BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024718
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Pyrimidine- Specific Nucleoside Hydrolase
Length = 311
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 7/256 (2%)
Query: 7 VPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEV 66
+PV G+ +PL V E HG G+G++++ P + K +K+A+ ++D +EY GE+
Sbjct: 58 IPVYPGANKPLLKNYITV-EKVHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGEL 116
Query: 67 SILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVF 126
LA+ PLTNLALA D+S K+K + V+GGA F +GN+ P AE NI+ DP+AA +VF
Sbjct: 117 EFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNIWVDPDAAKIVF 176
Query: 127 TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 186
+G +I ++ ++ +TD ++ ++ K R +L M YR + ++G
Sbjct: 177 NAGFDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPH 236
Query: 187 HDPVSFVALVRPDLFTF--KKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVA 244
D ++ + + T K+ VV T I G TL+D R++ W+ +
Sbjct: 237 PDAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVD----RFDADTSWSDKPNAEIV 292
Query: 245 WTVNVDKVLNYIKRLL 260
+ +N + I LL
Sbjct: 293 YEINKKSFMEKIYDLL 308
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 4/219 (1%)
Query: 7 VPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEV 66
+PVA G+ +PL + +A+ HG G+ +L P + A E + + E V
Sbjct: 62 IPVAGGAVKPLMR-ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPV 120
Query: 67 SILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVF 126
+I++ GP TN+AL + SK+ IV++GGA LGN PAAE NIY DPEAA++VF
Sbjct: 121 TIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFNIYVDPEAAEIVF 179
Query: 127 TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSD-GVHGIF 185
SG + + G+++T + ++ D R ++ ++ F+ ++H G G
Sbjct: 180 QSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAP 239
Query: 186 LHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 223
LHDP + L++P+LFT + V VETQG G T++D
Sbjct: 240 LHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVD 278
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 4/219 (1%)
Query: 7 VPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEV 66
+PVA G+ +PL + +A+ HG G+ +L P + A E + + E V
Sbjct: 72 IPVAGGAVKPLMR-ELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPV 130
Query: 67 SILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVF 126
+I++ GP TN+AL + SK+ IV++GGA LGN PAAE NIY DPEAA++VF
Sbjct: 131 TIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAM-GLGNWTPAAEFNIYVDPEAAEIVF 189
Query: 127 TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSD-GVHGIF 185
SG + + G+++T + ++ D R ++ ++ F+ ++H G G
Sbjct: 190 QSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAP 249
Query: 186 LHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 223
LHDP + L++P+LFT + V VETQG G T++D
Sbjct: 250 LHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVD 288
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 6/226 (2%)
Query: 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV 59
+AG GVPVA G +PL G R A HG GMGN+S P K D ++A + ++D +
Sbjct: 55 VAGIVGVPVAAGCTKPLVRGV-RNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLI 113
Query: 60 -SEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGD 118
S P ++++ G LTN+A+A++ + +VK +V++GG + GN +P AE N++ D
Sbjct: 114 MSHEPKTITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHT-GNASPVAEFNVFID 172
Query: 119 PEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKS 178
PEAA +VF N+ +VG+++T T A +R+ + + + FY + K
Sbjct: 173 PEAAHIVFNESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKE 232
Query: 179 DGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 223
+G +HDP + ++ P + T ++ V +E G + G T+ D
Sbjct: 233 HDTYG-KVHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVAD 277
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKN|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
Length = 316
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 3/219 (1%)
Query: 7 VPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEV 66
VPV G P+P+ + VA+ HG G+ P + +A ++++D + G++
Sbjct: 64 VPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDI 122
Query: 67 SILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVF 126
+++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA VVF
Sbjct: 123 TLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAARVVF 181
Query: 127 TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 186
TSG + ++G+++T Q T + ++ G +L D+ F ++ G+ G +
Sbjct: 182 TSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 241
Query: 187 HDPVSFVALVRPDLFTFKKGVVRVETQ-GICMGHTLMDQ 224
HD L+ PD ++ V V+ G C G T+ D+
Sbjct: 242 HDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDE 280
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|B Chain B, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|C Chain C, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|D Chain D, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
Length = 313
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 3/219 (1%)
Query: 7 VPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEV 66
