BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024722
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 313 bits (801), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 187/264 (70%), Gaps = 2/264 (0%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
M ASL+RLHFHDCFVQGCDA EK A PN S RGFEVID++KSQ+E +C
Sbjct: 32 MGASLLRLHFHDCFVQGCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLA-ENLPSFTDGLDKLIST 119
PGVVSCADI+AVAARD+ A+GG SW V LGR+DSTTAS S A +LP+ L LIS
Sbjct: 92 PGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISA 151
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNL 179
F+ KG ++LV LSGAHTIGQAQC FR RIY N+SNID +A + + CP+ GGD+NL
Sbjct: 152 FSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIY-NESNIDPTYAKSLQANCPSVGGDTNL 210
Query: 180 SPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAM 239
SP D+ TPN FDN Y+ NL KKGLL SDQ LF+G STD V YS N + F +DF AM
Sbjct: 211 SPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAM 270
Query: 240 IKMADISPLTGTAGQIRRVCNIVN 263
IKM ++SPLTGT+GQIR C N
Sbjct: 271 IKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 259 bits (663), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/274 (50%), Positives = 181/274 (66%), Gaps = 17/274 (6%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
MAASLIRLHFHDCFV GCDA EK A+PN SARGFEVID++K+ +E C
Sbjct: 32 MAASLIRLHFHDCFVNGCDASLLLDGADS---EKLAIPNINSARGFEVIDTIKAAVENAC 88
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTF 120
PGVVSCADI+ +AARD+ GGP W V LGRKD A+++ A NLPS + LD +I+ F
Sbjct: 89 PGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKF 148
Query: 121 ATKGLNARDLVALSGAHTIGQAQCAFFRDRIY------NNQSNIDAGFASTRRRQCPANG 174
LN D+VALSGAHT GQA+CA F +R++ N + ++ S + CP G
Sbjct: 149 VAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPL-G 207
Query: 175 GDSNLS-PLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG----GSTDYIVDEYSKNPS 229
G+SN++ PLD T ++FDNNYFKNL++ KGLL+SDQ+LFS +T +V+ YS++ S
Sbjct: 208 GNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQS 267
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F DF AMI+M +IS G +G++R C ++N
Sbjct: 268 LFFRDFTCAMIRMGNIS--NGASGEVRTNCRVIN 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 174/272 (63%), Gaps = 9/272 (3%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+ ASLIRLHFHDCFV GCDA EKNA PN SARGF V+D++K+ LE C
Sbjct: 33 IGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLA-ENLPSFTDGLDKLIST 119
PGVVSC+D++A+A+ + GGPSWTV LGR+DS TA+ + A ++PS + L +
Sbjct: 93 PGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFK 152
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAFFRDRIY------NNQSNIDAGFASTRRRQCPAN 173
F+ GLN DLVALSGAHT G+A+C F +R++ N +++ ST ++ CP N
Sbjct: 153 FSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQN 212
Query: 174 GGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFS--GGSTDYIVDEYSKNPSKF 231
G S ++ LDL TP++FDNNYF NL GLL SDQ LFS G ST IV ++ N + F
Sbjct: 213 GSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLF 272
Query: 232 KSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
FA +MI M +ISPLTG+ G+IR C VN
Sbjct: 273 FQAFAQSMINMGNISPLTGSNGEIRLDCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/272 (49%), Positives = 173/272 (63%), Gaps = 9/272 (3%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+ ASLIRLHFHDCFV GCDA EKNA PN SARGF V+D++K+ LE C
Sbjct: 34 IGASLIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENAC 93
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLA-ENLPSFTDGLDKLIST 119
PGVVSC D++A+A++ + GGPSWTV LGR+D+ TA+++ A ++PS T GL + S
Sbjct: 94 PGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSK 153
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAFFRDRIYN--NQSNID----AGFASTRRRQCPAN 173
F+ GLN DLVALSGAHT G+A C F +R++N + N D ST + CP
Sbjct: 154 FSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQK 213
Query: 174 GGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFS--GGSTDYIVDEYSKNPSKF 231
G S + LDL TP++FDNNYF NL GLL SDQ LFS G +T IV ++ N + F
Sbjct: 214 GRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLF 273
Query: 232 KSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
FA +MI M +ISPLTG++G+IR C N
Sbjct: 274 FQAFAQSMINMGNISPLTGSSGEIRLDCKKTN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/272 (49%), Positives = 174/272 (63%), Gaps = 9/272 (3%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+ ASL+RLHFHDCFVQGCD E++ALPN S RG +V++ +K+ +E C
Sbjct: 32 IGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLA-ENLPSFTDGLDKLIST 119
P VSCADI+A+AA AS GGP W V LGR+DS TA+R+LA +NLP+ L +L ++
Sbjct: 92 PDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKAS 151
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAFFRDRIYN--NQSNIDAGFASTR----RRQCPAN 173
FA +GLN DLV LSG HT G+A+C+ F +R+YN N N D +T R +CP N
Sbjct: 152 FAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQN 211
Query: 174 GGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFS--GGSTDYIVDEYSKNPSKF 231
NL+ LDL TP+ FDN Y+ NL+Q GLL SDQ LFS G T IV+ +S N + F
Sbjct: 212 ATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTF 271
Query: 232 KSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
S+F +MIKM +I LTG G+IR CN VN
Sbjct: 272 FSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 164/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 33 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 152
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 212
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L +DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 213 NGNLSALVDMDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 272
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 273 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 163/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 32 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 151
