Query 024717
Match_columns 263
No_of_seqs 146 out of 186
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.3 3.1E-10 1.1E-14 103.9 23.5 200 5-211 164-393 (451)
2 3o7q_A L-fucose-proton symport 99.0 4.3E-08 1.5E-12 89.4 19.4 194 4-206 161-388 (438)
3 2gfp_A EMRD, multidrug resista 98.9 1.1E-09 3.7E-14 98.7 5.2 199 4-212 132-338 (375)
4 4aps_A DI-OR tripeptide H+ sym 98.6 1.1E-06 3.8E-11 81.7 17.2 113 105-217 317-439 (491)
5 2cfq_A Lactose permease; trans 98.5 2.5E-06 8.5E-11 78.8 14.8 196 7-211 149-360 (417)
6 3o7q_A L-fucose-proton symport 98.2 0.00015 5.2E-09 65.7 20.3 129 84-216 36-169 (438)
7 4aps_A DI-OR tripeptide H+ sym 98.2 0.00011 3.6E-09 68.3 19.4 142 71-216 10-162 (491)
8 2xut_A Proton/peptide symporte 98.2 2.9E-05 1E-09 72.8 14.3 106 108-213 336-454 (524)
9 2xut_A Proton/peptide symporte 98.1 0.0001 3.4E-09 69.1 17.2 141 73-216 12-164 (524)
10 1pw4_A Glycerol-3-phosphate tr 98.1 0.00012 4.1E-09 66.5 16.1 116 95-213 49-168 (451)
11 2gfp_A EMRD, multidrug resista 98.0 8.9E-05 3.1E-09 66.3 13.5 136 76-216 3-140 (375)
12 4gc0_A D-xylose-proton symport 97.1 0.026 8.8E-07 51.9 17.0 139 71-212 274-418 (491)
13 4gc0_A D-xylose-proton symport 96.3 0.079 2.7E-06 48.6 14.4 100 107-213 55-175 (491)
14 2cfq_A Lactose permease; trans 95.0 0.011 3.8E-07 54.1 3.0 78 68-148 2-81 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.34 E-value=3.1e-10 Score=103.94 Aligned_cols=200 Identities=10% Similarity=0.062 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHhhhcccCC-ccchHHHHHHHHHHHHHHHhcccccCCCCC---c-ch------------------h
Q 024717 5 ESAALIGGQVLANWLVGIDVKKG-VVPSSTASVFLSILGIICVSRGWTENPKMA---F-DD------------------Y 61 (263)
Q Consensus 5 ns~~AI~aG~~a~~lv~~~~~~g-~~aPF~~a~~~l~i~~ili~~~w~ENyg~~---~-~~------------------~ 61 (263)
.++-.+++..+++++.+. .| |+.+|....++.++..++.....+|+..+. + .+ .
T Consensus 164 ~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTA 240 (451)
T ss_dssp HHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CC
T ss_pred HHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhccccc
Confidence 344455667777887775 47 999999988887777666655455543221 0 00 0
Q ss_pred hHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhhhhhccC---CCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCC-
Q 024717 62 RTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD---GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSF- 137 (263)
Q Consensus 62 ~~~~~~~i~~d~~il~lg~~qslfEgsmy~FVf~WTP~L~~~---~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~- 137 (263)
.......+++||+++.+.+...+.....+.+ ..|.|.+.++ -++...|++++.+.++.++|+.+.+++.. |+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---~~~ 316 (451)
T 1pw4_A 241 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD---KVF 316 (451)
T ss_dssp THHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTS
T ss_pred ccchHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 0011466789999999888888777766655 4566766553 24445799999999999999999998875 34
Q ss_pred -CchhHHHHHHHHHH-HHHHHhhccc-hhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 024717 138 -RTEDCLLYAFVVLG-FVFSIIAYDY-QEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA 211 (263)
Q Consensus 138 -~~~~~l~~~~~~~a-~~l~~~~~~~-~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~ 211 (263)
