_A Transcriptional regulat 31.5 78 0.0027 22.8 4.8 52 18-77 54-110 (129)
163 1ee8_A MUTM (FPG) protein; bet 30.4 23 0.0008 28.9 2.0 25 182-206 236-263 (266)
164 2dlq_A GLI-kruppel family memb 30.1 1.2E+02 0.0042 20.1 7.5 94 19-145 5-105 (124)
165 1lv3_A Hypothetical protein YA 29.8 15 0.00053 23.3 0.7 14 179-192 7-20 (68)
166 2xzf_A Formamidopyrimidine-DNA 29.4 21 0.00072 29.3 1.6 25 182-206 243-270 (271)
167 2csv_A Tripartite motif protei 29.3 16 0.00056 23.0 0.8 28 132-159 27-54 (72)
168 2k16_A Transcription initiatio 29.2 44 0.0015 21.2 2.9 55 18-79 15-69 (75)
169 3nyb_B Protein AIR2; polya RNA 28.4 38 0.0013 22.3 2.5 19 142-160 5-23 (83)
170 1k82_A Formamidopyrimidine-DNA 28.4 22 0.00076 29.1 1.6 24 182-205 241-267 (268)
171 1dvp_A HRS, hepatocyte growth 28.2 13 0.00043 29.5 0.1 34 21-54 161-194 (220)
172 3u6p_A Formamidopyrimidine-DNA 28.2 22 0.00074 29.3 1.5 24 182-205 246-272 (273)
173 2aus_D NOP10, ribosome biogene 28.2 49 0.0017 20.4 2.7 36 68-105 18-53 (60)
174 3zyq_A Hepatocyte growth facto 27.9 15 0.0005 29.3 0.4 34 21-54 164-197 (226)
175 1k3x_A Endonuclease VIII; hydr 27.7 23 0.0008 28.8 1.6 24 182-205 235-261 (262)
176 2d8u_A Ubiquitin ligase TRIM63 27.6 21 0.0007 21.8 1.0 27 132-158 18-45 (64)
177 2dja_A Midline-2; tripartite m 27.2 19 0.00066 23.4 0.9 28 132-159 28-56 (84)
178 4g9i_A Hydrogenase maturation 27.2 34 0.0012 32.6 2.9 59 19-79 104-188 (772)
179 1wee_A PHD finger family prote 27.0 16 0.00053 23.3 0.3 39 14-53 9-47 (72)
180 2k2d_A Ring finger and CHY zin 26.8 20 0.00069 23.4 0.9 27 110-142 37-63 (79)
181 1wys_A Riken cDNA 2310008M20 p 26.7 49 0.0017 21.4 2.7 43 111-164 15-57 (75)
182 2yrg_A Tripartite motif-contai 26.6 23 0.0008 21.4 1.1 26 132-157 23-49 (59)
183 2das_A Zinc finger MYM-type pr 26.1 1E+02 0.0035 18.9 3.8 41 15-55 14-55 (62)
184 2jx1_A Myelin transcription fa 25.9 31 0.0011 18.2 1.3 11 68-78 2-12 (31)
185 1nui_A DNA primase/helicase; z 25.4 35 0.0012 27.4 2.3 22 182-206 15-41 (255)
186 2f9y_B Acetyl-coenzyme A carbo 24.9 14 0.00047 31.0 -0.3 31 178-208 21-53 (304)
187 3v2d_5 50S ribosomal protein L 24.7 37 0.0013 20.9 1.8 26 106-142 26-51 (60)
188 2xb1_A Pygopus homolog 2, B-ce 24.7 18 0.00062 25.0 0.3 57 20-78 2-61 (105)
189 2yww_A Aspartate carbamoyltran 24.4 33 0.0011 25.4 1.7 33 109-144 104-143 (149)
190 1odh_A MGCM1; transcription fa 23.9 27 0.00091 26.2 1.1 30 180-215 109-143 (174)
191 1qf8_A Casein kinase II; casei 23.5 1.1E+02 0.0038 23.4 4.6 35 108-142 104-142 (182)
192 1wem_A Death associated transc 22.3 79 0.0027 20.0 3.1 33 20-54 15-47 (76)
193 2zjr_Z 50S ribosomal protein L 22.3 50 0.0017 20.3 2.0 27 106-143 26-52 (60)
194 2klu_A T-cell surface glycopro 22.1 75 0.0026 19.9 2.7 18 235-252 12-29 (70)
195 2jvx_A NF-kappa-B essential mo 22.1 20 0.00069 18.4 0.1 17 20-36 2-18 (28)
196 2kvh_A Zinc finger and BTB dom 21.2 38 0.0013 15.5 1.1 11 134-144 3-13 (27)
197 3na7_A HP0958; flagellar bioge 21.1 69 0.0023 25.8 3.2 25 170-194 211-235 (256)
198 1k81_A EIF-2-beta, probable tr 21.0 50 0.0017 17.9 1.6 25 183-207 2-30 (36)
199 2ffw_A Midline-1; B-BOX, ring 20.6 1E+02 0.0035 19.7 3.4 37 19-56 28-65 (78)
200 2pv0_B DNA (cytosine-5)-methyl 20.4 58 0.002 28.2 2.7 36 17-56 89-126 (386)
201 3ttc_A HYPF, transcriptional r 20.0 33 0.0011 32.0 1.2 59 19-79 15-99 (657)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.68 E-value=2.1e-17 Score=117.59 Aligned_cols=87 Identities=18% Similarity=0.482 Sum_probs=75.7
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCc--cCccccccCCChhhHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHN--LDPFACEPVIPASLFSKW 96 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--l~~~~i~~~l~~~~~~~~ 96 (263)
.+.++|+||++++..++. ..+.+|+|.||.+||+.|++.++.++...++.||.++|+.. ++++.++.+|+++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQM-TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGE-EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccc-eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 467899999999965543 33457999999999999999999875557899999999999 999999999999999999
Q ss_pred HHHHHHHhhc
Q 024715 97 CDVLCEDYVL 106 (263)
Q Consensus 97 ~~~~~~~~~~ 106 (263)
++++.+.++.
T Consensus 82 ~~~~~~~~v~ 91 (94)
T 1wim_A 82 KKLQFERSGP 91 (94)
T ss_dssp HHHHHHSSCS
T ss_pred HHHHHHhhhc
Confidence 9998887764
No 2
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.64 E-value=2.9e-17 Score=105.73 Aligned_cols=50 Identities=28% Similarity=0.769 Sum_probs=41.8
Q ss_pred CCcccCCCCCceeecCCCCceeEee---cCCceecccCcccCC-CCCCCCcccchhh
Q 024715 179 MKWARCPACGHCVERKDGCSVVMCR---CNTRFCYECGRKISS-GCSCQTIGFCQLT 231 (263)
Q Consensus 179 ~~~k~CP~C~~~i~k~~GCnhm~C~---C~~~FC~~C~~~~~~-~~~~~~~~~c~~~ 231 (263)
.++|+||+|+++|||++|||||+|+ |+++|||+|+++|.. |.++ +.|+.|
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~---y~C~~y 57 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAW---YNCNRY 57 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSS---SSSCSC
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCcc---ccCCCc
Confidence 5789999999999999999999995 999999999999873 3332 356654
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.30 E-value=6.5e-14 Score=97.45 Aligned_cols=75 Identities=29% Similarity=0.594 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHHHhh-cCCCcccCCccccccceeccccccCCCCceeCCccccccccccccCC---CCCCCchhHHhc
Q 024715 89 PASLFSKWCDVLCEDYV-LGFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKW---HAGYRCEESRNL 164 (263)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~ 164 (263)
+.+++++|++++.+.++ .+++++||| +|++.++.... ...+.|+.|+..||+.|+.+| |.+.+|++++.|
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC----CCceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 34667788888888888 456778999 89998877654 567999999999999999999 999999999998
Q ss_pred cccch
Q 024715 165 RDQND 169 (263)
Q Consensus 165 ~~~~~ 169 (263)
.++++
T Consensus 77 ~~~n~ 81 (86)
T 2ct7_A 77 KRMNS 81 (86)
T ss_dssp HHHHT
T ss_pred HHhCc
Confidence 76543
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-13 Score=94.73 Aligned_cols=70 Identities=24% Similarity=0.535 Sum_probs=61.4
Q ss_pred CCChhhHHHHHHHHHHHhhcCCCcccCCccccccceeccccccCCCCceeCC-----ccccccccccccCCCCCCCchhH
Q 024715 87 VIPASLFSKWCDVLCEDYVLGFERSYCPNTNCMALVVNECERSGKVKKTQCP-----NCKQWFCFQCKLKWHAGYRCEES 161 (263)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~~ 161 (263)
+|+++++++|++++.+.++...+.+|||.|+|+..+..... ...+.|+ .|++.||+.|+.+||. .+|...
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC----CCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 57788899999999999986667999999999999987653 5779998 9999999999999999 999753
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=1.7e-11 Score=92.24 Aligned_cols=119 Identities=22% Similarity=0.563 Sum_probs=82.1
Q ss_pred CCcccccccccccccc---ccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChhhHHH
Q 024715 19 GSSFTCEICIEPMAAS---KKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSK 95 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~ 95 (263)
.+.++|+||++.+.++ ......++|||.||.+|+.+|+.. ...||. |+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~i------ 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIYI------ 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECBC------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCcccccccccc------
Confidence 4678999999999655 122235899999999999999862 238999 999998776655421
Q ss_pred HHHHHHHHhhcCCCcccCCccccccceeccccccCCCCceeCCccccccccccccCCCCCCCchhHHhccccchHHHHHH
Q 024715 96 WCDVLCEDYVLGFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAGYRCEESRNLRDQNDIVFGQL 175 (263)
Q Consensus 96 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~ 175 (263)
..+...|| -|...+...... ........|+..||..|...|.
T Consensus 69 -----------~~~~~~C~--iC~~~~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~---------------------- 110 (133)
T 4ap4_A 69 -----------GSGTVSCP--ICMDGYSEIVQN---GRLIVSTECGHVFCSQCLRDSL---------------------- 110 (133)
T ss_dssp -----------SSSSCBCT--TTCCBHHHHHHT---TCCEEEETTSBEEEHHHHHHHH----------------------
T ss_pred -----------CCCCCCCC--CCCCcccccccc---CcceEeCCCCChhhHHHHHHHH----------------------
Confidence 13456687 787665443221 1233344699999998866541
Q ss_pred HhcCCcccCCCCCceeecC
Q 024715 176 VERMKWARCPACGHCVERK 194 (263)
Q Consensus 176 ~~~~~~k~CP~C~~~i~k~ 194 (263)
+ ..+.||.|+..+.++
T Consensus 111 -~--~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 -K--NANTCPTCRKKINHK 126 (133)
T ss_dssp -H--HCSBCTTTCCBCCGG
T ss_pred -H--cCCCCCCCCCcCChh
Confidence 1 136899999998764
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.92 E-value=2e-09 Score=84.55 Aligned_cols=86 Identities=23% Similarity=0.424 Sum_probs=60.9
Q ss_pred CCCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChhhHHHH
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKW 96 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 96 (263)
.-.+.+.|+||++.+.++. .++|||+||..|+..|+.... ..||. |+..+...++. ....++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv----~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~~~-- 75 (170)
T 3hcs_A 14 PLESKYECPICLMALREAV----QTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAK-- 75 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHH--
T ss_pred CCCCCCCCCCCChhhcCcE----ECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhhhh---hhHHHH--
Confidence 3456799999999997662 378999999999999997532 38999 99988775433 212111
Q ss_pred HHHHHHHhhcCCCcccCCccccccceecccc
Q 024715 97 CDVLCEDYVLGFERSYCPNTNCMALVVNECE 127 (263)
Q Consensus 97 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 127 (263)
+. +. .-.++||+.+|...+.....
T Consensus 76 -~~-----i~-~l~v~C~n~GC~~~~~~~~l 99 (170)
T 3hcs_A 76 -RE-----IL-SLMVKCPNEGCLHKMELRHL 99 (170)
T ss_dssp -HH-----HH-TSEEECCSTTCCCEEEGGGH
T ss_pred -HH-----Hh-hcccCCCCCCCCceecHhHH
Confidence 11 11 23478999999988876553
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=75.67 Aligned_cols=66 Identities=17% Similarity=0.452 Sum_probs=50.2
Q ss_pred CCCCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCC
Q 024715 16 GGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVI 88 (263)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l 88 (263)
....+..+|+||++.+.+.+.....++|+|.||.+|+..|+... .....||. |+..+....+..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTSE
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHHH
Confidence 33456789999999997643223457999999999999999853 23578999 99988877665544
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.3e-09 Score=71.86 Aligned_cols=56 Identities=25% Similarity=0.554 Sum_probs=44.9
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
..+...|+||++.+.++. .++|+|.||.+|+..|+.. ......||. |+..+..+++
T Consensus 17 ~~~~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV----TIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE----ECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeE----EcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCcccC
Confidence 456789999999996542 3699999999999999861 235678999 9999887665
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=1.7e-09 Score=70.90 Aligned_cols=60 Identities=18% Similarity=0.413 Sum_probs=45.7
Q ss_pred Cccccccccc-cccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCC
Q 024715 20 SSFTCEICIE-PMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVI 88 (263)
Q Consensus 20 ~~~~C~IC~~-~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l 88 (263)
+...|+||++ .+.++......++|||.||.+|+.+|+.. ....||. |+..+..++++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceeec
Confidence 4578999999 66555332234799999999999999862 2468999 99999887776544
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=68.35 Aligned_cols=59 Identities=22% Similarity=0.435 Sum_probs=46.8
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCC
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIP 89 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~ 89 (263)
..+.+.|+||++.+.++.. +.+|+|.||..|+..|+.. ...||. |+..+...++...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~~ 70 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATT---ITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSGPS 70 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEE---CSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCCCS
T ss_pred cCCCCCCCCCChHHHCcCE---ECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccccccCC
Confidence 3567899999999965432 3599999999999999974 357999 999998877665543
No 11
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-08 Score=70.24 Aligned_cols=60 Identities=27% Similarity=0.608 Sum_probs=48.3
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (263)
..+.+.|+||++.+.++. .++|+|.||.+|+..|+...... .....||. |+..+..+++.
