Query 024722
Match_columns 263
No_of_seqs 147 out of 1300
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 7.4E-93 1.6E-97 644.8 20.1 258 1-263 55-324 (324)
2 cd00693 secretory_peroxidase H 100.0 4.1E-88 8.8E-93 612.7 20.4 260 1-262 32-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 3E-68 6.5E-73 477.6 18.1 214 1-260 30-257 (289)
4 PF00141 peroxidase: Peroxidas 100.0 3E-68 6.6E-73 468.0 9.6 212 1-227 15-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 1.3E-63 2.7E-68 443.2 16.9 211 1-248 29-251 (253)
6 cd00692 ligninase Ligninase an 100.0 4.1E-63 9E-68 451.7 17.7 216 2-263 38-287 (328)
7 PLN02364 L-ascorbate peroxidas 100.0 5.3E-62 1.1E-66 431.3 16.5 204 1-248 32-248 (250)
8 PLN02879 L-ascorbate peroxidas 100.0 6.5E-62 1.4E-66 430.0 16.5 203 2-248 34-248 (251)
9 cd00314 plant_peroxidase_like 100.0 7.1E-58 1.5E-62 408.2 15.4 208 1-244 17-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.4E-57 3E-62 421.6 16.0 241 2-253 70-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 2.9E-54 6.2E-59 422.3 16.2 237 2-249 80-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.1E-51 2.3E-56 402.2 16.0 238 2-250 82-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3E-49 6.4E-54 349.0 14.1 205 1-244 41-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 3.3E-41 7.2E-46 301.2 15.4 207 2-246 30-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.2E-35 2.7E-40 291.4 15.0 204 2-247 448-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.9E-35 6.3E-40 287.3 16.1 206 2-246 455-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 8.7E-35 1.9E-39 272.6 12.8 236 2-246 95-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 1.5E-13 3.2E-18 130.3 10.4 202 3-246 466-725 (730)
19 PTZ00411 transaldolase-like pr 87.0 3.9 8.4E-05 38.2 8.6 72 80-168 179-264 (333)
20 PRK12346 transaldolase A; Prov 85.6 4 8.6E-05 37.8 7.9 90 63-169 149-254 (316)
21 PRK12309 transaldolase/EF-hand 84.1 8.7 0.00019 36.7 9.7 88 64-168 155-258 (391)
22 TIGR00874 talAB transaldolase. 81.3 11 0.00023 35.1 8.8 49 80-128 167-219 (317)
23 PRK05269 transaldolase B; Prov 80.0 8.4 0.00018 35.7 7.8 49 80-128 169-221 (318)
24 cd00957 Transaldolase_TalAB Tr 79.1 9.2 0.0002 35.4 7.7 67 64-130 149-221 (313)
25 PF11895 DUF3415: Domain of un 65.6 5.3 0.00011 29.4 2.2 18 230-247 2-19 (80)
26 KOG0400 40S ribosomal protein 33.7 20 0.00044 28.9 1.0 34 111-144 31-65 (151)
27 cd00439 Transaldolase Transald 29.7 46 0.001 29.7 2.7 65 64-128 140-210 (252)
28 PF06511 IpaD: Invasion plasmi 28.4 52 0.0011 30.8 2.8 60 188-256 127-187 (337)
29 PRK01362 putative translaldola 28.3 53 0.0012 28.6 2.8 43 81-132 121-163 (214)
30 PRK05264 transcriptional repre 26.5 49 0.0011 25.0 1.8 45 210-259 35-81 (105)
31 cd00490 Met_repressor_MetJ Met 26.2 50 0.0011 24.8 1.8 45 210-259 34-80 (103)
32 PLN02161 beta-amylase 23.5 1.2E+02 0.0027 30.0 4.5 35 220-258 234-273 (531)
33 TIGR02553 SipD_IpaD_SspD type 23.3 1.1E+02 0.0024 28.3 3.9 35 217-256 125-160 (308)
34 PF11020 DUF2610: Domain of un 22.2 1.3E+02 0.0029 22.1 3.4 31 47-77 49-79 (82)
35 PF08782 c-SKI_SMAD_bind: c-SK 22.1 21 0.00046 27.2 -0.8 23 9-40 4-26 (96)
36 PF00043 GST_C: Glutathione S- 21.7 1.5E+02 0.0032 21.0 3.7 22 60-81 51-72 (95)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=7.4e-93 Score=644.85 Aligned_cols=258 Identities=49% Similarity=0.862 Sum_probs=243.1
Q ss_pred CchhhHHHhhhccCCCCCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHhHHHHHhh
Q 024722 1 MAASLIRLHFHDCFVQGCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFA 80 (263)
Q Consensus 1 ~a~~~lRl~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiialaa~~av~~ 80 (263)
++|++|||+||||||+||||||||+++. .|+++++|. +++||++|+.||+++|++||++|||||||++|+|+||++
T Consensus 55 ~aa~llRL~FHDCfv~GCDaSvLl~~~~---~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~ 130 (324)
T PLN03030 55 IAPGLLRMHFHDCFVRGCDASILIDGSN---TEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVL 130 (324)
T ss_pred cchhhhhhhhhhheecCCceEEeeCCCc---ccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccc
Confidence 5899999999999999999999998643 699999998 899999999999999999999999999999999999999
Q ss_pred hCCCCeeeeCCCCCCCCccccccCCCCCCCCCHHHHHHHHHhcCCCccchhhhcccccccccccccccccccc-------
Q 024722 81 VGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYN------- 153 (263)
Q Consensus 81 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl~~------- 153 (263)
+|||.|+|++||||+.+|...++.+||.|+.+++++++.|+++||+.+|||+|+||||||++||.+|.+||||
T Consensus 131 ~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~ 210 (324)
T PLN03030 131 TNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNG 210 (324)
T ss_pred cCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCC
Confidence 9999999999999999987655558999999999999999999999999999999999999999999999995
Q ss_pred -CCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhcCCcccccccccCcchHHHHHHhccCc----
Q 024722 154 -NQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNP---- 228 (263)
Q Consensus 154 -dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~~A~~~---- 228 (263)
|| +|||.|+..|++.||..+.....+++|+.||.+|||+||++|++++|+|.|||+|++|++|+++|++||.|+
T Consensus 211 ~Dp-~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~ 289 (324)
T PLN03030 211 ADP-SIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAG 289 (324)
T ss_pred CCC-chhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccch
Confidence 77 999999999999999633333467899999999999999999999999999999999999999999999885
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 024722 229 SKFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263 (263)
Q Consensus 229 ~~F~~~Fa~am~Km~~lgvltG~~GeiR~~C~~~n 263 (263)
+.|+++|++||+|||+|+||||++|||||+|+++|
T Consensus 290 ~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 290 LNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred hhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 49999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.1e-88 Score=612.73 Aligned_cols=260 Identities=56% Similarity=0.946 Sum_probs=247.0
Q ss_pred CchhhHHHhhhccCCCCCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHhHHHHHhh
Q 024722 1 MAASLIRLHFHDCFVQGCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVAARDASFA 80 (263)
Q Consensus 1 ~a~~~lRl~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiialaa~~av~~ 80 (263)
+||++|||+|||||++||||||||+++.++.+|+++++|. +++||++|+.||+++|+.||++|||||||+||+|+||+.
T Consensus 32 ~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~ 110 (298)
T cd00693 32 LAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVL 110 (298)
T ss_pred cCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceec
Confidence 5899999999999999999999999887778999999999 789999999999999999999999999999999999999
Q ss_pred hCCCCeeeeCCCCCCCCccccccCCCCCCCCCHHHHHHHHHhcCCCccchhhhcccccccccccccccccccc-------
Q 024722 81 VGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYN------- 153 (263)
Q Consensus 81 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl~~------- 153 (263)
+|||.|+|++||+|+..+....+..||.|+.+++++++.|+++||+++|||+|+||||||++||.+|.+|+|+
T Consensus 111 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~ 190 (298)
T cd00693 111 AGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDP 190 (298)
T ss_pred cCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCC
Confidence 9999999999999998776543338999999999999999999999999999999999999999999999984
Q ss_pred CCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhcCCcccccccccCcchHHHHHHhccCcchHHH
Q 024722 154 NQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKS 233 (263)
Q Consensus 154 dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~~A~~~~~F~~ 233 (263)
|| +|++.|+..|++.||........+++|+.||.+|||+||+++++++|+|.||++|+.|++|+++|++||.||+.|++
T Consensus 191 dp-~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~ 269 (298)
T cd00693 191 DP-TLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFR 269 (298)
T ss_pred CC-CccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHHHHHH
Confidence 78 99999999999999975545567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCcccccCccC
Q 024722 234 DFAAAMIKMADISPLTGTAGQIRRVCNIV 262 (263)
Q Consensus 234 ~Fa~am~Km~~lgvltG~~GeiR~~C~~~ 262 (263)
+|+.||+||++|+|+||.+|||||+|+++
T Consensus 270 ~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 270 DFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred HHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3e-68 Score=477.60 Aligned_cols=214 Identities=29% Similarity=0.463 Sum_probs=195.8
Q ss_pred CchhhHHHhhhccC-------CCCCCccccccCCCCChhhhccCCCCCCc-chhHHHHHHHHHhhhhCCCCCcHHHHHHH
Q 024722 1 MAASLIRLHFHDCF-------VQGCDASILLDDSSSIDSEKNALPNFKSA-RGFEVIDSVKSQLERVCPGVVSCADIVAV 72 (263)
Q Consensus 1 ~a~~~lRl~FHDc~-------~~GcDgSill~~~~~~~~E~~~~~N~~~~-~g~~~i~~ik~~l~~~c~~~VS~ADiial 72 (263)
++|.+|||+||||+ ++||||||++. +|+++++|. ++ +|+++|+.||+++ ++|||||||+|
T Consensus 30 ~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~~-----~~VScADilal 97 (289)
T PLN02608 30 CAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAKH-----PKITYADLYQL 97 (289)
T ss_pred cHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHHHHc-----CCcCHHHHHHH
Confidence 57999999999999 89999999973 599999999 55 7999999999997 38999999999
Q ss_pred hHHHHHhhhCCCCeeeeCCCCCCCCccccccC-CCCCCCCCHHHHHHHHHhcCCCccchhhhcccccccccccccccccc
Q 024722 73 AARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRI 151 (263)
Q Consensus 73 aa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl 151 (263)
|+|+||+.+|||.|+|++||+|+.+++ ++ +||+|+.+++++++.|+++|||++|||+|+||||||++||. |+
T Consensus 98 AardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~----r~ 170 (289)
T PLN02608 98 AGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPE----RS 170 (289)
T ss_pred HHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccccc----CC
Confidence 999999999999999999999999875 44 79999999999999999999999999999999999999994 43
Q ss_pred -ccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhh--cCC--cccccccccCcchHHHHHHhcc
Q 024722 152 -YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQK--KGL--LASDQVLFSGGSTDYIVDEYSK 226 (263)
Q Consensus 152 -~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~--~gl--l~SD~~L~~d~~t~~~v~~~A~ 226 (263)
|.. +++ .||.+|||+||++++++ +|+ |+||++|+.|++|+.+|+.||.
