Query 024720
Match_columns 263
No_of_seqs 115 out of 292
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 14.0 34 0.0025 20.1 1.3 23 190-212 8-30 (38)
2 d1twfj_ a.4.11.1 (J:) RNA poly 4.8 98 0.0071 20.1 0.7 12 245-256 13-24 (65)
3 d1eysm_ f.26.1.1 (M:) M (mediu 4.5 7.1E+02 0.052 20.4 6.3 76 128-208 206-283 (318)
4 d1kyqa2 e.37.1.1 (A:151-273) B 3.7 2.1E+02 0.015 20.4 1.9 15 43-57 67-81 (123)
5 d1k0ma1 a.45.1.1 (A:92-240) Ch 3.3 2.5E+02 0.018 19.8 2.0 44 6-58 84-127 (149)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 3.0 4.7E+02 0.034 14.5 3.3 16 193-208 4-19 (34)
7 d1kqfc_ f.21.1.1 (C:) Formate 2.8 2E+02 0.014 21.4 0.9 44 14-59 159-209 (216)
8 d1wi1a_ b.55.1.1 (A:) Calcium- 2.8 2.8E+02 0.02 18.0 1.7 17 39-55 91-107 (126)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 2.6 5.9E+02 0.043 18.2 3.4 60 74-135 31-90 (130)
10 d1ef4a_ a.4.11.1 (A:) RNA poly 2.6 1.6E+02 0.011 18.5 0.0 11 246-256 13-23 (55)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=14.00 E-value=34 Score=20.06 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=11.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 024720 190 PLFLWIFGPIPMFLCCVVLVFLL 212 (263)
Q Consensus 190 all~W~~gP~~l~~~tv~vV~vL 212 (263)
.++-|++-|+.-.+.-+++..+|
T Consensus 8 syLPwI~iPvv~wl~p~vvMglL 30 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMPTVVMGLL 30 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHH
Confidence 34556666665444444443333
No 2
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.82 E-value=98 Score=20.11 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=9.3
Q ss_pred CCCchhhhhhhc
Q 024720 245 DLGSVWEYYEET 256 (263)
Q Consensus 245 ~~~~~~~~~~~~ 256 (263)
..|+.||+|.|.
T Consensus 13 vi~~k~~~y~~~ 24 (65)
T d1twfj_ 13 VVGDKWESYLNL 24 (65)
T ss_dssp BCTTCHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 468899999763
No 3
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.54 E-value=7.1e+02 Score=20.38 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhhccccccCCCC--CcccccchhhHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHH
Q 024720 128 AFLLNVQSIRYYSHAGILINVPFKK--MSENVHHHQLTAEFVARTVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFLCC 205 (263)
Q Consensus 128 AFf~F~wS~R~~n~~~~Lig~p~~~--~~~~~~~~~~~~~~va~~l~ra~~~~n~GlRayYfalall~W~~gP~~l~~~t 205 (263)
+|+ |.-++=+-.|-+-..++...+ ++.++.+.+..+..-+...=|=-.-||.|.++.-+ ++|++.=...+-+.
T Consensus 206 afl-~gsaLl~AmHGatIla~~~~g~~~e~~~~~~~~Ta~era~lFwR~~~Gy~~~~~~IHr----~~~~~av~~~~~sa 280 (318)
T d1eysm_ 206 AFL-YGSALLFAMHGATILSVSRFGGDREIDQITHRGTAAEGAALFWRWTMGFNATMESIHR----WAWWCAVLTVITAG 280 (318)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTTTTTTTCHHHHHHSCCHHHHHHHHHHHHHHSCCCCTTHHHH----HHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhhhhheeeeccCCCccccccccCCchHHHHHHHHHHHHhhCcccHHHHH----HHHHHHHHHHHhhh
Confidence 444 666666677888777753322 21122222222222233344433445577776544 56665444444444
Q ss_pred HHH
Q 024720 206 VVL 208 (263)
Q Consensus 206 v~v 208 (263)
+.+
T Consensus 281 igI 283 (318)
T d1eysm_ 281 IGI 283 (318)
T ss_dssp HHH
T ss_pred eeE
Confidence 333
No 4
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.75 E-value=2.1e+02 Score=20.42 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=12.3
Q ss_pred HhhHHHHHHHHHhhc
Q 024720 43 AINRRFWVQAMMEDA 57 (263)
Q Consensus 43 ~~~R~~Wm~~m~~r~ 57 (263)
...|..|++++++--
T Consensus 67 ~~~Rm~W~~qi~e~~ 81 (123)
T d1kyqa2 67 VKYRMDWARRCTDLF 81 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHH
Confidence 368999999999754
No 5
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.33 E-value=2.5e+02 Score=19.77 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhCCCCCHhhHHHhhHHHHHHHHHhhcc
Q 024720 6 LLDYILVPFGLLIMAAYHVWLLYRIVKHPTKTVIGVNAINRRFWVQAMMEDAS 58 (263)
Q Consensus 6 ~lD~iav~~~l~~~~gYh~~l~~~~~~~p~~t~~g~~~~~R~~Wm~~m~~r~~ 58 (263)
..|+.+.|+..-+...|+.+-.+. .+.. --.=..|+++|.+|+.
