Query 024723
Match_columns 263
No_of_seqs 123 out of 1129
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 5.4E-37 1.2E-41 275.8 21.9 212 36-252 234-449 (449)
2 PLN03074 auxin influx permease 100.0 2E-36 4.3E-41 280.4 22.3 248 2-263 197-462 (473)
3 PTZ00206 amino acid transporte 100.0 2.7E-36 5.9E-41 280.0 17.9 206 43-253 256-465 (467)
4 KOG1303 Amino acid transporter 100.0 6.6E-36 1.4E-40 272.0 18.9 245 1-254 188-436 (437)
5 PF01490 Aa_trans: Transmembra 100.0 1.4E-35 3.1E-40 270.7 -0.4 209 38-250 187-409 (409)
6 KOG1305 Amino acid transporter 100.0 1.5E-28 3.3E-33 222.7 19.3 245 2-255 155-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1E-30 2.2E-35 224.6 -1.0 215 41-262 300-524 (524)
8 COG0814 SdaC Amino acid permea 99.6 2.9E-14 6.2E-19 130.7 19.3 205 39-248 189-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.3 8.3E-10 1.8E-14 100.8 21.0 194 37-240 178-390 (394)
10 TIGR00837 araaP aromatic amino 99.2 4.5E-10 9.7E-15 102.1 17.6 171 40-220 175-359 (381)
11 PRK10483 tryptophan permease; 99.0 2.1E-08 4.5E-13 91.5 17.8 171 40-220 189-373 (414)
12 PRK15132 tyrosine transporter 98.9 4.7E-08 1E-12 89.3 15.2 190 44-243 182-390 (403)
13 PRK09664 tryptophan permease T 98.9 2.6E-07 5.7E-12 84.3 18.1 191 42-243 192-402 (415)
14 TIGR00814 stp serine transport 98.7 2.6E-07 5.7E-12 84.4 12.4 197 41-238 184-396 (397)
15 PRK13629 threonine/serine tran 98.7 6.5E-07 1.4E-11 82.1 14.7 202 43-245 209-439 (443)
16 PRK11021 putative transporter; 98.2 0.0016 3.5E-08 59.8 24.9 175 38-221 172-363 (410)
17 TIGR03813 put_Glu_GABA_T putat 98.1 0.0015 3.2E-08 61.3 22.6 162 51-219 202-384 (474)
18 PRK10746 putative transport pr 98.1 0.0021 4.5E-08 60.1 23.1 176 39-220 196-388 (461)
19 PRK10655 potE putrescine trans 98.0 0.0035 7.7E-08 58.0 23.8 58 42-104 188-245 (438)
20 PRK10644 arginine:agmatin anti 98.0 0.0025 5.4E-08 59.2 22.7 60 40-104 188-247 (445)
21 PRK11357 frlA putative fructos 98.0 0.001 2.2E-08 61.7 19.8 57 42-103 194-250 (445)
22 PF13520 AA_permease_2: Amino 98.0 0.0011 2.3E-08 61.0 18.7 172 40-221 185-376 (426)
23 TIGR03810 arg_ornith_anti argi 97.9 0.0043 9.3E-08 58.1 22.5 170 42-221 194-381 (468)
24 TIGR00906 2A0303 cationic amin 97.9 0.0037 8E-08 59.9 22.2 170 39-219 227-410 (557)
25 TIGR00909 2A0306 amino acid tr 97.9 0.0074 1.6E-07 55.6 22.4 170 39-219 191-375 (429)
26 TIGR00905 2A0302 transporter, 97.8 0.0057 1.2E-07 57.3 21.3 59 41-105 197-255 (473)
27 PRK10435 cadB lysine/cadaverin 97.8 0.0074 1.6E-07 55.9 21.9 63 39-106 183-245 (435)
28 PRK10197 gamma-aminobutyrate t 97.8 0.0075 1.6E-07 56.1 21.3 173 39-219 177-367 (446)
29 KOG1287 Amino acid transporter 97.8 0.0029 6.2E-08 58.7 17.4 178 38-225 199-391 (479)
30 PRK10249 phenylalanine transpo 97.7 0.016 3.4E-07 54.1 22.1 172 39-219 205-394 (458)
31 TIGR00910 2A0307_GadC glutamat 97.7 0.013 2.8E-07 55.5 21.4 51 45-100 196-246 (507)
32 PRK11387 S-methylmethionine tr 97.6 0.016 3.5E-07 54.3 20.8 173 40-220 203-392 (471)
33 PRK10836 lysine transporter; P 97.6 0.028 6.1E-07 52.9 22.3 58 41-103 203-260 (489)
34 COG0531 PotE Amino acid transp 97.6 0.038 8.1E-07 51.2 22.9 171 40-220 198-389 (466)
35 TIGR00911 2A0308 L-type amino 97.6 0.012 2.6E-07 55.6 19.8 60 40-104 232-291 (501)
36 PRK15049 L-asparagine permease 97.6 0.017 3.6E-07 54.7 20.4 174 39-220 216-406 (499)
37 TIGR00908 2A0305 ethanolamine 97.6 0.048 1E-06 50.6 23.0 58 39-101 187-244 (442)
38 PRK11049 D-alanine/D-serine/gl 97.5 0.03 6.5E-07 52.4 21.5 175 39-220 207-399 (469)
39 PRK10238 aromatic amino acid t 97.5 0.05 1.1E-06 50.8 22.5 173 39-220 196-386 (456)
40 TIGR01773 GABAperm gamma-amino 97.4 0.043 9.4E-07 51.0 20.9 60 39-103 197-256 (452)
41 PRK10580 proY putative proline 97.4 0.07 1.5E-06 49.8 21.4 59 39-102 195-253 (457)
42 TIGR00913 2A0310 amino acid pe 97.3 0.1 2.2E-06 48.9 22.5 56 42-102 196-251 (478)
43 TIGR00907 2A0304 amino acid pe 97.2 0.17 3.6E-06 47.6 22.5 60 44-108 218-277 (482)
44 PRK15238 inner membrane transp 97.0 0.35 7.5E-06 45.7 22.1 55 43-102 211-265 (496)
45 COG1113 AnsP Gamma-aminobutyra 96.8 0.038 8.3E-07 50.9 13.4 177 36-220 196-389 (462)
46 TIGR00930 2a30 K-Cl cotranspor 96.7 0.22 4.8E-06 50.8 19.0 54 44-102 281-334 (953)
47 KOG1286 Amino acid transporter 96.5 0.051 1.1E-06 51.9 12.3 176 38-220 227-423 (554)
48 TIGR00912 2A0309 spore germina 96.2 0.3 6.5E-06 43.9 15.8 164 41-219 176-353 (359)
49 TIGR03428 ureacarb_perm permea 96.1 1.2 2.6E-05 41.7 24.1 61 43-108 213-273 (475)
50 PF00324 AA_permease: Amino ac 95.7 0.017 3.7E-07 54.1 5.1 65 40-109 197-261 (478)
51 TIGR00800 ncs1 NCS1 nucleoside 92.8 7 0.00015 36.3 15.7 114 39-158 203-329 (442)
52 PF03845 Spore_permease: Spore 91.7 3.7 8.1E-05 36.2 11.9 116 38-159 170-295 (320)
53 PRK10484 putative transporter; 90.5 16 0.00036 34.7 18.4 34 74-109 271-307 (523)
54 COG0833 LysP Amino acid transp 89.8 19 0.00041 34.4 16.5 176 37-219 228-427 (541)
55 COG1457 CodB Purine-cytosine p 89.5 18 0.00039 33.8 18.6 165 38-216 188-358 (442)
56 COG1914 MntH Mn2+ and Fe2+ tra 89.4 13 0.00029 34.3 13.6 56 165-220 323-378 (416)
57 COG1953 FUI1 Cytosine/uracil/t 87.4 26 0.00057 33.1 15.1 143 60-210 258-407 (497)
