Query 024720
Match_columns 263
No_of_seqs 115 out of 292
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 31.2 67 0.0023 21.8 4.2 17 206-222 27-43 (54)
2 1waz_A MERF; protein structure 10.3 46 0.0016 22.0 -0.5 22 5-26 18-41 (46)
3 2l8s_A Integrin alpha-1; trans 10.2 2.7E+02 0.0093 18.8 3.4 17 206-222 24-40 (54)
4 2ki9_A Cannabinoid receptor 2; 9.3 70 0.0024 18.5 0.1 20 9-28 9-28 (33)
5 3h3g_B Parathyroid hormone-rel 7.7 2.8E+02 0.0095 15.8 2.1 16 41-56 4-19 (24)
6 2k1a_A Integrin alpha-IIB; sin 7.5 3.6E+02 0.012 17.2 2.9 16 206-221 25-40 (42)
7 2k1k_A Ephrin type-A receptor 6.4 3.2E+02 0.011 16.9 2.3 20 196-215 18-37 (38)
8 2jo1_A Phospholemman; FXYD1, N 5.9 8E+02 0.027 17.5 5.5 11 232-242 50-60 (72)
9 2h3o_A MERF; membrane protein, 5.5 1.1E+02 0.0039 21.3 -0.3 28 6-34 31-58 (61)
10 1et1_A Parathyroid hormone; he 5.2 4.6E+02 0.016 16.1 2.3 16 41-56 15-30 (34)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.16 E-value=67 Score=21.84 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHhccccc
Q 024720 206 VVLVFLLYFLDVTFTFQ 222 (263)
Q Consensus 206 v~vV~vLy~rdf~S~~~ 222 (263)
.+++.+||+.-|..+-+
T Consensus 27 ~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 27 TILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHcCcccCCC
Confidence 46788999999988666
No 2
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=10.30 E-value=46 Score=22.00 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=13.5
Q ss_pred cchhHHHHHH--HHHHHHHHHHHH
Q 024720 5 QLLDYILVPF--GLLIMAAYHVWL 26 (263)
Q Consensus 5 ~~lD~iav~~--~l~~~~gYh~~l 26 (263)
.++|++++|. ++.....|..|.
T Consensus 18 gyLDyVLlPaLa~Fi~lt~ya~~r 41 (46)
T 1waz_A 18 GYLDYVLLPALAIFIGLTIYAIQR 41 (46)
T ss_dssp SCCCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789888883 444445555544
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.19 E-value=2.7e+02 Score=18.83 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHhccccc
Q 024720 206 VVLVFLLYFLDVTFTFQ 222 (263)
Q Consensus 206 v~vV~vLy~rdf~S~~~ 222 (263)
.+++.+||+..|..+.+
T Consensus 24 ~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 24 MLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCcccCCC
Confidence 46788999999988665
No 4
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=9.30 E-value=70 Score=18.49 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024720 9 YILVPFGLLIMAAYHVWLLY 28 (263)
Q Consensus 9 ~iav~~~l~~~~gYh~~l~~ 28 (263)
.+.+..|+.||.=||.....
T Consensus 9 ~~vv~~F~icW~P~~i~~~~ 28 (33)
T 2ki9_A 9 GLVLAVLLICWFPVLALMAH 28 (33)
T ss_dssp HHHHHHHTTTSSHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 34566899999999987643
No 5
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=7.66 E-value=2.8e+02 Score=15.80 Aligned_cols=16 Identities=19% Similarity=0.767 Sum_probs=12.9
Q ss_pred HHHhhHHHHHHHHHhh
Q 024720 41 VNAINRRFWVQAMMED 56 (263)
Q Consensus 41 ~~~~~R~~Wm~~m~~r 56 (263)
+..-.|+-|.++++++
T Consensus 4 ~Q~~rRr~wL~~ll~~ 19 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAE 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456799999999976
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=7.50 E-value=3.6e+02 Score=17.16 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHhcccc
Q 024720 206 VVLVFLLYFLDVTFTF 221 (263)
Q Consensus 206 v~vV~vLy~rdf~S~~ 221 (263)
.+++.+||+..|..+-
T Consensus 25 ~li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 25 TILVLAMWKVGFFKRN 40 (42)
T ss_dssp HHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHcCcccCC
Confidence 3567889998887643
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=6.45 E-value=3.2e+02 Score=16.87 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=9.4
Q ss_pred HhhHHHHHHHHHHHHHHHHh
Q 024720 196 FGPIPMFLCCVVLVFLLYFL 215 (263)
Q Consensus 196 ~gP~~l~~~tv~vV~vLy~r 215 (263)
+|++.-++..+.+++.+|||
T Consensus 18 vG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHeec
Confidence 34444444444444555544
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=5.90 E-value=8e+02 Score=17.45 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=7.1
Q ss_pred CCCcccccccc
Q 024720 232 DHNQDEELGRS 242 (263)
Q Consensus 232 ~~~~~~~~~~~ 242 (263)
..+++||+|-.
T Consensus 50 ~~~p~~e~g~~ 60 (72)
T 2jo1_A 50 TGEPDEEEGTF 60 (72)
T ss_dssp SSCCCTTTSTH
T ss_pred CCCCccccccH
Confidence 56777777643
No 9
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=5.52 E-value=1.1e+02 Score=21.26 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhCC
Q 024720 6 LLDYILVPFGLLIMAAYHVWLLYRIVKHP 34 (263)
Q Consensus 6 ~lD~iav~~~l~~~~gYh~~l~~~~~~~p 34 (263)
++|++++|. +...+|..+|-.++.+|..
T Consensus 31 wLd~vl~P~-l~~figl~~Y~~~r~~~~~ 58 (61)
T 2h3o_A 31 YLDYVLLPA-LAIFIGLTIYAIQRKRQAD 58 (61)
T ss_dssp HSSSSCCTT-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhhc
Confidence 566666652 1222366666666666554
No 10
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=5.17 E-value=4.6e+02 Score=16.06 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHHhh
Q 024720 41 VNAINRRFWVQAMMED 56 (263)
Q Consensus 41 ~~~~~R~~Wm~~m~~r 56 (263)
+....|+.|.+..+++
T Consensus 15 ~q~~~R~~WLq~~l~~ 30 (34)
T 1et1_A 15 LNSMERVEWLRKKLQD 30 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3456799999988875
Done!