T Consensus 16 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL----SLDCGHSFCQACLTANHKKSMLD--KGESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB----CCSSSCCBCTTHHHHHHHHHHHT--TSCCCCTT--TCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCCce----eCCCCCHHHHHHHHHHHHHhhcC--CCCCcCCC--CCCccCHHhcC
Confidence 356789999999996542 47999999999999999987654 34689999 99988876544
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=67.07 Aligned_cols=53 Identities=23% Similarity=0.669 Sum_probs=43.1
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
.+.+.|+||++.+.++. .++|||.||..|+..|+. .....||. |+..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK----QTECGHRFCESCMAALLS-------SSSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCC----CCSSSCCCCHHHHHHHHT-------TSSCCCTT--TCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCee----ECCCCCHHHHHHHHHHHH-------hCcCCCCC--CCcCCChhhc
Confidence 56789999999986552 379999999999999996 23467999 9999877654
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.74 E-value=1.4e-08 Score=69.88 Aligned_cols=60 Identities=25% Similarity=0.517 Sum_probs=47.5
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (263)
..+.+.|+||++.+.++. .++|+|.||..|+..|+...... .....||. |+..+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNT--DGKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCT--TSCBCCTT--TCCCCCTTCCE
T ss_pred CccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCC--CCCCCCCC--CCCcCCHHhCC
Confidence 356789999999996653 47899999999999999876532 34689999 99988776543
No 14
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=1.3e-08 Score=69.12 Aligned_cols=57 Identities=19% Similarity=0.425 Sum_probs=41.9
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
.+..+|+||++++...+..+..++|||.||..|+..++.. ....||. |+..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 4568999999988533332222459999999999988741 3578999 9998876544
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.9e-08 Score=65.27 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=36.7
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCC
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (263)
..+.+.|+||++.+.++. .++|||.||..|+.+|+... .....||.
T Consensus 17 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPV----TIDCGHNFCLKCITQIGETS-----CGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCSSCE----ECTTSSEECHHHHHHHHHHC-----SSCCCCSC
T ss_pred CccCCCCCcCCchhCCeE----EeCCCCcchHHHHHHHHHcC-----CCCCcCcC
Confidence 456789999999997553 36999999999999999841 24568987
No 16
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.72 E-value=4.7e-09 Score=77.01 Aligned_cols=84 Identities=29% Similarity=0.549 Sum_probs=59.9
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChhhHHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKWCD 98 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 98 (263)
.+.+.|+||++.+.++. .++|||.||..|+..|+... ...||. |+..+...++...+. .+.+
T Consensus 21 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~~-----~l~~ 82 (116)
T 1rmd_A 21 VKSISCQICEHILADPV----ETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPVK-----SFLN 82 (116)
T ss_dssp HHHTBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCCH-----HHHH
T ss_pred cCCCCCCCCCcHhcCcE----EcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccHH-----HHHH
Confidence 34689999999996653 37999999999999999852 357999 999998876654311 1222
Q ss_pred HHHHHhhcCCCcccCCccccccceeccc
Q 024715 99 VLCEDYVLGFERSYCPNTNCMALVVNEC 126 (263)
Q Consensus 99 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 126 (263)
.+. .-.++||+.+|+..+...+
T Consensus 83 ~i~------~l~v~C~~~gC~~~~~~~~ 104 (116)
T 1rmd_A 83 ILN------SLMVKCPAQDCNEEVSLEK 104 (116)
T ss_dssp HHH------HCEEECCSTTCCCEEEHHH
T ss_pred HHH------HhcCCCCCCCCcchhhHhH
Confidence 221 2236899989988776544
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.70 E-value=1e-08 Score=68.23 Aligned_cols=59 Identities=20% Similarity=0.667 Sum_probs=46.1
Q ss_pred CCccccccccccccccc---cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccC
Q 024715 19 GSSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (263)
.+...|+||++.+.++. .....++|+|.||.+|+..|+... ..||. |+..+...++..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheeec
Confidence 56789999999986541 222358999999999999999732 47999 9999988776654
No 18
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=2.4e-08 Score=72.57 Aligned_cols=73 Identities=22% Similarity=0.588 Sum_probs=53.4
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCC-ChhhHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVI-PASLFSKWC 97 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l-~~~~~~~~~ 97 (263)
.+.+.|+||++.+.++. .++|||.||..|+..|+... .....||. |+..+....+.... -.++++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPV----STKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCC----BCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeE----ECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHH
Confidence 35679999999986542 37999999999999998732 23478999 99998887665433 235666666
Q ss_pred HHHHH
Q 024715 98 DVLCE 102 (263)
Q Consensus 98 ~~~~~ 102 (263)
+.+..
T Consensus 88 ~~~~~ 92 (112)
T 1jm7_A 88 KIICA 92 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 19
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.69 E-value=9e-09 Score=64.90 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=41.2
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccC
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (263)
.....|+||++.+.+.......++|+|.||.+|+..|+... ..||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 45678999999986543333568999999999999999843 57999 988764
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.68 E-value=2.5e-08 Score=67.66 Aligned_cols=67 Identities=19% Similarity=0.422 Sum_probs=49.1
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccc-cCCChhhHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE-PVIPASLFSKWC 97 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~ 97 (263)
.+.+.|+||++.+.++. .++|||+||..|+..|+.. ....||. |+..+....+. ...-.+.++.|.
T Consensus 6 ~~~~~C~IC~~~~~~Pv----~~~CgH~fc~~Ci~~~~~~-------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV----IVSTGQTYERSSIQKWLDA-------GHKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSEE----EETTTEEEEHHHHHHHHTT-------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCCE----EcCCCCeecHHHHHHHHHH-------CcCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 45789999999997663 3689999999999999961 2568999 99988765443 233334555554
Q ss_pred H
Q 024715 98 D 98 (263)
Q Consensus 98 ~ 98 (263)
+
T Consensus 73 ~ 73 (78)
T 1t1h_A 73 E 73 (78)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.66 E-value=3.8e-09 Score=71.90 Aligned_cols=60 Identities=25% Similarity=0.486 Sum_probs=46.3
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (263)
.+.++|+||++.+.++. .++|||.||.+|+..|+...... ......||. |+..+...++.
T Consensus 10 ~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL----SLDCGHSLCRACITVSNKEAVTS-MGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCC----CCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSS--SCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCee----ECCCCCHHHHHHHHHHHHhcccC-CCCCCcCCC--CCCcCCHhhCC
Confidence 46789999999996542 47999999999999998754332 234789999 99988765543
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=67.82 Aligned_cols=54 Identities=22% Similarity=0.522 Sum_probs=41.9
Q ss_pred cCCCCCccccccccccccccccccccCC-CCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccC
Q 024715 15 KGGGGSSFTCEICIEPMAASKKFKNRNL-CTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (263)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (263)
.....+.+.|+||++.+.++. .++ |+|.||..|+..|+... ....||. |+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~----~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAV----VIPCCGNSYCDECIRTALLES------DEHTCPT--CHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCE----ECSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCe----EcCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcCC
Confidence 333456799999999997653 367 99999999999999842 2468999 998643
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=70.73 Aligned_cols=49 Identities=24% Similarity=0.641 Sum_probs=40.1
Q ss_pred CCccccccccccccccccccccCC-CCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCcc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNL-CTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNL 79 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 79 (263)
.+.+.|+||++.+.++. .++ |||+||..|+..|+.. .....||. |+..+
T Consensus 11 ~~~~~C~IC~~~~~~p~----~~~~CgH~fC~~Ci~~~~~~------~~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAV----VIPCCGNSYCDECIRTALLE------SDEHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCE----ECTTTCCEECHHHHHHHHHH------CTTCCCTT--TCCSS
T ss_pred CcCCCCCCCChhhcCce----ECCCCCCHHHHHHHHHHHHh------cCCCcCcC--CCCcC
Confidence 46789999999997653 367 9999999999999973 22478999 99886
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=65.87 Aligned_cols=58 Identities=21% Similarity=0.664 Sum_probs=45.2
Q ss_pred Cccccccccccccccc---cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccC
Q 024715 20 SSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (263)
+..+|+||++.+.++. .....++|+|.||.+|+..|+.. ...||. |+..+...++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceeee
Confidence 4678999999986541 12235899999999999999974 248999 9999988776654
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.64 E-value=6.4e-08 Score=71.16 Aligned_cols=86 Identities=23% Similarity=0.424 Sum_probs=60.5
Q ss_pred CCCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChhhHHHH
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKW 96 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 96 (263)
.-.+.+.|+||++.+.++. .++|||.||..|+..|+...- ..||. |+..+...++. ....++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~l~-- 75 (118)
T 3hct_A 14 PLESKYECPICLMALREAV----QTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAK-- 75 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHH--
T ss_pred CCCCCCCCCcCChhhcCeE----ECCcCChhhHHHHHHHHhhCC-------CCCCC--CCCCcCHHhcc---cCHHHH--
Confidence 3456789999999997652 368999999999999997442 27999 99988775432 212111
Q ss_pred HHHHHHHhhcCCCcccCCccccccceecccc
Q 024715 97 CDVLCEDYVLGFERSYCPNTNCMALVVNECE 127 (263)
Q Consensus 97 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 127 (263)
+. +. .-.++||+.+|...+...+.
T Consensus 76 -~~-----i~-~l~v~C~n~gC~~~~~~~~l 99 (118)
T 3hct_A 76 -RE-----IL-SLMVKCPNEGCLHKMELRHL 99 (118)
T ss_dssp -HH-----HH-TSEEECSSTTCCCEEEGGGS
T ss_pred -HH-----Hc-cceeECCCCCCCCEEeeHHH
Confidence 11 11 23478999899988876554
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=2.6e-08 Score=65.72 Aligned_cols=54 Identities=20% Similarity=0.678 Sum_probs=41.9
Q ss_pred CCCccccccccccccccc---cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 18 GGSSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
..+...|+||++.+.++. .....++|+|.||.+|+..|+.. ...||. |+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccCc
Confidence 456789999999986542 12235899999999999999974 247999 9988754
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.60 E-value=5.1e-08 Score=69.51 Aligned_cols=57 Identities=25% Similarity=0.631 Sum_probs=45.5
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccC
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (263)
.+.+.|+||++.+.++.. .++|||.||..|+..|+... ...||. |+..+....+...
T Consensus 20 ~~~~~C~IC~~~~~~p~~---~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARL---CPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEEC
T ss_pred CCCCCCccCCccccCccc---cCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhh
Confidence 467899999999965522 38999999999999999843 268999 9999987665543
No 28
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.59 E-value=2.1e-08 Score=68.08 Aligned_cols=58 Identities=26% Similarity=0.610 Sum_probs=45.1
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (263)
......|+||++.+...... ..++|+|.||..|+..|+.. ...||. |+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCcccCC
Confidence 45678999999999665443 34789999999999999852 247999 999888765543
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.59 E-value=4.4e-09 Score=79.87 Aligned_cols=91 Identities=18% Similarity=0.353 Sum_probs=59.1
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChh-hH-HH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPAS-LF-SK 95 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~-~~-~~ 95 (263)
-.+.+.|+||++.+.++. .++|||.||..|+..|+. .....||. |+..+.......+++.+ ++ +.
T Consensus 28 l~~~~~C~IC~~~~~~pv----~~~CgH~FC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~ 94 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPF----QAQCGHRYCSFCLASILS-------SGPQNCAA--CVHEGIYEEGISILESSSAFPDN 94 (141)
T ss_dssp CCGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHGG-------GSCEECHH--HHHTTCCCTTTTEECGGGCEECH
T ss_pred CCcCcCCCCCChhhcCcE----ECCCCCccCHHHHHHHHh-------cCCCCCCC--CCCcccccccccccchhhhcccH
Confidence 456789999999997663 379999999999999985 23468998 98876554333222211 10 11
Q ss_pred HHHHHHHHhhcCCCcccCCccccccceeccc
Q 024715 96 WCDVLCEDYVLGFERSYCPNTNCMALVVNEC 126 (263)
Q Consensus 96 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 126 (263)
..+ ..+. .-.++||+.+|...+....
T Consensus 95 ~~~----~~i~-~L~v~Cpn~GC~~~~~l~~ 120 (141)
T 3knv_A 95 AAR----REVE-SLPAVCPSDGCTWKGTLKE 120 (141)
T ss_dssp HHH----HHHH-TSEEECCSTTCCCEEEHHH
T ss_pred HHH----HHHc-ccccccCCCCCCCEeEHHH
Confidence 111 1111 3347999988988776544
No 30
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.58 E-value=7e-08 Score=63.77 Aligned_cols=54 Identities=22% Similarity=0.638 Sum_probs=41.7
Q ss_pred CCCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.......|+||++.+...... ..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 345678999999998544333 358899999999999999742 25999 9988765
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.5e-08 Score=66.41 Aligned_cols=56 Identities=18% Similarity=0.404 Sum_probs=44.3
Q ss_pred CCCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccccc
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (263)
...+...|+||++.+.++. .++|+|.||..|+..|+.. ...||. |+..+....+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPV----SLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEE----EETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHSC
T ss_pred cCCCCCCCccCCcccCCCE----EccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhccC
Confidence 3456789999999986542 3689999999999998751 268999 999988766554
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=9.8e-08 Score=65.19 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=40.7
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccC
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (263)
....+.|+||++.+.++. .++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV----VTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCCcCCCchhcCee----EccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 456789999999996542 4899999999999999973 347999 999886
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.51 E-value=4.8e-08 Score=69.45 Aligned_cols=68 Identities=22% Similarity=0.483 Sum_probs=47.8
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccccc-CCChhhHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP-VIPASLFSKWC 97 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~-~l~~~~~~~~~ 97 (263)
.+.+.|+||++.+.++.. ..+|||.||..|+..|+.. ...||. |+..+....+.. ..-.++++.|.
T Consensus 20 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMI---IPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHHTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCE---ECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHH
Confidence 456899999999976532 3589999999999999862 258999 999988754432 22223444444
Q ss_pred HH
Q 024715 98 DV 99 (263)
Q Consensus 98 ~~ 99 (263)
+.