+.++.+.....+.. .++....... .+.......++++-.+.|..+|....+-.+.+|+|.|+++++++..--|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 317 RGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 44555544444433 4443333222 12233445566666677888999999999999999999999999988888
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.97 E-value=4.3e-08 Score=89.44 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCC-------------------------ccchHHHHHHHHHHHHHHHhcc-cccCCCCC
Q 024717 4 FESAALIGGQVLANWLVGIDVKKG-------------------------VVPSSTASVFLSILGIICVSRG-WTENPKMA 57 (263)
Q Consensus 4 ~ns~~AI~aG~~a~~lv~~~~~~g-------------------------~~aPF~~a~~~l~i~~ili~~~-w~ENyg~~ 57 (263)
.+++-.+++..+++++.+.. .+ |+.+|........+..++.... -+|...++
T Consensus 161 ~~~~g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSLILSN--VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHTS--SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc--cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 34555667777888887332 23 7899966555555444444432 34443321
Q ss_pred ----cchhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhhhhh-cc---CCCCCchHHHHHHHHHHHHHhHhhhhh
Q 024717 58 ----FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL-VA---DGREVHLGLIFPSLLGARMLGSTVFPW 129 (263)
Q Consensus 58 ----~~~~~~~~~~~i~~d~~il~lg~~qslfEgsmy~FVf~WTP~L-~~---~~~~~plGlIFs~FM~~~mlGS~~f~~ 129 (263)
+++..++.++.+++||+++.+.+...+.-+..+ .+..|.|.+ .+ +-++..-|++++.+.++.++|+.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 239 HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT-ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223567888999999998887777665544 445777777 54 234556799999999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHHhH
Q 024717 130 LISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSL 206 (263)
Q Consensus 130 l~~~~~~~~~~~~l~~~~~~~a~~l~~~~~~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr 206 (263)
+.. |++.++.+.....+.++++......... ..++.++++-.+.|..+|....+-.+.+|++ |++..++.-
T Consensus 318 l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 318 LIS---RFAPHKVLAAYALIAMALCLISAFAGGH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHH---HhcchHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH
Confidence 875 5677777766666665554443333322 2355667777888999999999999999977 888877654
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.89 E-value=1.1e-09 Score=98.70 Aligned_cols=199 Identities=14% Similarity=0.057 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCccchHHHHHHHHHHHHHHHhcccccCCCCC-cchhhHHHHHHHhcChhHHHHHHHH
Q 024717 4 FESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMA-FDDYRTSFFTYIFGDKRIWLLVLAQ 82 (263)
Q Consensus 4 ~ns~~AI~aG~~a~~lv~~~~~~g~~aPF~~a~~~l~i~~ili~~~w~ENyg~~-~~~~~~~~~~~i~~d~~il~lg~~q 82 (263)
.+++-.+++..+++++.+.. ||+.+|....+..++..++.....+|+..++ +++..++.++.+.+||+++.+.+..
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMW---NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHH---HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHH
Confidence 34555667777888887754 8999999888888777775666667765442 2222334566788899999888888
Q ss_pred HHHHHHHHHHHHhhhhhhcc---CCCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHHH-HHHHHH--H
Q 024717 83 ACLQFSIALFWILWAPTLVA---DGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV-LGFVFS--I 156 (263)
Q Consensus 83 slfEgsmy~FVf~WTP~L~~---~~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~~-~a~~l~--~ 156 (263)
.+.....+.+. .|.|.+.+ +.++...|++++.+.+...+|+.+.+++.. |.+. .+...... ...++. .