58 PF00209 SNF: Sodium:neurotran 82.2 47 0.001 31.6 16.8 129 23-156 228-378 (523)
59 KOG1289 Amino acid transporter 81.9 50 0.0011 31.6 16.6 173 41-220 250-444 (550)
60 TIGR02121 Na_Pro_sym sodium/pr 80.5 52 0.0011 31.0 19.7 27 83-109 265-294 (487)
61 PRK15419 proline:sodium sympor 78.3 62 0.0013 30.6 20.1 16 94-109 283-298 (502)
62 PRK11375 allantoin permease; P 77.8 64 0.0014 30.5 15.6 157 42-210 226-393 (484)
63 PRK12488 acetate permease; Pro 76.1 76 0.0016 30.5 20.6 46 177-224 413-458 (549)
64 TIGR02119 panF sodium/pantothe 74.8 74 0.0016 29.7 21.1 30 74-105 263-292 (471)
65 TIGR02711 symport_actP cation/ 73.4 89 0.0019 30.0 21.0 44 177-224 413-458 (549)
66 TIGR03648 Na_symport_lg probab 71.2 1E+02 0.0022 29.6 20.8 43 179-224 426-468 (552)
67 TIGR02358 thia_cytX probable h 68.9 93 0.002 28.4 19.4 87 61-157 191-277 (386)
68 PF05805 L6_membrane: L6 membr 68.0 20 0.00043 29.5 6.2 65 190-254 43-117 (195)
69 COG0591 PutP Na+/proline sympo 67.3 1.2E+02 0.0025 28.8 16.2 57 48-109 240-299 (493)
70 COG0814 SdaC Amino acid permea 65.7 89 0.0019 28.9 10.9 52 169-220 324-376 (415)
71 KOG4812 Golgi-associated prote 59.5 18 0.00038 30.7 4.5 79 174-256 160-254 (262)
72 TIGR00813 sss transporter, SSS 55.3 1.7E+02 0.0036 26.7 17.6 33 74-108 230-265 (407)
73 PRK09442 panF sodium/panthothe 53.5 2E+02 0.0042 27.0 22.3 28 74-103 264-291 (483)
74 KOG2082 K+/Cl- cotransporter K 50.3 2.9E+02 0.0063 28.0 12.2 186 42-238 409-615 (1075)
75 PHA02680 ORF090 IMV phosphoryl 48.4 44 0.00096 23.6 4.3 58 47-111 15-73 (91)
76 PRK09395 actP acetate permease 45.1 2.9E+02 0.0062 26.5 18.4 43 178-224 416-460 (551)
77 TIGR00796 livcs branched-chain 43.0 2.6E+02 0.0057 25.5 17.1 136 60-214 198-344 (378)
78 PRK10263 DNA translocase FtsK; 41.5 4.9E+02 0.011 28.2 15.8 20 88-107 28-47 (1355)
79 PF02468 PsbN: Photosystem II 40.2 33 0.00071 20.9 2.3 26 84-109 4-29 (43)
80 CHL00020 psbN photosystem II p 39.3 29 0.00062 21.1 2.0 28 83-110 3-30 (43)
81 PF12794 MscS_TM: Mechanosensi 38.8 2.9E+02 0.0063 24.8 10.8 38 83-120 48-85 (340)
82 TIGR02230 ATPase_gene1 F0F1-AT 38.4 1.2E+02 0.0027 22.1 5.6 21 227-247 74-94 (100)
83 PRK13183 psbN photosystem II r 37.7 34 0.00074 21.1 2.1 28 83-110 6-33 (46)
84 PF01566 Nramp: Natural resist 37.6 3E+02 0.0065 24.6 11.2 36 123-158 252-287 (358)
85 PF05767 Pox_A14: Poxvirus vir 37.6 48 0.001 23.6 3.2 59 46-112 14-73 (92)
86 cd08765 Cyt_b561_CYBRD1 Verteb 35.9 1.4E+02 0.003 23.6 5.9 65 82-148 47-111 (153)
87 PF10716 NdhL: NADH dehydrogen 32.1 1.8E+02 0.0039 20.3 5.6 51 189-240 13-65 (81)
88 PHA02898 virion envelope prote 32.0 66 0.0014 22.8 3.1 62 46-115 14-76 (92)
89 COG4147 DhlC Predicted symport 30.8 4.8E+02 0.01 24.9 18.1 174 40-223 234-444 (529)
90 PF00689 Cation_ATPase_C: Cati 30.2 1E+02 0.0023 24.3 4.7 28 170-197 128-155 (182)
91 PF07954 DUF1689: Protein of u 29.9 1.6E+02 0.0035 23.2 5.4 63 196-258 34-98 (152)
92 PF00474 SSF: Sodium:solute sy 29.6 4.2E+02 0.0092 23.9 9.3 44 178-223 352-395 (406)
93 PHA03048 IMV membrane protein; 29.5 1.1E+02 0.0023 21.8 3.8 59 47-113 15-73 (93)
94 cd08764 Cyt_b561_CG1275_like N 26.3 2.2E+02 0.0047 23.9 5.9 66 83-148 58-123 (214)
95 PRK11026 ftsX cell division AB 24.9 3.9E+02 0.0086 23.5 7.7 27 230-256 280-306 (309)
96 TIGR00945 tatC Twin arginine t 24.7 4.1E+02 0.0088 22.0 11.2 38 120-157 52-89 (215)
97 KOG1288 Amino acid transporter 24.3 7.5E+02 0.016 25.0 10.9 57 43-104 294-350 (945)
98 cd08763 Cyt_b561_CYB561 Verteb 24.1 2.5E+02 0.0055 21.8 5.6 63 83-148 41-104 (143)
99 PF02133 Transp_cyt_pur: Perme 24.1 24 0.00051 32.6 -0.2 39 61-105 220-258 (440)
100 TIGR01478 STEVOR variant surfa 24.0 42 0.0009 29.3 1.2 16 211-226 276-291 (295)
101 cd08763 Cyt_b561_CYB561 Verteb 23.8 2E+02 0.0043 22.4 4.9 32 219-250 33-64 (143)
102 PF07086 DUF1352: Protein of u 23.8 3.9E+02 0.0084 21.9 6.7 16 129-144 37-52 (186)
103 PF01102 Glycophorin_A: Glycop 23.7 1.5E+02 0.0033 22.4 4.1 27 231-257 66-92 (122)
104 PTZ00370 STEVOR; Provisional 23.7 45 0.00098 29.1 1.4 16 211-226 272-287 (296)
105 TIGR01109 Na_pump_decarbB sodi 22.8 5.7E+02 0.012 23.1 8.0 76 43-120 145-235 (354)
106 COG2181 NarI Nitrate reductase 22.7 2.2E+02 0.0047 24.1 5.2 54 196-249 91-144 (228)
107 cd08766 Cyt_b561_ACYB-1_like P 22.2 3E+02 0.0065 21.4 5.7 64 83-148 41-104 (144)
108 PRK11281 hypothetical protein; 22.1 9.8E+02 0.021 25.5 13.2 27 83-109 544-570 (1113)
109 COG0733 Na+-dependent transpor 21.3 6.9E+02 0.015 23.5 18.2 46 24-69 194-240 (439)
110 PF11345 DUF3147: Protein of u 21.0 3.5E+02 0.0075 19.9 7.5 48 169-221 4-51 (108)
111 PF04835 Pox_A9: A9 protein co 20.4 1.4E+02 0.003 19.1 2.7 30 83-112 23-52 (54)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-37 Score=275.77 Aligned_cols=212 Identities=21% Similarity=0.381 Sum_probs=195.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCC-cchhhhHHHHHHHHHHhhhhhhhhhccccchhh
Q 024723 36 KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM-WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDN 114 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~-~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~ 114 (263)
.+.-..+.+++..+|+.+|||+|+.++.|++++| |+|++++- ..++..++.+++++|..+|.+||++|||++++.