T Consensus 87 ~~ 88 (99)
T 2y43_A 87 FA 88 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.9e-07 Score=65.73 Aligned_cols=61 Identities=34% Similarity=0.673 Sum_probs=47.5
Q ss_pred CCCccccccccccccccccccccC-CCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCc-cCcccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHN-LDPFAC 84 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-l~~~~i 84 (263)
..+.+.|+||++.+.++.. + .|||+||+.|+..|+...-. ......||..+|... +...++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~----~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK----NKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE----ESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCGGGE
T ss_pred CCcEeECcCcCchhcCCEE----cCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCHhhC
Confidence 3567899999999987743 5 59999999999999986532 134678999999977 766544
No 35
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=9.7e-08 Score=63.98 Aligned_cols=53 Identities=21% Similarity=0.586 Sum_probs=41.4
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
......|+||++.+.....+ ..++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCCC--cCccccc
Confidence 35567999999999765443 346899999999999999742 27999 9987654
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-07 Score=59.85 Aligned_cols=46 Identities=26% Similarity=0.618 Sum_probs=35.8
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCC
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (263)
..+...|+||++.+.++ ..++|+|.||.+|+..|+.. ......||.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWED-----LERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTS-----SCCSCCCSC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHh-----cCCCCCCCC
Confidence 35678999999999665 24799999999999999752 124567887
No 37
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=8.2e-08 Score=64.56 Aligned_cols=53 Identities=19% Similarity=0.625 Sum_probs=42.1
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
..+...|+||++++...+.+ ..++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 45678999999999665443 357899999999999998632 37999 9988765
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.44 E-value=5.9e-08 Score=61.06 Aligned_cols=52 Identities=17% Similarity=0.593 Sum_probs=39.0
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccC
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (263)
.+..+|+||++++...+....+..|+|.||.+|+..|+.. ...||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 3567899999999765443323349999999999999742 347999 988764
No 39
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-07 Score=77.82 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=53.5
Q ss_pred CCcccccCCCCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccc
Q 024715 9 PNEYLEKGGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (263)
++..+........+.|+||++.+.++.. ...|||.||+.|+..|+.. .....||..||+..+...++.
T Consensus 169 dDDDI~v~~~~~el~CPIcl~~f~DPVt---s~~CGHsFcR~cI~~~~~~------~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 169 DEDDLQIEGGKIELTCPITCKPYEAPLI---SRKCNHVFDRDGIQNYLQG------YTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CSSCCCCCSSBCCSBCTTTSSBCSSEEE---ESSSCCEEEHHHHHHHSTT------CSCEECSGGGCSCEECGGGEE
T ss_pred CCccceecCCceeeECcCccCcccCCee---eCCCCCcccHHHHHHHHHh------CCCCCCCcccccCcCchhhCC
Confidence 4445556666788999999999987743 3689999999999999862 235789999999988776543
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.41 E-value=1.8e-07 Score=69.28 Aligned_cols=50 Identities=28% Similarity=0.776 Sum_probs=41.0
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.+.+.|+||++.+.++. .++|||.||..|+..|+. .....||. |+..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPI----TTVCQHNVCKDCLDRSFR-------AQVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEE----ECTTSCEEEHHHHHHHHH-------TTCCBCTT--TCCBCCT
T ss_pred ccCCCCCcCChHHcCcE----EeeCCCcccHHHHHHHHh-------HCcCCCCC--CCccCCC
Confidence 34578999999997653 369999999999999997 23468999 9998876
No 41
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.38 E-value=2.8e-07 Score=67.17 Aligned_cols=58 Identities=22% Similarity=0.500 Sum_probs=42.4
Q ss_pred CCccccccccccccccc--------------cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASK--------------KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.....|+||++++..+. .....++|+|.||..||..|+...-. .....||. |+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQCPS--CKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCBCTT--TCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCcCCC--CCCccCC
Confidence 34569999999986542 12225889999999999999954321 24578999 9987754
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=7.4e-08 Score=60.99 Aligned_cols=48 Identities=19% Similarity=0.493 Sum_probs=38.4
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
+.+.+.|+||++.+.++ ..++|+|.||..|+.. ....||. |+..+...
T Consensus 3 e~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSCC
T ss_pred cccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCc--CCcEeecC
Confidence 35678999999999765 3589999999999876 2568999 99887653
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.35 E-value=9e-07 Score=60.98 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=43.1
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
.+.+.|+||++.+.++. .++|||+||+.|+..|+.. ...||. |+..+....+
T Consensus 12 p~~~~CpI~~~~m~dPV----~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV----RLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGC
T ss_pred chheECcccCchhcCCe----ECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHhc
Confidence 46899999999998774 3779999999999999973 247999 9998876543
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.31 E-value=9e-07 Score=67.75 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=41.7
Q ss_pred CccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 20 SSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
+.+.|+||++.+.++. .++|+|.||..|+..|+.. ....||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~~pv----~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV----TTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE----ECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCCE----EcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 4579999999997653 3799999999999999972 3468999 99998775
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.29 E-value=3.1e-07 Score=64.22 Aligned_cols=52 Identities=25% Similarity=0.629 Sum_probs=40.6
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.....|+||++.+...+.. ..++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 4567899999998654433 35789999999999999851 237999 9988764
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=6.4e-08 Score=64.14 Aligned_cols=51 Identities=27% Similarity=0.626 Sum_probs=40.6
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
..+...|+||++.+.+ ..++|+|.||..|+..|+. ....||. |+..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcccCCC
Confidence 3567899999999865 2489999999999999875 2467998 988776544
No 47
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.25 E-value=3.6e-07 Score=68.98 Aligned_cols=48 Identities=31% Similarity=0.823 Sum_probs=38.7
Q ss_pred ccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
.++|+||++.+.++. .++|||.||..|+..|+. ....||. |+..+...
T Consensus 53 ~~~C~iC~~~~~~~~----~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAV----TLNCAHSFCSYCINEWMK--------RKIECPI--CRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEE----EETTSCEEEHHHHHHHTT--------TCSBCTT--TCCBCCCE
T ss_pred cCCCcccCcccCCce----ECCCCCCccHHHHHHHHH--------cCCcCCC--CCCcCCCC
Confidence 468999999996652 479999999999999975 2357999 99887653
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.24 E-value=1.7e-07 Score=68.46 Aligned_cols=51 Identities=25% Similarity=0.684 Sum_probs=40.9
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
..+.+.|+||++.+.++. .++|||.||..|+..|+. .....||. |+..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~----~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPV----TLPCNHTLCKPCFQSTVE-------KASLCCPF--CRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCE----ECTTSCEECHHHHCCCCC-------TTTSBCTT--TCCBCHH
T ss_pred CCCCCCCccCCcccCcee----EcCCCCHHhHHHHHHHHh-------HCcCCCCC--CCcccCc
Confidence 345789999999996553 369999999999998875 23478999 9998764
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.24 E-value=1.4e-06 Score=61.75 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=42.4
Q ss_pred CCccccccccccccccccccccCCCC-CccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCT-HPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
.+.+.|+||++.+.++. .++|| |+||+.|+..|+.. ...||. |+..+...+
T Consensus 20 p~~~~CpI~~~~m~dPV----~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV----VLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSEE----ECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTT
T ss_pred cHhcCCcCccccccCCe----ECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhh
Confidence 46799999999998774 37899 99999999999972 247999 999887653
No 50
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.23 E-value=1e-06 Score=63.49 Aligned_cols=51 Identities=25% Similarity=0.656 Sum_probs=41.2
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
.+.+.|+||++.+.++.. +.+|||.||..|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEE---ETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSCSS
T ss_pred CCcCCCccCChHHhCcCE---eCCCCChhhHHHHHHHHHh--------CCcCcC--CCcccccc
Confidence 567899999999976532 3599999999999999862 268999 99887753
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.21 E-value=5.5e-07 Score=59.15 Aligned_cols=50 Identities=32% Similarity=0.697 Sum_probs=39.3
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.....|+||++.+.++. ..++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~---~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS---MALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCE---EETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCCC
T ss_pred CCCCCCeeCCccccCCc---EecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhHh
Confidence 34578999999986532 248899999999999998631 47999 9988763
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=2.2e-07 Score=68.18 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=40.7
Q ss_pred CCccccccccccccccccccccC-CCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
.+.+.|+||++.+.++. .+ +|||.||..|+..|+. ..||. |+..+....+
T Consensus 20 ~~~~~C~IC~~~~~~pv----~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~~~ 70 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPV----CLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQDL 70 (117)
T ss_dssp HHTTSCSSSCSCCSSCB----CCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCSSC
T ss_pred hhCCCCCCCChHhhCcc----EeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccccc
Confidence 45789999999997653 35 9999999999999875 57999 9998865444
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.21 E-value=9.1e-07 Score=68.82 Aligned_cols=51 Identities=29% Similarity=0.804 Sum_probs=40.6
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.+.+.|+||++.+.++.. +.+|||.||..|+..|+.. ....||. |+..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMT---TKECLHRFCADCIITALRS-------GNKECPT--CRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEE---ETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCS
T ss_pred CCCCCCcccChHhhCcCE---eCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCCC
Confidence 345799999999976532 3599999999999999972 2467999 9998754
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.16 E-value=1.7e-06 Score=61.51 Aligned_cols=51 Identities=12% Similarity=-0.013 Sum_probs=42.2
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
.+.+.|+||++.+.++.. ++|||+||+.|+..|+.. ...||. |+..+...+
T Consensus 27 p~~~~CpI~~~~m~dPV~----~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVR----LPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSSEEE----ETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTTS
T ss_pred cHhhCCcCccCcccCCeE----CCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChhh
Confidence 457999999999987743 679999999999999962 257999 999887643
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1e-06 Score=60.06 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=41.0
Q ss_pred CCcccccccccccccc-----------ccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 19 GSSFTCEICIEPMAAS-----------KKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~-----------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
.+..+|.||++++.+. +....+.+|+|.|+.+|+..|+.. .-.||. |+..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~~~~~~~ 79 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--------NNRCPL--CQQDWVVQRI 79 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--------CCBCTT--TCCBCCEEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--------CCCCCC--cCCCcchhhc
Confidence 4567799999988542 212234569999999999999862 138999 9998877554
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.00 E-value=3.6e-06 Score=62.65 Aligned_cols=60 Identities=22% Similarity=0.693 Sum_probs=46.1
Q ss_pred CCCccccccccccccccc---cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccC
Q 024715 18 GGSSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (263)
+.+...|+||++.+..+. .....++|+|.||..|+..|+.. ...||. |+..+..+++..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCC--CCCcCChhcceee
Confidence 456789999999986531 11135789999999999999973 237999 9999988776543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.91 E-value=8.9e-07 Score=59.31 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=36.4
Q ss_pred CCccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.+...|.||++.+.+. ..++|||. ||.+|+..+ ..||. |+..+..
T Consensus 22 ~~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPM--CYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTT--TCCBCSE
T ss_pred ccCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCC--cCcCccC
Confidence 4567999999998554 24799999 999998765 57999 9988765
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=2.9e-06 Score=56.93 Aligned_cols=45 Identities=24% Similarity=0.500 Sum_probs=35.5
Q ss_pred CCccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.+...|+||++.+.++ ..++|+|. ||.+|+.. ...||. |+..+..
T Consensus 23 ~~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 4567899999998544 34899999 99999952 157999 9988765
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.89 E-value=7.6e-06 Score=58.66 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=40.9
Q ss_pred CCccccccccccccccc--------------cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 19 GSSFTCEICIEPMAASK--------------KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
.+...|.||++.+...- .....++|+|.|+..|+..|+.. ...||. |+..+.+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~~~ 103 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEFQK 103 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCEEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcceeec
Confidence 34568999999986441 01234789999999999999862 357999 999876543
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=8.8e-06 Score=55.21 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=42.8
Q ss_pred CCccccccccccccccccccccCCCC-----CccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCT-----HPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
.+...|.||++++.+.+.+ .++|. |.|..+||.+|+... ....||. |+..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeeecCc
Confidence 4567899999998655444 47885 999999999999854 2468999 998876643
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.79 E-value=1.3e-05 Score=67.33 Aligned_cols=53 Identities=13% Similarity=-0.036 Sum_probs=42.5
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
....+.|+||++.+.++. .++|||+||+.|+..|+... ...||. |+.++....
T Consensus 205 ~~~~~~c~i~~~~~~dPv----~~~~gh~f~~~~i~~~~~~~-------~~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPC----ITPSGITYDRKDIEEHLQRV-------GHFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSEE----ECSSCCEEETTHHHHHHHHT-------CSSCTT--TCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCCe----ECCCCCEECHHHHHHHHHHC-------CCCCcC--CCCCCchhc
Confidence 346789999999998774 37899999999999999731 123999 999987654
No 62
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.76 E-value=1.8e-05 Score=54.52 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=35.6
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCceecccCccc---CCCC
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKI---SSGC 220 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~---~~~~ 220 (263)
+.+-||+|...+....+-..++| .|++.||+.|+.+| |.+-
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTS
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCC
Confidence 44569999999988888888999 59999999999999 7663
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=1.5e-05 Score=52.23 Aligned_cols=47 Identities=21% Similarity=0.567 Sum_probs=36.6
Q ss_pred CCCCccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.+.+...|.||++...+. .+++|+|. ||.+|+.. + ..||. |+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~-----~-------~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY-----F-------QQCPM--CRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH-----C-------SSCTT--TCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc-----C-------CCCCC--CCcchhc
Confidence 345678999999987543 35899999 99999983 1 47999 9988765
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.70 E-value=2.5e-05 Score=61.20 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=42.4
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (263)
.+.+.|+||++.+.++. .++|||+||+.|+..|+... .. .||. |+.++...+
T Consensus 104 p~~f~CPI~~elm~DPV----~~~~Ghtfer~~I~~~l~~~------~~-tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMREPC----ITPSGITYDRKDIEEHLQRV------GH-FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHT------CS-BCTT--TCCBCCGGG
T ss_pred cHhhcccCccccCCCCe----ECCCCCEECHHHHHHHHHhC------CC-CCCC--CcCCCChhh
Confidence 56799999999998774 37899999999999999741 11 6999 999887654
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.68 E-value=2.3e-05 Score=50.60 Aligned_cols=51 Identities=20% Similarity=0.411 Sum_probs=38.3
Q ss_pred CCccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.....|.||++...+... ..++|||. ||.+|...+... .-.||. |+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~--~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNI--IHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEE--EETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCCE
T ss_pred CcCCCCcccCCcCCCeEE--EecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhhc
Confidence 446789999998754432 23599998 999999988752 247999 9998753
No 66
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.67 E-value=2.2e-05 Score=50.79 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=37.9
Q ss_pred CCccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
.+...|.||++...+.. + ..++|||. +|.+|+..+... .-.||. |+..+..