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 152 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 211
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 212 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 271
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 272 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 163/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 33 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 152
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 212
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 213 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 272
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 273 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 163/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 32 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 151
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 152 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 211
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 212 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 271
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 272 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 163/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 32 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 151
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 152 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 211
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 212 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 271
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 272 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 162/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 33 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP L +L +
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDS 152
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 212
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 213 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 272
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 273 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 162/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 33 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP L +L +
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDS 152
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 212
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 213 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 272
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 273 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 163/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 32 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 151
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG H+ G+ QC F DR+YN ++ + T R CP
Sbjct: 152 FRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 211
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 212 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 271
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 272 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 162/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 32 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 151
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVAL G HT G+ QC F DR+YN ++ + T R CP
Sbjct: 152 FRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 211
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 212 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 271
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 272 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 223 bits (568), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 162/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHF DCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 33 IAASILRLHFEDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 152
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 212
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 213 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 272
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 273 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 162/274 (59%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++RLHFHDCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 33 IAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 152
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC DR+YN ++ + T R CP
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 212
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 213 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 272
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 273 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 220 bits (560), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 161/274 (58%), Gaps = 11/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+AAS++ LHF DCFV GCDA EK+A N SARGF VID +K+ +E C
Sbjct: 32 IAASILSLHFEDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCAD++ +AA+ + GGPSW V LGR+DS A LA NLP+ L +L +
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDS 151
Query: 120 FATKGLN-ARDLVALSGAHTIGQAQCAFFRDRIYN------NQSNIDAGFASTRRRQCPA 172
F GLN + DLVALSG HT G+ QC F DR+YN ++ + T R CP
Sbjct: 152 FRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL 211
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSG-GSTDYI--VDEYSKNPS 229
NG S L DL TP FDN Y+ NL ++KGL+ SDQ LFS +TD I V ++ +
Sbjct: 212 NGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQ 271
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
F + F AM +M +I+PLTGT GQIR C +VN
Sbjct: 272 TFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 159/274 (58%), Gaps = 13/274 (4%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+A LIR+HFHDCFV+GCDA EK+A+PN S RGFEVI + KS +E C