T Consensus 171 g~~g--------------------------~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~ 223 (289)
T PLN02608 171 GFDG--------------------------PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAK 223 (289)
T ss_pred CCCC--------------------------CCC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhh
Confidence 111 112 69999999999999998 788 7999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCCCCcccccCc
Q 024722 227 NPSKFKSDFAAAMIKMADISPLTGTAGQIRRVCN 260 (263)
Q Consensus 227 ~~~~F~~~Fa~am~Km~~lgvltG~~GeiR~~C~ 260 (263)
||+.|+++|++||+||++|+|+||++||+.+.-+
T Consensus 224 ~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 224 DEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 9999999999999999999999999999987543
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=3e-68 Score=467.96 Aligned_cols=212 Identities=56% Similarity=0.952 Sum_probs=189.8
Q ss_pred CchhhHHHhhhccCC-CCCCccccccCCCCChhhhccCCCCCCcc-hhHHHHHHHHHhhhhCCCCCcHHHHHHHhHHHHH
Q 024722 1 MAASLIRLHFHDCFV-QGCDASILLDDSSSIDSEKNALPNFKSAR-GFEVIDSVKSQLERVCPGVVSCADIVAVAARDAS 78 (263)
Q Consensus 1 ~a~~~lRl~FHDc~~-~GcDgSill~~~~~~~~E~~~~~N~~~~~-g~~~i~~ik~~l~~~c~~~VS~ADiialaa~~av 78 (263)
++|+||||+|||||+ +|||||||+ +..|+++++|. +++ ++++|+.||++++++||++|||||||++|+++||
T Consensus 15 ~~~~~lRl~FHDc~~~~GcDgSil~-----~~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av 88 (230)
T PF00141_consen 15 LAPGLLRLAFHDCFVYGGCDGSILL-----FSAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAV 88 (230)
T ss_dssp SHHHHHHHHHHHHTTHTSSSSGGGG-----STTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHccccccccccccceec-----ccccccccccc-CcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhcc
Confidence 589999999999999 999999998 34799999999 565 9999999999999999999999999999999999
Q ss_pred hhhCCCCeeeeCCCCCCCCccccccCCCCCCCCCHHHHHHHHHhcCCCccchhhhcccccccccccccccccccc--CCC
Q 024722 79 FAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYN--NQS 156 (263)
Q Consensus 79 ~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl~~--dp~ 156 (263)
+.+|||.|+|++||+|+.+++..++..||.|+.+++++++.|+++|||++|||+|+||||||++||.+|. |+|. ||
T Consensus 89 ~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~~~dp- 166 (230)
T PF00141_consen 89 ELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYFPPDP- 166 (230)
T ss_dssp HHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSCSSGT-
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceecccc-cccccccc-
Confidence 9999999999999999999986543359999999999999999999999999999999999999999999 9995 66
Q ss_pred CCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhcCCcccccccccCcchHHHHHHhccC
Q 024722 157 NIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKN 227 (263)
Q Consensus 157 ~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~~A~~ 227 (263)
.|++.|+.. .| ..+++. .+++| ||.+|||+||+++++++|+|.||++|++|++|+.+|++||+|
T Consensus 167 ~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 167 TMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp TSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred cccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 899999877 89 333333 67888 999999999999999999999999999999999999999976
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.3e-63 Score=443.22 Aligned_cols=211 Identities=30% Similarity=0.447 Sum_probs=187.7
Q ss_pred CchhhHHHhhhccCCCCCCccccccC---CCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHhHHHH
Q 024722 1 MAASLIRLHFHDCFVQGCDASILLDD---SSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVAARDA 77 (263)
Q Consensus 1 ~a~~~lRl~FHDc~~~GcDgSill~~---~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiialaa~~a 77 (263)
++|.+|||+|||||+ ||+|+++++ +..+.+|+++++|.++.+|+++|+.||+++ | +|||||||++|+++|
T Consensus 29 ~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAar~A 101 (253)
T cd00691 29 CAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAGVVA 101 (253)
T ss_pred cHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHH
Confidence 578999999999994 777776643 333467999999994449999999999987 3 899999999999999
Q ss_pred HhhhCCCCeeeeCCCCCCCCccccccC-CCCCCCCCHHHHHHHHHhcCCCccchhhhccccccccccccccccccccCCC
Q 024722 78 SFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYNNQS 156 (263)
Q Consensus 78 v~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl~~dp~ 156 (263)
|+.+|||.|+|++||+|+.++....++ +||.|+.++++++++|+++||+++|||+|+||||||++||..+ . |.
T Consensus 102 v~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~~--~-~~--- 175 (253)
T cd00691 102 IEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKERS--G-YD--- 175 (253)
T ss_pred HHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeecccccCC--C-CC---
Confidence 999999999999999999999876677 8999999999999999999999999999999999999999421 0 00
Q ss_pred CCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhcC--------CcccccccccCcchHHHHHHhccCc
Q 024722 157 NIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG--------LLASDQVLFSGGSTDYIVDEYSKNP 228 (263)
Q Consensus 157 ~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~g--------ll~SD~~L~~d~~t~~~v~~~A~~~ 228 (263)
+ . +..||.+|||+||++|+.++| +|.||++|+.|++|+.+|+.||+|+
T Consensus 176 ------------------g--~----~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~ 231 (253)
T cd00691 176 ------------------G--P----WTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQ 231 (253)
T ss_pred ------------------C--C----CCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCH
Confidence 0 1 125999999999999999999 9999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCC
Q 024722 229 SKFKSDFAAAMIKMADISPL 248 (263)
Q Consensus 229 ~~F~~~Fa~am~Km~~lgvl 248 (263)
++|+++|++||+||++++|.
T Consensus 232 ~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 232 DAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999986
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.1e-63 Score=451.73 Aligned_cols=216 Identities=30% Similarity=0.434 Sum_probs=193.2
Q ss_pred chhhHHHhhhccCC------------CCCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHH
Q 024722 2 AASLIRLHFHDCFV------------QGCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADI 69 (263)
Q Consensus 2 a~~~lRl~FHDc~~------------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADi 69 (263)
|+.+|||+||||++ +|||||||++.+ .|+++++|. +++ ++|+.||..+|+.| ||||||
T Consensus 38 a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~vvd~lk~~~e~~c---VScADi 107 (328)
T cd00692 38 AHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--EIVEALRPFHQKHN---VSMADF 107 (328)
T ss_pred HHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--HHHHHHHHHHHhcC---cCHHHH
Confidence 68899999999996 799999999753 599999998 554 89999999999998 999999
Q ss_pred HHHhHHHHHhh-hCCCCeeeeCCCCCCCCccccccC-CCCCCCCCHHHHHHHHHhcCCCccchhhhcccccccccccccc
Q 024722 70 VAVAARDASFA-VGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFF 147 (263)
Q Consensus 70 ialaa~~av~~-~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~ 147 (263)
|+||+++||+. +|||.|+|++||+|+..+. ++ +||.|+.+++++++.|++|||+++|||+|+||||||++|.