T Consensus 209 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~---r~~~--~~~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 209 IGGLAGIAAFE-ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK---RFST--LMWQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHHHHH-HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTT---HHHH--HHHHHHHHHHHTSSSSSH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHH
Confidence 77777666654 56666544 224556799999999999999999888753 2222 22222222 111111 1
Q ss_pred hhc-cchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 024717 157 IAY-DYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA 212 (263)
Q Consensus 157 ~~~-~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~ 212 (263)
... +..+........+++-++.|.++|....+-.+..| |+|+++++++..--|+-
T Consensus 283 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 283 PDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIG 338 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHH
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHH
Confidence 111 11122223455667778889999999999999999 89999999998776654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.64 E-value=1.1e-06 Score=81.73 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhhhcCCCC--CCchhHHHHHHHHHHHHHHHhhcc--------chhhHHHHHHHHHH
Q 024717 105 REVHLGLIFPSLLGARMLGSTVFPWLISGPSS--FRTEDCLLYAFVVLGFVFSIIAYD--------YQEIGILVALFCLF 174 (263)
Q Consensus 105 ~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~--~~~~~~l~~~~~~~a~~l~~~~~~--------~~~~~~~~~~Fc~f 174 (263)
+..+-|++.+...+..++++.+.+++..+..+ ......+.....+.++++...... +.+.......++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 33677888888888888888887776542111 111222334444444443332211 11223345566677
Q ss_pred HHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHH
Q 024717 175 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFL 217 (263)
Q Consensus 175 E~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~v~~~l 217 (263)
-++.|..+|....+-.+..|++.|+++++++..--++--.+.-
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888999999999999999999999999877776544333
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.48 E-value=2.5e-06 Score=78.78 Aligned_cols=196 Identities=11% Similarity=0.012 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhhhcccCCccchHHHHHHHHHHHHHHHhcccccCCC--C-C------cchhhHHHHHHHhcChhHHH
Q 024717 7 AALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPK--M-A------FDDYRTSFFTYIFGDKRIWL 77 (263)
Q Consensus 7 ~~AI~aG~~a~~lv~~~~~~g~~aPF~~a~~~l~i~~ili~~~w~ENyg--~-~------~~~~~~~~~~~i~~d~~il~ 77 (263)
+-.+++..+++++.+. +|+.+|+.+++..++..++....-+|... + + .++...+.+..+++||+.+.
T Consensus 149 ~g~~~~~~l~~~l~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (417)
T 2cfq_A 149 VGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWF 224 (417)
T ss_dssp THHHHHHHHHHHHHHH----CSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhh
Confidence 3345566777777763 67889998877665555544433333311 0 0 01111234567889999887
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccC---C---CCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHHHHH
Q 024717 78 LVLAQACLQFSIALFWILWAPTLVAD---G---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLG 151 (263)
Q Consensus 78 lg~~qslfEgsmy~FVf~WTP~L~~~---~---~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~~~a 151 (263)
+.+...+... .|.....|.|.+..+ . +....|++++...++..+|..+.+++.. |++.++.+.....+.+
T Consensus 225 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 225 LSLYVIGVSC-TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN---RIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcHHHHHHHHHHHHH
Confidence 7666444443 333334566765331 1 1223477777777777888888888775 5666666666666555
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHH-hHHHHHH
Q 024717 152 FVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISL-SLAPANA 211 (263)
Q Consensus 152 ~~l~~~~~~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~-fr~PlN~ 211 (263)
+++......+ +....+...++.-.+.+.+.|....+-.+..|++.|+|.+++ +..=-++
T Consensus 301 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 301 VRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp HHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence 5444333222 111222222333334566777777889999999999999888 4543333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.23 E-value=0.00015 Score=65.74 Aligned_cols=129 Identities=9% Similarity=0.053 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhhhhhcc--CCCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHHHHHHHHHHh---h
Q 024717 84 CLQFSIALFWILWAPTLVA--DGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSII---A 158 (263)
Q Consensus 84 lfEgsmy~FVf~WTP~L~~--~~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~~~a~~l~~~---~ 158 (263)
+..+..+..+-...|.+.+ +-++...|++.+.+++..++++.+.+.+.. |++.++.+....++.+++.... .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d---r~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK---KLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH---HhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333334555554 456778999999999999999999999986 6777777776666665444333 2
Q ss_pred ccchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHH
Q 024717 159 YDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF 216 (263)
Q Consensus 159 ~~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~v~~~ 216 (263)
.. ++....+.+.++.=++.|..+|....+-.+..|+|+|+.++++++.=.++-.++.