Sbjct: 32 IAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAAC 91
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P VSCADI+A AARD++ G ++ V GR+D T + S A +PS +LI++
Sbjct: 92 PQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINS 151
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQS------NIDAGFASTRRRQCPAN 173
FA K L A ++V LSGAH+IG A C+ F +R+YN S + +A+ R CPAN
Sbjct: 152 FANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPAN 211
Query: 174 GGDSNLSP----LDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPS 229
+ +P LD++TP+ DN Y+ + GLL SDQ L + + V + N +
Sbjct: 212 --STRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLT 269
Query: 230 KFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263
+ S FA AM+KM I LTGT G+IR C++VN
Sbjct: 270 AWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 157/268 (58%), Gaps = 6/268 (2%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFK-SARGFEVIDSVKSQLERV 59
+AA L+RLHFHDCFVQGCDA E+ A PN F+ ++ ++ +LER
Sbjct: 39 LAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERE 98
Query: 60 CPG-VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTT--ASRSLAENLPSFTDGLDKL 116
C G VVSC+DI+A+AARD+ GGP + V LGR+DS + +++ + +LP + + L
Sbjct: 99 CRGAVVSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSL 158
Query: 117 ISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNN-QSNIDAGFASTRRRQCPANGG 175
++ GL+A DLV +SG HTIG A C+ F DR++ I F S +R CPA G
Sbjct: 159 LALLGRLGLDATDLVTISGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGT 218
Query: 176 DSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDF 235
D + LD+ TPN FDN Y+ +L+ ++GL SDQ LF+ T IV+ ++++ F F
Sbjct: 219 DRR-TVLDVRTPNVFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQF 277
Query: 236 AAAMIKMADISPLTGTAGQIRRVCNIVN 263
++ KM + T G++RR C++ N
Sbjct: 278 GVSIGKMGQMRVRTSDQGEVRRNCSVRN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 42/203 (20%)
Query: 48 VIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLP 107
+++ +K Q +VS AD +A A GGP GR+D LP
Sbjct: 79 LLEPIKEQFP-----IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPE--GRLP 131
Query: 108 SFTDGLDKLISTFA-TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTR 166
T G D L F GL+ +D+VALSG HTIG A + +S + + S
Sbjct: 132 DATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAA---------HKERSGFEGPWTS-- 180
Query: 167 RRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVD 222
P FDN+YF L+ +K GL L SD+ L + +V+
Sbjct: 181 -------------------NPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVE 221
Query: 223 EYSKNPSKFKSDFAAAMIKMADI 245
+Y+ + F +D+A A +K++++
Sbjct: 222 KYAADEDVFFADYAEAHLKLSEL 244
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 180
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 181 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
Query: 238 AMIKMADI 245
A K++++
Sbjct: 237 AHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 180
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 181 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
Query: 238 AMIKMADI 245
A K++++
Sbjct: 237 AHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 180
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 181 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
Query: 238 AMIKMADI 245
A K++++
Sbjct: 237 AHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 146
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + +S + + S
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA---------HKERSGFEGPWTS----------------- 180
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 181 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
Query: 238 AMIKMADI 245
A K++++
Sbjct: 237 AHQKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 64 VSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAEN-LPSF--TDGLDKLISTF 120
V+ AD+ +A+ A GGP +K GR D T + E LP L F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 121 ATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLS 180
GLN +++VALSGAHT+G+++ DR + + + P G + +
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRP----DRSGWGKPE------TKYTKDGPGAPGGQSWT 196
Query: 181 PLDLVTPNSFDNNYFKNLIQKKG----LLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFA 236
L FDN+YFK++ +++ +L +D LF S ++Y+ +P F D+A
Sbjct: 197 AQWL----KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYA 252
Query: 237 AAMIKMADISPLTGTA 252
A K++++ G A
Sbjct: 253 EAHAKLSNLGAKFGPA 268
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 63 VVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFA- 121
++S AD +A A GGP GR+D LP T G D L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE--GRLPDATKGSDHLRDVFGK 158
Query: 122 TKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSP 181
GL +D+VALSG HTIG A + S + + S
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA---------HKEASGFEGPWTS----------------- 192
Query: 182 LDLVTPNSFDNNYFKNLI--QKKGL--LASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
P FDN+YF L+ +K+GL L SD+ L S +VD+Y+ + F +D+A
Sbjct: 193 ----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 238 AMIKMADI 245
A K++++
Sbjct: 249 AHQKLSEL 256
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 18/248 (7%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+ SLIRL +H+ C + L + +G ++ L++
Sbjct: 25 LGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECL--YAGNKGLDIPRKALETLKKKY 82
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P + S AD+ +AA A +GGP+ GR D+ S + LP + +
Sbjct: 83 PQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREV 141
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAF--FRDRIYNNQSNIDAGFASTRRRQCPANGGDS 177
F G N ++ VAL GAHT G+ F + ++++ D F +
Sbjct: 142 FRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQL----------- 190