T Consensus 234 ~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s 309 (449)
T KOG1304|consen 234 LPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS 309 (449)
T ss_pred cccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce
Confidence 3345568899999999999999999999999999 89998752 267779999999999999999999999999999
Q ss_pred hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 024723 115 ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLL 194 (263)
Q Consensus 115 il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~ 194 (263)
|+.|+|+ +++.+.+++++++.++++||++++|..+++|+.+.++.+++++++....+|..+++.+..+|..+||++.++
T Consensus 310 ITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fi 388 (449)
T KOG1304|consen 310 ITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFI 388 (449)
T ss_pred EEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhH
Confidence 9999998 899999999999999999999999999999999887766666677889999999999999999999999999
Q ss_pred HhhhhhhhhhHHHhHhHHHHHHHhCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024723 195 GFFGGFAFAPTTYFLPCIIWLAIYKPRK---YSLSWCINWICIVLGLCLMILSPIGGLRQI 252 (263)
Q Consensus 195 ~lvGs~~~~~l~~i~P~l~~l~~~~~~~---~~~~~~~~~~ii~~g~~~~v~gt~~si~~i 252 (263)
+++||++++.+.+++|++++++.++++. .+|+++.+.+++++|++.++.|||+|+.++
T Consensus 389 sLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 389 SLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999998765 368889999999999999999999999874
No 2
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2e-36 Score=280.36 Aligned_cols=248 Identities=19% Similarity=0.296 Sum_probs=208.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCCCcccccccCCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCC
Q 024723 2 PLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 81 (263)
Q Consensus 2 s~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~ 81 (263)
|.++.++++.+...+.+..+.++..++.+++ .+.++..++.++++++|+|++|.++|++++|| |||++|+
T Consensus 197 S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F~- 266 (473)
T PLN03074 197 SFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKFK- 266 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhccc-
Confidence 5667776666656666677777665554332 45577889999999999999999999999999 9999988
Q ss_pred cchhhhHHHHHHHHHHhhhhhhhhhccccchh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh
Q 024723 82 WRGVVVAYIVVALCYFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 159 (263)
Q Consensus 82 ~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 159 (263)
++..++...+...|..+|+.||++|||++++ +.+.|+|.+. ...++++++.++++.+||+++.|..+.+|+....+
T Consensus 267 -~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~ 344 (473)
T PLN03074 267 -YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH 344 (473)
T ss_pred -chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 8888999999999999999999999998764 6787898654 46789999999999999999999999999987542
Q ss_pred ccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC-------------CCch-
Q 024723 160 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR-------------KYSL- 225 (263)
Q Consensus 160 ~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~-------------~~~~- 225 (263)
..+....|..+|+.+++.++++|+.+|+|+++++++||++++.+++++|+++|++.++++ .++|
T Consensus 345 --~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 422 (473)
T PLN03074 345 --DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWT 422 (473)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccc
Confidence 234567889999999999999999999999999999999999999999999999976553 1122
Q ss_pred -hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccCC
Q 024723 226 -SWCINWICIVL-GLCLMILSPIGGLRQIILQAKDYKFYS 263 (263)
Q Consensus 226 -~~~~~~~ii~~-g~~~~v~gt~~si~~ii~~~~~~~~f~ 263 (263)
+.+.|++++++ |++..+.|||+|++++++++++|+.|+
T Consensus 423 ~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 423 GMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred eehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 24789999986 555578999999999999999999874
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.7e-36 Score=279.95 Aligned_cols=206 Identities=16% Similarity=0.236 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCC-CC
Q 024723 43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EK 121 (263)
Q Consensus 43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl-~~ 121 (263)
.+.+.++|+++|||.||.+.|++++|| +||+++++.+++.+++.++.++|..+|++||++|||+++++++.|+ |.
T Consensus 256 ~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~ 331 (467)
T PTZ00206 256 NRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV 331 (467)
T ss_pred hHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC
Confidence 468999999999999999999999999 8888777778999999999999999999999999999999999999 56
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhh
Q 024723 122 PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFA 201 (263)
Q Consensus 122 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~ 201 (263)
+|....++++++.+.++++||++.+|+|+.+++.+..+. ++.+.+++...+..+++.+.++|+.+|+++.+++++||++
T Consensus 332 ~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~ 410 (467)
T PTZ00206 332 NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA-RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSIS 410 (467)
T ss_pred CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc-ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHH
Confidence 677888899999999999999999999999999874332 2234456666677777788999999999999999999999
Q ss_pred hhhHHHhHhHHHHHHH---hCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024723 202 FAPTTYFLPCIIWLAI---YKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQII 253 (263)
Q Consensus 202 ~~~l~~i~P~l~~l~~---~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~si~~ii 253 (263)
++.++|++|++||++. .+++...++++.+++++++|++..+.|||+|+++.+
T Consensus 411 ~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 411 GGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999984 233333345678999999999999999999999875
No 4
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-36 Score=272.03 Aligned_cols=245 Identities=44% Similarity=0.874 Sum_probs=217.3
Q ss_pred CchhHHHHHHHHHHHHHHHhhhccCCC-CcccccccCCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCC
Q 024723 1 MPLPVSLWQLHYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 79 (263)
Q Consensus 1 ~s~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 79 (263)
+|..+++|++.|..+.+++++.+|... ..+.+.++. .+.. ..++++|++.|+|++|.++||||++| |+|+++
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~-~~~~--~~f~a~g~iaFaf~gH~v~peIq~tM----k~p~~f 260 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL-GTIP--TVFTALGIIAFAYGGHAVLPEIQHTM----KSPPKF 260 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC-CCCc--chhhhhhheeeeecCCeeeeehHhhc----CCchhh
Confidence 478899999999999999999999776 332333211 2221 11899999999999999999999999 888885
Q ss_pred CCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh
Q 024723 80 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 159 (263)
Q Consensus 80 ~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 159 (263)
+ |++..++.+++++|...++.||++|||+++|+++.|++.+.|....+++++.+|++.++.++..|..+.+|+....+
T Consensus 261 ~--~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~ 338 (437)
T KOG1303|consen 261 K--KALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVK 338 (437)
T ss_pred h--hHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccC
Confidence 5 99999999999999999999999999999999999997567899999999999999999999999999999998765
Q ss_pred ccC--CccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHH-HHH
Q 024723 160 LNF--SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWIC-IVL 236 (263)
Q Consensus 160 ~~~--~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~i-i~~ 236 (263)
+++ ++...+|.+.|+..++.+.++|+.+|+|+++++++|++....+++++|+++|++.+++++...+|+.+|.+ .++
T Consensus 339 ~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~ 418 (437)
T KOG1303|consen 339 HPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVV 418 (437)
T ss_pred CccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Confidence 441 24566899999999999999999999999999999999999999999999999999998888899999999 799
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024723 237 GLCLMILSPIGGLRQIIL 254 (263)
Q Consensus 237 g~~~~v~gt~~si~~ii~ 254 (263)
|+++++....++++.++.