T Consensus 6 ~~~~~C~IC~~~~~~~~-~-~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC-I-VHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEE-E-EETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCCE
T ss_pred CCcCCCCcCCCCCCCEE-E-ECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchhc
Confidence 35568999999885542 1 12499999 899999988751 237999 9988753
No 67
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.62 E-value=2.9e-05 Score=52.58 Aligned_cols=42 Identities=29% Similarity=0.660 Sum_probs=37.7
Q ss_pred CcccCCC--CCceeecCCCCceeEe------ecCCceecccCcccCCCCCC
Q 024715 180 KWARCPA--CGHCVERKDGCSVVMC------RCNTRFCYECGRKISSGCSC 222 (263)
Q Consensus 180 ~~k~CP~--C~~~i~k~~GCnhm~C------~C~~~FC~~C~~~~~~~~~~ 222 (263)
..+-||. |+..|....+...++| .|++.||+.|+..||. .+.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C 73 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GEC 73 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccc
Confidence 4788998 9999999889999999 7999999999999997 544
No 68
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.59 E-value=5.3e-05 Score=66.26 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=41.2
Q ss_pred CccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccc
Q 024715 20 SSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (263)
....|+||++.+.++ ..++|||.||..|+..|+.. ....||. |+..+....+
T Consensus 331 ~~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEEEE
T ss_pred CCCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCcee
Confidence 347999999998654 24899999999999999873 2357999 9998877543
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.42 E-value=9e-06 Score=55.05 Aligned_cols=46 Identities=26% Similarity=0.689 Sum_probs=36.0
Q ss_pred CCccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
.+...|.||++...+. ..++|||. ||.+|+..+ ..||. |+..+...
T Consensus 16 ~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCEE
T ss_pred CCCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc------------CcCCC--CCchhhCe
Confidence 3456899999988543 24899999 999999754 18999 99987663
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=0.00015 Score=48.18 Aligned_cols=53 Identities=23% Similarity=0.507 Sum_probs=41.1
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
+...+|.||++.+...+. ...|+|.|...|+.+|++. ...-+||. |+..+..+
T Consensus 13 ~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~------~~~~~CP~--Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTT------CSSCCCTT--TCSCCCSC
T ss_pred CCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHh------cCCCCCCC--CcCcCCCC
Confidence 456799999999965433 3489999999999999962 22357999 99887643
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.33 E-value=3.7e-05 Score=55.92 Aligned_cols=53 Identities=21% Similarity=0.425 Sum_probs=0.9
Q ss_pred Cccccccccccccccc--------------cccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 20 SSFTCEICIEPMAASK--------------KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
..-.|.||++++.... ..+..++|+|.|+..|+..|+.. ...||. |+..+...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEFQ 113 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeeeee
Confidence 4468999999996421 11123589999999999999874 246999 99877543
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.10 E-value=0.00044 Score=59.06 Aligned_cols=62 Identities=16% Similarity=0.416 Sum_probs=45.2
Q ss_pred CCCcccccccccccccccccc----ccCCCCCccHHHHHHHHHHHHhhCCCC---cccccCCCCCCCccCc
Q 024715 18 GGSSFTCEICIEPMAASKKFK----NRNLCTHPFCQDCIARYIQVKVQDDNT---AKIDCPGLDCKHNLDP 81 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~~~~---~~i~CP~~~C~~~l~~ 81 (263)
+....+|.||++.+.+...++ ....|+|.|...|+.+|+.+.-..+.. ..=.||. |+++++-
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 456789999999987633322 124799999999999999987653222 2247999 9998764
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.47 E-value=0.00043 Score=59.90 Aligned_cols=44 Identities=25% Similarity=0.649 Sum_probs=35.9
Q ss_pred CccccccccccccccccccccCCCCCc-cHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 20 SSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
+...|+||++.+.++ ..++|||. ||..|+..+ ..||. |+..+..
T Consensus 294 ~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL------------RKCPI--CRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC------------SBCTT--TCCBCCE
T ss_pred CCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC------------CcCCC--CCCCccC
Confidence 457999999998654 24799999 999999855 47999 9988764
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.36 E-value=0.0031 Score=39.90 Aligned_cols=52 Identities=15% Similarity=0.401 Sum_probs=38.1
Q ss_pred CCCccccccccccccccccccccCCCC--C---ccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCT--H---PFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
+.+...|-||+++..+ .+ .++|. + .|..+||.+|+...- ...||. |+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~--~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--ER--FRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSC--CC--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCCC
T ss_pred CCCCCEeEEeecCCCC--ce--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeeec
Confidence 4566789999988532 23 36654 4 899999999997542 368999 9987754
No 75
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.27 E-value=0.003 Score=39.98 Aligned_cols=40 Identities=28% Similarity=0.751 Sum_probs=34.6
Q ss_pred CCcccCCccccccceeccccccCCCCceeCCc--cccccccccccCCC
Q 024715 108 FERSYCPNTNCMALVVNECERSGKVKKTQCPN--CKQWFCFQCKLKWH 153 (263)
Q Consensus 108 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~H 153 (263)
.+.+.|| .|+..+...+. -+.++|.. |+..||+.|..+|.
T Consensus 4 ~~~k~CP--~C~~~Iek~~G----CnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGG----CNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCS----CCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECc--CCCCeeEeCCC----CCcEEECCCCcCCEEeeCcCCCcc
Confidence 4567899 89999988766 78999988 99999999999873
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.20 E-value=0.0031 Score=40.06 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=40.5
Q ss_pred ccccccccccccccccccccC-CCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccccc
Q 024715 21 SFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (263)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (263)
.+.|+|+++.+.++. .. ++||.|++.++.+|+... . +||. .+..+...++..
T Consensus 3 ~~~CpIs~~~m~dPV----~~~~sG~~yer~~I~~~l~~~--~------~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPV----LSPKSRTIFEKSLLEQYVKDT--G------NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEE----EETTTTEEEEHHHHHHHHHHH--S------BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCE----EeCCCCcEEcHHHHHHHHHhC--C------CCcC--CcCCCChhhcEE
Confidence 478999999998763 35 899999999999999842 1 3998 778887766543
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.05 E-value=0.019 Score=39.82 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=34.8
Q ss_pred ccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCc
Q 024715 23 TCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (263)
Q Consensus 23 ~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (263)
-|.+|--++..- -.+.+|.|.||.+|...|.... .-.||. |+..+..
T Consensus 3 fC~~C~~Pi~iy---gRmIPCkHvFCydCa~~~~~~~-------~k~Cp~--C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVY---GRMIPCKHVFCYDCAILHEKKG-------DKMCPG--CSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEE---EEEETTCCEEEHHHHHHHHHTT-------CCBCTT--TCCBCSE
T ss_pred ecCccCCCeEEE---eeeccccccHHHHHHHHHHhcc-------CCCCcC--cCCeeee
Confidence 578887777432 2358999999999999998733 235888 9887654
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.52 E-value=0.031 Score=39.01 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCceeCCcccccccccccc-CCCCCCC
Q 024715 132 VKKTQCPNCKQWFCFQCKL-KWHAGYR 157 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 157 (263)
...+.|..|+..+|..|.. ..|.+++
T Consensus 69 ~l~~fC~~~~~~iC~~C~~~~~H~~H~ 95 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKLVGRHRDHQ 95 (101)
T ss_dssp CCCEEETTTTEEECHHHHHHTTTSSSC
T ss_pred cceEECCCCCCccchhcCCCCCcCCCC
Confidence 4688999999999999987 6888775
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.16 E-value=0.22 Score=32.76 Aligned_cols=51 Identities=25% Similarity=0.627 Sum_probs=37.8
Q ss_pred CCCcccccccccccccccccccc-CCCCCccHHHHHHHHHHHHhhCCCCcccccCC
Q 024715 18 GGSSFTCEICIEPMAASKKFKNR-NLCTHPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (263)
....+.|.+|-+.+.+. .|+.. ..=.|.||..|-+.+++.+-. ...+.||.
T Consensus 12 ~~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q~~---~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQGA---TGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHHHS---SSCCCCTT
T ss_pred CCCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhcCC---CCcEECCC
Confidence 46789999999998654 33222 123799999999999999864 35677775
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.85 E-value=0.089 Score=42.91 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=41.5
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
+....|.||.+.+..... ...|+|.|...|+..|+. ......||. |+..++.+
T Consensus 178 ~~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~------~~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQ------SNAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTT------TCSSCBCTT--TCCBCCSC
T ss_pred CCCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHH------hCCCCCCCC--CCCCCCCC
Confidence 357899999999965432 345999999999999986 234578998 99988765
No 81
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=85.94 E-value=0.32 Score=29.90 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=20.3
Q ss_pred cccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 181 WARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 181 ~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
.+.||.|+..+.-...-+.++| +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4789999985543333468999 699875
No 82
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=85.65 E-value=0.57 Score=31.11 Aligned_cols=33 Identities=30% Similarity=0.952 Sum_probs=19.8
Q ss_pred ccCCCCCceeecCCCCceeEe-ecCCc-----eecccCccc
Q 024715 182 ARCPACGHCVERKDGCSVVMC-RCNTR-----FCYECGRKI 216 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C-~C~~~-----FC~~C~~~~ 216 (263)
..||.|+..++.+++ +..| .|+.. ||-.|+++.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 457777777766666 4456 46532 566666664
No 83
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.84 E-value=0.38 Score=28.92 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=19.1
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
..+.||.|+..+.-...=+...| +||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 45789999984433322377889 688643
No 84
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=83.41 E-value=0.79 Score=33.65 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=26.6
Q ss_pred hcCCCcccCCccccccceeccccccCCCCceeCCcccccc
Q 024715 105 VLGFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (263)
Q Consensus 105 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (263)
.......+|| .|++.+......+.....+.|..|++..
T Consensus 19 ~~~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 19 SHMTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp ---CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3446779999 8999998876543335678898888754
No 85
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=83.01 E-value=1.2 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=21.1
Q ss_pred cccCCCCCc-eeecCCCCceeEe-ecCCce
Q 024715 181 WARCPACGH-CVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 181 ~k~CP~C~~-~i~k~~GCnhm~C-~C~~~F 208 (263)
...||.|+. .+.-+..=..+.| .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 467999988 7766666667899 588755
No 86
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.30 E-value=1.6 Score=27.51 Aligned_cols=39 Identities=33% Similarity=0.681 Sum_probs=30.8
Q ss_pred CcccCCCCCceeecCCCCceeEeecCCceecccCcccCCCCCC
Q 024715 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSC 222 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~~~ 222 (263)
...+|..|+..+... -+.|+|+..||..=.-+-.+.|+.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~e~H~C~f 52 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCRCGTTFCGSHRYPEVHGCTF 52 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECSSSCEECTTTCSTTTTTCCC
T ss_pred cCCcChhhCCccCcc----CEEeecCCEeccccCCcccCCCCc
Confidence 457899999988766 388999999999877776666653
No 87
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.25 E-value=1 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=20.9
Q ss_pred CcccCCccccccceeccccccCCCCceeCCcccccc
Q 024715 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (263)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (263)
...+|| .|+......+. .....|+.|+.++
T Consensus 18 ~~k~CP--~CG~~~fm~~~----~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCP--RCGPGVFMADH----GDRWACGKCGYTE 47 (50)
T ss_dssp SSEECS--SSCSSCEEEEC----SSEEECSSSCCEE
T ss_pred ecccCC--CCCCceEEecC----CCeEECCCCCCEE
Confidence 468899 79875444433 4688999998653
No 88
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=80.85 E-value=0.63 Score=31.19 Aligned_cols=30 Identities=27% Similarity=0.720 Sum_probs=24.7
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCcee
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRFC 209 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~FC 209 (263)
....||+|+....+..+=..+.| .|++.|-
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 34689999999988877778999 5988774
No 89
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.12 E-value=4.5 Score=27.17 Aligned_cols=53 Identities=26% Similarity=0.587 Sum_probs=38.9
Q ss_pred CCcccccccccccccc---ccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccC
Q 024715 19 GSSFTCEICIEPMAAS---KKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (263)
.....|.||-+++... +.|.....|+-.+|+.|+..-.. ...-.||. |+..+.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-------eG~q~Cpq--CktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-------EGTQNCPQ--CKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-------TSCSSCTT--TCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-------ccCccccc--cCCccc
Confidence 4557999999997543 35666677999999999876554 23457998 887654
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.18 E-value=3.5 Score=27.71 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCceeCCccccccccccccCCCCCCCchhHHhccccchHHHHHHHhcCCcccCCCCCceeecCCCC
Q 024715 132 VKKTQCPNCKQWFCFQCKLKWHAGYRCEESRNLRDQNDIVFGQLVERMKWARCPACGHCVERKDGC 197 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i~k~~GC 197 (263)
...+.|..|++..|..| .+ +......+.||.|+.++.+.-|.
T Consensus 33 e~FVAC~eC~FPvCrpC----------yE--------------YErkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 33 DLFVACNECGFPACRPC----------YE--------------YERREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SBCCSCSSSCCCCCHHH----------HH--------------HHHHTSCSSCTTTCCCCCCCTTC
T ss_pred CEEEeeeccCChhhHHH----------HH--------------HHHhccCccccccCCccccccCC
Confidence 57889999999888754 33 23345778999999999865554
No 91
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=78.93 E-value=0.48 Score=32.77 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=25.3
Q ss_pred ccCCCCCceeecCCCCceeEe-ecCCceecccCcccC
Q 024715 182 ARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKIS 217 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~ 217 (263)
-.||-|...+. +-+++ .||+.||+.|...|-
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWL 54 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHH
Confidence 57999998886 35777 699999999998873
No 92
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.13 E-value=2.3 Score=27.58 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=29.8
Q ss_pred cccCCCCCceeecCCCCceeEeecCCceecccCcccCCCCCC
Q 024715 181 WARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSC 222 (263)
Q Consensus 181 ~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~~~ 222 (263)
..+|..|+..+...+ +.|+|+..||-.=.-+-.+.|+.