Query: 178 NLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
L ++ P K +L SD L S V+ Y+K+ +F DFA
Sbjct: 191 -LDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFAN 249
Query: 238 AMIKMADI 245
A K+ ++
Sbjct: 250 AFKKLTEL 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 18/248 (7%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+ SLIRL +H+ C + L + +G ++ L++
Sbjct: 26 LGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECL--YAGNKGLDIPRKALETLKKKY 83
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P + S AD+ +AA A +GGP+ GR D+ S + LP + +
Sbjct: 84 PQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREV 142
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAF--FRDRIYNNQSNIDAGFASTRRRQCPANGGDS 177
F G N ++ VAL GAHT G+ F + ++++ D F +
Sbjct: 143 FRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQL----------- 191
Query: 178 NLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
L ++ P K +L SD L S V+ Y+K+ +F DFA
Sbjct: 192 -LDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFAN 250
Query: 238 AMIKMADI 245
A K+ ++
Sbjct: 251 AFKKLTEL 258
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 18/248 (7%)
Query: 1 MAASLIRLHFHDCFVQGCDAXXXXXXXXXXXXEKNALPNFKSARGFEVIDSVKSQLERVC 60
+ SLIRL +H+ C + L + +G ++ L++
Sbjct: 26 LGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECL--YAGNKGLDIPRKALETLKKKY 83
Query: 61 PGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLIST 119
P + S AD+ +AA A +GGP+ GR D+ S + LP + +
Sbjct: 84 PQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREV 142
Query: 120 FATKGLNARDLVALSGAHTIGQAQCAF--FRDRIYNNQSNIDAGFASTRRRQCPANGGDS 177
F G N ++ VAL GAHT G+ F + ++++ D F +
Sbjct: 143 FRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQL----------- 191
Query: 178 NLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAA 237
L ++ P K +L SD L S V+ Y+K+ +F DFA
Sbjct: 192 -LDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFAN 250
Query: 238 AMIKMADI 245
A K+ ++
Sbjct: 251 AFKKLTEL 258
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAHT+G+ ++G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK-------------NSGYEG 189
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
AN PN FDN+++ NL+ + +L
Sbjct: 190 P----WTAN-------------PNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAHT+G+ ++G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK-------------NSGYE- 188
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
P D T N FDN+++ NL+ + +L
Sbjct: 189 ---------------GPWD-ATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VALSGAHT+G+ ++G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLK-------------NSGY-- 187
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLA-----SDQVLFSGG---- 215
+ P + N FDN+++ NL+ + L ++Q G
Sbjct: 188 ----EGPWTANN-----------NVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQL 232
Query: 216 STDY----------IVDEYSKNPSKFKSDFAAAMIKMAD 244
TDY IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 82/219 (37%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAHT+G+ ++G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK-------------NSGY-- 187
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
+ P + N FDN+++ NL+ + +L
Sbjct: 188 ----EGPWTANN-----------NVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAHT+G+ ++G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK-------------NSGY-- 187
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLA-----SDQVLFSGG---- 215
+ P + N FDN+++ NL+ + L ++Q G
Sbjct: 188 ----EGPWTANN-----------NVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQL 232
Query: 216 STDY----------IVDEYSKNPSKFKSDFAAAMIKMAD 244
TDY IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 20/202 (9%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+ S + + +
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGA 193
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG--LLASDQVLFSGGSTDYIVD 222
C N NL D + NN + K G +L +D L IV
Sbjct: 194 A--NNCFTNEFYLNLLNEDWKLEKNDANN--EQWDSKSGYMMLPTDYSLIQDPKYLSIVK 249
Query: 223 EYSKNPSKFKSDFAAAMIKMAD 244
EY+ + KF DF+ A K+ +
Sbjct: 250 EYANDQDKFFKDFSKAFEKLLE 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 81 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 135
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+ +S + F +
Sbjct: 136 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL---------KRSGYEGPFGA 186
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
N F N ++ NL+ + +L
Sbjct: 187 AN---------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 225
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 226 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 264
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-------------------- 184
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
+R G +N N F N ++ NL+ + +L
Sbjct: 185 -KRSGYEGPWGAAN---------NVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMML 234
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-------------------- 182
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
+R G +N N F N ++ NL+ + +L
Sbjct: 183 -KRSGYEGPWGAAN---------NVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMML 232
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-------------------- 184
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
+R G +N N F N ++ NL+ + +L
Sbjct: 185 -KRSGYEGPWGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+
Sbjct: 140 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-------------------- 179
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
+R G +N N F N ++ NL+ + +L
Sbjct: 180 -KRSGYEGPWGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTXY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+ ++G+
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 189