T Consensus 108 ialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~--- 181 (328)
T cd00692 108 IQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQDF--- 181 (328)
T ss_pred HHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCC---
Confidence 99999999995 6999999999999999875 45 8999999999999999999999999999999999999982
Q ss_pred ccccccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHH-hhcC-------------------Cccc
Q 024722 148 RDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLI-QKKG-------------------LLAS 207 (263)
Q Consensus 148 ~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~-~~~g-------------------ll~S 207 (263)
.|| +++ ..++| +||.+|||+||++++ ++++ +|+|
T Consensus 182 -----~Dp-s~~-------------------g~p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~S 235 (328)
T cd00692 182 -----VDP-SIA-------------------GTPFD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQS 235 (328)
T ss_pred -----CCC-CCC-------------------CCCCC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccc
Confidence 144 332 15678 699999999999987 4555 4999
Q ss_pred ccccccCcchHHHHHHhccCcchHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 024722 208 DQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMADISPLTGTAGQIRRVCNIVN 263 (263)
Q Consensus 208 D~~L~~d~~t~~~v~~~A~~~~~F~~~Fa~am~Km~~lgvltG~~GeiR~~C~~~n 263 (263)
|++|+.|++|+.+|++||+||++|+++|++||+||++|||. .....+|+.|+
T Consensus 236 D~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 236 DFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred hHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccC
Confidence 99999999999999999999999999999999999999986 34788999885
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=5.3e-62 Score=431.32 Aligned_cols=204 Identities=33% Similarity=0.535 Sum_probs=182.1
Q ss_pred CchhhHHHhhh-----ccCCC--CCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHh
Q 024722 1 MAASLIRLHFH-----DCFVQ--GCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA 73 (263)
Q Consensus 1 ~a~~~lRl~FH-----Dc~~~--GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiiala 73 (263)
+||.||||+|| ||+++ ||||||.. .+|+++++|.++.+|+++|+.||+++ ++|||||||+||
T Consensus 32 ~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~~~~~i~~ik~~~-----~~VScADilalA 100 (250)
T PLN02364 32 CAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHIALRLLDPIREQF-----PTISFADFHQLA 100 (250)
T ss_pred cHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHHHHHHHHHHHHHc-----CCcCHHHHHHHH
Confidence 58999999999 77765 99999943 46999999995458999999999998 389999999999
Q ss_pred HHHHHhhhCCCCeeeeCCCCCCCCccccccC-CCCCCCCCHHHHHHHHHh-cCCCccchhhhcccccccccccccccccc
Q 024722 74 ARDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLISTFAT-KGLNARDLVALSGAHTIGQAQCAFFRDRI 151 (263)
Q Consensus 74 a~~av~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~-~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl 151 (263)
+|+||+.+|||.|+|++||+|+.++. ++ .||.|+.+++++++.|++ +|||++|||+|+||||||++|| .|+
T Consensus 101 ardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~ 173 (250)
T PLN02364 101 GVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHK----DRS 173 (250)
T ss_pred HHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccC----CCC
Confidence 99999999999999999999999875 35 799999999999999997 6999999999999999999999 332
Q ss_pred ccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhh--cCCcc--cccccccCcchHHHHHHhccC
Q 024722 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQK--KGLLA--SDQVLFSGGSTDYIVDEYSKN 227 (263)
Q Consensus 152 ~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~--~gll~--SD~~L~~d~~t~~~v~~~A~~ 227 (263)
. . .+.+ + .||.+|||+||++|+.+ +|+|. ||++|+.|++|+.+|+.||.|
T Consensus 174 ~-----~-----------------~g~~---~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~ 227 (250)
T PLN02364 174 G-----F-----------------EGAW---T-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAAD 227 (250)
T ss_pred C-----C-----------------CCCC---C-CCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhC
Confidence 1 0 0011 2 69999999999999998 89865 999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhcCCCC
Q 024722 228 PSKFKSDFAAAMIKMADISPL 248 (263)
Q Consensus 228 ~~~F~~~Fa~am~Km~~lgvl 248 (263)
++.|+++|++||+||++|++-
T Consensus 228 ~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 228 EDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999973
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=6.5e-62 Score=430.02 Aligned_cols=203 Identities=30% Similarity=0.448 Sum_probs=183.0
Q ss_pred chhhHHHhhhccC-------CCCCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHhH
Q 024722 2 AASLIRLHFHDCF-------VQGCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVAA 74 (263)
Q Consensus 2 a~~~lRl~FHDc~-------~~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiialaa 74 (263)
+|.+|||+||||+ +|||||||+. ..|+++++|.++..++++|+.||+++ ++|||||||+||+
T Consensus 34 ~p~~vRla~Hdagt~~~~~~~GG~~Gsirf------~~E~~~~~N~gL~~~~~~i~~iK~~~-----~~VScADilalAa 102 (251)
T PLN02879 34 APIVLRLAWHSAGTFDVKTKTGGPFGTIRH------PQELAHDANNGLDIAVRLLDPIKELF-----PILSYADFYQLAG 102 (251)
T ss_pred hhHhHHHHHhhhccccCCCCCCCCCeeecC------hhhccCCCcCChHHHHHHHHHHHHHc-----CCcCHHHHHHHHH
Confidence 6899999999997 4899999975 35999999995545999999999998 3899999999999
Q ss_pred HHHHhhhCCCCeeeeCCCCCCCCccccccC-CCCCCCCCHHHHHHHHHhcCCCccchhhhcccccccccccccccccccc
Q 024722 75 RDASFAVGGPSWTVKLGRKDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNARDLVALSGAHTIGQAQCAFFRDRIYN 153 (263)
Q Consensus 75 ~~av~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~hc~~~~~Rl~~ 153 (263)
++||+.+|||.|+|++||+|+..++ ++ +||.|+.+++++++.|++|||+++|||+|+||||||++||. |+ +
T Consensus 103 ~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~----r~-g 174 (251)
T PLN02879 103 VVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKE----RS-G 174 (251)
T ss_pred HHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccc----cc-c
Confidence 9999999999999999999999874 45 89999999999999999999999999999999999999994 31 0
Q ss_pred CCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhh--cCC--cccccccccCcchHHHHHHhccCcc
Q 024722 154 NQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQK--KGL--LASDQVLFSGGSTDYIVDEYSKNPS 229 (263)
Q Consensus 154 dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~--~gl--l~SD~~L~~d~~t~~~v~~~A~~~~ 229 (263)
..+. +| .||.+|||+||++|+.+ +|+ |+||++|+.|++|+.+|++||+||+
T Consensus 175 ---------------------~~g~---~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~ 229 (251)
T PLN02879 175 ---------------------FEGA---WT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADED 229 (251)
T ss_pred ---------------------CCCC---CC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHH
Confidence 0111 33 69999999999999998 888 6899999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCC
Q 024722 230 KFKSDFAAAMIKMADISPL 248 (263)
Q Consensus 230 ~F~~~Fa~am~Km~~lgvl 248 (263)
.|+++|++||+||++|||-
T Consensus 230 ~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 230 AFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 9999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=7.1e-58 Score=408.21 Aligned_cols=208 Identities=38% Similarity=0.528 Sum_probs=190.1
Q ss_pred CchhhHHHhhhccCCC--------CCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHH
Q 024722 1 MAASLIRLHFHDCFVQ--------GCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAV 72 (263)
Q Consensus 1 ~a~~~lRl~FHDc~~~--------GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiial 72 (263)
++|.+|||+||||++. ||||||++++ |+++++|.++.+++++|+.||.+++. |++|||||||++
T Consensus 17 ~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlial 88 (255)
T cd00314 17 LAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYDG--GNPVSRADLIAL 88 (255)
T ss_pred hHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHH
Confidence 4789999999999986 9999999863 99999999667999999999999998 889999999999
Q ss_pred hHHHHHhhh--CCCCeeeeCCCCCCCCcc--ccccC-CCCCCCCCHHHHHHHHHhcCCCccchhhhc-ccccc-cccccc
Q 024722 73 AARDASFAV--GGPSWTVKLGRKDSTTAS--RSLAE-NLPSFTDGLDKLISTFATKGLNARDLVALS-GAHTI-GQAQCA 145 (263)
Q Consensus 73 aa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti-G~~hc~ 145 (263)
|+++||+.+ |||.|+|++||+|+..+. ...|. .+|.|..+++++++.|+++||+++|||||+ ||||| |++||.
