BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024720
         (263 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UBN1|CCG4_HUMAN Voltage-dependent calcium channel gamma-4 subunit OS=Homo sapiens
           GN=CACNG4 PE=2 SV=1
          Length = 327

 Score = 31.2 bits (69), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 65  VQTLRNNIMASTLLASTAIMLSSLIAIL--MTSSDGDRSTWFTFGDRSDFFYSIKFFFIL 122
           + + +NNI+ S  +   A  LS++I I+  ++S+ GD S       ++ + Y   F+F  
Sbjct: 130 IYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRDEDKKNHYNYGWSFYFGA 189

Query: 123 VCFLVAFLLNVQSIRYY 139
           + F+VA  + V ++  Y
Sbjct: 190 LSFIVAETVGVLAVNIY 206


>sp|Q9JJV4|CCG4_MOUSE Voltage-dependent calcium channel gamma-4 subunit OS=Mus musculus
           GN=Cacng4 PE=1 SV=1
          Length = 327

 Score = 31.2 bits (69), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 65  VQTLRNNIMASTLLASTAIMLSSLIAIL--MTSSDGDRSTWFTFGDRSDFFYSIKFFFIL 122
           + + +NNI+ S  +   A  LS++I I+  ++S+ GD S       ++ + Y   F+F  
Sbjct: 130 IYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRDEDKKNHYNYGWSFYFGA 189

Query: 123 VCFLVAFLLNVQSIRYY 139
           + F+VA  + V ++  Y
Sbjct: 190 LSFIVAETVGVLAVNIY 206


>sp|Q8VHW9|CCG4_RAT Voltage-dependent calcium channel gamma-4 subunit OS=Rattus
           norvegicus GN=Cacng4 PE=1 SV=1
          Length = 327

 Score = 31.2 bits (69), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 65  VQTLRNNIMASTLLASTAIMLSSLIAIL--MTSSDGDRSTWFTFGDRSDFFYSIKFFFIL 122
           + + +NNI+ S  +   A  LS++I I+  ++S+ GD S       ++ + Y   F+F  
Sbjct: 130 IYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRDEDKKNHYNYGWSFYFGA 189

Query: 123 VCFLVAFLLNVQSIRYY 139
           + F+VA  + V ++  Y
Sbjct: 190 LSFIVAETVGVLAVNIY 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.331    0.142    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,164,136
Number of Sequences: 539616
Number of extensions: 3450027
Number of successful extensions: 9986
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9985
Number of HSP's gapped (non-prelim): 16
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)