Query: 165 TRRRQCPANGGDSNLSPLDLVTPN-SFDNNYFKN--LIQKKG--LLASDQVLFSGGSTDY 219
AN +N L+L+ N + N N K G +L +D L
Sbjct: 190 P---WGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS 246
Query: 220 IVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 87 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 141
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 142 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 201
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 202 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 245
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 246 --------IVKEYANDQDKFFKDFSKAFEKLLE 270
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 87 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 141
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP D + + F +N R++VAL GAH +G+ +S + F +
Sbjct: 142 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK---------RSGYEGPFGA 192
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
N F N ++ NL+ + +L
Sbjct: 193 AN---------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 231
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + +F DF+ A K+ +
Sbjct: 232 PTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLE 270
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP D + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 56/219 (25%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK----------------------- 182
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
T + GG +N N F N ++ NL+ + +L
Sbjct: 183 THLKNSGYEGGGAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 233
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 234 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 272
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 56/219 (25%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK----------------------- 177
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
T + GG +N N F N ++ NL+ + +L
Sbjct: 178 THLKNSGYEGGGAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 228
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 229 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 267
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 56/219 (25%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK----------------------- 176
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
T + GG +N N F N ++ NL+ + +L
Sbjct: 177 THLKNSGYEGGGAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 227
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 228 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 266
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 20/202 (9%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ S + + +
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGA 193
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG--LLASDQVLFSGGSTDYIVD 222
N G NL D + NN + K G +L +D L IV
Sbjct: 194 A--NNVFTNEGYLNLLNEDWKLEKNDANN--EQWDSKSGYMMLPTDYSLIQDPKYLSIVK 249
Query: 223 EYSKNPSKFKSDFAAAMIKMAD 244
EY+ + KF DF+ A K+ +
Sbjct: 250 EYANDQDKFFKDFSKAFEKLLE 271
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 191
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
GG +N N F N ++ NL+ + +L
Sbjct: 192 P--------GGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 189
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
GG +N N F N ++ NL+ + +L
Sbjct: 190 P--------GGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 187
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
GG +N N F N ++ NL+ + +L
Sbjct: 188 P--------GGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 230
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 231 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 269
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 189
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
GG +N N F N ++ NL+ + +L
Sbjct: 190 P--------GGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQ-----------CA--FFRDRI 151
LP + + F +N R++VAL GAH +G+ CA F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 186
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
GG +N N F N ++ NL+ + +L
Sbjct: 187 P--------GGAAN---------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 191
Query: 165 TRRRQCPANGGDSNLSPLDLVTPN-SFDNNYFKN--LIQKKG--LLASDQVLFSGGSTDY 219
Q AN +N L+L+ + + N N K G +L +D L
Sbjct: 192 P---QGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS 248
Query: 220 IVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 54/219 (24%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGY-- 184
Query: 165 TRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG-------------------LL 205
+ P + N F N Y+ NL+ + +L
Sbjct: 185 ----EGPWGAAN-----------NVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 206 ASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
+D L IV EY+ + KF DF+ A K+ +
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNED-----WKLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 205
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P ++ +LIQ L+
Sbjct: 206 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTAY------SLIQDPKYLS----- 249
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 250 --------IVKEYANDQDKFFKDFSKAFEKLLE 274
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P ++ +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTNY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P ++ +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTNY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFAS 164
LP + + F +N R++VAL GAH +G+ ++G+
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK-------------NSGYEG 186
Query: 165 TRRRQCPANGGDSNLSPLDLVTPN-SFDNNYFKN--LIQKKG--LLASDQVLFSGGSTDY 219
Q AN +N L+L+ + + N N K G +L +D L
Sbjct: 187 P---QGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS 243
