BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024721
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 27/215 (12%)
Query: 63 VLMISDIYGDEPPIYRSVADKVAGAGFLVVAPDFF--HGDAANPSNPKYDKDTWRKNHTT 120
V+++ +I+G I R + ++A G+L +AP+ + GD N +D T K +
Sbjct: 35 VIVVQEIFGVHEHI-RDLCRRLAQEGYLAIAPELYFRQGD----PNEYHDIPTLFKELVS 89
Query: 121 D----KGYEDAKPVIAALKEKGVSA--VGAAGFCWGGKVA-VKLASNQDVQAAVLLHPSN 173
+ D V + G A + GFCWGG++ + A N ++AAV +
Sbjct: 90 KVPDAQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKL 149
Query: 174 VTEDEIKVVKVPIAV----------LGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYP 223
V E + K P+ + L +D +P ++ + L A +V YP
Sbjct: 150 VGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAEIV-VYP 208
Query: 224 GVCHGWTVRYFVNDTFAVNSAAEAHEDMINWFEKH 258
H + Y ++ SA + + + WF ++
Sbjct: 209 EADHAFNADY--RASYHEESAKDGWQRXLAWFAQY 241
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 69 IYGDEPPIYRSVADKVAGAGFLVVAPDFFHGDAANPSNPKYDKDTWRKNHTTDKGYE--- 125
I G E P+ + V D AG + P G A + + KD ++ Y+
Sbjct: 71 IVGPEAPLVKGVVDTFRAAGLKIFGPT--AGAAQLEGSKAFTKDFLARHKIPTAEYQNFT 128
Query: 126 DAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQAAV 167
+ +P +A L+EKG V A GK + + ++ +AAV
Sbjct: 129 EVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAV 170
>pdb|1YGO|A Chain A, Solution Structure Of The Pelle Death Domain
Length = 110
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 112 DTWRKNHTTDKGYEDAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQAAVLLHP 171
D W++ T K Y D I++ K++G SA WGG+ N VQ L
Sbjct: 32 DVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQY------NHTVQTLFALFK 85
Query: 172 SNVTEDEIKVVK 183
+ ++++K
Sbjct: 86 KLKLHNAMRLIK 97
>pdb|1D2Z|A Chain A, Three-Dimensional Structure Of A Complex Between The Death
Domains Of Pelle And Tube
pdb|1D2Z|C Chain C, Three-Dimensional Structure Of A Complex Between The Death
Domains Of Pelle And Tube
pdb|1IK7|A Chain A, Crystal Structure Of The Uncomplexed Pelle Death Domain
pdb|1IK7|B Chain B, Crystal Structure Of The Uncomplexed Pelle Death Domain
Length = 108
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 112 DTWRKNHTTDKGYEDAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQAAVLLHP 171
D W++ T K Y D I++ K++G SA WGG+ N VQ L
Sbjct: 32 DVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQY------NHTVQTLFALFK 85
Query: 172 SNVTEDEIKVVK 183
+ ++++K
Sbjct: 86 KLKLHNAMRLIK 97
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 71/209 (33%), Gaps = 39/209 (18%)
Query: 49 LKAYVTGPPHSKKAVLMISDIYGDEPPIYRSVADKVAGAGFLVVAPDFFHGDAANPSNPK 108
+ A PP + ++++ + + +R +AGAG+ VVA D
Sbjct: 21 IHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAID----------QRG 70
Query: 109 YDKDTWRKNHTTDKGYEDAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQAAVL 168
Y + + + + E V+ L G G WG VA A
Sbjct: 71 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFA---------W 121
Query: 169 LHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVCHG 228
LHP + + VP A G GLP + F E +P HL PG
Sbjct: 122 LHPDRCA--GVVGISVPFAGRGV---IGLPGSP---FGE---RRPSDYHLELAGPG---- 166
Query: 229 WTVRYFVNDTFAVNSA--AEAHEDMINWF 255
R + D FAV E ED+ W
Sbjct: 167 ---RVWYQDYFAVQDGIITEIEEDLRGWL 192
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 71/209 (33%), Gaps = 39/209 (18%)
Query: 49 LKAYVTGPPHSKKAVLMISDIYGDEPPIYRSVADKVAGAGFLVVAPDFFHGDAANPSNPK 108
+ A PP + ++++ + + +R +AGAG+ VVA D
Sbjct: 15 IHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAID----------QRG 64
Query: 109 YDKDTWRKNHTTDKGYEDAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQAAVL 168
Y + + + + E V+ L G G WG VA A
Sbjct: 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFA---------W 115
Query: 169 LHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVCHG 228
LHP + + VP A G GLP + F E +P HL PG
Sbjct: 116 LHPDRCA--GVVGISVPFAGRGV---IGLPGSP---FGE---RRPSDYHLELAGPG---- 160
Query: 229 WTVRYFVNDTFAVNSA--AEAHEDMINWF 255
R + D FAV E ED+ W
Sbjct: 161 ---RVWYQDYFAVQDGIITEIEEDLRGWL 186
>pdb|4DTG|K Chain K, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 66
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 212 KPKFDHLVKTYPGVCHGWTVRYFVND 237
KP F L + PG+C G+ RYF N+
Sbjct: 3 KPDFCFLEED-PGICRGYITRYFYNN 27
>pdb|1TFX|C Chain C, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|D Chain D, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
Length = 58
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 212 KPKFDHLVKTYPGVCHGWTVRYFVND 237
KP F L + PG+C G+ RYF N+
Sbjct: 1 KPDFCFLEED-PGICRGYITRYFYNN 25
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 43 VTELGGLKAYVTGPPHSKKA-VLMISDIYGDEPPIYR-SVADKVAGAGFLVVAPDFFHGD 100