T Consensus 419 ~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 419 GLLLSVLAAVGGVRSLII 436 (437)
T ss_pred hhhHHHHHHHHHHHHHhh
Confidence 999999999999988875
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.4e-35 Score=270.74 Aligned_cols=209 Identities=30% Similarity=0.616 Sum_probs=188.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCC-CCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhh
Q 024723 38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIL 116 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il 116 (263)
...++.+++.++|+++|+|.||+++|++++|| |||++ +++++++.+++.+++++|..+|+.||++||+++++|++
T Consensus 187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il 262 (409)
T PF01490_consen 187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNIL 262 (409)
T ss_pred ccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhh
Confidence 45677899999999999999999999999999 88888 56778999999999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHHHHhhcC
Q 024723 117 LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFP 188 (263)
Q Consensus 117 ~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~vA~~ip 188 (263)
+|+|++++...++++++.++++.+||++.+|.++.+|+.+.++ .+.+.++++|..+|+.++..+.++|+.+|
T Consensus 263 ~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp 342 (409)
T PF01490_consen 263 LNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVP 342 (409)
T ss_pred hcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhcc
Confidence 9999877889999999999999999999999999999988753 12234567889999999999999999999
Q ss_pred ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 024723 189 FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSW-----CINWICIVLGLCLMILSPIGGLR 250 (263)
Q Consensus 189 ~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~-----~~~~~ii~~g~~~~v~gt~~si~ 250 (263)
+++++++++|++++..++|++|+++|+|.+++++.+.++ ..++.++++|++.++.|||++++
T Consensus 343 ~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 409 (409)
T PF01490_consen 343 NFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSIQ 409 (409)
T ss_pred chhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHcC
Confidence 999999999999999999999999999998887654433 44788999999999999998863
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=222.72 Aligned_cols=245 Identities=20% Similarity=0.274 Sum_probs=204.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhccC-CCCcccccccCCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCC
Q 024723 2 PLPVSLWQLHYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 80 (263)
Q Consensus 2 s~~~~~~~~~~~~~~~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~ 80 (263)
|.++++..+.++...+.....+.. ..+..++ .+...++.+.+.++++++|+|.||+|..++++|| +||++++
T Consensus 155 S~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~ 227 (411)
T KOG1305|consen 155 SALSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKK 227 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHH
Confidence 344555555555555555555443 1222222 1223333689999999999999999999999999 9999999
Q ss_pred CcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHH------HHHHHHHHHHHHHHHhHhhhHHHHHHHHH
Q 024723 81 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL------IVMANFFVVVHVIGSYQIYAMPVFDMIET 154 (263)
Q Consensus 81 ~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~------~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 154 (263)
++++...+...++.+|..+|.+||+.|||++++|++.+++..+.. ...++..+.++.+.++|+..+|+|..+++
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~ 307 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDE 307 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 999999999999999999999999999999999999999864433 36899999999999999999999999998
Q ss_pred HHhhhccC--CccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHH
Q 024723 155 LLVKKLNF--SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWI 232 (263)
Q Consensus 155 ~~~~~~~~--~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ 232 (263)
.+.++... +.++.++.+++..++..+.+.|+.+|+++++++++||+++..++|++|+++|++..++ +.+++...++
T Consensus 308 ~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~ 385 (411)
T KOG1305|consen 308 LLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALI 385 (411)
T ss_pred HhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHH
Confidence 88765332 3456778899999999999999999999999999999999999999999999999876 5667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024723 233 CIVLGLCLMILSPIGGLRQIILQ 255 (263)
Q Consensus 233 ii~~g~~~~v~gt~~si~~ii~~ 255 (263)
..++++..++.|+...+.++..+
T Consensus 386 ~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 386 FLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=1e-30 Score=224.55 Aligned_cols=215 Identities=17% Similarity=0.297 Sum_probs=193.7
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCC
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~ 120 (263)
+..+++.++|+++|+|+.|..+|+++..| +||++|. ..+.|+.+...++-..+|..||++|||.|++.|.+|+|
T Consensus 300 di~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp 373 (524)
T KOG4303|consen 300 DINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP 373 (524)
T ss_pred EcccCceEEEEEEEeeeceeecccccccc----CChhHhe--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC
Confidence 44588889999999999999999999999 9999998 89999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhcc---C-------CccchhHHHHHHHHHHHHHHHHhhcCCh
Q 024723 121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLN---F-------SPTRLLRFVVRNLYVASTMFIGITFPFF 190 (263)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~---~-------~~~~~~~~~~r~~~v~~~~~vA~~ip~~ 190 (263)
.++ +...+++..++..+.|||+-++.+.+.+|+.+....+ + .+-+.|...+|+++++++.++|+.+|+|
T Consensus 374 ~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf 452 (524)
T KOG4303|consen 374 NQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHF 452 (524)
T ss_pred ccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHH
Confidence 755 5668899999999999999999999999987754321 1 1123455688999999999999999999
Q ss_pred hHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 024723 191 GGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFY 262 (263)
Q Consensus 191 ~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~si~~ii~~~~~~~~f 262 (263)
..+++++|++.++.++|+.|++||++++++.....++..+..++++|..+++.|.|.|..++++.++...+|
T Consensus 453 ~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 453 VELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADSD 524 (524)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence 999999999999999999999999999988877788899999999999999999999999999998876543
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.63 E-value=2.9e-14 Score=130.75 Aligned_cols=205 Identities=16% Similarity=0.225 Sum_probs=149.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhC
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS 118 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~n 118 (263)
+..+.++..++|++.|||+||+++|++++|| |+++++..+|+...+..+..++|..+++.+|..+|+.+.++++++
T Consensus 189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~ 264 (415)
T COG0814 189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA 264 (415)
T ss_pred hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHc
Confidence 5778899999999999999999999999999 555554566999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHH--------------HHHHHhhhccC--Cc-cchhH-HHHHHHHHHHH
Q 024723 119 LEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM--------------IETLLVKKLNF--SP-TRLLR-FVVRNLYVAST 180 (263)
Q Consensus 119 l~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~--------------~~~~~~~~~~~--~~-~~~~~-~~~r~~~v~~~ 180 (263)
.++++. ..............++|.+.++.... .++...++++. ++ ...+. .......+...