T Consensus 89 Aa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~ 168 (255)
T cd00314 89 AGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGD 168 (255)
T ss_pred HHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCC
Confidence 999999999 999999999999999764 33455 788888999999999999999999999999 99999 999998
Q ss_pred ccccccccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhc----------------CCccccc
Q 024722 146 FFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKK----------------GLLASDQ 209 (263)
Q Consensus 146 ~~~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~----------------gll~SD~ 209 (263)
.+..|+ | .+++.||.+|||+||++++.++ ++|+||+
T Consensus 169 ~~~~~~------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~ 220 (255)
T cd00314 169 LLNYEG------------------S----------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDY 220 (255)
T ss_pred CCCccc------------------C----------CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhH
Confidence 776552 1 2344799999999999999988 8999999
Q ss_pred ccccCcchHHHHHHhccCcchHHHHHHHHHHHhhc
Q 024722 210 VLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMAD 244 (263)
Q Consensus 210 ~L~~d~~t~~~v~~~A~~~~~F~~~Fa~am~Km~~ 244 (263)
.|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 221 ~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 221 ALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999974
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.4e-57 Score=421.57 Aligned_cols=241 Identities=22% Similarity=0.286 Sum_probs=212.8
Q ss_pred chhhHHHhhhccCC-------CCCC-ccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHh
Q 024722 2 AASLIRLHFHDCFV-------QGCD-ASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA 73 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcD-gSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiiala 73 (263)
+|.+|||+||++++ ||++ |+|.+ .+|++++.|.++.+++.+++.||+++. ..||+||+|+||
T Consensus 70 gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf------~pe~~~~~N~gL~~a~~~L~pik~k~~----~~iS~ADL~~La 139 (409)
T cd00649 70 GPLFIRMAWHSAGTYRIADGRGGAGTGQQRF------APLNSWPDNVNLDKARRLLWPIKQKYG----NKISWADLMILA 139 (409)
T ss_pred ccceeeeeccccccccCcCCCCCCCCCcccc------ccccCcHhhhhHHHHHHHHHHHHHHcC----CCccHHHHHHHH
Confidence 58899999999995 6886 67754 569999999977789999999999875 479999999999
Q ss_pred HHHHHhhhCCCCeeeeCCCCCCCCccc--------------------------------------cccCCCCCCCCCHHH
Q 024722 74 ARDASFAVGGPSWTVKLGRKDSTTASR--------------------------------------SLAENLPSFTDGLDK 115 (263)
Q Consensus 74 a~~av~~~GGP~~~v~~GR~D~~~s~~--------------------------------------~~~~~lP~p~~~~~~ 115 (263)
+.+|||.+|||.|+|.+||.|+..+.. ..+..||.|..++.+
T Consensus 140 G~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~ 219 (409)
T cd00649 140 GNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKD 219 (409)
T ss_pred HHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHH
Confidence 999999999999999999999975431 122268999999999
Q ss_pred HHHHHHhcCCCccchhhh-ccccccccccccccccccccCCCCCCHHHHHHhh--hcCCCCCCC-CCCCCCC---CCCCC
Q 024722 116 LISTFATKGLNARDLVAL-SGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRR--RQCPANGGD-SNLSPLD---LVTPN 188 (263)
Q Consensus 116 l~~~F~~~Gl~~~e~VaL-~GaHtiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~--~~Cp~~~~~-~~~~~~D---~~tp~ 188 (263)
|++.|.+||||++||||| +||||||++||..|.+|+.+|| .+++.|.+.|. +.||...+. .....+| +.||.
T Consensus 220 LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP-~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~ 298 (409)
T cd00649 220 IRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEP-EAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPT 298 (409)
T ss_pred HHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCC-CcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcc
Confidence 999999999999999999 5999999999999999999999 99999999885 899974333 2345677 47999
Q ss_pred ccChHHHHHHHh------------------------------------hcCCcccccccccCcchHHHHHHhccCcchHH
Q 024722 189 SFDNNYFKNLIQ------------------------------------KKGLLASDQVLFSGGSTDYIVDEYSKNPSKFK 232 (263)
Q Consensus 189 ~fDn~Yy~~l~~------------------------------------~~gll~SD~~L~~d~~t~~~v~~~A~~~~~F~ 232 (263)
+|||+||++|++ +.+||.||++|+.|++++.+|++||.|++.|+
T Consensus 299 ~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff 378 (409)
T cd00649 299 KWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFA 378 (409)
T ss_pred hhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHH
Confidence 999999999998 45899999999999999999999999999999
Q ss_pred HHHHHHHHHh--hcCCCCCCCCC
Q 024722 233 SDFAAAMIKM--ADISPLTGTAG 253 (263)
Q Consensus 233 ~~Fa~am~Km--~~lgvltG~~G 253 (263)
++|++||+|| +.||+++-.-|
T Consensus 379 ~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 379 DAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred HHHHHHHHHHccccCCchhhhcC
Confidence 9999999999 68999886555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.9e-54 Score=422.31 Aligned_cols=237 Identities=22% Similarity=0.251 Sum_probs=206.6
Q ss_pred chhhHHHhhhccCC-------CCCC-ccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHh
Q 024722 2 AASLIRLHFHDCFV-------QGCD-ASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA 73 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcD-gSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiiala 73 (263)
+|.+|||+||++.+ |||+ |+|. +.+|++|+.|.++.+++.+++.||++ ||+.|||||||+||
T Consensus 80 gp~~vRlAWHsAgTYr~~d~rGGa~gg~iR------f~P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLA 149 (716)
T TIGR00198 80 GGLFIRMAWHAAGTYRIADGRGGAATGNQR------FAPLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILA 149 (716)
T ss_pred ceeeeeeeccccccccCCCCCCCCCCCcee------cccccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHH
Confidence 57899999999986 5774 6664 55799999999777899999998875 77899999999999
Q ss_pred HHHHHhhhCCCCeeeeCCCCCCCCcc-------------------------------------ccccCCCCCCCCCHHHH
Q 024722 74 ARDASFAVGGPSWTVKLGRKDSTTAS-------------------------------------RSLAENLPSFTDGLDKL 116 (263)
Q Consensus 74 a~~av~~~GGP~~~v~~GR~D~~~s~-------------------------------------~~~~~~lP~p~~~~~~l 116 (263)
+++|||.+|||.|+|.+||+|+..+. ...++.+|.|..++.+|
T Consensus 150 G~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~L 229 (716)
T TIGR00198 150 GTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDI 229 (716)
T ss_pred HHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHH
Confidence 99999999999999999999995321 01222689999999999
Q ss_pred HHHHHhcCCCccchhhhc-cccccccccccccccccccCCCCCCHHHHHHhhhcCCCCCC---CCCCCCCC---CCCCCc
Q 024722 117 ISTFATKGLNARDLVALS-GAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGG---DSNLSPLD---LVTPNS 189 (263)
Q Consensus 117 ~~~F~~~Gl~~~e~VaL~-GaHtiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~---~~~~~~~D---~~tp~~ 189 (263)
++.|++||||++|||||+ ||||||++||.++.+|+..|| .++|.|++.|+..||...+ +.....+| +.||.+
T Consensus 230 rd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP-~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~ 308 (716)
T TIGR00198 230 RTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDP-EGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQ 308 (716)
T ss_pred HHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCC-CcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCc
Confidence 999999999999999996 999999999999999998899 9999999999999986322 22245666 579999
Q ss_pred cChHHHHHHHhh----------------------------------cCCcccccccccCcchHHHHHHhccCcchHHHHH
Q 024722 190 FDNNYFKNLIQK----------------------------------KGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDF 235 (263)
Q Consensus 190 fDn~Yy~~l~~~----------------------------------~gll~SD~~L~~d~~t~~~v~~~A~~~~~F~~~F 235 (263)
|||+||++|+.+ .++|.||++|..|++++.+|+.||+|++.|+++|
T Consensus 309 FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dF 388 (716)
T TIGR00198 309 WDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAF 388 (716)
T ss_pred cchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHH
Confidence 999999999975 6889999999999999999999999999999999
Q ss_pred HHHHHHhhc--CCCCC
Q 024722 236 AAAMIKMAD--ISPLT 249 (263)
Q Consensus 236 a~am~Km~~--lgvlt 249 (263)
++||+||++ ||++.
T Consensus 389 A~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 389 AKAWFKLTHRDMGPKS 404 (716)
T ss_pred HHHHHHHcccccCchh
Confidence 999999994 56544
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.1e-51 Score=402.19 Aligned_cols=238 Identities=21% Similarity=0.277 Sum_probs=207.2
Q ss_pred chhhHHHhhhccCC-------CCCC-ccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHh
Q 024722 2 AASLIRLHFHDCFV-------QGCD-ASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVA 73 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcD-gSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiiala 73 (263)
+|.+|||+||++.+ |||+ |+|. +.+|++|+.|.++.+++.+++.||+++. ..||+||+|+||
T Consensus 82 gp~~vRlAWH~AgTYr~~d~rGGangg~iR------f~pe~~w~~N~gL~ka~~~L~pik~ky~----~~iS~ADLi~La 151 (726)
T PRK15061 82 GPLFIRMAWHSAGTYRIGDGRGGAGGGQQR------FAPLNSWPDNVNLDKARRLLWPIKQKYG----NKISWADLMILA 151 (726)
T ss_pred cceeeeeeecccccccCcCCCCCCCCCccc------CcccccchhhhhHHHHHHHHHHHHHHhC----CCccHHHHHHHH
Confidence 58899999999995 6885 6664 5579999999977789999999999875 479999999999
Q ss_pred HHHHHhhhCCCCeeeeCCCCCCCCccc---------------------------------------cccCCCCCCCCCHH
Q 024722 74 ARDASFAVGGPSWTVKLGRKDSTTASR---------------------------------------SLAENLPSFTDGLD 114 (263)
Q Consensus 74 a~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------------------~~~~~lP~p~~~~~ 114 (263)
+.+|||.+|||.++|.+||.|...+.. ..++.+|.|..++.
