Query 024720
Match_columns 263
No_of_seqs 115 out of 292
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04654 DUF599: Protein of un 100.0 8.6E-68 1.9E-72 469.9 21.9 210 9-222 1-213 (216)
2 COG3821 Predicted membrane pro 100.0 7.3E-58 1.6E-62 396.5 17.0 222 6-236 4-230 (234)
3 PF11808 DUF3329: Domain of un 61.7 22 0.00047 27.4 5.1 58 185-252 15-72 (90)
4 COG1288 Predicted membrane pro 51.1 25 0.00053 35.3 4.7 47 6-52 217-264 (481)
5 TIGR00985 3a0801s04tom mitocho 48.1 21 0.00045 30.5 3.2 28 11-38 12-39 (148)
6 PRK13823 conjugal transfer pro 38.7 43 0.00094 26.4 3.5 31 8-38 42-72 (94)
7 PF02064 MAS20: MAS20 protein 38.0 11 0.00023 31.1 0.0 28 11-38 2-29 (121)
8 KOG4056 Translocase of outer m 35.4 45 0.00098 28.3 3.3 29 10-38 13-41 (143)
9 COG5268 TrbD Type IV secretory 31.3 43 0.00094 26.2 2.4 32 7-38 48-79 (93)
10 COG3462 Predicted membrane pro 30.4 44 0.00095 27.3 2.4 43 173-216 30-72 (117)
11 PF05545 FixQ: Cbb3-type cytoc 28.2 78 0.0017 21.4 3.0 26 6-31 9-34 (49)
12 TIGR02106 cyd_oper_ybgT cyd op 24.4 1.5E+02 0.0033 18.7 3.5 18 191-208 3-20 (30)
13 PF13301 DUF4079: Protein of u 24.1 4.8E+02 0.01 22.7 8.7 31 69-99 82-112 (175)
14 COG4736 CcoQ Cbb3-type cytochr 23.8 90 0.0019 22.7 2.8 27 6-32 9-35 (60)
15 PRK10278 hypothetical protein; 23.6 2.8E+02 0.006 23.1 6.0 31 112-142 73-109 (130)
16 PRK14416 membrane protein; Pro 23.0 2E+02 0.0044 25.6 5.5 17 83-99 70-86 (200)
17 TIGR03750 conj_TIGR03750 conju 20.9 1.9E+02 0.0041 23.5 4.4 17 193-209 47-63 (111)
No 1
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=100.00 E-value=8.6e-68 Score=469.86 Aligned_cols=210 Identities=39% Similarity=0.651 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhCCCCCHhhHHHhhHHHHHHHHHhhccccchhHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024720 9 YILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLSSL 88 (263)
Q Consensus 9 ~iav~~~l~~~~gYh~~l~~~~~~~p~~t~~g~~~~~R~~Wm~~m~~r~~r~~il~vqtLrn~i~sstFfASTsilli~G 88 (263)
++++|+|++||+|||+|++++.+++| |++|+|+++|++||++|++||+ +|+|+|+|||++|++||||||||++++|
T Consensus 1 ~~av~~~l~~~~gY~~~l~~~~~~~p--t~~~~~~~~R~~W~~~m~~r~~--~ildvq~Lrn~~~~~tffASTailli~g 76 (216)
T PF04654_consen 1 LIAVPLFLLCWVGYHLYLERRVRRRP--TLSGIMNQYRRAWMRQMMDRKN--RILDVQTLRNLIMSATFFASTAILLIGG 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999 8999999999999999998864 5999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcc--cccccCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccccchhhHHH
Q 024720 89 IAILMTSSDGDRST--WFTFGDR-SDFFYSIKFFFILVCFLVAFLLNVQSIRYYSHAGILINVPFKKMSENVHHHQLTAE 165 (263)
Q Consensus 89 l~all~s~~~~~~~--~~~~g~~-~~~~~~lKll~Ll~if~~AFf~F~wS~R~~n~~~~Lig~p~~~~~~~~~~~~~~~~ 165 (263)
++++++++|+.... +++++.+ ++..+|+|++++++||++|||||+||+||||||+||||+||++++.++++++..++
T Consensus 77 ~~all~~~~~~~~~~~~~~~~~~~s~~~~~lK~l~ll~~f~~aFf~f~~s~R~~n~~~~li~~~p~~~~~~~~~~~~~~~ 156 (216)
T PF04654_consen 77 LLALLGSTDKLSSVASDLPFGGSASRFLFELKLLLLLVIFLYAFFKFTWSIRQYNHASFLIGAPPEPPEGDEAEREAFAE 156 (216)
T ss_pred HHHHHcCcHHHhhHHhhCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHH
Confidence 99999999998754 8899888 66899999999999999999999999999999999999988654433566789999
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHhccccc
Q 024720 166 FVARTVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLDVTFTFQ 222 (263)
Q Consensus 166 ~va~~l~ra~~~~n~GlRayYfalall~W~~gP~~l~~~tv~vV~vLy~rdf~S~~~ 222 (263)