T Consensus 265 ~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~ 343 (415)
T COG0814 265 KEQNIS-LLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYP 343 (415)
T ss_pred cCchHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence 986443 33344444444446666666555433 33333221111 11 11122 23344455667
Q ss_pred HHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 024723 181 MFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGG 248 (263)
Q Consensus 181 ~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~s 248 (263)
..++...|..+.+.+.+|+.....+.++.|...+.|....+..+.++...++++++|+..+..-.+++
T Consensus 344 ~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 344 WGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999987776555444333567788888888777766544
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.28 E-value=8.3e-10 Score=100.76 Aligned_cols=194 Identities=18% Similarity=0.311 Sum_probs=142.8
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhh--hhhhhh---------
Q 024723 37 TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPV--ALIGYW--------- 105 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~--g~~gy~--------- 105 (263)
+.+.++...+.++|+..+||+.|.++|++.+.++ +|++|.+ |++.++..+..++|.+. .+.|-.
T Consensus 178 ~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~k~~--~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~ 252 (394)
T PF03222_consen 178 PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPKKIR--KAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAI 252 (394)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3567889999999999999999999999999994 4555544 89998888888888764 344411
Q ss_pred hccccchh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHH
Q 024723 106 MFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFI 183 (263)
Q Consensus 106 ~fG~~~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~v 183 (263)
.-|++..+ ..+.+..++.+......+...+.+.+||--.....+|.+++.++.++ +...|...........+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~----~~~~r~~~~~ltf~ppl~~ 328 (394)
T PF03222_consen 253 AQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN----NSSGRLKTWLLTFLPPLIF 328 (394)
T ss_pred hcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccchHHHHHHHHHhHHHH
Confidence 22222221 34445545566777889999999999999999999999999886521 1224444455567778899
Q ss_pred HhhcCC-hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc-h----hHHHHHHHHHHHHHH
Q 024723 184 GITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS-L----SWCINWICIVLGLCL 240 (263)
Q Consensus 184 A~~ip~-~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~-~----~~~~~~~ii~~g~~~ 240 (263)
|...|+ |-..+++.| .....+..++|+++.+|.|++++.+ + .+.....++++|+..
T Consensus 329 a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~i 390 (394)
T PF03222_consen 329 ALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILI 390 (394)
T ss_pred HHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHH
Confidence 999995 789999999 9999999999999999998765432 1 234445555555443
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.25 E-value=4.5e-10 Score=102.06 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=130.4
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh------
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED------ 113 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~------ 113 (263)
..+.++..+++...++|++|.+++++.+++ +|+ +++.+|+..++..+++++|.++........+.+.-.
T Consensus 175 ~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~ 249 (381)
T TIGR00837 175 SYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKG 249 (381)
T ss_pred ccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence 466789999999999999999999999998 545 445669999999999999998865555444322111
Q ss_pred ----h---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhh
Q 024723 114 ----N---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT 186 (263)
Q Consensus 114 ----~---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ 186 (263)
+ ...+.-.+.+...+..+...+.+..|+.-.....+|.+++.++++.+ +.+|.....+..+...++|.+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~----~~~~~~~~~~~~~~pl~~a~~ 325 (381)
T TIGR00837 250 GNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS----KKGRFKTGLLTFLPPLVFALF 325 (381)
T ss_pred CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----cCCCchhhhhhHHhHHHHHHH
Confidence 1 12221123455677888889999999999999999998888765321 123455566667888899999
Q ss_pred cCChh-HHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 187 FPFFG-GLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 187 ip~~~-~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
.|+.. ..++..| +.+..+.+++|++++++.|++
T Consensus 326 ~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 326 YPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99766 8999999 888999999999999998765
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.03 E-value=2.1e-08 Score=91.51 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=127.7
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHh--hhhhhhhh---------cc
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFP--VALIGYWM---------FG 108 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~--~g~~gy~~---------fG 108 (263)
..+...+.++|++.+||+.|+++|++.+.++ +|++ +.||++.++..+..++|.+ ..+.|-.. -|
T Consensus 189 ~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~ 263 (414)
T PRK10483 189 SYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKG 263 (414)
T ss_pred hhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 3456788999999999999999999999983 4555 4559999999998888876 33333222 23
Q ss_pred ccchh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhh
Q 024723 109 NKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT 186 (263)
Q Consensus 109 ~~~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ 186 (263)
++... ..+.+..++.+......+...+.+.+||--.....+|.+++.++.+++ ...|.....+..+...++|..
T Consensus 264 ~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~ 339 (414)
T PRK10483 264 GNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLL 339 (414)
T ss_pred CChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHH
Confidence 32211 122222233456677888889999999999999999999998865422 224444556678899999999
Q ss_pred cCC-hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 187 FPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 187 ip~-~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
.|+ |-..+++.|.. ...+.-++|+++-++.|++
T Consensus 340 ~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 340 FPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 996 88999999976 6678889999999999875
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.90 E-value=4.7e-08 Score=89.25 Aligned_cols=190 Identities=15% Similarity=0.191 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc----------hh
Q 024723 44 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----------ED 113 (263)
Q Consensus 44 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~----------~~ 113 (263)
-.+.++|++.+||+.|+++|++.+.++ +|++| .||++.++..+..++|.+.=......-+.+. .+
T Consensus 182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~~--~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~ 256 (403)
T PRK15132 182 LALSAIPVIFTSFGFHGSVPSIVSYMG---GNIRK--LRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLN 256 (403)
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHhC---cCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchH
Confidence 489999999999999999999999983 34444 4489998888888877754433332222111 11
Q ss_pred hhhhCC---CCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCC-
Q 024723 114 NILLSL---EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF- 189 (263)
Q Consensus 114 ~il~nl---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~- 189 (263)
++++.+ .++.+....+.+...+.+.+||--.....+|.+.+.++.+.+ ...|.....+..+.++++|...|+
T Consensus 257 ~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~ 332 (403)
T PRK15132 257 GLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRG 332 (403)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHH
Confidence 222322 234567778888889999999999999999999998864321 223566667778899999999995
Q ss_pred hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC---CCch--hHHHHHHHHHHHHHHHHH
Q 024723 190 FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR---KYSL--SWCINWICIVLGLCLMIL 243 (263)
Q Consensus 190 ~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~---~~~~--~~~~~~~ii~~g~~~~v~ 243 (263)
|...+++.|. ....+.+++|+++-+|.++++ +.+. ++...++.+++|++..+.
T Consensus 333 F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 333 FVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 7889999986 578899999999999988654 2221 456677777777665554
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.85 E-value=2.6e-07 Score=84.31 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHH--hhhhhhhh---------hcccc
Q 024723 42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF--PVALIGYW---------MFGNK 110 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~--~~g~~gy~---------~fG~~ 110 (263)
+..+..++|++.+||+.|+++|++.+.++ +|+++.+ +++.....+..++|. ..++.|-. .-|++
T Consensus 192 ~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~~--kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~n 266 (415)
T PRK09664 192 FPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKLI--KSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGN 266 (415)
T ss_pred HHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 34688899999999999999999999983 4555544 788877777777773 33444422 23333
Q ss_pred chh---hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhc
Q 024723 111 VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITF 187 (263)
Q Consensus 111 ~~~---~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~i 187 (263)
+.+ ....+ .++.+......+...+.+.+||--......|.+.+.++.+++ ...|.....+..+...++|...