T Consensus 152 G~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~ 231 (726)
T PRK15061 152 GNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAAR 231 (726)
T ss_pred HHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHH
Confidence 999999999999999999999865432 01114799999999
Q ss_pred HHHHHHHhcCCCccchhhhc-cccccccccccccccccccCCCCCCHHHHHHh--hhcCCCCCCC-CCCCCCC---CCCC
Q 024722 115 KLISTFATKGLNARDLVALS-GAHTIGQAQCAFFRDRIYNNQSNIDAGFASTR--RRQCPANGGD-SNLSPLD---LVTP 187 (263)
Q Consensus 115 ~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~hc~~~~~Rl~~dp~~~~~~~~~~L--~~~Cp~~~~~-~~~~~~D---~~tp 187 (263)
+|++.|.+||||++|||||+ ||||||++||..+.+|+..|| .+++.+.+.| ++.||.+.+. .....+| +.||
T Consensus 232 ~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP-~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tP 310 (726)
T PRK15061 232 DIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEP-EAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTP 310 (726)
T ss_pred HHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCC-CcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCc
Confidence 99999999999999999995 999999999999999998899 9999999987 5999974333 2244577 5799
Q ss_pred CccChHHHHHHHhh------------------------------------cCCcccccccccCcchHHHHHHhccCcchH
Q 024722 188 NSFDNNYFKNLIQK------------------------------------KGLLASDQVLFSGGSTDYIVDEYSKNPSKF 231 (263)
Q Consensus 188 ~~fDn~Yy~~l~~~------------------------------------~gll~SD~~L~~d~~t~~~v~~~A~~~~~F 231 (263)
.+|||+||++|+.+ .+||.||++|..|+.++.+|++||+|+++|
T Consensus 311 t~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F 390 (726)
T PRK15061 311 TQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEF 390 (726)
T ss_pred chhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHH
Confidence 99999999999985 489999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc--CCCCCC
Q 024722 232 KSDFAAAMIKMAD--ISPLTG 250 (263)
Q Consensus 232 ~~~Fa~am~Km~~--lgvltG 250 (263)
+++|++||.||++ +|+++-
T Consensus 391 ~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 391 ADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred HHHHHHHHHHHcccCCCchhh
Confidence 9999999999955 666543
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3e-49 Score=349.00 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=168.6
Q ss_pred CchhhHHHhhhccC-------CCCCCccccccCCCCChhhhc-cCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHH
Q 024722 1 MAASLIRLHFHDCF-------VQGCDASILLDDSSSIDSEKN-ALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAV 72 (263)
Q Consensus 1 ~a~~~lRl~FHDc~-------~~GcDgSill~~~~~~~~E~~-~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiial 72 (263)
+|++||||+||||+ ++||||||+++.. .+|+. .+.|. .+++|+.|+.+ +|||||||||
T Consensus 41 ~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~----------~VScADiial 106 (264)
T cd08201 41 AAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP----------RSSMADLIAM 106 (264)
T ss_pred HHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC----------ccCHHHHHHH
Confidence 58999999999999 8899999999642 36776 33343 66777766433 6999999999
Q ss_pred hHHHHHhhhCCCCeeeeCCCCCCCCccccccCCCCCCCCCHHHHHHHHHhcCCCccchhhhcc-cccccccccccccccc
Q 024722 73 AARDASFAVGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFATKGLNARDLVALSG-AHTIGQAQCAFFRDRI 151 (263)
Q Consensus 73 aa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G-aHtiG~~hc~~~~~Rl 151 (263)
|+++||+.+|||.|+|++||+|+..+... .||.|+.+++++++.|++|||+++|||+|+| |||||++||..|..+.
T Consensus 107 Aa~~AV~~~GGP~i~v~~GR~Da~~s~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~ 183 (264)
T cd08201 107 GVVTSVASCGGPVVPFRAGRIDATEAGQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIV 183 (264)
T ss_pred HHHHHHHHcCCCeecccccCCCccccccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhc
Confidence 99999999999999999999999987532 5999999999999999999999999999996 9999999999887653
Q ss_pred ccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhcC----------CcccccccccCcchHHHH
Q 024722 152 YNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKKG----------LLASDQVLFSGGSTDYIV 221 (263)
Q Consensus 152 ~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~g----------ll~SD~~L~~d~~t~~~v 221 (263)
- | .+ ..+...++| +||.+|||+||.+++++.. -+.||..++....-.. +
T Consensus 184 ~--~-----g~------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t-~ 242 (264)
T cd08201 184 P--P-----GS------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNVT-M 242 (264)
T ss_pred C--C-----cc------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccHH-H
Confidence 1 1 00 001235677 6999999999999998653 3679999998766544 5
Q ss_pred HHhccCcchHHHHHHHHHHHhhc
Q 024722 222 DEYSKNPSKFKSDFAAAMIKMAD 244 (263)
Q Consensus 222 ~~~A~~~~~F~~~Fa~am~Km~~ 244 (263)
+.+| +++.|.+.++..+.||.+
T Consensus 243 ~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 243 NELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHhc-ChHHHHHHHHHHHHHHhC
Confidence 6677 689999999999999964
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.3e-41 Score=301.21 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=169.6
Q ss_pred chhhHHHhhhccCC-------CCCCcc-ccccCCCCChhhhccCCCCC--CcchhHHHHHHHHHhhhh-CC-CCCcHHHH
Q 024722 2 AASLIRLHFHDCFV-------QGCDAS-ILLDDSSSIDSEKNALPNFK--SARGFEVIDSVKSQLERV-CP-GVVSCADI 69 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~~~g~~~i~~ik~~l~~~-c~-~~VS~ADi 69 (263)
++.||||+||++.+ ||++|+ |. +.+|++|+.|.+ +.+++.+++.||+++... -+ ..||+||+
T Consensus 30 ~~~lvrlAWhsAgTyr~sd~rGGaNGariR------l~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADL 103 (297)
T cd08200 30 VSELVSTAWASASTFRNSDKRGGANGARIR------LAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADL 103 (297)
T ss_pred HHHHHHHhhhccccccCCCCCCCCCccccc------CccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHH
Confidence 57899999999985 799999 54 457999999997 568899999999998632 12 26999999
Q ss_pred HHHhHHHHHhhhCC-----CCeeeeCCCCCCCCcccccc--C-CCCCCC------------CCHHHHHHHHHhcCCCccc
Q 024722 70 VAVAARDASFAVGG-----PSWTVKLGRKDSTTASRSLA--E-NLPSFT------------DGLDKLISTFATKGLNARD 129 (263)
Q Consensus 70 ialaa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~-~lP~p~------------~~~~~l~~~F~~~Gl~~~e 129 (263)
|+||+..|||.+|| |.++|.+||.|+..+..... + .+|.+. .+.+.|++.|.+||||++|
T Consensus 104 ivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~E 183 (297)
T cd08200 104 IVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPE 183 (297)
T ss_pred HHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHH
Confidence 99999999999999 99999999999987532111 1 234332 2457899999999999999
Q ss_pred hhhhcccc-ccccccccccccccccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhc------
Q 024722 130 LVALSGAH-TIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKK------ 202 (263)
Q Consensus 130 ~VaL~GaH-tiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~------ 202 (263)
||||+||| ++|+.|..+ ..+.|+ .+|.+|||.||++|+...
T Consensus 184 mvaL~Gg~r~lG~~~~~s----------------------------~~G~wT----~~p~~f~N~fF~nLLd~~~~W~~~ 231 (297)
T cd08200 184 MTVLVGGLRVLGANYGGS----------------------------KHGVFT----DRPGVLTNDFFVNLLDMSTEWKPA 231 (297)
T ss_pred HhheecchhhcccCCCCC----------------------------CCCCCc----CCCCccccHHHHHHhcccceeeec
Confidence 99999998 699877421 112344 589999999999999520
Q ss_pred --------------C-----CcccccccccCcchHHHHHHhccC--cchHHHHHHHHHHHhhcCC
Q 024722 203 --------------G-----LLASDQVLFSGGSTDYIVDEYSKN--PSKFKSDFAAAMIKMADIS 246 (263)
Q Consensus 203 --------------g-----ll~SD~~L~~d~~t~~~v~~~A~~--~~~F~~~Fa~am~Km~~lg 246 (263)
| .+++|.+|.+|++.+.+|+.||.| +++|++||++||.||+++.
T Consensus 232 ~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 232 DEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred CCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 1 268899999999999999999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.2e-35 Score=291.38 Aligned_cols=204 Identities=22% Similarity=0.298 Sum_probs=167.5
Q ss_pred chhhHHHhhhccCC-------CCCCcc-ccccCCCCChhhhccCCC--CCCcchhHHHHHHHHHhhhhCCCCCcHHHHHH
Q 024722 2 AASLIRLHFHDCFV-------QGCDAS-ILLDDSSSIDSEKNALPN--FKSARGFEVIDSVKSQLERVCPGVVSCADIVA 71 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiia 71 (263)
++.||||+||++.+ ||++|+ |.+ .+|++|+.| .++.+.+.+++.||+++... .||+||+|+
T Consensus 448 ~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~~---~vS~ADLiv 518 (716)
T TIGR00198 448 VSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPTRLAKVLAVLEKIQAEFAKG---PVSLADLIV 518 (716)
T ss_pred HHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHHHHHHHHHHHHHHHHHcCCC---cccHHHHHH
Confidence 57899999999985 799998 644 569999999 76668899999999998632 799999999
Q ss_pred HhHHHHHhhh---CCC--CeeeeCCCCCCCCccccccC-CCC---C------------CCCCHHHHHHHHHhcCCCccch
Q 024722 72 VAARDASFAV---GGP--SWTVKLGRKDSTTASRSLAE-NLP---S------------FTDGLDKLISTFATKGLNARDL 130 (263)
Q Consensus 72 laa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~-~lP---~------------p~~~~~~l~~~F~~~Gl~~~e~ 130 (263)
||+.+|||.+ ||| .++|.+||.|+..... +++ ..| . .....+.|++.|.+||||+.||
T Consensus 519 LaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~Em 597 (716)
T TIGR00198 519 LGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEM 597 (716)
T ss_pred HHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHH
Confidence 9999999998 898 5899999999987542 232 222 1 1234677999999999999999
Q ss_pred hhhccc-cccccccccccccccccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhc-------
Q 024722 131 VALSGA-HTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKK------- 202 (263)
Q Consensus 131 VaL~Ga-HtiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~------- 202 (263)
|||+|| |++|+.|..+ ..+.|+ .+|.+|||.||++|+...