T Consensus 113 ~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 169 (438)
T 3o7q_A 113 EI-MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 11 1222334455555566799999999999999999999999999999888854333
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.22 E-value=0.00011 Score=68.25 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=95.3
Q ss_pred cChhH-HHHHHHHHHHHHHHHHHHHhhhhhhcc-------CCCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCC-CCchh
Q 024717 71 GDKRI-WLLVLAQACLQFSIALFWILWAPTLVA-------DGREVHLGLIFPSLLGARMLGSTVFPWLISGPSS-FRTED 141 (263)
Q Consensus 71 ~d~~i-l~lg~~qslfEgsmy~FVf~WTP~L~~-------~~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~-~~~~~ 141 (263)
++||. +.+.+...+.....|.......|.+.+ +-++...|++.+.+.++.++++.+.+.+.. | ++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~~g~r~ 86 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD---RIIGARP 86 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSCHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchH
Confidence 34444 444444444444555444444444432 224567899999999999999999999885 5 67777
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCch--hHHHHHHhHHHHHHHHHHH
Q 024717 142 CLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNEL--RGGMISLSLAPANAAILLF 216 (263)
Q Consensus 142 ~l~~~~~~~a~~l~~~~~~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~--Ratvm~~fr~PlN~~v~~~ 216 (263)
.+....++.+++.......+ +....+.+..+.-++.|.++|....+-.+..|+++ |++.++.++.-.|+-..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 77776666654444333222 22233445555566679999999999999999988 8899999999888864443
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.16 E-value=2.9e-05 Score=72.78 Aligned_cols=106 Identities=8% Similarity=0.029 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHhHhhhhhhh----cCC-CCCCchhHHHHHHHHHHHHHHHhhcc--------chhhHHHHHHHHHH
Q 024717 108 HLGLIFPSLLGARMLGSTVFPWLI----SGP-SSFRTEDCLLYAFVVLGFVFSIIAYD--------YQEIGILVALFCLF 174 (263)
Q Consensus 108 plGlIFs~FM~~~mlGS~~f~~l~----~~~-~~~~~~~~l~~~~~~~a~~l~~~~~~--------~~~~~~~~~~Fc~f 174 (263)
+-|++.+...+..++++.+..++. .+. .+.++.+.+...+++.++++...... ..+.......+.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 677777766666777776666553 211 11223344555555555554433221 11222344556666
Q ss_pred HHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHHH
Q 024717 175 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI 213 (263)
Q Consensus 175 E~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~v 213 (263)
-++.|...|....+-.+..|++.|+++++++..--++--
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 454 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN 454 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH
Confidence 677789999999999999999999999999988777753
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.13 E-value=0.0001 Score=69.11 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcc--C------CCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCC-CchhHH
Q 024717 73 KRIWLLVLAQACLQFSIALFWILWAPTLVA--D------GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSF-RTEDCL 143 (263)
Q Consensus 73 ~~il~lg~~qslfEgsmy~FVf~WTP~L~~--~------~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~-~~~~~l 143 (263)
|+++.+.+.+.+.....|.......+.+.+ + -+....|++.+.+.++..+++.+.+++.. |+ +.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d---r~~g~r~~~ 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD---RFFGKYNTI 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT---TSSCSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchHHH
Confidence 455556666666666666555544554544 4 46677999999999999999999999885 56 777776
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHH---hHHHHHHHHHHH
Q 024717 144 LYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISL---SLAPANAAILLF 216 (263)
Q Consensus 144 ~~~~~~~a~~l~~~~~~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~---fr~PlN~~v~~~ 216 (263)
....++.+++.........+....+.+..+.-++.|.++|....+-.+..|+++|+++.+. ++.-.|+-..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544333322211222334445555566799999999999999999999655444 887777754333
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.07 E-value=0.00012 Score=66.52 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=83.7
Q ss_pred hhhhhhccC-CCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHHHHHHHHHHhhc-c--chhhHHHHHH
Q 024717 95 LWAPTLVAD-GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY-D--YQEIGILVAL 170 (263)
Q Consensus 95 ~WTP~L~~~-~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~~~a~~l~~~~~-~--~~~~~~~~~~ 170 (263)
...|.+.++ .++...|++.+.+.++..+++.+.+.+.. |++.++.+....++.+++...... + .++....+.+
T Consensus 49 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d---r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (451)
T 1pw4_A 49 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD---RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 125 (451)
T ss_dssp HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 345555443 35567999999999999999999999885 567777777666665544333322 0 1122233445
Q ss_pred HHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHHH
Q 024717 171 FCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI 213 (263)
Q Consensus 171 Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~v 213 (263)
..+.-++.|..+|+...+-.++.|+|+|++++++++.-.++-.