VT G LK H ++A V +I +EP Y ++ ++ AG L D GD
Sbjct: 122 VTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGD 181
Query: 101 AANPSNPKYDKDTWRKNHTTDKGYEDAKP 129
+ P +D W G E AKP
Sbjct: 182 SGGPLVSSDARDIWYLAGIVSWGDECAKP 210
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 64 LMISDIYG-DEPPIYRSVADKVAG-AGFLVVAPDFFHGDAANPSNPKYDKDTWRKNHTTD 121
+ +++IYG + I +++AG +G V H + A+ + + W NH
Sbjct: 203 MSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGAR 262
Query: 122 KGYE-----DAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQA 165
+ YE D P IA K V V +G G VA LAS DV A
Sbjct: 263 QLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 311
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 64 LMISDIYG-DEPPIYRSVADKVAG-AGFLVVAPDFFHGDAANPSNPKYDKDTWRKNHTTD 121
+ +++IYG + I +++AG +G V H + A+ + + W NH
Sbjct: 209 MSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGAR 268
Query: 122 KGYE-----DAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQA 165
+ YE D P IA K V V +G G VA LAS DV A
Sbjct: 269 QLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 317
>pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
Length = 318
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 167 VLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVC 226
VL NV +EI + G +++ G P + + F E+L A P D YP
Sbjct: 206 VLCGDLNVAHEEIDLRNPK----GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 261
Query: 227 HGWTVRYFVNDTFAVN 242
+ +T ++ + + N
Sbjct: 262 YAYTFWTYMMNARSKN 277
>pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 167 VLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVC 226
VL NV +EI + G +++ G P + + F E+L A P D YP
Sbjct: 205 VLCGDLNVAHEEIDLRNPK----GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 260
Query: 227 HGWTVRYFVNDTFAVN 242
+ +T ++ + + N
Sbjct: 261 YAYTFWTYMMNARSKN 276
>pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 167 VLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVC 226
VL NV +EI + G +++ G P + + F E+L A P D YP
Sbjct: 175 VLCGDLNVAHEEIDLRNPK----GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 230
Query: 227 HGWTVRYFVNDTFAVN 242
+ +T ++ + + N
Sbjct: 231 YAYTFWTYMMNARSKN 246
>pdb|3K9C|A Chain A, Crystal Structure Of Laci Transcriptional Regulator From
Rhodococcus Species.
pdb|3K9C|B Chain B, Crystal Structure Of Laci Transcriptional Regulator From
Rhodococcus Species
Length = 289
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 152 KVAVKLASNQDVQAAVLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYA 211
KVAV+ + +AA+LL + DE+ + + L R +GLP R D++
Sbjct: 56 KVAVQALXRERCEAAILL-GTRFDTDELGALADRVPALVVARASGLPGVGAVRGDDVAGI 114
Query: 212 KPKFDHLVK 220
DHL +
Sbjct: 115 TLAVDHLTE 123
>pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 167 VLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVC 226
VL NV +EI + G +++ G P + + F E+L A P D YP
Sbjct: 173 VLCGDLNVAHEEIDLRNPK----GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 228
Query: 227 HGWTVRYFVNDTFAVN 242
+ +T ++ + + N
Sbjct: 229 YAYTFWTYMMNARSKN 244
>pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 167 VLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVC 226
VL NV +EI + G +++ G P + + F E+L A P D YP
Sbjct: 167 VLCGDLNVAHEEIDLRNPK----GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 222
Query: 227 HGWTVRYFVNDTFAVN 242
+ +T ++ + + N
Sbjct: 223 YAYTFWTYMMNARSKN 238
>pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 167 VLLHPSNVTEDEIKVVKVPIAVLGAERDNGLPPAQMKRFDEILYAKPKFDHLVKTYPGVC 226
VL NV +EI + G +++ G P + + F E+L A P D YP
Sbjct: 164 VLCGDLNVAHEEIDLRNPK----GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTP 219
Query: 227 HGWTVRYFVNDTFAVN 242
+ +T ++ + + N
Sbjct: 220 YAYTFWTYMMNARSKN 235
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 64 LMISDIYGDEPPIY--RSVADKVAGAGFLVVAPDFFHGDAANPSNPKYDKDTWRKNHTTD 121
+ +++IYG R + + A +G V H + A+ + W NH
Sbjct: 209 MSLNNIYGASKQKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGAR 268
Query: 122 KGYE-----DAKPVIAALKEKGVSAVGAAGFCWGGKVAVKLASNQDVQA 165
+ YE D P IA K V V +G G VA LAS DV A
Sbjct: 269 QLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 317
>pdb|1ADZ|A Chain A, The Solution Structure Of The Second Kunitz Domain Of
Tissue Factor Pathway Inhibitor, Nmr, 30 Structures
Length = 71
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 223 PGVCHGWTVRYFVND 237
PG+C G+ RYF N+
Sbjct: 20 PGICRGYITRYFYNN 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,169,195
Number of Sequences: 62578
Number of extensions: 346996
Number of successful extensions: 1002
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 27
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)