T Consensus 598 vaL~Gg~r~lG~~~~~s----------------------------~~G~~T----~~p~~f~NdfF~~LLd~~~~w~~~~ 645 (716)
T TIGR00198 598 TVLIGGMRVLGANHGGS----------------------------KHGVFT----DRVGVLSNDFFVNLLDMAYEWRAAD 645 (716)
T ss_pred HheecchhhccccCCCC----------------------------CCCCCc----CCCCccccHHHHHHhcCCceeeecC
Confidence 999998 5999988421 112243 589999999999999621
Q ss_pred -------------C---C--cccccccccCcchHHHHHHhccCc--chHHHHHHHHHHHhhcCCC
Q 024722 203 -------------G---L--LASDQVLFSGGSTDYIVDEYSKNP--SKFKSDFAAAMIKMADISP 247 (263)
Q Consensus 203 -------------g---l--l~SD~~L~~d~~t~~~v~~~A~~~--~~F~~~Fa~am~Km~~lgv 247 (263)
| + .++|.+|.+|++.|.+|+.||+|+ ++|++||++||.|+++++-
T Consensus 646 ~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 646 NNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred CCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 1 2 378999999999999999999997 8999999999999999873
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.9e-35 Score=287.31 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=169.5
Q ss_pred chhhHHHhhhccCC-------CCCCcc-ccccCCCCChhhhccCCCC--CCcchhHHHHHHHHHhhhhCC--CCCcHHHH
Q 024722 2 AASLIRLHFHDCFV-------QGCDAS-ILLDDSSSIDSEKNALPNF--KSARGFEVIDSVKSQLERVCP--GVVSCADI 69 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N~--~~~~g~~~i~~ik~~l~~~c~--~~VS~ADi 69 (263)
.+.|||++||++.+ ||++|+ |.+ .+|++|+.|. ++.+.+++++.||++++..-. ..||+||+
T Consensus 455 ~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl------~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADL 528 (726)
T PRK15061 455 VSELVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADL 528 (726)
T ss_pred HHHHHHHHHhhcccccCCCCCCCCCccceec------ccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHH
Confidence 57899999999985 799998 655 4699999998 666889999999999964321 26999999
Q ss_pred HHHhHHHHHhhh---CC--CCeeeeCCCCCCCCccccccC----CCCCCC------------CCHHHHHHHHHhcCCCcc
Q 024722 70 VAVAARDASFAV---GG--PSWTVKLGRKDSTTASRSLAE----NLPSFT------------DGLDKLISTFATKGLNAR 128 (263)
Q Consensus 70 ialaa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~----~lP~p~------------~~~~~l~~~F~~~Gl~~~ 128 (263)
|+||+.+|||.+ || |.++|.+||.|+.... ++++ .+|... ...+.|++.|.+||||+.
T Consensus 529 ivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~ 607 (726)
T PRK15061 529 IVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAP 607 (726)
T ss_pred HHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChH
Confidence 999999999998 57 9999999999998753 2222 346432 235789999999999999
Q ss_pred chhhhcccc-ccccccccccccccccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhc-----
Q 024722 129 DLVALSGAH-TIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKK----- 202 (263)
Q Consensus 129 e~VaL~GaH-tiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~----- 202 (263)
|||||+||| ++|+.|..+ ..+.|+ ..|.+|||.||++|+...
T Consensus 608 EmvaL~Gg~r~Lg~~~~~S----------------------------~~G~~T----~~p~~fsNdfFvnLLdm~~~W~~ 655 (726)
T PRK15061 608 EMTVLVGGLRVLGANYGGS----------------------------KHGVFT----DRPGVLTNDFFVNLLDMGTEWKP 655 (726)
T ss_pred HHhheecchhhcccCCCCC----------------------------CCCCCc----CCCCccccHHHHHHhcCCceeee
Confidence 999999997 688887321 112233 489999999999999521
Q ss_pred ---------------C-----CcccccccccCcchHHHHHHhccC--cchHHHHHHHHHHHhhcCC
Q 024722 203 ---------------G-----LLASDQVLFSGGSTDYIVDEYSKN--PSKFKSDFAAAMIKMADIS 246 (263)
Q Consensus 203 ---------------g-----ll~SD~~L~~d~~t~~~v~~~A~~--~~~F~~~Fa~am~Km~~lg 246 (263)
| .+++|.+|.+|++.|.+|+.||+| +++|++||++||.|+++++
T Consensus 656 ~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 656 TDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred cCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 1 147899999999999999999998 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-35 Score=272.60 Aligned_cols=236 Identities=20% Similarity=0.263 Sum_probs=189.8
Q ss_pred chhhHHHhhhccCC-------CCCCccccccCCCCChhhhccCCCCCCcchhHHHHHHHHHhhhhCCCCCcHHHHHHHhH
Q 024722 2 AASLIRLHFHDCFV-------QGCDASILLDDSSSIDSEKNALPNFKSARGFEVIDSVKSQLERVCPGVVSCADIVAVAA 74 (263)
Q Consensus 2 a~~~lRl~FHDc~~-------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~i~~ik~~l~~~c~~~VS~ADiialaa 74 (263)
.|.+|||+||-+++ ||..+ +..+|.++.+||.|.++.++..+++.||+++. ..||+||+|+|++
T Consensus 95 GplfIRmAWHsAGTYRi~DGRGGa~~-----G~qRFaPlnSWPDN~nLDKarRLLWPIKkKYG----~kiSWaDL~iLaG 165 (730)
T COG0376 95 GPLFIRMAWHSAGTYRIGDGRGGAGG-----GQQRFAPLNSWPDNANLDKARRLLWPIKKKYG----RKISWADLIILAG 165 (730)
T ss_pred ccceeeeeecccCceecccCCCCCCC-----CceecccccCCCcccchHHHHHHhhhHhHhhc----ccccHhHhhhhhc
Confidence 47899999999986 33333 34578899999999988899999999999876 5899999999999
Q ss_pred HHHHhhhCCCCeeeeCCCCCCCCccc--------------------------------------cccCCCCCCCCCHHHH
Q 024722 75 RDASFAVGGPSWTVKLGRKDSTTASR--------------------------------------SLAENLPSFTDGLDKL 116 (263)
Q Consensus 75 ~~av~~~GGP~~~v~~GR~D~~~s~~--------------------------------------~~~~~lP~p~~~~~~l 116 (263)
.+|+|.+|++.+.|..||.|-..+.. ..++..|.|..+..++
T Consensus 166 nvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dI 245 (730)
T COG0376 166 NVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDI 245 (730)
T ss_pred hhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHH
Confidence 99999999999999999999887754 2333678888999999
Q ss_pred HHHHHhcCCCccchhhhc-cccccccccccccccccccCCCCCCHHHH-HHhhhcCCCCCCCCCC-CCCC---CCCCCcc
Q 024722 117 ISTFATKGLNARDLVALS-GAHTIGQAQCAFFRDRIYNNQSNIDAGFA-STRRRQCPANGGDSNL-SPLD---LVTPNSF 190 (263)
Q Consensus 117 ~~~F~~~Gl~~~e~VaL~-GaHtiG~~hc~~~~~Rl~~dp~~~~~~~~-~~L~~~Cp~~~~~~~~-~~~D---~~tp~~f 190 (263)
+..|++|+|+++|+|||+ ||||+|++|...-.+-+.++|+.-..... -.+.+.|..+.+..+. ..+. ..||++|
T Consensus 246 RetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w 325 (730)
T COG0376 246 RETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQW 325 (730)
T ss_pred HHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccccCCCCcchh
Confidence 999999999999999998 59999999987655555556632222111 1245555443332111 1111 1589999
Q ss_pred ChHHHHHHHhhc-----------------------------------CCcccccccccCcchHHHHHHhccCcchHHHHH
Q 024722 191 DNNYFKNLIQKK-----------------------------------GLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDF 235 (263)
Q Consensus 191 Dn~Yy~~l~~~~-----------------------------------gll~SD~~L~~d~~t~~~v~~~A~~~~~F~~~F 235 (263)
||+||.+|+... .||.+|.+|..||..+.|.++|.+|+++|.+.|
T Consensus 326 ~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~F 405 (730)
T COG0376 326 SNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAF 405 (730)
T ss_pred hhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHH
Confidence 999999999632 379999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 024722 236 AAAMIKMADIS 246 (263)
Q Consensus 236 a~am~Km~~lg 246 (263)
++||.||.+-.