Query: 220 IVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ + F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNED-----WKLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 205
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 206 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTEY------SLIQDPKYLS----- 249
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 250 --------IVKEYANDQDKFFKDFSKAFEKLLE 274
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 75/213 (35%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + DS + L T S LIQ L+
Sbjct: 200 YLNLLNED---WKLEKNDANNEQWDSKSGYMHLPTDYS--------LIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 205
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 206 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 249
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 250 --------IVKEYANDQDKFFKDFSKAFEKLLE 274
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 202
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 203 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 246
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 247 --------IVKEYANDQDKFFKDFSKAFEKLLE 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNED-----WKLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNED-----WKLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GAH +G+ F +
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEF 204
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 205 YLNLLNEDW-----KLEKNDANNEQWDSKSGYIMLPTDY------SLIQDPKYLS----- 248
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 249 --------IVKEYANDQDKFFKDFSKAFEKLLE 273
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 32/208 (15%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA--------FFRDRIYNNQS 156
LP + + F +N R++VAL GAH +G+ + ++ N+
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEK 199
Query: 157 NIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGS 216
++ + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS---------- 243
Query: 217 TDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 ---IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 80/226 (35%), Gaps = 54/226 (23%)
Query: 39 NFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTT 97
NF + G + I V +Q V +S D + A A S GG LGR D+
Sbjct: 74 NFPANAGIDEI--VSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVA 131
Query: 98 ASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSN 157
AS +P D +D +++ G + ++V L +H+I A
Sbjct: 132 ASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAAD-------------K 176
Query: 158 IDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYF--------------------KN 197
+D T P D TP FD+ +F ++
Sbjct: 177 VDPSIPGT---------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 198 LIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA 243
+Q + L SD +L T + N K ++ FAA M KMA
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSKMA 266
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 320 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 320 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 226 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 285
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 286 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 345
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 346 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 396
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 320 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 320 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 320 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ S L TP + +N+F+NL
Sbjct: 320 DAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 80/226 (35%), Gaps = 54/226 (23%)
Query: 39 NFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTT 97
NF + G + I V +Q V +S D + A A S GG LGR D+
Sbjct: 74 NFPANAGIDEI--VSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVA 131
Query: 98 ASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSN 157
AS +P D +D +++ G + ++V+L +H+I A
Sbjct: 132 ASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIAAAD-------------K 176
Query: 158 IDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYF--------------------KN 197
+D T P D TP FD+ +F ++
Sbjct: 177 VDPSIPGT---------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 198 LIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA 243
+Q + L SD +L T N K ++ FAA M KMA
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GA +G+ F +
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEF 200
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 201 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 244
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 245 --------IVKEYANDQDKFFKDFSKAFEKLLE 269
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GA +G+ F +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEF 199
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 200 YLNLLNED-----WKLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 243
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 244 --------IVKEYANDQDKFFKDFSKAFEKLLE 268
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 42/213 (19%)
Query: 45 GFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRKDSTTASRSLAE 104
GF+ ++ + + +S D+ ++ A + GP + GR D+ +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 105 NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCA-------------FFRDRI 151
LP + + F +N R++VAL GA +G+ F +
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEF 200
Query: 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVL 211
Y N N D + + AN + ++ P + +LIQ L+
Sbjct: 201 YLNLLNEDW-----KLEKNDANNEQWDSKSGYMMLPTDY------SLIQDPKYLS----- 244
Query: 212 FSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244