++++++++|+++||.|+|+|||++|+++|++||++++++|+++|.+||+|||.|+.+
T Consensus 157 ~~a~~~~~a~~~fn~GlRa~yfal~~l~W~~gP~~~~~~t~~vv~~L~~rdf~S~~~ 213 (216)
T PF04654_consen 157 YAARVLNRAGNFFNRGLRAYYFALPLLLWFFGPWALIAATVLVVAVLYRRDFRSRAR 213 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchHh
Confidence 999999999999999999999999999999999999999999999999999999987
No 2
>COG3821 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.3e-58 Score=396.47 Aligned_cols=222 Identities=18% Similarity=0.229 Sum_probs=202.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhCCCCCHhhHHHhhHHHHHHHHHhhccccchhHHHHhhhhhHHHHHHHHHHHHH
Q 024720 6 LLDYILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDASKNGVLAVQTLRNNIMASTLLASTAIML 85 (263)
Q Consensus 6 ~lD~iav~~~l~~~~gYh~~l~~~~~~~p~~t~~g~~~~~R~~Wm~~m~~r~~r~~il~vqtLrn~i~sstFfASTsill 85 (263)
..|++++.+|++||++|..+..++-+.+.+++. .||.+|++||++|..||.| +.|.|.+.|++++++|||||++++
T Consensus 4 l~d~lA~~~F~~~W~~yt~~~~~kg~srasL~t--~m~~~R~~Wmr~~l~Rdir--iiDtqii~glq~gtaFFASstlia 79 (234)
T COG3821 4 LLDLLALAVFLLCWLLYTPASTRKGFSRASLNT--AMNEIRRRWMRNMLVRDIR--IIDTQIIGGLQNGTAFFASSTLIA 79 (234)
T ss_pred HHHHHHHHHHHHHHHhhhHHhccCccchhHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHhHhccchHHHHhhHHH
Confidence 469999999999999999999888888888888 9999999999999999866 999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcc--cccccCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CCC-CCcccccch
Q 024720 86 SSLIAILMTSSDGDRST--WFTFGDRSD-FFYSIKFFFILVCFLVAFLLNVQSIRYYSHAGILINV-PFK-KMSENVHHH 160 (263)
Q Consensus 86 i~Gl~all~s~~~~~~~--~~~~g~~~~-~~~~lKll~Ll~if~~AFf~F~wS~R~~n~~~~Lig~-p~~-~~~~~~~~~ 160 (263)
++|+++++|++|++..+ |+|+...++ ..+|+|+++|.++|.|+||||.||+||||||+++||+ |.. +...+++++
T Consensus 80 lgg~falLgatD~v~~v~~dLp~v~~~sr~afelKv~~l~~~f~ysffkFgWs~RlfNyc~iliGa~PM~~~~~~~~~~a 159 (234)
T COG3821 80 LGGCFALLGATDRVLSVLSDLPFVAKASRTAFELKVGGLTVLFAYSFFKFGWSYRLFNYCSILIGAIPMWADNAVDAEAA 159 (234)
T ss_pred HHHHHHHHcCchhHHHHHcCCchhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccccchHHH
Confidence 99999999999998754 999987755 6889999999999999999999999999999999995 543 333345667
Q ss_pred hhHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHhccccccccccccccCCCcc
Q 024720 161 QLTAEFVARTVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLDVTFTFQFGLGVGVSKDHNQD 236 (263)
Q Consensus 161 ~~~~~~va~~l~ra~~~~n~GlRayYfalall~W~~gP~~l~~~tv~vV~vLy~rdf~S~~~~~~~~~~~~~~~~~ 236 (263)
+..++++++++..|.++||.|+|+||||+++++||++|++|+++|++++.+|+||||+|+.| .++.+.++.
T Consensus 160 e~aaerai~mn~lAak~FN~GlRa~ffsig~lgWfi~p~vFm~~T~~vilvL~rRqf~S~ar-----~al~eqp~~ 230 (234)
T COG3821 160 ERAAERAIRMNILAAKHFNAGLRAYFFSIGYLGWFISPYVFMLSTLGVILVLLRRQFFSEAR-----RALIEQPRG 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCCC
Confidence 78889999999999999999999999999999999999999999999999999999999999 777666553
No 3
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=61.66 E-value=22 Score=27.40 Aligned_cols=58 Identities=19% Similarity=0.425 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHhccccccccccccccCCCcccccccccCCCCchhhh
Q 024720 185 FYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLDVTFTFQFGLGVGVSKDHNQDEELGRSAVDLGSVWEY 252 (263)
Q Consensus 185 yYfalall~W~~gP~~l~~~tv~vV~vLy~rdf~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (263)
++....+++|++|.++..++..+++.+.++.-.-.+-. .=+.++...+ +|+...+||.