T Consensus 126 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 126 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 168 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH
Confidence 5555666789999999999999999999999999998888753
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.00 E-value=8.9e-05 Score=66.26 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHHHHHHH
Q 024717 76 WLLVLAQACLQFSIALFWILWAPTLVA--DGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFV 153 (263)
Q Consensus 76 l~lg~~qslfEgsmy~FVf~WTP~L~~--~~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~~~a~~ 153 (263)
+.+.+.+.+.......+.... |.+.+ +.++...|++.+.+++...+++.+.+.+.. |.+.++.+.....+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD---RVGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT---TSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHH
Confidence 334444444444444443333 33333 446677999999999999999999999886 455555555555444433
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHH
Q 024717 154 FSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF 216 (263)
Q Consensus 154 l~~~~~~~~~~~~~~~~Fc~fE~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~v~~~ 216 (263)
....... ++....+....+.-.+.|.++|....+-.+..|+|+|+++++.++.-.++-..+.
T Consensus 79 ~~~~~~~-~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 79 TLVAVTT-SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322211 1222233444445556688999999999999999999999999998888764444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.08 E-value=0.026 Score=51.89 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=80.8
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHH
Q 024717 71 GDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFV 148 (263)
Q Consensus 71 ~d~~il~lg~~qslfEgsmy~FVf~WTP~L~~~--~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~ 148 (263)
+.+++......+.+.+...+..+..|.|.+.+. .++...........+...+++.+...+.. |++.++.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d---r~Grr~~~~~~~~ 350 (491)
T 4gc0_A 274 GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD---KFGRKPLQIIGAL 350 (491)
T ss_dssp CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH---hhcCcchhccchH
Confidence 445566666666677777788888899988662 22223333444445556666666666554 3444455554444
Q ss_pred HHHHHHHHh---hccchhhHHHHHHHHHHHHHhHh-HhhHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 024717 149 VLGFVFSII---AYDYQEIGILVALFCLFHACVGL-ILPSLARLRTMYVPNELRGGMISLSLAPANAA 212 (263)
Q Consensus 149 ~~a~~l~~~---~~~~~~~~~~~~~Fc~fE~~vG~-y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~ 212 (263)
+.++++... ..........+...+++-.+.++ +.|.....-+|..|.+.|++.+++...=-++.
T Consensus 351 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~ 418 (491)
T 4gc0_A 351 GMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLA 418 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHH
Confidence 444333322 11221112233444444444432 45777888999999999999999876655543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.33 E-value=0.079 Score=48.59 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=69.4
Q ss_pred CchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHHHHHHHHHHHHHhhc-----------------cchhhHHHHH
Q 024717 107 VHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY-----------------DYQEIGILVA 169 (263)
Q Consensus 107 ~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~~~~~~a~~l~~~~~-----------------~~~~~~~~~~ 169 (263)
...|++.+++++..++|+.+++.+.. |++-++.+....++..++...... ..++ ++
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laD---r~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~----~~ 127 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSN---RFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY----VP 127 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh----HH
Confidence 34799999999999999999999875 566666655544433322211110 0111 33
Q ss_pred HHHHHH----HHhHhHhhHHHHHHHhcCCCchhHHHHHHhHHHHHHHH
Q 024717 170 LFCLFH----ACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI 213 (263)
Q Consensus 170 ~Fc~fE----~~vG~y~P~m~~Lr~~~Vp~e~Ratvm~~fr~PlN~~v 213 (263)
.|++.- +++|..+|....+-+++.|+++|+...++++.-.+.-.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh
Confidence 333333 44588999999999999999999999999988766643
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.03 E-value=0.011 Score=54.10 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=56.6
Q ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCCCchHHHHHHHHHHHHHhHhhhhhhhcCCCCCCchhHHHH
Q 024717 68 YIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVA--DGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLY 145 (263)
Q Consensus 68 ~i~~d~~il~lg~~qslfEgsmy~FVf~WTP~L~~--~~~~~plGlIFs~FM~~~mlGS~~f~~l~~~~~~~~~~~~l~~ 145 (263)
+++|||+.+.+.....++-..+....-.+.+.+++ +-++...|++.+.+.+...+|+.+.+.+.. |++.++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD---r~Grr~~l~~ 78 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD---KLGLRKYLLW 78 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT---TSTTCCHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHH
Confidence 46789999999888777666655544444444544 345677999999999999999999999985 5666555554
Q ss_pred HHH
Q 024717 146 AFV 148 (263)
Q Consensus 146 ~~~ 148 (263)
...
T Consensus 79 ~~~ 81 (417)
T 2cfq_A 79 IIT 81 (417)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
Done!