T Consensus 267 v~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~----~~~r~~~~~ltflPPl~~al~~ 341 (415)
T PRK09664 267 VDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS----HGGRFKTVLLTFLPPALLYLIF 341 (415)
T ss_pred chHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhhHHHHHHh
Confidence 333 12223 234567778888999999999999999999999998865421 2245555566788999999999
Q ss_pred CC-hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC-CCCch----hHHHHHHHHHHHHHHHHH
Q 024723 188 PF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP-RKYSL----SWCINWICIVLGLCLMIL 243 (263)
Q Consensus 188 p~-~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~-~~~~~----~~~~~~~ii~~g~~~~v~ 243 (263)
|+ |-..++..|.. ...+.-++|+++-+|.|++ +.... .+..-++.+++|++..+.
T Consensus 342 P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 342 PNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence 97 88999999986 6688889999999999875 22211 344445566666555443
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.68 E-value=2.6e-07 Score=84.42 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=132.7
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCC--CCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch-----h
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE-----D 113 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~-----~ 113 (263)
.+.++..+.+...+||.+|+++|+...+.|++-+||+ +++.+|+..++..+..++|...-.......+.+.- +
T Consensus 184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ 263 (397)
T TIGR00814 184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ 263 (397)
T ss_pred hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence 4578999999999999999999999844432114333 34445888888888877777665555555443221 1
Q ss_pred --hhhh---CCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc----cCCccchhHHHHHHHHHHHHHHHH
Q 024723 114 --NILL---SLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL----NFSPTRLLRFVVRNLYVASTMFIG 184 (263)
Q Consensus 114 --~il~---nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~v~~~~~vA 184 (263)
+.+. |-.++.+...+..+...+.+..|+--.....+|.++..+.+.. ++.+++..+......+.+.++++|
T Consensus 264 nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 343 (397)
T TIGR00814 264 NISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVA 343 (397)
T ss_pred CcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 1122 1112345566677777889999999999999999998873211 112233344566677788899999
Q ss_pred hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 024723 185 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGL 238 (263)
Q Consensus 185 ~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~ 238 (263)
..-|++=++++-+|+-....+.|++|...-.|.-.-++.| ++..++++++.|+
T Consensus 344 ~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~-~~~~~~fv~~~g~ 396 (397)
T TIGR00814 344 YINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR-GRISNVFVTVIGL 396 (397)
T ss_pred HhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC-CCcchheeEeeec
Confidence 9999998888866666677899999998877764333322 1245666665553
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.67 E-value=6.5e-07 Score=82.08 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCCCCCC---CCC--CCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc-----h
Q 024723 43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-----E 112 (263)
Q Consensus 43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-----~ 112 (263)
.....++|++.+||+.|+.+|++...+|++-+ +++ +++.++++.++..+..++|...-...-..-+.+. +
T Consensus 209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~ 288 (443)
T PRK13629 209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKA 288 (443)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 46888999999999999999999998654322 223 4556688888888777777655544444333221 1
Q ss_pred h--hhh----hCCCC---c-----hHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh---hccC--CccchhHHHHH
Q 024723 113 D--NIL----LSLEK---P-----TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK---KLNF--SPTRLLRFVVR 173 (263)
Q Consensus 113 ~--~il----~nl~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~---~~~~--~~~~~~~~~~r 173 (263)
+ +++ +.+++ + .+......+...+.+.+||--.....+|.++.+..+ +.+. ..++..+....
T Consensus 289 qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~ 368 (443)
T PRK13629 289 QNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISM 368 (443)
T ss_pred hCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHH
Confidence 1 111 11222 1 345666777778899999999999999999988742 1111 12333455666
Q ss_pred HHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 024723 174 NLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSP 245 (263)
Q Consensus 174 ~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt 245 (263)
..+.+.++++|..-|++=++++-+|+-....+.|++|...-.|.-.-++.| ++..++++++.|++......
T Consensus 369 ~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~ 439 (443)
T PRK13629 369 IFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIV 439 (443)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHH
Confidence 777889999999999999999877777778899999998887764333332 22467888888876655433
No 16
>PRK11021 putative transporter; Provisional
Probab=98.20 E-value=0.0016 Score=59.75 Aligned_cols=175 Identities=13% Similarity=0.221 Sum_probs=99.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh--hhhhccccch--h
Q 024723 38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI--GYWMFGNKVE--D 113 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~--gy~~fG~~~~--~ 113 (263)
.+.++.++..++....|+|.|-......-+|+ |||+| ++.|++..+..++.++|.+.... +...++|... +
T Consensus 172 ~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~ 246 (410)
T PRK11021 172 GSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAA 246 (410)
T ss_pred CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccc
Confidence 34577899999999999999999999999999 89965 46699999999999999988754 3333344211 1
Q ss_pred ---hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHH-HHHHHHHHHHH
Q 024723 114 ---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRF-VVRNLYVASTM 181 (263)
Q Consensus 114 ---~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~-~~r~~~v~~~~ 181 (263)
.+.+..-. ++...+..+...+..+.+.........+.+...-+. +.+ +++.+.+- .+...+.....
T Consensus 247 ~~~~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~ 324 (410)
T PRK11021 247 SLPGIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSI 324 (410)
T ss_pred cHHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHH
Confidence 11211111 112223333344444444433333333333322211 111 22233332 22222222222
Q ss_pred HHH-hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723 182 FIG-ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 221 (263)
Q Consensus 182 ~vA-~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~ 221 (263)
++. ..-.+++++.++.. ....+.|.++.+-.+|+++++
T Consensus 325 l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 325 LLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 222 22357888777654 345688999888888887553
No 17
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.10 E-value=0.0015 Score=61.30 Aligned_cols=162 Identities=11% Similarity=0.117 Sum_probs=85.1
Q ss_pred HHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch---hh-------hhhCCC
Q 024723 51 DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE---DN-------ILLSLE 120 (263)
Q Consensus 51 ~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~---~~-------il~nl~ 120 (263)
.+.|+|.|-......-+|+ |||+|. ..|++..+..++.++|.+..+.-...-+++.. ++ ......