T Consensus 25 ~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~e~H~C~f 62 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCRCGNLFCGLHRYSDKHNCPY 62 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECTTSCEECSSSCSTTTTTCCC
T ss_pred CCcChhhCCcccccC----eecCCCCEechhcCCCccCCCcc
Confidence 458999999988764 89999999998766665566643
No 93
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.00 E-value=2.3 Score=26.82 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=30.3
Q ss_pred CcccCCCCCceeecCCCCceeEeecCCceecccCcccCCCCCC
Q 024715 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSC 222 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~~~ 222 (263)
...+|..|+..+... -+.|+|+..||-.=.-+-.+.|+.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~e~H~C~f 52 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRYPEKHECSF 52 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCSSTTTTCCC
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCCccccCCCc
Confidence 346899999987765 388999999998877776666653
No 94
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.33 E-value=2 Score=29.37 Aligned_cols=34 Identities=26% Similarity=0.916 Sum_probs=28.4
Q ss_pred ccCCCCCceeecCCCCceeEe-ecCCc-----eecccCcccC
Q 024715 182 ARCPACGHCVERKDGCSVVMC-RCNTR-----FCYECGRKIS 217 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C-~C~~~-----FC~~C~~~~~ 217 (263)
..||.|+..++.++| +.+| .|+.. ||-.|+++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHH
Confidence 799999999999888 7779 59865 6888988853
No 95
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=74.15 E-value=2.2 Score=27.27 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=23.5
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
..-.||.|+..++-..+...+.| .|+..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45689999999988888888888 587665
No 96
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=71.99 E-value=1.8 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=25.4
Q ss_pred cccCCccccccceeccccccCCCCceeCCcccccccc
Q 024715 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (263)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (263)
...||++.|+..+.-+.. ..+..|..|++++++
T Consensus 118 ~~~c~~~~cg~g~fma~h----~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH----KDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC----SSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEeccc----CCCcccCCCceEEEe
Confidence 478999889886655554 458899999988875
No 97
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.72 E-value=2.7 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=25.3
Q ss_pred CcccCCccccccceeccccccCCCCceeCCcccccc
Q 024715 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (263)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (263)
...+|| .|++.+......++....+.|..|++.+
T Consensus 3 ~m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 357899 8999998776533335689999998755
No 98
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.06 E-value=1.3 Score=29.42 Aligned_cols=36 Identities=19% Similarity=0.491 Sum_probs=24.7
Q ss_pred cccCCCCCceeecCCCCceeEeecCCceecccCcccC
Q 024715 181 WARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (263)
Q Consensus 181 ~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~ 217 (263)
...||-|...+.....- -+.-.||+.||+.|...|-
T Consensus 15 ~~~C~IC~~~~~~~~~~-~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 15 VLECPICMESFTEEQLR-PKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CCBCTTTCCBCCTTSSC-EEECSSSCEEEHHHHHHHH
T ss_pred CCCCccCCccccccCCC-eEECCCCChhhHHHHHHHH
Confidence 45799998877654211 2333689999999988863
No 99
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.81 E-value=3.1 Score=28.32 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=35.0
Q ss_pred CCccccccccccccccccccccCCC-CCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcc
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLC-THPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (263)
-..+-|..|+-.... +..| .|++|..||..+++ ..-.||. |+..|...
T Consensus 26 ~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~--------~SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLS--------VSNRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCS--------SSSEETT--TTEECCCC
T ss_pred cCcccChhhccccCC------eeeecchhhHHHHHHHHHh--------hccCCcc--cCCcCCcc
Confidence 445789999877632 2445 69999999988774 3447999 99887654
No 100
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.28 E-value=4.8 Score=26.08 Aligned_cols=39 Identities=28% Similarity=0.568 Sum_probs=30.0
Q ss_pred CcccCCCCCceeecCCCCceeEeecCCceecccCcccCCCCCC
Q 024715 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSC 222 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~~~ 222 (263)
...+|..|+..+... -+.|+|+..||-.=.-+-.|.|+.
T Consensus 24 ~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy~e~H~C~f 62 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT----GFKCRCGSTFCGTHRYPESHECQF 62 (74)
T ss_dssp CCCBCSSSCCBCTTT----CEECTTSCEECTTTCSTTTSCCCS
T ss_pred cCccchhhcCccccc----ceEeccCCEeccccCCCcCCCCcC
Confidence 457899999888776 389999999998766665566643
No 101
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=66.40 E-value=4 Score=26.88 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=15.9
Q ss_pred ccccCCCCCCCccCcc-ccccCCCh
Q 024715 67 KIDCPGLDCKHNLDPF-ACEPVIPA 90 (263)
Q Consensus 67 ~i~CP~~~C~~~l~~~-~i~~~l~~ 90 (263)
--+||. |+++++.+ .|.+.|.-
T Consensus 8 ~~~~Pl--CG~~L~W~eLIeQML~~ 30 (95)
T 2k5c_A 8 MAKCPI--CGSPLKWEELIEEMLII 30 (95)
T ss_dssp CEECSS--SCCEECHHHHHHHSTTC
T ss_pred cccCCc--CCCccCHHHHHHHHHhh
Confidence 358999 99999875 45566654
No 102
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.12 E-value=3.6 Score=29.57 Aligned_cols=34 Identities=12% Similarity=0.374 Sum_probs=24.9
Q ss_pred CcccCCccccccceeccccccCCCCceeCCcccccc
Q 024715 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (263)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (263)
...+|| .|++.+......+.....+.|..|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 457899 8999998765422235688999998755
No 103
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=64.70 E-value=3.2 Score=30.38 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHhcCCcccCCCCCceeecC----CCCceeEe-ecCCce
Q 024715 175 LVERMKWARCPACGHCVERK----DGCSVVMC-RCNTRF 208 (263)
Q Consensus 175 ~~~~~~~k~CP~C~~~i~k~----~GCnhm~C-~C~~~F 208 (263)
-......+-||.|+.++... .+.+.+.| .|++.+
T Consensus 18 ~~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 18 GSHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp ----CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CccccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 33445679999999987433 35788999 499976
No 104
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.22 E-value=5 Score=26.77 Aligned_cols=40 Identities=25% Similarity=0.603 Sum_probs=29.9
Q ss_pred CcccCCCCCceeecCCCCceeEeecCCceecccCcccCCCCCC
Q 024715 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSC 222 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~~~ 222 (263)
...+|..|+..+-.. +-+.|+|+..||-.=.-+-.|.|+.
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFECRCGNNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEECTTCCEECTTTCSTGGGTCCS
T ss_pred cCccchhhCCeeccc---CCeEcCCCCEecccCCCccCCCCcc
Confidence 446899999887654 2389999999998766665566653
No 105
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=63.45 E-value=3.3 Score=27.56 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=27.4
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
+.+...|.+|...|.....--..-.||..||.+|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4567799999999965433334577999999998654
No 106
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.40 E-value=8.4 Score=25.12 Aligned_cols=63 Identities=19% Similarity=0.435 Sum_probs=42.0
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCcccccc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (263)
+.+...| ||-.+..+...++....|...|...|+.-.-.... ......||. |.....+..++.
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~--C~~~~~~~~~K~ 71 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPD--CEAVFGPSIMKN 71 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTT--TTTTSCSCBCCC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCC--cccccCCCceee
Confidence 4566788 89887754455556678999999999875433322 235688998 987655544443
No 107
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=62.78 E-value=2.3 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.644 Sum_probs=24.7
Q ss_pred ccCCCCCceeecCCCCceeEe-ecCCceecccCcccC
Q 024715 182 ARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKIS 217 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~ 217 (263)
-.||-|...+.. -++. .||+.||+.|...|-
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITAL 86 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHH
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHH
Confidence 479999887763 5677 799999999988863
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=61.75 E-value=2.6 Score=27.94 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=27.0
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
+.+...|.+|...|.....--..-.||..||.+|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4556789999999964433234577999999998754
No 109
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=61.25 E-value=4 Score=30.53 Aligned_cols=30 Identities=20% Similarity=0.531 Sum_probs=23.2
Q ss_pred cccCCC--CCceeecCCCCceeEe-ecCCceec
Q 024715 181 WARCPA--CGHCVERKDGCSVVMC-RCNTRFCY 210 (263)
Q Consensus 181 ~k~CP~--C~~~i~k~~GCnhm~C-~C~~~FC~ 210 (263)
-+.||+ |+.-+.-..-=|..+| +|++-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 378999 9997765544468899 79998876
No 110
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.02 E-value=4.8 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=21.9
Q ss_pred cccCCCCCceeecC----CCCceeEe-ecCCce
Q 024715 181 WARCPACGHCVERK----DGCSVVMC-RCNTRF 208 (263)
Q Consensus 181 ~k~CP~C~~~i~k~----~GCnhm~C-~C~~~F 208 (263)
.+-||.|+.++... .+.+.+.| .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46799999987544 35788999 599877
No 111
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.50 E-value=2.8 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=27.5
Q ss_pred CCCccccccccccccccccccccCCC-CCccHHHHHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLC-THPFCQDCIARYIQ 57 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~ 57 (263)
+.+...|.||.++-. + ..+.| +-.||..||+..-.
T Consensus 5 ~ee~pWC~ICneDAt----l-rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----L-RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCC----E-EETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCe----E-EecCCCCceehHHHHHHHcc
Confidence 456789999999852 2 25788 78999999998873
No 112
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=59.15 E-value=5.7 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=20.4
Q ss_pred cccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 181 WARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 181 ~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
.-.||.|+..++-..+=..+.| .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4579999998887665566788 476554
No 113
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=58.82 E-value=6.3 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=21.6
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
..-.||.|+..++-..+=..+.| .|+..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 45689999999887766567888 477655
No 114
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=58.80 E-value=3.3 Score=30.13 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=31.5
Q ss_pred cccCCCCCCC---ccCccccccCCChhhHHHHHHHHHHHhhcCCCcccCCccccccceecc
Q 024715 68 IDCPGLDCKH---NLDPFACEPVIPASLFSKWCDVLCEDYVLGFERSYCPNTNCMALVVNE 125 (263)
Q Consensus 68 i~CP~~~C~~---~l~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 125 (263)
+.||. |+. .+....++++|.++.++ +...++..|++++|...+...
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~ 50 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNE 50 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECS
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECC
Confidence 36998 885 46666677777655433 333567899999998766643
No 115
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=57.83 E-value=6.8 Score=25.04 Aligned_cols=29 Identities=10% Similarity=0.301 Sum_probs=20.9
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
..-.||.|+..++-..+=..+.| .|+..|
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 34689999998886655566788 476554
No 116
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=57.14 E-value=3 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.518 Sum_probs=24.2
Q ss_pred ccCCCCCceeecCCCCceeEeecCCceecccCcccCC
Q 024715 182 ARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISS 218 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~ 218 (263)
-.||-|.-.+.. -++-.||+.||+.|...|-.
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHH
Confidence 369999887742 35557999999999888753
No 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=56.71 E-value=2.7 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=21.8
Q ss_pred ccCCCCCceeecCCCCceeEeecCCceecccCcccC
Q 024715 182 ARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~ 217 (263)
-.||-|...+.. -++-.||+.||..|...|-
T Consensus 53 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 53 FQCICCQELVFR-----PITTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCChHHcC-----cEEeeCCCcccHHHHHHHH
Confidence 479999887752 3333688888888877653
No 118
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.55 E-value=3.4 Score=27.47 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=26.1
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (263)
+.+...|.+|...|.....--..-.||..||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 456678999999995443323457799999998844
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.00 E-value=3.3 Score=28.00 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=26.2
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
.+...|.+|...|.....-.....||..||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 445689999999964433334577999999999654
No 120
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=55.87 E-value=7.1 Score=37.16 Aligned_cols=60 Identities=23% Similarity=0.535 Sum_probs=41.7
Q ss_pred CCcccccccccccccccc------ccccCCCC--------------------CccHHHHHHHHHHHHhhCCCCcccccCC
Q 024715 19 GSSFTCEICIEPMAASKK------FKNRNLCT--------------------HPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~------~~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (263)
-...+|+-|+.++.++.. |+....|| -.+|.+|.++|-.-.-+.=+..++.||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 445799999999876654 33445565 2479999999976443322456899999
Q ss_pred CCCCCccC
Q 024715 73 LDCKHNLD 80 (263)
Q Consensus 73 ~~C~~~l~ 80 (263)
|+-.+.