T Consensus 406 ArAWfKLtHRD 416 (730)
T COG0376 406 ARAWFKLTHRD 416 (730)
T ss_pred HHHHHHHhhcc
Confidence 99999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.5e-13 Score=130.34 Aligned_cols=202 Identities=21% Similarity=0.295 Sum_probs=146.0
Q ss_pred hhhHHHhhhccCC-------CCCCccccccCCCCChhhhccCCCCC--CcchhHHHHHHHHHhhhhCCCCCcHHHHHHHh
Q 024722 3 ASLIRLHFHDCFV-------QGCDASILLDDSSSIDSEKNALPNFK--SARGFEVIDSVKSQLERVCPGVVSCADIVAVA 73 (263)
Q Consensus 3 ~~~lRl~FHDc~~-------~GcDgSill~~~~~~~~E~~~~~N~~--~~~g~~~i~~ik~~l~~~c~~~VS~ADiiala 73 (263)
..|+-.+|--+.+ ||.+|.-+ +-.+.++|..|.. +.+.+.+++.|++.++ ..||.||+|+|+
T Consensus 466 s~lVstAWaSAsTfRgsDkRGGaNGaRi-----rLaPqkdWevN~P~~l~kvl~~le~iq~~fn----kkvSlADlIVL~ 536 (730)
T COG0376 466 SQLVSTAWASASTFRGSDKRGGANGARI-----RLAPQKDWEVNQPAELAKVLAVLEKIQKEFN----KKVSLADLIVLG 536 (730)
T ss_pred HHHHHHHHHhhhhccCCcccCCcCcceE-----eecccccCCCCCHHHHHHHHHHHHHHHHHhc----CccchhHheeec
Confidence 4566677766653 67877653 1235799999963 2267888999998888 379999999999
Q ss_pred HHHHHhhh---CCCC--eeeeCCCCCCCCccccccC--C-C-CC------------CCCCHHHHHHHHHhcCCCccchhh
Q 024722 74 ARDASFAV---GGPS--WTVKLGRKDSTTASRSLAE--N-L-PS------------FTDGLDKLISTFATKGLNARDLVA 132 (263)
Q Consensus 74 a~~av~~~---GGP~--~~v~~GR~D~~~s~~~~~~--~-l-P~------------p~~~~~~l~~~F~~~Gl~~~e~Va 132 (263)
+..|||.+ +|-. ++|..||.|+..... +++ . | |- ...+..-|+++-+-++||.-||++
T Consensus 537 G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtV 615 (730)
T COG0376 537 GNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTV 615 (730)
T ss_pred chHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceE
Confidence 99999975 4544 678899999976532 222 1 1 11 123456688888899999999999
Q ss_pred hccccc-cccccccccccccccCCCCCCHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccChHHHHHHHhhc---------
Q 024722 133 LSGAHT-IGQAQCAFFRDRIYNNQSNIDAGFASTRRRQCPANGGDSNLSPLDLVTPNSFDNNYFKNLIQKK--------- 202 (263)
Q Consensus 133 L~GaHt-iG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~fDn~Yy~~l~~~~--------- 202 (263)
|+||-. +|..+.. ....+.. ..|.++.|.||.||+.-.
T Consensus 616 LiGGlRvLg~n~g~------------------------------s~~GVfT--~~pg~LtndFFvnLlDM~~~W~~~~~~ 663 (730)
T COG0376 616 LIGGLRVLGANYGG------------------------------SKHGVFT--DRPGVLTNDFFVNLLDMGTEWKPTDDA 663 (730)
T ss_pred EEcceEeeccCCCC------------------------------Cccceec--cCcccccchhhhhhhhccceeeecccc
Confidence 999864 4443311 1111222 368888899999888621
Q ss_pred -----------C-----CcccccccccCcchHHHHHHhccC--cchHHHHHHHHHHHhhcCC
Q 024722 203 -----------G-----LLASDQVLFSGGSTDYIVDEYSKN--PSKFKSDFAAAMIKMADIS 246 (263)
Q Consensus 203 -----------g-----ll~SD~~L~~d~~t~~~v~~~A~~--~~~F~~~Fa~am~Km~~lg 246 (263)
| --..|..+-+++..|.+.+-||.+ +++|.+||+.||.|..++.
T Consensus 664 ~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 664 RGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred ccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 2 135788888999999999999875 7889999999999999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=86.95 E-value=3.9 Score=38.21 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=44.0
Q ss_pred hhCCCCeeeeCCCCCCCCccccccCCCCC-CC---CCHHHHHHHHHhcCCCc----------cchhhhcccccccccccc
Q 024722 80 AVGGPSWTVKLGRKDSTTASRSLAENLPS-FT---DGLDKLISTFATKGLNA----------RDLVALSGAHTIGQAQCA 145 (263)
Q Consensus 80 ~~GGP~~~v~~GR~D~~~s~~~~~~~lP~-p~---~~~~~l~~~F~~~Gl~~----------~e~VaL~GaHtiG~~hc~ 145 (263)
.+|...+..++||.+-+.-........+. .. ..+.++.++|++.|+.. +|+..|.|+|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l------ 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL------ 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE------
Confidence 35888899999999665321111111222 11 34677888999888754 455666666653
Q ss_pred ccccccccCCCCCCHHHHHHhhh
Q 024722 146 FFRDRIYNNQSNIDAGFASTRRR 168 (263)
Q Consensus 146 ~~~~Rl~~dp~~~~~~~~~~L~~ 168 (263)
++.|.....|..
T Consensus 253 -----------Ti~p~ll~~L~~ 264 (333)
T PTZ00411 253 -----------TISPKLLEELAN 264 (333)
T ss_pred -----------eCCHHHHHHHHh
Confidence 566777666654
No 20
>PRK12346 transaldolase A; Provisional
Probab=85.63 E-value=4 Score=37.84 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=52.9
Q ss_pred CCcHHHHHHHhHHHHHh--hhCCCCeeeeCCCCCCCCccccccCCCCCC----CCCHHHHHHHHHhcCCCc---------
Q 024722 63 VVSCADIVAVAARDASF--AVGGPSWTVKLGRKDSTTASRSLAENLPSF----TDGLDKLISTFATKGLNA--------- 127 (263)
Q Consensus 63 ~VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~~--------- 127 (263)
.|+|-=.+.+....|+. .+|...+..++||.|-+.........++.. -..+.++.++|++.|+..
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn 228 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRR 228 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 34444444454444433 468889999999998754321111122221 234777888998888754
Q ss_pred -cchhhhccccccccccccccccccccCCCCCCHHHHHHhhhc
Q 024722 128 -RDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRRQ 169 (263)
Q Consensus 128 -~e~VaL~GaHtiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~~ 169 (263)
+|+.+|.|+|.+ ++.|.....|...
T Consensus 229 ~~qi~alaG~d~l-----------------Ti~p~ll~~L~~~ 254 (316)
T PRK12346 229 TEQILALAGCDRL-----------------TISPNLLKELQES 254 (316)
T ss_pred HHHHHHHhCCCEE-----------------eCCHHHHHHHHhc
Confidence 455556665543 6677777776553
No 21
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=84.09 E-value=8.7 Score=36.68 Aligned_cols=88 Identities=14% Similarity=0.230 Sum_probs=51.0
Q ss_pred CcHHHHHHHhHHHHHh--hhCCCCeeeeCCCCCCCCccccccCCCCCCCC----CHHHHHHHHHhcCCCc----------
Q 024722 64 VSCADIVAVAARDASF--AVGGPSWTVKLGRKDSTTASRSLAENLPSFTD----GLDKLISTFATKGLNA---------- 127 (263)
Q Consensus 64 VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~----~~~~l~~~F~~~Gl~~---------- 127 (263)
|.|-=.+.+....|+. .+|...+..++||.|-+.-.....+.+|...+ .+.++.++|++.|+..
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~ 234 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNI 234 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCH
Confidence 3333333444444433 36888899999998875432211112443332 3777888998888754
Q ss_pred cchhhhccccccccccccccccccccCCCCCCHHHHHHhhh
Q 024722 128 RDLVALSGAHTIGQAQCAFFRDRIYNNQSNIDAGFASTRRR 168 (263)
Q Consensus 128 ~e~VaL~GaHtiG~~hc~~~~~Rl~~dp~~~~~~~~~~L~~ 168 (263)
.++..|.|+|.+ ++.|.....|..
T Consensus 235 ~~v~~laG~d~~-----------------Ti~p~ll~~L~~ 258 (391)
T PRK12309 235 GEIIELAGCDLL-----------------TISPKLLEQLRS 258 (391)
T ss_pred HHHHHHHCCCee-----------------eCCHHHHHHHHh
Confidence 344445554432 567777777655
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=81.32 E-value=11 Score=35.10 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=30.6
Q ss_pred hhCCCCeeeeCCCCCCCCccccccCCCCC----CCCCHHHHHHHHHhcCCCcc
Q 024722 80 AVGGPSWTVKLGRKDSTTASRSLAENLPS----FTDGLDKLISTFATKGLNAR 128 (263)
Q Consensus 80 ~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 128 (263)
.+|...+..++||.+-+.-........+. +-..+.++.++|++.|+..+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 46888899999999774322111001111 23457788889999998653
No 23
>PRK05269 transaldolase B; Provisional
Probab=79.99 E-value=8.4 Score=35.73 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=30.6
Q ss_pred hhCCCCeeeeCCCCCCCCccccccCCCC----CCCCCHHHHHHHHHhcCCCcc
Q 024722 80 AVGGPSWTVKLGRKDSTTASRSLAENLP----SFTDGLDKLISTFATKGLNAR 128 (263)
Q Consensus 80 ~~GGP~~~v~~GR~D~~~s~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~ 128 (263)
.+|...+..++||.|-..-...+....+ ++-..+.++.+.|++.|+..+
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 4588889999999986522111100111 122357888889999998665
No 24
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=79.13 E-value=9.2 Score=35.42 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=37.5
Q ss_pred CcHHHHHHHhHHHHHh--hhCCCCeeeeCCCCCCCCccccccCCCCC----CCCCHHHHHHHHHhcCCCccch
Q 024722 64 VSCADIVAVAARDASF--AVGGPSWTVKLGRKDSTTASRSLAENLPS----FTDGLDKLISTFATKGLNARDL 130 (263)
Q Consensus 64 VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~e~ 130 (263)
|+|-=.+.+....|+. .+|...+..++||.|-+.-........+. +-..+.++.+.|++.|+..+-|
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm 221 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM 221 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE
Confidence 4443334444444433 35888899999999865321111001111 1234778888999999865433
No 25
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=65.60 E-value=5.3 Score=29.43 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhhcCCC
Q 024722 230 KFKSDFAAAMIKMADISP 247 (263)
Q Consensus 230 ~F~~~Fa~am~Km~~lgv 247 (263)
+....|..+|.||+.||.