T Consensus 15 ~~l~~~lvG~~~g~~~~~l~~~l~~~l~wh~~~l~rL~-----~WL~~~~~~~-----pP~~~G~W~~ 72 (90)
T PF11808_consen 15 LLLAAALVGWLFGHLWWALLLGLLLYLFWHLYQLYRLE-----RWLRNPRKDE-----PPEGSGIWGE 72 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCCC-----CCCCCCcHHH
Confidence 45666788899999876666555555544333222211 2223333221 5566678874
No 4
>COG1288 Predicted membrane protein [Function unknown]
Probab=51.13 E-value=25 Score=35.26 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhCCCCCH-hhHHHhhHHHHHHH
Q 024720 6 LLDYILVPFGLLIMAAYHVWLLYRIVKHPTKTV-IGVNAINRRFWVQA 52 (263)
Q Consensus 6 ~lD~iav~~~l~~~~gYh~~l~~~~~~~p~~t~-~g~~~~~R~~Wm~~ 52 (263)
.+-++...++.++-+.|-.|+..+.||+|+.+. .....++|+.|..+
T Consensus 217 ~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~ 264 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVE 264 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhc
Confidence 456778888999999999999999999999987 55556666666644
No 5
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=48.15 E-value=21 Score=30.48 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 024720 11 LVPFGLLIMAAYHVWLLYRIVKHPTKTV 38 (263)
Q Consensus 11 av~~~l~~~~gYh~~l~~~~~~~p~~t~ 38 (263)
+.....++.+||.+|..|+.|.+|..--
T Consensus 12 ~ag~a~~~flgYciYFD~KRR~dPdFRk 39 (148)
T TIGR00985 12 AAGIAAAAFLGYAIYFDYKRRNDPDFRK 39 (148)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHH
Confidence 3445678899999999999999998544
No 6
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=38.70 E-value=43 Score=26.37 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 024720 8 DYILVPFGLLIMAAYHVWLLYRIVKHPTKTV 38 (263)
Q Consensus 8 D~iav~~~l~~~~gYh~~l~~~~~~~p~~t~ 38 (263)
++.++..++++|+.=|..+.+..|++|...-
T Consensus 42 ~~~a~~~gl~lw~v~h~~l~~mAK~DP~~~~ 72 (94)
T PRK13823 42 TWRAALFGIALWFGALFALRLMAKADPKMRH 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3456778999999999999999999997544
No 7
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.03 E-value=11 Score=31.08 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 024720 11 LVPFGLLIMAAYHVWLLYRIVKHPTKTV 38 (263)
Q Consensus 11 av~~~l~~~~gYh~~l~~~~~~~p~~t~ 38 (263)
++.++.+..+||.+|..|+.|.+|..--
T Consensus 2 ~ag~a~~~~lgYciYFD~KRR~dP~frk 29 (121)
T PF02064_consen 2 AAGVAAAAFLGYCIYFDYKRRSDPDFRK 29 (121)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHhhcccccccChHHHH
Confidence 4556677899999999999999999544
No 8
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.41 E-value=45 Score=28.29 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 024720 10 ILVPFGLLIMAAYHVWLLYRIVKHPTKTV 38 (263)
Q Consensus 10 iav~~~l~~~~gYh~~l~~~~~~~p~~t~ 38 (263)
++-.+..+..+||.+|..++.|.+|+.--
T Consensus 13 I~agiag~af~gYciYFd~KRrsdP~fk~ 41 (143)
T KOG4056|consen 13 IAAGIAGLAFIGYCIYFDKKRRSDPDFKK 41 (143)
T ss_pred HHHHHHHHHHHHHHhhcccccccChhHHH
Confidence 44556778899999999999999998655
No 9
>COG5268 TrbD Type IV secretory pathway, TrbD component [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.30 E-value=43 Score=26.18 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhCCCCCH
Q 024720 7 LDYILVPFGLLIMAAYHVWLLYRIVKHPTKTV 38 (263)
Q Consensus 7 lD~iav~~~l~~~~gYh~~l~~~~~~~p~~t~ 38 (263)
.|+++..+++++|+.=|....+..|.+|..-.