T Consensus 189 --CGP~l~ 194 (761)
T 3vth_A 189 --CGPSLS 194 (761)
T ss_dssp --TSCCEE
T ss_pred --cCCeeE
Confidence 986553
No 121
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=55.85 E-value=5.9 Score=28.39 Aligned_cols=30 Identities=13% Similarity=0.383 Sum_probs=23.0
Q ss_pred CcccCCCCCceeecC----CCCceeEe-ecCCcee
Q 024715 180 KWARCPACGHCVERK----DGCSVVMC-RCNTRFC 209 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~----~GCnhm~C-~C~~~FC 209 (263)
..+-||.|+.++.-. .+-+.+.| .|++.+=
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 457899999987633 66788999 5998763
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.79 E-value=3.3 Score=29.92 Aligned_cols=37 Identities=19% Similarity=0.511 Sum_probs=26.7
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARY 55 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 55 (263)
.+...|.+|...|.....--..-.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4556899999999643332345789999999997543
No 123
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=55.60 E-value=2.5 Score=31.17 Aligned_cols=32 Identities=28% Similarity=0.624 Sum_probs=24.8
Q ss_pred cccCCCCCceeecCCCCceeEeecCCceecccCcccC
Q 024715 181 WARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (263)
Q Consensus 181 ~k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~ 217 (263)
.-.||-|...+.. -++..||+.||+.|...|-
T Consensus 31 ~~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~ 62 (141)
T 3knv_A 31 KYLCSACRNVLRR-----PFQAQCGHRYCSFCLASIL 62 (141)
T ss_dssp GGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHG
T ss_pred CcCCCCCChhhcC-----cEECCCCCccCHHHHHHHH
Confidence 3579999987753 3556799999999988875
No 124
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=53.90 E-value=8.1 Score=25.69 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=22.3
Q ss_pred CcccCCccccccceeccccccCCCCceeCCcccccccc
Q 024715 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (263)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (263)
....|| .|+........ ...+.|+.|+..|--
T Consensus 26 ~~y~Cp--~CG~~~v~r~a----tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQG----TGIWQCSYCDYKFTG 57 (83)
T ss_dssp SCEECS--SSCCEEEEEEE----TTEEEETTTCCEEEC
T ss_pred ccCcCC--CCCCcceeccC----CCeEECCCCCCEecC
Confidence 456799 78876655444 467889888876653
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.82 E-value=3.5 Score=25.55 Aligned_cols=36 Identities=22% Similarity=0.671 Sum_probs=25.7
Q ss_pred ccCCccccccceeccccccCCCCceeCCccccccccccccCCCCC
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAG 155 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~ 155 (263)
..|- .|...+.. ...+.|+.|+..||..|..-.|..
T Consensus 16 ~~C~--~C~~~~~~-------~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCY--GCQGELKD-------QHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEET--TTTEECTT-------SEEECCTTTTCCBCHHHHHTTTTT
T ss_pred Cccc--ccCcccCC-------CccEECCccCcCcccchhHHHHhh
Confidence 3465 67666531 224789999999999998877764
No 126
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.69 E-value=2.7 Score=22.91 Aligned_cols=18 Identities=17% Similarity=0.728 Sum_probs=14.1
Q ss_pred CCcccccccccccccccc
Q 024715 19 GSSFTCEICIEPMAASKK 36 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~ 36 (263)
.+.+.|++|+..+...+.
T Consensus 3 ~EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSADE 20 (34)
T ss_dssp SEEEECTTTCCEESSHHH
T ss_pred CcccCCcHHHHHcCCHHH
Confidence 456999999999866544
No 127
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=52.71 E-value=7.3 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCccccccccccccccccccccC-CCCCccHHHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARY 55 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~ 55 (263)
+.+...|.+|..++.+...++... .|.-.|...|+.--
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT 43 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCC
Confidence 456678999999986665665566 89999999998643
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.38 E-value=5.1 Score=26.95 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=25.5
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
.+...|.+|...|.....--....||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 455689999999864433234577999999988643
No 129
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.38 E-value=4.6 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=23.6
Q ss_pred cccccccccccccccccccCCCCCccHHHHHH
Q 024715 22 FTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (263)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (263)
..|.+|...|.....--..-.||..||.+|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999986443323456799999999864
No 130
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.90 E-value=6.3 Score=30.63 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=19.4
Q ss_pred cccCCCCCceee-cCCCCceeEe-ecCCceec
Q 024715 181 WARCPACGHCVE-RKDGCSVVMC-RCNTRFCY 210 (263)
Q Consensus 181 ~k~CP~C~~~i~-k~~GCnhm~C-~C~~~FC~ 210 (263)
-+.||+|+..+. ....+.| +| +|++-|.|
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 378999997643 3334444 88 78887754
No 131
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=49.76 E-value=10 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=21.1
Q ss_pred CcccCCCCCceeecCCCCceeEe-ecCCce
Q 024715 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C-~C~~~F 208 (263)
..-.||.|+..++-...=..+.| .|+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 45689999998887655566778 476555
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.68 E-value=7.5 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.792 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHHHhhC
Q 024715 46 PFCQDCIARYIQVKVQD 62 (263)
Q Consensus 46 ~fC~~Cl~~~~~~~i~~ 62 (263)
-||++||.+|+...-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999988765
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=49.12 E-value=7.7 Score=26.53 Aligned_cols=17 Identities=24% Similarity=0.927 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHHHHhhC
Q 024715 46 PFCQDCIARYIQVKVQD 62 (263)
Q Consensus 46 ~fC~~Cl~~~~~~~i~~ 62 (263)
-||++||.+|+..+-.+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999987664
No 134
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=49.00 E-value=14 Score=20.47 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCceeCCcccccccccccc-CCCCCCC
Q 024715 132 VKKTQCPNCKQWFCFQCKL-KWHAGYR 157 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 157 (263)
...+.|..++...|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 5688999999999999998 5787764
No 135
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.85 E-value=5.1 Score=24.93 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=25.5
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (263)
+.+...|+||..+..+...++....|...|...|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 456778999998875445555566787777777764
No 136
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=47.50 E-value=8 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=24.0
Q ss_pred ccCCccccccceeccccccCCCCceeCCcccccccc
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (263)
+.|| +|...-..-+.. ...|.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFShA---~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSNA---QSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETTC---SSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEecC---ccEEEccCCCCEEee
Confidence 5799 898877665543 578999999988874
No 137
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.38 E-value=9.9 Score=25.31 Aligned_cols=32 Identities=19% Similarity=0.567 Sum_probs=24.9
Q ss_pred ccCCccccccceeccccccCCCCceeCCccccccccc
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQ 147 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 147 (263)
+.|| +|...-..-... ...|.|..|+...|.-
T Consensus 37 VkCp--~C~~~~~VFShA---~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSHS---QTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EECT--TTCCEEEEETTC---SSCCCCSSSCCCCSCC
T ss_pred EECC--CCCCeeEEEecC---CcEEEccCCCCEeecC
Confidence 7899 898877665543 5789999999888853
No 138
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=46.00 E-value=13 Score=24.83 Aligned_cols=28 Identities=32% Similarity=0.801 Sum_probs=21.0
Q ss_pred cccCCCCCce------eecCCCCceeEee-cCCce
Q 024715 181 WARCPACGHC------VERKDGCSVVMCR-CNTRF 208 (263)
Q Consensus 181 ~k~CP~C~~~------i~k~~GCnhm~C~-C~~~F 208 (263)
.-.||.|+.. +.|..|=-++.|+ |+..|
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 4579999875 3456777788894 88877
No 139
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=45.90 E-value=6.4 Score=25.27 Aligned_cols=24 Identities=21% Similarity=0.594 Sum_probs=14.1
Q ss_pred ccCCCCCceeecCCCCceeEee-cCC
Q 024715 182 ARCPACGHCVERKDGCSVVMCR-CNT 206 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C~-C~~ 206 (263)
-.|+.|+..++...+ +-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 457777777665533 345563 555
No 140
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.73 E-value=11 Score=23.60 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=25.4
Q ss_pred cccCCccccccceeccccccCCCCceeCCccccccccccccC
Q 024715 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLK 151 (263)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 151 (263)
...|..++|.... ...+.|..|+..||...+.+
T Consensus 12 ~~~Cs~~~Ck~~~---------ll~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 12 TNKCERAGCRQRE---------MMKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCCSTTCCCCC---------SSCCBCSSSCCBCCHHHHST
T ss_pred CCCCCccCCCCCC---------ccceECCCCCcccCcccCCc
Confidence 3578877787652 24679999999999988875
No 141
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=45.68 E-value=6.4 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCceeCCccccccccccccCCCCCCCc
Q 024715 132 VKKTQCPNCKQWFCFQCKLKWHAGYRC 158 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 158 (263)
...+.|..|+..+|..|....|.+++-
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCce
Confidence 578999999999999998888887753
No 142
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=45.64 E-value=4.5 Score=30.57 Aligned_cols=31 Identities=32% Similarity=0.682 Sum_probs=24.8
Q ss_pred ccCCCCCceeecCCCCceeEeecCCceecccCcccC
Q 024715 182 ARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~ 217 (263)
-.||-|...+.. -+++.||+.||..|...|-
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHH
Confidence 579999988753 3667899999999988864
No 143
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=44.30 E-value=7.1 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.626 Sum_probs=23.8
Q ss_pred ccCCccccccceeccccccCCCCceeCCcccccccc
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (263)
+.|| +|...-..-+.. ...|.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSha---~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSHA---QTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESBC---SSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEecC---CeEEEccccCCEEec
Confidence 6799 898877665543 578999999988874
No 144
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.22 E-value=14 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=16.1
Q ss_pred CcccCCCCCc-eeecCCCCceeEe-ecCCc
Q 024715 180 KWARCPACGH-CVERKDGCSVVMC-RCNTR 207 (263)
Q Consensus 180 ~~k~CP~C~~-~i~k~~GCnhm~C-~C~~~ 207 (263)
....||.|+. .|..+..=..+.| .||..
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 3457999976 4444433334677 46643
No 145
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.66 E-value=6.6 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=25.7
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYI 56 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 56 (263)
+.....|..|...|.....--....||..||..|....+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 345578999999996543333467899999999977654
No 146
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=43.56 E-value=9 Score=27.66 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCcccCCccccccceeccccccCCCCceeCCcccccc
Q 024715 108 FERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (263)
Q Consensus 108 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (263)
...-.|| .|+.-+.+++. ..+.||.|+..|
T Consensus 25 ~~lP~CP--~C~seytYeDg-----~l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCP--QCNSEYTYEDG-----ALLVCPECAHEW 54 (138)
T ss_dssp CCSCCCT--TTCCCCCEECS-----SSEEETTTTEEE
T ss_pred ccCCCCC--CCCCcceEecC-----CeEECCcccccc
Confidence 3456788 89888877765 578899888776
No 147
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.40 E-value=18 Score=24.20 Aligned_cols=33 Identities=21% Similarity=0.656 Sum_probs=25.9
Q ss_pred cccCCccccccceeccccccCCCCceeCCccccccccccccC
Q 024715 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLK 151 (263)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 151 (263)
...|..++|.... ...+.|..|+..||...+.+
T Consensus 25 ~~~C~~~~Ck~~~---------~l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 25 SYSCSFKGCTDVE---------LVAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp CEECCSTTCCCEE---------SSCEECTTTCCEECGGGCST
T ss_pred CCCCCCcCCCCCC---------ccceECCCCCcccccccCCc
Confidence 3568877887662 24689999999999998875
No 148
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=41.26 E-value=15 Score=23.10 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=23.6
Q ss_pred ccCCccccccceeccccccCCCCceeCCcccccccc
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (263)
+.|| +|...-..-+.. ...+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFShA---~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDHP---STIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEESSC---SSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEecC---ceEEEcccCCCEEee
Confidence 6788 898876665543 578999999988874
No 149
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.38 E-value=6.1 Score=25.09 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=26.9
Q ss_pred CcccCCCCCceeecCC--CCceeEeecCCceecccCcccCCCCC
Q 024715 180 KWARCPACGHCVERKD--GCSVVMCRCNTRFCYECGRKISSGCS 221 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~--GCnhm~C~C~~~FC~~C~~~~~~~~~ 221 (263)
...+|-.|+..+...+ | +.|+|+..||..=.-+-.|.|.
T Consensus 14 ~~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~HRy~e~H~C~ 54 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQEL---GSCRCGYVFCMLHRLPEQHDCT 54 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHH---HCCSSSCCCCTTTCSTGGGTCS
T ss_pred cCCcchhhCCeecccccCc---eEecCCCEehhccCCccccCCc
Confidence 3468888888776431 1 5789999999876655555554
No 150
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=40.27 E-value=20 Score=21.74 Aligned_cols=27 Identities=30% Similarity=0.844 Sum_probs=18.7
Q ss_pred CcccCCCCCceeecCCCCceeEee---cCCce
Q 024715 180 KWARCPACGHCVERKDGCSVVMCR---CNTRF 208 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C~---C~~~F 208 (263)
..-.||.|+..++-.. ..+.|. |+..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 3468999999887666 566664 55443
No 151
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=38.98 E-value=29 Score=21.44 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.7
Q ss_pred cccCCCCCCCccCccccccCCChhhHHHHHHHHHHHhh
Q 024715 68 IDCPGLDCKHNLDPFACEPVIPASLFSKWCDVLCEDYV 105 (263)
Q Consensus 68 i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~~~~~~ 105 (263)
-.||. |+.......-..+-++|-+.+|...+.+.+.
T Consensus 19 ~~CP~--CG~~T~~~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 19 EICPK--CGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp SBCSS--SCSBCBCCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred ccCcC--CCCcCCCCCCCCCCCCcchHHHHHHHHHHhc
Confidence 35888 9988777777777777889999988777654
No 152
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.18 E-value=7.8 Score=28.30 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCcccccccccccccc-ccccccCCCCCccHHHHH
Q 024715 19 GSSFTCEICIEPMAAS-KKFKNRNLCTHPFCQDCI 52 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~fC~~Cl 52 (263)
.....|.+|..++.-. ..-.....|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 5678999999998421 111235678888888764
No 153
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.30 E-value=20 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=23.7
Q ss_pred ccCCccccccceeccccccCCCCceeCCcccccccc
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (263)
+.|| +|...-..-+.. ...+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFSha---~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSHP---ATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESSC---SSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEecC---CeEEEccCcCCEEec
Confidence 6799 898876665443 578999999988874
No 154
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=36.87 E-value=6.8 Score=29.72 Aligned_cols=79 Identities=18% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChhhHHHHH
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKWC 97 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~ 97 (263)
+.+...| +|.....+...++....|...|...|+.-.-.... ......||. |...-.......-|+.+.++...
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~---~~~~~~C~~--C~~~~~~~~~~~~l~~~~~~~l~ 78 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAE---LIDEYVCPQ--CQSTEDAMTVLTPLTEKDYEGLK 78 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHT---TCSSCCCHH--HHHHHHHHTTTSBCCHHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhcc---CccCeecCC--CcchhccccccccCCHHHHHHHH
Confidence 3567889 99887644445555678999999999853222111 234577887 86432222233445656666655
Q ss_pred HHHHH
Q 024715 98 DVLCE 102 (263)
Q Consensus 98 ~~~~~ 102 (263)
..+..