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDKN-YPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAG 276 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcC
Confidence 4578999999999999999 899653 56999999999999998766554433332211 01 111111
Q ss_pred CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHh-----h---hccCCccchhHHHHHHHH-HHHHHHHHhhcCChh
Q 024723 121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV-----K---KLNFSPTRLLRFVVRNLY-VASTMFIGITFPFFG 191 (263)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~-----~---~~~~~~~~~~~~~~r~~~-v~~~~~vA~~ip~~~ 191 (263)
.++...+..+...+..+.+..-......+.+...-+ + +.+ +++.+.+-+.-... .....++....|+.+
T Consensus 277 -~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~ 354 (474)
T TIGR03813 277 -LSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQ 354 (474)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 123333444444444444443332222232222211 0 111 22233332222222 222233334467765
Q ss_pred HHHHhhhhhh--hhhHHHhHhHHHHHHHhC
Q 024723 192 GLLGFFGGFA--FAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 192 ~v~~lvGs~~--~~~l~~i~P~l~~l~~~~ 219 (263)
+.++.+.+.+ ...+.|+++.+..+++++
T Consensus 355 ~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~ 384 (474)
T TIGR03813 355 AAFQILSQLTVILYLVMYLLMFASAIYLRY 384 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544433 334678888877777664
No 18
>PRK10746 putative transport protein YifK; Provisional
Probab=98.08 E-value=0.0021 Score=60.11 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=101.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc-ch---hh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-VE---DN 114 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~-~~---~~ 114 (263)
+..+.++..++....|+|.|-......-.|+ |||+| ++.|+...+.....++|......-......+ .. ++
T Consensus 196 ~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp 270 (461)
T PRK10746 196 AGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSP 270 (461)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCc
Confidence 4557889999999999999999999999999 99965 4668888777777778876543332222211 11 11
Q ss_pred ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHH-HHHHHHHHHHHHH
Q 024723 115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRF-VVRNLYVASTMFI 183 (263)
Q Consensus 115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~-~~r~~~v~~~~~v 183 (263)
...+... +....+.++...+..+.+.--..+...+.+...-+.+. .++++.+.+- .+..........+
T Consensus 271 ~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~ 349 (461)
T PRK10746 271 FVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCL 349 (461)
T ss_pred HHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1122221 22334555666666666655555555555554432110 0122222222 2222222223334
Q ss_pred HhhcCChhHHHHhhhhhhh--hhHHHhHhHHHHHHHhCC
Q 024723 184 GITFPFFGGLLGFFGGFAF--APTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 184 A~~ip~~~~v~~lvGs~~~--~~l~~i~P~l~~l~~~~~ 220 (263)
....|+-+.+++.+-++++ ..+.++++++.+++.+++
T Consensus 350 ~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 350 NYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456665655555443332 478899999999998765
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=98.04 E-value=0.0035 Score=58.02 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723 42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 104 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 104 (263)
+.++..++....|+|.|-.....+-.|+ |||+| +..|++..+..++.++|.+......
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999 99965 3569999999999999988765433
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.03 E-value=0.0025 Score=59.24 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 104 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 104 (263)
..+..+..++....|+|.|-......-+|+ |||+| +..|++..+..++.++|.+..+.-.
T Consensus 188 ~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 188 GTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999 99965 3569999999999999998886643
No 21
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.02 E-value=0.001 Score=61.74 Aligned_cols=57 Identities=19% Similarity=0.417 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723 42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 103 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g 103 (263)
+.++..++....|+|.|-......-+|+ |||+| ++.|++..+..++.++|.+.....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999 99975 456999999999999998876543
No 22
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.96 E-value=0.0011 Score=61.02 Aligned_cols=172 Identities=13% Similarity=0.223 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh---hh-
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED---NI- 115 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~---~i- 115 (263)
..+..++.+++...|+|.|-...+...+|+ || + +..|++.++..++.++|.+....-....+++..+ +.
T Consensus 185 ~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~-k--~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~ 257 (426)
T PF13520_consen 185 SGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN-K--TIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSP 257 (426)
T ss_dssp SSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS-H--HHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHH
T ss_pred ccccchhhHHHHHHhhcccccccccccccc----cc-h--hheeecccchhHHHHHHhhhhheeeecccchhhhcccccc
Confidence 344467899999999999999999999998 55 3 3559999999999999999876655555442211 11
Q ss_pred ------hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-----cC--CccchhHHHHHHHHHHHHHH
Q 024723 116 ------LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-----NF--SPTRLLRFVVRNLYVASTMF 182 (263)
Q Consensus 116 ------l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~~--~~~~~~~~~~r~~~v~~~~~ 182 (263)
.+... +++...+..++..+..+.+.........+.++..-+.+. .+ +++...+-.+-...+.....
T Consensus 258 ~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~ 336 (426)
T PF13520_consen 258 SPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILL 336 (426)
T ss_dssp CHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHH
T ss_pred cccchhhcccc-ccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHH
Confidence 11111 224555666777777777777777676666666554321 00 11122222221111111111
Q ss_pred HHh-hcC--ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723 183 IGI-TFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 221 (263)
Q Consensus 183 vA~-~ip--~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~ 221 (263)
+.. ..| +++.+.+.. .....+.++++.+.+++.++++
T Consensus 337 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 337 LLFLFIPQSSFDILVSLS--SVGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp HHTTTSSSSHHHHHHHHH--HHHTHHHHHHHHHHHHHTHHHS
T ss_pred HHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc
Confidence 111 234 344454433 3334577777777777666543
No 23
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.94 E-value=0.0043 Score=58.08 Aligned_cols=170 Identities=12% Similarity=0.157 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc----hh----
Q 024723 42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----ED---- 113 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~----~~---- 113 (263)
+.++..++....|+|.|-.....+-.|. ||++ ++.|++..+...+.++|.+..+..+...+++. ++
T Consensus 194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~~k--~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~ 267 (468)
T TIGR03810 194 MTQVKNMMLVTVWVFIGIEGASMLSARA----EKRS--DVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMA 267 (468)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHhhc----cCcc--cchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHH
Confidence 4567788899999999999888888887 6643 45599999999999999998876554443211 11
Q ss_pred hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHHH-HHHHHHHHHHHHH
Q 024723 114 NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFV-VRNLYVASTMFIG 184 (263)
Q Consensus 114 ~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~-~r~~~v~~~~~vA 184 (263)
...++.- +++...+..++..++.+.+.--......+.....-+. +.+ +++.+.+-+ +...+.....++.