T Consensus 48 q~Wiaa~fGl~iW~va~a~~r~~Ak~DP~~r~ 79 (93)
T COG5268 48 QLWIAAGFGLGIWFVAHALARWLAKADPLFRF 79 (93)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcChHHHH
Confidence 47888889999999999999999999996433
No 10
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.38 E-value=44 Score=27.29 Aligned_cols=43 Identities=21% Similarity=0.466 Sum_probs=29.3
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhH
Q 024720 173 RGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCCVVLVFLLYFLD 216 (263)
Q Consensus 173 ra~~~~n~GlRayYfalall~W~~gP~~l~~~tv~vV~vLy~rd 216 (263)
-++.||+.|.|+.--+ -+-.|++-|+.-+++-+.+|..+|+.-
T Consensus 30 ~gg~~y~~gy~gm~GG-~yGm~lImpI~~~vvli~lvvfm~~~~ 72 (117)
T COG3462 30 HGGAFYPGGYRGMMGG-LYGMWLIMPIFWAVVLIFLVVFMFYIL 72 (117)
T ss_pred ccCcccCCCccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776443222 234699999998888888888777654
No 11
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.17 E-value=78 Score=21.40 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhh
Q 024720 6 LLDYILVPFGLLIMAAYHVWLLYRIV 31 (263)
Q Consensus 6 ~lD~iav~~~l~~~~gYh~~l~~~~~ 31 (263)
..+.+...+++++.+|+-+|...+.+
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45778888999999999999875544
No 12
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.37 E-value=1.5e+02 Score=18.67 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=11.0
Q ss_pred HHHHhHhhHHHHHHHHHH
Q 024720 191 LFLWIFGPIPMFLCCVVL 208 (263)
Q Consensus 191 ll~W~~gP~~l~~~tv~v 208 (263)
+++|++|-.......++.
T Consensus 3 YfaWilG~~lA~~~~v~~ 20 (30)
T TIGR02106 3 YFAWILGTLLACAFGVLN 20 (30)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 468999976544444333
No 13
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=24.14 E-value=4.8e+02 Score=22.67 Aligned_cols=31 Identities=13% Similarity=-0.110 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024720 69 RNNIMASTLLASTAIMLSSLIAILMTSSDGD 99 (263)
Q Consensus 69 rn~i~sstFfASTsilli~Gl~all~s~~~~ 99 (263)
++...+...++...+..++|..+...+.+++
T Consensus 82 ~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~l 112 (175)
T PF13301_consen 82 RHYRLGFALLAFMGLGALGGQLGTYRQNGKL 112 (175)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHcCCCC
Confidence 3456688888899999999999998887764
No 14
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.79 E-value=90 Score=22.70 Aligned_cols=27 Identities=15% Similarity=-0.167 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhh
Q 024720 6 LLDYILVPFGLLIMAAYHVWLLYRIVK 32 (263)
Q Consensus 6 ~lD~iav~~~l~~~~gYh~~l~~~~~~ 32 (263)
..|-+.+.++++|.++|-+|..++.+|
T Consensus 9 ~a~a~~t~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 9 FADAWGTIAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 567788889999999999888665544
No 15
>PRK10278 hypothetical protein; Provisional
Probab=23.60 E-value=2.8e+02 Score=23.09 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHHHHHH------HHHHHHhhhh
Q 024720 112 FFYSIKFFFILVCFLVAFLLN------VQSIRYYSHA 142 (263)
Q Consensus 112 ~~~~lKll~Ll~if~~AFf~F------~wS~R~~n~~ 142 (263)
.-..-|++++++..+.+++.| +...|...+.
T Consensus 73 ~WLt~Kl~~lv~YI~lg~~Al~~k~~~~~~~R~~af~ 109 (130)
T PRK10278 73 QWLTEKLFGVIIYIVLGFIALDYRRMRSQQARFIAFP 109 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 344789999999999998887 5667776655
No 16
>PRK14416 membrane protein; Provisional
Probab=22.97 E-value=2e+02 Score=25.64 Aligned_cols=17 Identities=6% Similarity=-0.068 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCCCC
Q 024720 83 IMLSSLIAILMTSSDGD 99 (263)
Q Consensus 83 illi~Gl~all~s~~~~ 99 (263)
...++|+.+++|...+.
T Consensus 70 ~~~~~~~aavlGH~~pi 86 (200)
T PRK14416 70 WVILTGFAAVIGHNWSV 86 (200)
T ss_pred HHHHHHHHHHHcccChh
Confidence 34567888999986654
No 17
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.92 E-value=1.9e+02 Score=23.53 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=7.5
Q ss_pred HHhHhhHHHHHHHHHHH
Q 024720 193 LWIFGPIPMFLCCVVLV 209 (263)
Q Consensus 193 ~W~~gP~~l~~~tv~vV 209 (263)
.|.+.|.-++++.+++|
T Consensus 47 ~w~~~p~~~lig~~l~v 63 (111)
T TIGR03750 47 PWALIPTGALLGPILVV 63 (111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
Done!