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356899999999999985
No 26
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=33.74 E-value=20 Score=28.94 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhcCCCccchhh-hccccccccccc
Q 024722 111 DGLDKLISTFATKGLNARDLVA-LSGAHTIGQAQC 144 (263)
Q Consensus 111 ~~~~~l~~~F~~~Gl~~~e~Va-L~GaHtiG~~hc 144 (263)
+++.+.+-.|+++||++.++=+ |=-+|-||+++-
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhhe
Confidence 4566677799999999998744 457999999873
No 27
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=29.70 E-value=46 Score=29.72 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=34.9
Q ss_pred CcHHHHHHHhHHHHHh--hhCCCCeeeeCCCCCCCCccccccCCC-CCCCCC---HHHHHHHHHhcCCCcc
Q 024722 64 VSCADIVAVAARDASF--AVGGPSWTVKLGRKDSTTASRSLAENL-PSFTDG---LDKLISTFATKGLNAR 128 (263)
Q Consensus 64 VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~l-P~p~~~---~~~l~~~F~~~Gl~~~ 128 (263)
|++-=.+.+....|+. .+|...+.+++||.|...-.......+ |..... +.++.+.|++.|...+
T Consensus 140 I~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tk 210 (252)
T cd00439 140 ISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQR 210 (252)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCe
Confidence 3333333444444433 357888999999999865422111111 111122 4467777877786554
No 28
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=28.36 E-value=52 Score=30.79 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=37.2
Q ss_pred CccChHHHHHHHhhcCCcccccccccCcchHHHHHHhccCcchHHHHHHHHHHHhhcCCCCCCCCC-ccc
Q 024722 188 NSFDNNYFKNLIQKKGLLASDQVLFSGGSTDYIVDEYSKNPSKFKSDFAAAMIKMADISPLTGTAG-QIR 256 (263)
Q Consensus 188 ~~fDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~v~~~A~~~~~F~~~Fa~am~Km~~lgvltG~~G-eiR 256 (263)
..-+..+|..|..--.-..+|.. .-+...|+.| +.|+++|...+.||+.. +..|.+| .|.
T Consensus 127 ~~S~~elw~~I~~~I~sIk~dYl----d~Ya~vv~kY----Tdyyq~fneilskms~~-I~aG~DGn~Vk 187 (337)
T PF06511_consen 127 GISYAELWAKIADLIKSIKDDYL----DVYADVVKKY----TDYYQDFNEILSKMSDW-IKAGKDGNNVK 187 (337)
T ss_dssp -EEHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHH----HHHHHHHHHHHHHHGGG-EEECSSCTEEE
T ss_pred CcchHHHHHHHHHHHHHHHhhHH----HHHHHHHHHH----HHHHHHHHHHHHHHHhh-hhcCCCCCeee
Confidence 34445555555443222222211 2355566776 56999999999999886 7789998 554
No 29
>PRK01362 putative translaldolase; Provisional
Probab=28.29 E-value=53 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=29.4
Q ss_pred hCCCCeeeeCCCCCCCCccccccCCCCCCCCCHHHHHHHHHhcCCCccchhh
Q 024722 81 VGGPSWTVKLGRKDSTTASRSLAENLPSFTDGLDKLISTFATKGLNARDLVA 132 (263)
Q Consensus 81 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~Va 132 (263)
+|.-++..++||.|-..- ++..-+.++.+.++..|++.+=|+|
T Consensus 121 aGa~yispyvgRi~d~g~---------dg~~~i~~~~~~~~~~~~~tkilaA 163 (214)
T PRK01362 121 AGATYVSPFVGRLDDIGT---------DGMELIEDIREIYDNYGFDTEIIAA 163 (214)
T ss_pred cCCcEEEeecchHhhcCC---------CHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 466678899999976421 1234467888888888877654443
No 30
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=26.48 E-value=49 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=33.4
Q ss_pred ccccCcchHHHHHHh--ccCcchHHHHHHHHHHHhhcCCCCCCCCCcccccC
Q 024722 210 VLFSGGSTDYIVDEY--SKNPSKFKSDFAAAMIKMADISPLTGTAGQIRRVC 259 (263)
Q Consensus 210 ~L~~d~~t~~~v~~~--A~~~~~F~~~Fa~am~Km~~lgvltG~~GeiR~~C 259 (263)
.+++|.+||+.|+.. |.|.+..-+.|-.||. |..--.+..+||.+
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T-----GQPLP~D~Dl~Kd~ 81 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDEDLRKER 81 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc-----CCCCCChhhhhhcC
Confidence 567899999999765 8899999999999985 22223455566654
No 31
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=26.15 E-value=50 Score=24.83 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=33.5
Q ss_pred ccccCcchHHHHHHh--ccCcchHHHHHHHHHHHhhcCCCCCCCCCcccccC
Q 024722 210 VLFSGGSTDYIVDEY--SKNPSKFKSDFAAAMIKMADISPLTGTAGQIRRVC 259 (263)
Q Consensus 210 ~L~~d~~t~~~v~~~--A~~~~~F~~~Fa~am~Km~~lgvltG~~GeiR~~C 259 (263)
.+++|.+||+.|+.. |.|.+..-+.|-.||. |..--.+..+||.+
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT-----GQPLP~D~Dl~K~~ 80 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDADLRKER 80 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc-----CCCCCChhhhhhcC
Confidence 567899999999765 8899999999999885 22223455666654
No 32
>PLN02161 beta-amylase
Probab=23.48 E-value=1.2e+02 Score=30.03 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred HHHHhccCcchHHHHHHHHHHHhh-----cCCCCCCCCCccccc
Q 024722 220 IVDEYSKNPSKFKSDFAAAMIKMA-----DISPLTGTAGQIRRV 258 (263)
Q Consensus 220 ~v~~~A~~~~~F~~~Fa~am~Km~-----~lgvltG~~GeiR~~ 258 (263)
-++.|. .|.+.|...|.-+. +|.|=-|..||.|--
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRYP 273 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRYP 273 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccCC
Confidence 456674 47777777777654 555556999999963
No 33
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=23.34 E-value=1.1e+02 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=27.6
Q ss_pred hHHHHHHhccCcchHHHHHHHHHHHhhcCCCCCCCCC-ccc
Q 024722 217 TDYIVDEYSKNPSKFKSDFAAAMIKMADISPLTGTAG-QIR 256 (263)
Q Consensus 217 t~~~v~~~A~~~~~F~~~Fa~am~Km~~lgvltG~~G-eiR 256 (263)
...+|+.| +.|+++|...|.||+. -+..|.+| .|.
T Consensus 125 Ya~lvk~Y----Td~yQ~fn~~lSkls~-~IsaG~DGn~Vk 160 (308)
T TIGR02553 125 YENVVEGY----TDFYQAFSDILSKMQD-WISPGKDGNNVK 160 (308)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhh-hcccCCCCCeee
Confidence 55667777 5699999999999976 47889999 553
No 34
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=22.23 E-value=1.3e+02 Score=22.13 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhCCCCCcHHHHHHHhHHHH
Q 024722 47 EVIDSVKSQLERVCPGVVSCADIVAVAARDA 77 (263)
Q Consensus 47 ~~i~~ik~~l~~~c~~~VS~ADiialaa~~a 77 (263)
++.+.+.+..+-+-.+.||.+|+.++|-..|
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4555555555444447999999999987655
No 35
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=22.07 E-value=21 Score=27.24 Aligned_cols=23 Identities=39% Similarity=0.901 Sum_probs=12.6
Q ss_pred hhhccCCCCCCccccccCCCCChhhhccCCCC
Q 024722 9 HFHDCFVQGCDASILLDDSSSIDSEKNALPNF 40 (263)
Q Consensus 9 ~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~ 40 (263)
.+|+|+ +||.|+.. +|+-..+|.
T Consensus 4 V~HeC~-g~c~G~f~--------P~lY~~~~a 26 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI--------PELYSSPNA 26 (96)
T ss_dssp EEE-ST-T-EEEEE---------GGG--STT-
T ss_pred eEEeec-CccceEec--------hhhcCCCCC
Confidence 479998 89999985 355555555
No 36
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=21.74 E-value=1.5e+02 Score=21.01 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=15.6
Q ss_pred CCCCCcHHHHHHHhHHHHHhhh
Q 024722 60 CPGVVSCADIVAVAARDASFAV 81 (263)
Q Consensus 60 c~~~VS~ADiialaa~~av~~~ 81 (263)
+...+|.||+..+....-+...
T Consensus 51 ~G~~~t~ADi~~~~~~~~~~~~ 72 (95)
T PF00043_consen 51 VGDKLTIADIALFPMLDWLERL 72 (95)
T ss_dssp SBSS-CHHHHHHHHHHHHHHHH
T ss_pred eccCCchhHHHHHHHHHHHHHh
Confidence 4468999999888887666543
Done!