T Consensus 79 ~il~~ 83 (174)
T 2ri7_A 79 RVLRS 83 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 155
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=36.51 E-value=17 Score=27.81 Aligned_cols=24 Identities=25% Similarity=0.697 Sum_probs=20.4
Q ss_pred ccCCCCCceeecCCCCceeEe-ecCCc
Q 024715 182 ARCPACGHCVERKDGCSVVMC-RCNTR 207 (263)
Q Consensus 182 k~CP~C~~~i~k~~GCnhm~C-~C~~~ 207 (263)
-.|+.|+.+..+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 47999999998876 99999 69864
No 156
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=36.49 E-value=11 Score=21.72 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCceeCCccccccccccc-cCCCCCCC
Q 024715 132 VKKTQCPNCKQWFCFQCK-LKWHAGYR 157 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~-~~~H~~~~ 157 (263)
...+.|..|+...|..|. ...|.+++
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCc
Confidence 467999999999999997 45787765
No 157
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=32.88 E-value=5 Score=31.06 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=44.8
Q ss_pred ccccccccccccccc---ccccCCCCCccHHHHHHHHHH--HHhhC-CCCcccccCCCCCCCccCccccccCCChhhHHH
Q 024715 22 FTCEICIEPMAASKK---FKNRNLCTHPFCQDCIARYIQ--VKVQD-DNTAKIDCPGLDCKHNLDPFACEPVIPASLFSK 95 (263)
Q Consensus 22 ~~C~IC~~~~~~~~~---~~~~~~C~H~fC~~Cl~~~~~--~~i~~-~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~ 95 (263)
..|+||...+.+.+. ++....|...|...|..-.-. ..+++ .......||. |...-+. ..+..+..++.+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~-~~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPA-EWRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSC-HHHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCH-HHHHHHHHHHHHH
Confidence 469999988866542 556678998888888853221 12210 0013578998 8866443 2444444455454
Q ss_pred HHHHHH
Q 024715 96 WCDVLC 101 (263)
Q Consensus 96 ~~~~~~ 101 (263)
+.+.+.
T Consensus 80 l~~vl~ 85 (183)
T 3lqh_A 80 LKQVLT 85 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 158
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.61 E-value=27 Score=26.19 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=35.0
Q ss_pred CCCCCccccccccccccccccccccC--CCCCccHHHHHHHHHHH----HhhCCCCcccccCCCCCCCc
Q 024715 16 GGGGSSFTCEICIEPMAASKKFKNRN--LCTHPFCQDCIARYIQV----KVQDDNTAKIDCPGLDCKHN 78 (263)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~~----~i~~~~~~~i~CP~~~C~~~ 78 (263)
.++.....|.||.+.- .++... +|...||.+|+...+.. .+.. ..+-.|-. |.-.
T Consensus 74 DeDG~~~yC~wC~~Gg----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~--~d~W~Cy~--C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGR----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIK--EDPWNCYM--CGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCCS----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHT--SSSCCCTT--TCSS
T ss_pred CCCCCcceeeEecCCC----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhc--cCCCEEEe--cCCc
Confidence 3345678999999754 222234 69999999999987543 2222 34556666 6643
No 159
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.49 E-value=53 Score=24.06 Aligned_cols=54 Identities=24% Similarity=0.573 Sum_probs=35.2
Q ss_pred CCCCccccccccccccccccccccCCCCCccHHHHHHHHHH----HHhhCCCCcccccCCCCCCC
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQ----VKVQDDNTAKIDCPGLDCKH 77 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i~~~~~~~i~CP~~~C~~ 77 (263)
++.....|.+|.+.-. +.....|...||..|+...+. ..+.. ...+-.||. |..
T Consensus 59 ~Dg~~d~C~vC~~GG~----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~-p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRKELSTIMD-ENNQWYCYI--CHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSS----EEECSSSCCEEEHHHHHHHTCHHHHHHHHT-STTCCCCTT--TCC
T ss_pred CCCCCCeecccCCCCc----EEeCCCCCCeeeHhhcCCCCChhhhhhccc-CCCCCEeec--ccC
Confidence 3455678999987652 334568999999999997663 22211 123456888 764
No 160
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=32.32 E-value=19 Score=23.05 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=6.2
Q ss_pred CcccCCCCCceee
Q 024715 180 KWARCPACGHCVE 192 (263)
Q Consensus 180 ~~k~CP~C~~~i~ 192 (263)
.|++|| ||..++
T Consensus 20 kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 20 KTRKCV-CGRTVN 31 (71)
T ss_dssp SEEEET-TTEEEE
T ss_pred cEEECC-CCCeee
Confidence 445555 555543
No 161
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=32.19 E-value=16 Score=21.53 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCceeCCcccccccccccc-CCCCCCC
Q 024715 132 VKKTQCPNCKQWFCFQCKL-KWHAGYR 157 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 157 (263)
...+.|..|+..+|..|.. ..|.+++
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSC
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCc
Confidence 5788999999999999987 6788775
No 162
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.49 E-value=78 Score=22.76 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=33.9
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHH-----HHHhhCCCCcccccCCCCCCC
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYI-----QVKVQDDNTAKIDCPGLDCKH 77 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~-----~~~i~~~~~~~i~CP~~~C~~ 77 (263)
+.....|.||.+.-. +.....|...||.+|+...+ ...++. ..+-.|+. |..
T Consensus 54 Dg~~~~C~vC~dGG~----LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~--~~~W~C~~--C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRRELSTIMDE--NNQWYCYI--CHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSE----EEECSSSSCEEEHHHHHHHTCHHHHHHHTCT--TSCCCCTT--TCC
T ss_pred CCCCCcCeecCCCCe----eEecCCCchhhhHHHhCCCcchhHHHHhccC--CCCeEcCC--cCC
Confidence 445567999997642 22356799999999999773 333221 34566777 643
No 163
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=30.36 E-value=23 Score=28.94 Aligned_cols=25 Identities=44% Similarity=1.011 Sum_probs=19.3
Q ss_pred ccCCCCCceeecC--CCCceeEe-ecCC
Q 024715 182 ARCPACGHCVERK--DGCSVVMC-RCNT 206 (263)
Q Consensus 182 k~CP~C~~~i~k~--~GCnhm~C-~C~~ 206 (263)
++||.|+.+|++. +|=+-.+| .|..
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 7899999999876 77666677 4653
No 164
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.13 E-value=1.2e+02 Score=20.14 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=49.6
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCccCccccccCCChhhHHHHHH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKWCD 98 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 98 (263)
...+.|.+|-..|.... =|..++.... ...++.|+. |+..+... ..+ ..
T Consensus 5 ~~~~~C~~C~~~f~~~~---------------~l~~H~~~h~---~~~~~~C~~--C~~~f~~~--------~~l---~~ 53 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSKY---------------YLKVHNRKHT---GEKPFECPK--CGKCYFRK--------ENL---LE 53 (124)
T ss_dssp CSSCCCTTTCCCCSSHH---------------HHHHHHHHHS---SCCSCBCTT--TCCBCSSH--------HHH---HH
T ss_pred CCCCCCCCCCCcCCCHH---------------HHHHHHHhCC---CCCCeECCC--CCchhcCH--------HHH---HH
Confidence 45688999988875432 2444444332 245788988 88765431 111 11
Q ss_pred HHHHHhh-cCCCcccCCccccccceeccccc------cCCCCceeCCccccccc
Q 024715 99 VLCEDYV-LGFERSYCPNTNCMALVVNECER------SGKVKKTQCPNCKQWFC 145 (263)
Q Consensus 99 ~~~~~~~-~~~~~~~Cp~~~C~~~~~~~~~~------~~~~~~~~C~~C~~~~C 145 (263)
=+..... .......|+ .|+..+...... ......+.|+.|++.|=
T Consensus 54 H~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 54 HEARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp HHHHCCCCSCCCCEECS--SSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEES
T ss_pred HHhhhhcCCCCCCeECC--CCCCccCCHHHHHHHHHHcCCCCCccCCCccchhC
Confidence 1111101 123346787 688776543221 11245688888876653
No 165
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=29.77 E-value=15 Score=23.29 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=11.1
Q ss_pred CCcccCCCCCceee
Q 024715 179 MKWARCPACGHCVE 192 (263)
Q Consensus 179 ~~~k~CP~C~~~i~ 192 (263)
...+.||.|+.+++
T Consensus 7 ~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 7 TITVNCPTCGKTVV 20 (68)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCcCcCCCCCCccc
Confidence 35678999999886
No 166
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=29.38 E-value=21 Score=29.28 Aligned_cols=25 Identities=24% Similarity=0.793 Sum_probs=19.2
Q ss_pred ccCCCCCceeecC--CCCceeEe-ecCC
Q 024715 182 ARCPACGHCVERK--DGCSVVMC-RCNT 206 (263)
Q Consensus 182 k~CP~C~~~i~k~--~GCnhm~C-~C~~ 206 (263)
++||.|+.+|++. +|=.-.+| .|..
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 7899999999876 66666667 4653
No 167
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=29.27 E-value=16 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCceeCCccccccccccccCCCCCCCch
Q 024715 132 VKKTQCPNCKQWFCFQCKLKWHAGYRCE 159 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~~~H~~~~C~ 159 (263)
...+.|..|+..+|..|....|.+++-.
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~~ 54 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHSTV 54 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCEE
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCEe
Confidence 5689999999999999998888887643
No 168
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=29.17 E-value=44 Score=21.17 Aligned_cols=55 Identities=16% Similarity=0.434 Sum_probs=33.7
Q ss_pred CCCccccccccccccccccccccCCCCCccHHHHHHHHHHHHhhCCCCcccccCCCCCCCcc
Q 024715 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNL 79 (263)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 79 (263)
..+...|.||..... ...++....|.-.|...|+.--.. ........||. |...+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~----~~~~~~w~C~~--C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAA----PPEEMQWFCPK--CANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSC----CCSSSCCCCTT--THHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCcc----CCCCCCEEChh--ccCch
Confidence 455678999987763 334445567888899999863221 10113466877 75443
No 169
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=28.44 E-value=38 Score=22.33 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=13.7
Q ss_pred cccccccccCCCCCCCchh
Q 024715 142 QWFCFQCKLKWHAGYRCEE 160 (263)
Q Consensus 142 ~~~C~~C~~~~H~~~~C~~ 160 (263)
...|..|...-|....|.+
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG
T ss_pred cCCCCCCCCCCCccccCCC
Confidence 4578888888888777864
No 170
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=28.37 E-value=22 Score=29.08 Aligned_cols=24 Identities=21% Similarity=0.665 Sum_probs=18.3
Q ss_pred ccCCCCCceeecC--CCCceeEe-ecC
Q 024715 182 ARCPACGHCVERK--DGCSVVMC-RCN 205 (263)
Q Consensus 182 k~CP~C~~~i~k~--~GCnhm~C-~C~ 205 (263)
++||.|+.+|++. +|=+-.+| .|.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 6899999999876 66666666 464
No 171
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.21 E-value=13 Score=29.47 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=24.7
Q ss_pred ccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
...|.+|...|.....--..-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999864333334577999999988654
No 172
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=28.21 E-value=22 Score=29.27 Aligned_cols=24 Identities=33% Similarity=0.888 Sum_probs=18.4
Q ss_pred ccCCCCCceeecC--CCCceeEe-ecC
Q 024715 182 ARCPACGHCVERK--DGCSVVMC-RCN 205 (263)
Q Consensus 182 k~CP~C~~~i~k~--~GCnhm~C-~C~ 205 (263)
++||.|+.+|++. +|=.-.+| .|.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 6899999999875 67666666 464
No 173
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=28.16 E-value=49 Score=20.38 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=27.3
Q ss_pred cccCCCCCCCccCccccccCCChhhHHHHHHHHHHHhh
Q 024715 68 IDCPGLDCKHNLDPFACEPVIPASLFSKWCDVLCEDYV 105 (263)
Q Consensus 68 i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~~~~~~ 105 (263)
-.||. |+.......-..+-++|-+.+|...+...+.
T Consensus 18 ~~CP~--CG~~t~~ahParfSP~Dky~~yR~~lKk~~~ 53 (60)
T 2aus_D 18 ETCPV--CGEKTKVAHPPRFSPEDPYGEYRRRLKRELL 53 (60)
T ss_dssp SBCTT--TCSBCEESSCCCCCSCCTTHHHHHHHHHHHT
T ss_pred ccCcC--CCCccCCCCCCCCCCCCchHHHHHHHHHHhc
Confidence 34888 8887766666777777889999988877654
No 174
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.87 E-value=15 Score=29.32 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=25.1
Q ss_pred ccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
...|.+|...|.....-.....||..||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3589999999964433334678999999988654
No 175
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=27.69 E-value=23 Score=28.84 Aligned_cols=24 Identities=25% Similarity=0.772 Sum_probs=18.4
Q ss_pred ccCCCCCceeecC--CCCceeEe-ecC
Q 024715 182 ARCPACGHCVERK--DGCSVVMC-RCN 205 (263)
Q Consensus 182 k~CP~C~~~i~k~--~GCnhm~C-~C~ 205 (263)
++||.|+.+|++. +|=.-.+| .|.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 5899999999876 66666667 464
No 176
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=27.63 E-value=21 Score=21.83 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCceeCCcccccccccccc-CCCCCCCc
Q 024715 132 VKKTQCPNCKQWFCFQCKL-KWHAGYRC 158 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 158 (263)
...+.|..|+..+|..|.. ..|.++.-
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCe
Confidence 5788999999999999986 57887753
No 177
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=27.18 E-value=19 Score=23.39 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCceeCCcccccccccccc-CCCCCCCch
Q 024715 132 VKKTQCPNCKQWFCFQCKL-KWHAGYRCE 159 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~ 159 (263)
...++|..|+..+|..|.. ..|.+++-.