VPV G P+P+ + VA+ HG G+ P + +A ++++D + G++
Sbjct: 61 VPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDI 119
Query: 67 SILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVF 126
+++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA VVF
Sbjct: 120 TLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAARVVF 178
Query: 127 TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 186
TSG + ++G+++T Q T + ++ G +L D+ F ++ G+ G +
Sbjct: 179 TSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 238
Query: 187 HDPVSFVALVRPDLFTFKKGVVRVETQ-GICMGHTLMDQ 224
HD L+ PD ++ V V+ G C G T+ D+
Sbjct: 239 HDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDE 277
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
Length = 333
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 3/219 (1%)
Query: 7 VPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEV 66
VPV G P+P+ + VA+ HG G+ P + +A ++++D + G++
Sbjct: 81 VPVYAGMPQPIMR-QQIVADNIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDI 139
Query: 67 SILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVF 126
+++ +GPL+N+A+A++ + K++ IV++GGA+ GN P+AE NI+ DPEAA VVF
Sbjct: 140 TLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAY-GTGNFTPSAEFNIFADPEAARVVF 198
Query: 127 TSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL 186
TSG + ++G+++T Q T + ++ G +L D+ F ++ G+ G +
Sbjct: 199 TSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPV 258
Query: 187 HDPVSFVALVRPDLFTFKKGVVRVETQ-GICMGHTLMDQ 224
HD L+ PD ++ V V+ G C G T+ D+
Sbjct: 259 HDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDE 297
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase
pdb|1MAS|B Chain B, Purine Nucleoside Hydrolase
pdb|2MAS|A Chain A, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|B Chain B, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|C Chain C, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|D Chain D, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
Length = 314
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 16/266 (6%)
Query: 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV 59
+AG GVP+A G +PL K A HG GMG ++ K D ++A ++D V
Sbjct: 54 IAGITGVPIAAGCDKPLVR-KIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLV 112
Query: 60 -SEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGD 118
S P ++++ G LTN+A+A + + +VK +V++GG + GN AE NI D
Sbjct: 113 MSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHE-GNATSVAEFNIIID 171
Query: 119 PEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKS 178
PEAA +VF + +VG+++T Q T +++ + + ++ +Y + +
Sbjct: 172 PEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSN 231
Query: 179 DGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTG 237
+ +HDP + ++ P + T ++ V +E G + +G T+ D NP
Sbjct: 232 RYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVAD-------FRNPRPE 284
Query: 238 YSPVSVAWTVNVDK----VLNYIKRL 259
+ VA ++ +K VL+ ++R+
Sbjct: 285 HCHTQVAVKLDFEKFWGLVLDALERI 310
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 3 GCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY 62
G VPV GS P+ G R E HGS+GM N + P + ++A + ++ E+
Sbjct: 54 GKQDVPVYLGSQRPILGNW-RTVEEVHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEH 112
Query: 63 PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAA 122
GE+ ILA+ PLTN+ALA +D S +VK I ++GGA F+ GN P AE N + DPEAA
Sbjct: 113 EGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGA-FSKGNTTPIAEFNFWVDPEAA 171
Query: 123 DVVFTSGANIAVVGINITT-QVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGV 181
+V +G +I +V + L + D+ + + + ++ K +++ K+ G+
Sbjct: 172 KIVLDAGFDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGI 231
Query: 182 HG 183
G
Sbjct: 232 SG 233
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
pdb|2C40|B Chain B, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
Length = 312
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 49 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVN 108
K A L++ + + + ++L GPLT+LA A+ +K+K +V +GG F GNV+
Sbjct: 103 KPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTAGNVH 162
Query: 109 P-----AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY--V 161
AE N + DPEA V+ + I ++ + T QV LT D E + +Y +
Sbjct: 163 EPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLT-IDIREQWAKERKYIGI 221
Query: 162 QLLGDMCKFYRDW-HVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHT 220
LG H + + +L D ++ + + DL + V T G G T
Sbjct: 222 DFLGQCYAIVPPLVHFAKNSTY--YLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRT 279
Query: 221 L-MDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 262
+ D G PV V + VN D+ +YI RL K
Sbjct: 280 VETDDG-------------RPVHVVYDVNHDRFFDYITRLAKK 309
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 43 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 101
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 121 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 180
Query: 102 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 155