T Consensus 84 ~aDi~l~p~l~r~~~~~~~~~~~~---~~~~------~p~l~~w~~~l~~rps 127 (149)
T d1k0ma1 84 LADCNLLPKLHIVQVVCKKYRGFT---IPEA------FRGVHRYLSNAYAREE 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC---CCTT------CHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccch---hhhc------ChHHHHHHHHHHCChH
Confidence 468888888777766665443221 1111 1123579999999874
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.05 E-value=4.7e+02 Score=14.47 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=9.9
Q ss_pred HHhHhhHHHHHHHHHH
Q 024720 193 LWIFGPIPMFLCCVVL 208 (263)
Q Consensus 193 ~W~~gP~~l~~~tv~v 208 (263)
+|+++.+.-++.-.++
T Consensus 4 LWlv~tv~G~~vi~~v 19 (34)
T d2axtj1 4 LWIVATVAGMGVIVIV 19 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeeehhhhhhHhhe
Confidence 5888877755544333
No 7
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=2e+02 Score=21.44 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCCH-------hhHHHhhHHHHHHHHHhhccc
Q 024720 14 FGLLIMAAYHVWLLYRIVKHPTKTV-------IGVNAINRRFWVQAMMEDASK 59 (263)
Q Consensus 14 ~~l~~~~gYh~~l~~~~~~~p~~t~-------~g~~~~~R~~Wm~~m~~r~~r 59 (263)
+.++..+.-|+|+... +++.... ..-..+++..|.+++-+++++
T Consensus 159 ~l~~~~vi~Hvy~a~~--~~~~l~~M~tG~v~~~~~~~~h~~w~~~~~~~~~~ 209 (216)
T d1kqfc_ 159 IILIHAILIHMYMAFW--VKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAK 209 (216)
T ss_dssp HHHHHHHHHHHHHHHH--BTTHHHHHHTCEEEHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--cccccchhheeeccHHHHHHHHHHHHHHHHhccCC
Confidence 4455556668888642 2333211 134667778999999887654
No 8
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.81 E-value=2.8e+02 Score=18.02 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=13.7
Q ss_pred hhHHHhhHHHHHHHHHh
Q 024720 39 IGVNAINRRFWVQAMME 55 (263)
Q Consensus 39 ~g~~~~~R~~Wm~~m~~ 55 (263)
..-..+.|.+||+.+.+
T Consensus 91 ~A~s~~e~~~Wv~al~~ 107 (126)
T d1wi1a_ 91 ASDDEQDRILWVQAMYR 107 (126)
T ss_dssp ECSSHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHH
Confidence 44677899999999865
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.62 E-value=5.9e+02 Score=18.21 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 024720 74 ASTLLASTAIMLSSLIAILMTSSDGDRSTWFTFGDRSDFFYSIKFFFILVCFLVAFLLNVQS 135 (263)
Q Consensus 74 sstFfASTsilli~Gl~all~s~~~~~~~~~~~g~~~~~~~~lKll~Ll~if~~AFf~F~wS 135 (263)
++-+.+=-|+.++-|++++..+.+.-.+- ..| -+++..+-+.++.|+..+..+.--|..+
T Consensus 31 T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f-v~f-lqnP~vv~lniiaLaa~L~Ha~TwF~l~ 90 (130)
T d1kf6c_ 31 TAVPAVWFSIELIFGLFALKNGPEAWAGF-VDF-LQNPVIVIINLITLAAALLHTKTWFELA 90 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHH-HTSSHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677899999999987765432211 112 2355677899999999999987777665
No 10
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.62 E-value=1.6e+02 Score=18.46 Aligned_cols=11 Identities=9% Similarity=0.416 Sum_probs=8.4
Q ss_pred CCchhhhhhhc
Q 024720 246 LGSVWEYYEET 256 (263)
Q Consensus 246 ~~~~~~~~~~~ 256 (263)
.|..||+|.+.
T Consensus 13 ia~k~~~y~~~ 23 (55)
T d1ef4a_ 13 VSAYFNEYQRR 23 (55)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56789999763
Done!