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 56 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQVA 56 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCBC
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCcc
Confidence 5789999999999999998 688887643
No 178
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=27.18 E-value=34 Score=32.57 Aligned_cols=59 Identities=19% Similarity=0.452 Sum_probs=40.7
Q ss_pred CCcccccccccccccccc------ccccCCCCC--------------------ccHHHHHHHHHHHHhhCCCCcccccCC
Q 024715 19 GSSFTCEICIEPMAASKK------FKNRNLCTH--------------------PFCQDCIARYIQVKVQDDNTAKIDCPG 72 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~------~~~~~~C~H--------------------~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (263)
-...+|+-|+.++.++.. |+..+.||- .+|.+|-++|-.-.-+.=+..++.||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 345799999999877654 333455642 379999999975443322456899999
Q ss_pred CCCCCcc
Q 024715 73 LDCKHNL 79 (263)
Q Consensus 73 ~~C~~~l 79 (263)
|+-.+
T Consensus 184 --CGP~l 188 (772)
T 4g9i_A 184 --CGPSY 188 (772)
T ss_dssp --TSCCE
T ss_pred --CCceE
Confidence 98544
No 179
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.04 E-value=16 Score=23.30 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=23.7
Q ss_pred ccCCCCCccccccccccccccccccccCCCCCccHHHHHH
Q 024715 14 EKGGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (263)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (263)
+...+.....| ||-....+...++....|...|...|+.
T Consensus 9 e~~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg 47 (72)
T 1wee_A 9 ERGVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG 47 (72)
T ss_dssp SCSSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTT
T ss_pred cCCCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeec
Confidence 34445677889 6887754443444455676666666654
No 180
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=26.80 E-value=20 Score=23.44 Aligned_cols=27 Identities=15% Similarity=0.472 Sum_probs=16.5
Q ss_pred cccCCccccccceeccccccCCCCceeCCcccc
Q 024715 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQ 142 (263)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 142 (263)
.++|. +|+........ ..-..|+.|+.
T Consensus 37 ~I~Cn--DC~~~s~v~~h----~lg~kC~~C~S 63 (79)
T 2k2d_A 37 DILCN--DCNGRSTVQFH----ILGMKCKICES 63 (79)
T ss_dssp EEEES--SSCCEEEEECC----TTCCCCTTTSC
T ss_pred EEECC--CCCCCccCCce----eecccCcCCCC
Confidence 36787 88877755433 23346777764
No 181
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=26.73 E-value=49 Score=21.39 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=29.2
Q ss_pred ccCCccccccceeccccccCCCCceeCCccccccccccccCCCCCCCchhHHhc
Q 024715 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAGYRCEESRNL 164 (263)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~ 164 (263)
..|...+|+..- -..+.|..|+..||...+.+. .+.|.....|
T Consensus 15 ~~Cs~~~C~~~d---------flpf~C~~C~~~FC~~HR~~e--~H~C~~~~~~ 57 (75)
T 1wys_A 15 QHCQVQHCRQRD---------FLPFVCDGCSGIFCLEHRSKD--SHGCSEVNVV 57 (75)
T ss_dssp CCCSCTTTCCCS---------CCCEECTTTCCEECSTTCSSG--GGTCCCCSSC
T ss_pred CCcCcccCCCcc---------ceeeECcccCcCcCcccCCcc--ccCCCCCccc
Confidence 567766776651 357899999999999888752 2346544333
No 182
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.60 E-value=23 Score=21.42 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCceeCCcccccccccccc-CCCCCCC
Q 024715 132 VKKTQCPNCKQWFCFQCKL-KWHAGYR 157 (263)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 157 (263)
...+.|..++..+|..|.. ..|.+++
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCC
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCc
Confidence 5688999999999999998 6888775
No 183
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=26.10 E-value=1e+02 Score=18.91 Aligned_cols=41 Identities=22% Similarity=0.569 Sum_probs=28.2
Q ss_pred cCCCCCccccccccccccccccccccCCCCCccHH-HHHHHH
Q 024715 15 KGGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQ-DCIARY 55 (263)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~-~Cl~~~ 55 (263)
.....-...|.-|-.++.....-+...-.-|.||. .||..|
T Consensus 14 ~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 14 QLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp CCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred CCCCccccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 33345678999999998766554344556788875 787765
No 184
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=25.92 E-value=31 Score=18.22 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=8.9
Q ss_pred cccCCCCCCCc
Q 024715 68 IDCPGLDCKHN 78 (263)
Q Consensus 68 i~CP~~~C~~~ 78 (263)
++||.++|...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 67999999854
No 185
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=25.42 E-value=35 Score=27.38 Aligned_cols=22 Identities=32% Similarity=0.869 Sum_probs=14.3
Q ss_pred ccCCCCCc----eeecCCCCceeEe-ecCC
Q 024715 182 ARCPACGH----CVERKDGCSVVMC-RCNT 206 (263)
Q Consensus 182 k~CP~C~~----~i~k~~GCnhm~C-~C~~ 206 (263)
-+||.|+- .+.. .| +..| +||+
T Consensus 15 ~~CP~Cg~~d~~~~~~-dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLFS-DG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEET-TS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEeC-CC--CeecccCCC
Confidence 58999987 4443 34 4666 4665
No 186
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=24.91 E-value=14 Score=31.01 Aligned_cols=31 Identities=23% Similarity=0.851 Sum_probs=22.7
Q ss_pred cCCcccCCCCCceeecCC-CCceeEe-ecCCce
Q 024715 178 RMKWARCPACGHCVERKD-GCSVVMC-RCNTRF 208 (263)
Q Consensus 178 ~~~~k~CP~C~~~i~k~~-GCnhm~C-~C~~~F 208 (263)
+..|.+||+|+..+...+ .=|...| .|++++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 346899999999998773 2267788 588876
No 187
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=24.71 E-value=37 Score=20.87 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=15.7
Q ss_pred cCCCcccCCccccccceeccccccCCCCceeCCcccc
Q 024715 106 LGFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQ 142 (263)
Q Consensus 106 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 142 (263)
..+....|| .|+... .....|+.||+
T Consensus 26 ~~p~l~~c~--~cGe~~---------~~H~vc~~CG~ 51 (60)
T 3v2d_5 26 TPPTLVPCP--ECKAMK---------PPHTVCPECGY 51 (60)
T ss_dssp CCCCCEECT--TTCCEE---------CTTSCCTTTCE
T ss_pred cCCceeECC--CCCCee---------cceEEcCCCCc
Confidence 346667787 576654 23455777764
No 188
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=24.67 E-value=18 Score=25.02 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=35.4
Q ss_pred CccccccccccccccccccccC-CCCCccHHHHHHHHHH--HHhhCCCCcccccCCCCCCCc
Q 024715 20 SSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQ--VKVQDDNTAKIDCPGLDCKHN 78 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~--~~i~~~~~~~i~CP~~~C~~~ 78 (263)
+...|.||..++.+...++... .|...|..+|+.---. ..|.........||. |...
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~--C~~~ 61 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDL--CLKT 61 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHH--HHHT
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcc--ccCc
Confidence 3568999999976555555555 7888898888863321 122101235677887 7643
No 189
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=24.35 E-value=33 Score=25.35 Aligned_cols=33 Identities=24% Similarity=0.555 Sum_probs=19.0
Q ss_pred CcccCCcccccc-------ceeccccccCCCCceeCCcccccc
Q 024715 109 ERSYCPNTNCMA-------LVVNECERSGKVKKTQCPNCKQWF 144 (263)
Q Consensus 109 ~~~~Cp~~~C~~-------~~~~~~~~~~~~~~~~C~~C~~~~ 144 (263)
+.+.||||.|-. .|...+. ....++|..|...+
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~~---~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIESK---NPLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEEE---TTEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEeC---CCCEEEeeCCCcCh
Confidence 357899999932 2222111 13457888776653
No 190
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=23.86 E-value=27 Score=26.16 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=21.6
Q ss_pred CcccCCCCCceeecCCCCceeEee--cCC---ceecccCcc
Q 024715 180 KWARCPACGHCVERKDGCSVVMCR--CNT---RFCYECGRK 215 (263)
Q Consensus 180 ~~k~CP~C~~~i~k~~GCnhm~C~--C~~---~FC~~C~~~ 215 (263)
..|.||+|.-.++ ++-|+ ||+ +|-..=+..
T Consensus 109 q~k~CpnC~g~L~------~~~Crgh~GyPVThFWrh~~~~ 143 (174)
T 1odh_A 109 QRKSCPNCNGPLK------LIPCRGHGGFPVTNFWRHDGRF 143 (174)
T ss_dssp HHSBCSSSCCBEE------EECCCTBTTBCCEEEEEECSSB
T ss_pred hcCCCCCCCccee------eEeccCcCCCcceEEEEEcCCE
Confidence 3589999998887 68884 874 676655444
No 191
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=23.52 E-value=1.1e+02 Score=23.40 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=19.6
Q ss_pred CCcccCCccccccceeccccccC----CCCceeCCcccc
Q 024715 108 FERSYCPNTNCMALVVNECERSG----KVKKTQCPNCKQ 142 (263)
Q Consensus 108 ~~~~~Cp~~~C~~~~~~~~~~~~----~~~~~~C~~C~~ 142 (263)
.++-.||+-.|++.-...-+.++ ...++.||.|+-
T Consensus 104 g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~D 142 (182)
T 1qf8_A 104 GDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMD 142 (182)
T ss_dssp TTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCC
T ss_pred CcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccc
Confidence 66788999999754332222111 144566665543
No 192
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.35 E-value=79 Score=20.02 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=23.8
Q ss_pred CccccccccccccccccccccCCCCCccHHHHHHH
Q 024715 20 SSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (263)
....| ||-.... ...++....|...|...|+.-
T Consensus 15 ~~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 15 NALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp TCCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSC
T ss_pred CCCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEcc
Confidence 45788 8988774 334555677998999999864
No 193
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.25 E-value=50 Score=20.29 Aligned_cols=27 Identities=26% Similarity=0.686 Sum_probs=15.8
Q ss_pred cCCCcccCCccccccceeccccccCCCCceeCCccccc
Q 024715 106 LGFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQW 143 (263)
Q Consensus 106 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 143 (263)
..+....|| .|+... .....|+.||++
T Consensus 26 ~~p~l~~c~--~cG~~~---------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECP--QCHGKK---------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECT--TTCCEE---------CTTBCCTTTCBS
T ss_pred cCCCceECC--CCCCEe---------CCceEcCCCCcC
Confidence 345667777 566653 245567767643
No 194
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.09 E-value=75 Score=19.92 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 024715 235 IAMMVIFHVIVLAGMKIS 252 (263)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~ 252 (263)
|.+.-+..+++++|..|=
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 444555556666666654
No 195
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.06 E-value=20 Score=18.44 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.4
Q ss_pred Ccccccccccccccccc
Q 024715 20 SSFTCEICIEPMAASKK 36 (263)
Q Consensus 20 ~~~~C~IC~~~~~~~~~ 36 (263)
..+.|+||....++.+.
T Consensus 2 ~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCEECTTSSCEESSHHH
T ss_pred CcccCccccccCcChHH
Confidence 46899999988876654
No 196
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.16 E-value=38 Score=15.48 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=6.4
Q ss_pred ceeCCcccccc
Q 024715 134 KTQCPNCKQWF 144 (263)
Q Consensus 134 ~~~C~~C~~~~ 144 (263)
.+.|+.|+..|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 35666666554
No 197
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.07 E-value=69 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.523 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCcccCCCCCceeecC
Q 024715 170 IVFGQLVERMKWARCPACGHCVERK 194 (263)
Q Consensus 170 ~~~~~~~~~~~~k~CP~C~~~i~k~ 194 (263)
..+.++........||+||..+...
T Consensus 211 q~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 211 KIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp HHHHHHHHSSSCEECTTTCCEEECS
T ss_pred HHHHHHHCCCCEEECCCCCeeEEeC
Confidence 3445555566789999999998754
No 198
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.04 E-value=50 Score=17.88 Aligned_cols=25 Identities=20% Similarity=0.655 Sum_probs=15.6
Q ss_pred cCCCCCce---eecCCCCceeEee-cCCc
Q 024715 183 RCPACGHC---VERKDGCSVVMCR-CNTR 207 (263)
Q Consensus 183 ~CP~C~~~---i~k~~GCnhm~C~-C~~~ 207 (263)
.||.|+.+ +.+..+=-.+.|. ||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 47888874 3344555667784 8764
No 199
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.57 E-value=1e+02 Score=19.69 Aligned_cols=37 Identities=19% Similarity=0.536 Sum_probs=25.9
Q ss_pred CCccccccccccccccccccccCCCCCccHHHHHHH-HH
Q 024715 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR-YI 56 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~-~~ 56 (263)
.....|.+|...-. .......+.|.-.||..|++. +.
T Consensus 28 ~~~v~C~~C~~~~~-~~A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 28 AEKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp SCCCBCSSCCSSSC-CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCccCCcCCCCCC-CCCeeEccCccchhhhhhhHhhcC
Confidence 34688999986431 122234688999999999996 53
No 200
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.36 E-value=58 Score=28.17 Aligned_cols=36 Identities=22% Similarity=0.560 Sum_probs=27.0
Q ss_pred CCCCccccccccccccccccccccC--CCCCccHHHHHHHHH
Q 024715 17 GGGSSFTCEICIEPMAASKKFKNRN--LCTHPFCQDCIARYI 56 (263)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 56 (263)
++.....|.+|-+.-. ++... .|...||.+|+...+
T Consensus 89 ~DG~~~yCr~C~~Gg~----l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSGET----LLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCCSS----CEECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCCCe----EEEeCCCCCCcchHHHHHHHhc
Confidence 3456789999997652 22345 789999999999887
No 201
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=20.01 E-value=33 Score=32.00 Aligned_cols=59 Identities=25% Similarity=0.584 Sum_probs=41.2
Q ss_pred CCcccccccccccccccc------ccccCCCC--------------------CccHHHHHHHHHHHHhhCCCCcccccCC
Q 024715 19 GSSFTCEICIEPMAASKK------FKNRNLCT--------------------HPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (263)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~------~~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (263)
-...+|.-|+.++.++.. |+....|| -.+|.+|.++|-.-.-+.=+..++.||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 456799999998876644 33344554 2489999999986543322456899999
Q ss_pred CCCCCcc
Q 024715 73 LDCKHNL 79 (263)
Q Consensus 73 ~~C~~~l 79 (263)
|+-.+
T Consensus 95 --CGP~l 99 (657)
T 3ttc_A 95 --CGPYL 99 (657)
T ss_dssp --TSCCE
T ss_pred --cCccc
Confidence 98665
Done!