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 181 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 230
Query: 156 SKGRYVQLLGDMCKF 170
+ YVQ G+ F
Sbjct: 231 -RSPYVQRFGEQTNF 244
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 43 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 101
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 121 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 180
Query: 102 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 155
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 181 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 230
Query: 156 SKGRYVQLLGDMCKF 170
+ YVQ G+ F
Sbjct: 231 -RSPYVQRFGEQTNF 244
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 43 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 101
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 120 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 179
Query: 102 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 155
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 180 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 229
Query: 156 SKGRYVQLLGDMCKF 170
+ YVQ G+ F
Sbjct: 230 -RSPYVQRFGEQTNF 243
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 43 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 101
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 120 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 179
Query: 102 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 155
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 180 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 229
Query: 156 SKGRYVQLLGDMCKF 170
+ YVQ G+ F
Sbjct: 230 -RSPYVQRFGEQTNF 243
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 43 KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI-KRDSSFASKVKNIVVLGGAF 101
KA+ + L D V +V+I GPL+N+A I K F SKV+ V++GGA
Sbjct: 121 KAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV 180
Query: 102 FALGNV-----NPAAEANIYGDPEAADVVF-TSGANIAVVGINITTQVKLTDADFLELRQ 155
GNV + AE NIY DP +A VF G + ++ T V +
Sbjct: 181 DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPV---------- 230
Query: 156 SKGRYVQLLGDMCKF 170
+ YVQ G+ F
Sbjct: 231 -RSPYVQRFGEQTNF 244
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|B Chain B, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|C Chain C, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|D Chain D, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
Length = 360
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 67 SILALGPLTNLALAIKRDSSFASK-----VKNIVVLGGAFFALGNVNPAAEANIYGDPEA 121
++ALGPLTN+ALA++ + SK + IV++ G + GN N AAE N + DPEA
Sbjct: 130 QLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTSESKGNSNMAAEFNSHCDPEA 189
Query: 122 ADVVF 126
VV
Sbjct: 190 GVVVL 194
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 184 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL------MDQGLKRWNVSNPWT 236
I+ + PV V D T+K GV + E + GH + ++ G+ W V+N W
Sbjct: 164 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWN 222
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 184 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL------MDQGLKRWNVSNPWT 236
I+ + PV V D T+K GV + E + GH + ++ G+ W V+N W
Sbjct: 170 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWN 228
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 184 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTL------MDQGLKRWNVSNPWT 236
I+ + PV V D T+K GV + E + GH + ++ G+ W V+N W
Sbjct: 226 IYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWN 284
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 150 FLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIF----------LHDPVSFVALVRPD 199
F+E + Y+ + G R W + +D G+F + +P+ V LV
Sbjct: 370 FMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQ 429
Query: 200 LFTFKKGVVRVETQGICMGHTLMD 223
+ +++ R+E + +T D
Sbjct: 430 MLEYEEPTFRMEYSSLATPNTWFD 453
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 163 LLGDMCKFYRDWHVKSDGVHGIFLHDPVS 191
L G M ++Y +WH+++DG H LHD +
Sbjct: 3 LNGTMMQYY-EWHLENDGQHWNRLHDDAA 30
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 163 LLGDMCKFYRDWHVKSDGVHGIFLHDPVS 191
L G M ++Y +WH+++DG H LHD +
Sbjct: 3 LNGTMMQYY-EWHLENDGQHWNRLHDDAA 30
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 181 VHGIFLHDPVSFVALVRPDLFTFKKGVV----------RVETQGICMGHTLMDQGLKRWN 230
V + L++PVSF V D ++KG+ +V + +G+ + G+ W
Sbjct: 125 VEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG-EENGIPYWI 183
Query: 231 VSNPW 235
V N W
Sbjct: 184 VKNSW 188
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 53 EFLVDKVSEYPGEVSILALGPLTNLALA 80
E + ++V E P +++LA GPLT+ ALA
Sbjct: 115 EVVREEVREIPPGITVLATGPLTSEALA 142
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 53 EFLVDKVSEYPGEVSILALGPLTNLALA 80
E + ++V E P +++LA GPLT+ ALA
Sbjct: 115 EVVREEVREIPPGITVLATGPLTSEALA 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,159,739
Number of Sequences: 62578
Number of extensions: 328842
Number of successful extensions: 902
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 35
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)