IV EY+ + KF DF+ A K+ +
Sbjct: 245 --------IVKEYANDQDKFFKDFSKAFEKLLE 269
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 79/226 (34%), Gaps = 54/226 (23%)
Query: 39 NFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTT 97
NF + G + I V +Q V +S D + A A S GG LGR D+
Sbjct: 74 NFPANAGIDEI--VSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVA 131
Query: 98 ASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSN 157
AS +P D +D +++ G + ++V L +H+I A
Sbjct: 132 ASPD--HLVPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIAAAD-------------K 176
Query: 158 IDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYF--------------------KN 197
+D T P D TP FD+ +F ++
Sbjct: 177 VDPSIPGT---------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 198 LIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA 243
+Q + L SD +L T N K ++ FAA M KMA
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ + L TP + +N+F+NL
Sbjct: 320 DAITTGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 80/226 (35%), Gaps = 54/226 (23%)
Query: 39 NFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTT 97
NF + G + I V +Q V +S D + A A S GG LGR D+
Sbjct: 74 NFPANAGIDEI--VSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVA 131
Query: 98 ASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSN 157
AS +P D +D +++ G + ++V L +H+I A +
Sbjct: 132 ASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------------AK 176
Query: 158 IDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYF--------------------KN 197
+D T P D TP FD+ +F ++
Sbjct: 177 VDPSIPGT---------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 198 LIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA 243
+Q + L SD +L T N K ++ FAA M KMA
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 42/171 (24%)
Query: 119 TFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRI--YNNQSNIDA---GFASTRRRQCPA 172
TFA +N + VAL +G HT G+ A + + I+A G+ S R A
Sbjct: 260 TFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGA 319
Query: 173 NGGDSNLSPLDLVTPNSFDNNYFKNLI--------------------------------- 199
+ + L TP + +N+F+NL
Sbjct: 320 DAITTGLEVTWTTTPTQWSHNFFENLFGYEWELTKSPAGAHQWVAKGADAVIPDAFDPSK 379
Query: 200 -QKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA--DISP 247
+ +L +D L + + I + +NP +F FA A K+ D+ P
Sbjct: 380 KHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGP 430
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 79/226 (34%), Gaps = 54/226 (23%)
Query: 39 NFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTT 97
NF + G + I V +Q V +S D + A A S GG LGR D+
Sbjct: 74 NFPANAGIDEI--VSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVA 131
Query: 98 ASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSN 157
AS +P D +D +++ G + ++V L +H+I A
Sbjct: 132 ASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIAAAD-------------K 176
Query: 158 IDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYF--------------------KN 197
+D T P D TP FD+ +F ++
Sbjct: 177 VDPSIPGT---------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 198 LIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA 243
+Q + L SD +L T N K ++ FAA M KMA
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 79/226 (34%), Gaps = 54/226 (23%)
Query: 39 NFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTT 97
NF + G + I V +Q V +S D + A A S GG LGR D+
Sbjct: 74 NFPANAGIDEI--VSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVA 131
Query: 98 ASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSN 157
AS +P D +D +++ G + ++V L +H+I A
Sbjct: 132 ASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAAD-------------K 176
Query: 158 IDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYF--------------------KN 197
+D T P D TP FD+ +F ++
Sbjct: 177 VDPSIPGT---------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 198 LIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMA 243
+Q + L SD +L T N K ++ FAA M KMA
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMA 266
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 43/176 (24%)
Query: 64 VSCADIVAVA-ARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFAT 122
VS D V A A A+ GGP GR S + S +P TD DK+++ A
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGR--SNISQPSPDGLVPDPTDSADKILARMAD 161
Query: 123 KGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPL 182
G + ++V L +H+I Q +D A SP
Sbjct: 162 IGFSPTEVVHLLASHSIAA-------------QYEVDTDVAG---------------SPF 193
Query: 183 DLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFK--SDFA 236
D TP+ FD +F + LL Q SG + + S P +F+ SDFA
Sbjct: 194 D-STPSVFDTQFF-----VESLLHGTQFTGSGQGGEVM----SPIPGEFRLQSDFA 239
>pdb|4EUF|A Chain A, Crystal Structure Of Clostridium Acetobutulicum
Trans-2-Enoyl-Coa Reductase In Complex With Nad
Length = 418
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 186 TPNSFDNNYFKNLIQKKGLLASDQV--LFSGGSTD----YIVDEYSK 226
T ++N +FK +KKGL+A + + FS + D YI DE+ K
Sbjct: 105 TAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETKDKVIKYIKDEFGK 151
>pdb|4EUE|A Chain A, Crystal Structure Of Clostridium Acetobutulicum
Trans-2-Enoyl-Coa Reductase In Complex With Nadh
pdb|4EUH|A Chain A, Crystal Structure Of Clostridium Acetobutulicum
Trans-2-Enoyl-Coa Reductase Apo Form
Length = 418
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 186 TPNSFDNNYFKNLIQKKGLLASDQV--LFSGGSTD----YIVDEYSK 226
T ++N +FK +KKGL+A + + FS + D YI DE+ K
Sbjct: 105 TAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETKDKVIKYIKDEFGK 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,152,117
Number of Sequences: 62578
Number of extensions: 274859
Number of successful extensions: 776
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 171
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)