T Consensus 268 ~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~ 345 (468)
T TIGR03810 268 YVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTT 345 (468)
T ss_pred HHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 1222222 2344556666666666666655555444444332211 111 222333322 2222221111111
Q ss_pred hh-cCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723 185 IT-FPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 221 (263)
Q Consensus 185 ~~-ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~ 221 (263)
.. -+.++.+.++.+ ....+.|.++++.++++++++
T Consensus 346 ~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 346 LFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 11 123555555543 245689999999999886543
No 24
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.93 E-value=0.0037 Score=59.90 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc---chhh-
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK---VEDN- 114 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~---~~~~- 114 (263)
|..+.+++.+.....|+|.|-......-.|+ |||+| ++.+++..++.+++++|.++...-...-..+ ..++
T Consensus 227 p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~----knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~ 301 (557)
T TIGR00906 227 PYGFTGVLSGAATCFFAFIGFDAIATTGEEV----KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPF 301 (557)
T ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHH
Confidence 4456789999999999999999999999999 99976 4669999999999999998875543322211 1112
Q ss_pred --hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHHHH
Q 024723 115 --ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIG 184 (263)
Q Consensus 115 --il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~vA 184 (263)
...... .++...+..+......+.+.........+.+...-+.+ .+.+.+...+-.+-.. ..+.+++
T Consensus 302 ~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~--iv~~il~ 378 (557)
T TIGR00906 302 PVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSG--AIAALMA 378 (557)
T ss_pred HHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHH--HHHHHHH
Confidence 222222 23444555555555555555555555555554432211 1112222222222111 2223333
Q ss_pred hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723 185 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 185 ~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~ 219 (263)
. +.+++.+.++.. .+..+.|.++++..+.+|+
T Consensus 379 ~-~~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 379 F-LFDLKALVDLLS--IGTLLAYSLVAACVLILRY 410 (557)
T ss_pred H-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 3 335666666552 3356889999888777764
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=97.86 E-value=0.0074 Score=55.65 Aligned_cols=170 Identities=10% Similarity=0.024 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc--ch--h-
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK--VE--D- 113 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~--~~--~- 113 (263)
+..+.++..++....|+|.|........+|+ |||+| +..|++..+..++.++|.+...........+ .+ +
T Consensus 191 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~ 265 (429)
T TIGR00909 191 PMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAP 265 (429)
T ss_pred CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcH
Confidence 4456788999999999999999999999999 89864 4559999999999999998875543322111 00 1
Q ss_pred --hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHHH
Q 024723 114 --NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFI 183 (263)
Q Consensus 114 --~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~v 183 (263)
.+..+.. +++...+..+...+..+.+..-......+.+...-+.+ .+.+.+.+.+-.+-.. ..+. +
T Consensus 266 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~-~ 341 (429)
T TIGR00909 266 LSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAA-L 341 (429)
T ss_pred HHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHH-H
Confidence 1222222 24455566677777777766665555555554433211 1111122222111111 1111 1
Q ss_pred HhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723 184 GITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 184 A~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~ 219 (263)
.....+++.+.++.+ .+..+.|++.++..+++++
T Consensus 342 ~~~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~ 375 (429)
T TIGR00909 342 LASLVPLEGLAELTS--IGTLIAFAAVNVAVIILRR 375 (429)
T ss_pred HHHHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 122356777776553 2335677777666666553
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.83 E-value=0.0057 Score=57.35 Aligned_cols=59 Identities=8% Similarity=0.118 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW 105 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~ 105 (263)
.+.++..++....|+|.|-......-+|+ || +++..|++..+..++.++|.+.......
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--KSDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678889999999999999999999999 77 3345599999999999999888765433
No 27
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.83 E-value=0.0074 Score=55.94 Aligned_cols=63 Identities=8% Similarity=0.110 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM 106 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~ 106 (263)
+....++..++....|+|.|-......-.|+ |||+| +..|+...+...+.++|.+........
T Consensus 183 ~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 183 TTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATMLGTGLAGIIYIAATQVISGM 245 (435)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557799999999999999999999999999 99964 355999999999999999888655433
No 28
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.79 E-value=0.0075 Score=56.14 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=102.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh--hcccc---chh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW--MFGNK---VED 113 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~--~fG~~---~~~ 113 (263)
|..+.++..++....|+|.|-......-.|+ |||+| ++.|++..+.....++|.+..+.--. .+++. ..+
T Consensus 177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~ 251 (446)
T PRK10197 177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVG 251 (446)
T ss_pred cccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccC
Confidence 4567799999999999999999999999999 89975 45688888888888888876544222 22221 011
Q ss_pred ---hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHHH-HHHHHHHHHHH
Q 024723 114 ---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRFV-VRNLYVASTMF 182 (263)
Q Consensus 114 ---~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~-~r~~~v~~~~~ 182 (263)
...++... ++...+.+....+..+.+..-..+...+.+...-+.+. .++++.+.+-+ +.........+
T Consensus 252 ~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l 330 (446)
T PRK10197 252 SYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVV 330 (446)
T ss_pred cHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHH
Confidence 22333332 34445566666666666666655665555554332110 01222223322 22222222222
Q ss_pred HHhhcC--ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723 183 IGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 183 vA~~ip--~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~ 219 (263)
.....| .++.++++.+... .+.|+++++.+++.++
T Consensus 331 ~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 331 VNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 222233 3666777665444 4889999988888875
No 29
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.75 E-value=0.0029 Score=58.73 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=113.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhh
Q 024723 38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILL 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~ 117 (263)
...+..++..++-.-.|+|.|=.++=.+-.|+ |||+| ++.++..+++.++++.|.++=+..+.+- +.++++.
T Consensus 199 ~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~ 270 (479)
T KOG1287|consen 199 SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILS 270 (479)
T ss_pred CcCchHHHHHHHHHhhhcccCchhhccchHhh----cCccc-cchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcc
Confidence 34556688899999999999999999999999 99955 5779999999999999999877655543 2222222
Q ss_pred CC---------CCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCC----ccchhHH--HHHHHHHHHHHH
Q 024723 118 SL---------EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFS----PTRLLRF--VVRNLYVASTMF 182 (263)
Q Consensus 118 nl---------~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~----~~~~~~~--~~r~~~v~~~~~ 182 (263)
+- --+++. ..+-++..++.+.+.--.++...+.+...-++. +-+ ....++. ...++......+
T Consensus 271 S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG-~LP~~~s~i~~~~~TP~~allf~~~~~i 348 (479)
T KOG1287|consen 271 SDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREG-HLPAFFSMISVRRFTPRPALLFSGLLSI 348 (479)
T ss_pred cchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHcc-CccHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 11 012222 344555555555555544444444433332221 100 0000111 122333444455
Q ss_pred HHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCch
Q 024723 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSL 225 (263)
Q Consensus 183 vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~ 225 (263)
+....+|+..+++.++=.-.....+.+=+++|+|.++++..++
T Consensus 349 ~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 349 VLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 5566779999999998777777888889999999988876654
No 30
>PRK10249 phenylalanine transporter; Provisional
Probab=97.71 E-value=0.016 Score=54.14 Aligned_cols=172 Identities=16% Similarity=0.219 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc----hhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----EDN 114 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~----~~~ 114 (263)
+..+.++..++....|+|.|-......-+|+ |||+| +..|++..+.....++|......-....+++. .++
T Consensus 205 ~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k-~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p 279 (458)
T PRK10249 205 ATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK-SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSP 279 (458)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCc
Confidence 4567889999999999999999999999999 89976 45688888888888888775443332322211 111
Q ss_pred ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHH-HHHHHHHHHHHH
Q 024723 115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRF-VVRNLYVASTMF 182 (263)
Q Consensus 115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~-~~r~~~v~~~~~ 182 (263)
+.++.. .++...+..++..+..+.+..-......+.+...-+. +.+ +++.+.+- .+..++.....+
T Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l 357 (458)
T PRK10249 280 FVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVL 357 (458)
T ss_pred HHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHH
Confidence 112222 1233444455555555555444444444444333211 111 12222332 223222222222
Q ss_pred HHhhcCC--hhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723 183 IGITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 183 vA~~ip~--~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~ 219 (263)
+....|+ ++.+.++.+ ....+.|++|++.+++.++
T Consensus 358 ~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 358 INYLLPQKAFGLLMALVV--ATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3223332 444444432 2456999999999998874
No 31
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.69 E-value=0.013 Score=55.55 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhh
Q 024723 45 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA 100 (263)
Q Consensus 45 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g 100 (263)
....+....|+|.|-......-+|+ |||+| +..|++..+..++.++|.+..
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 4445556789999999999999999 99965 355999988888888887644
No 32
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.61 E-value=0.016 Score=54.26 Aligned_cols=173 Identities=9% Similarity=0.103 Sum_probs=93.3
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc-cc---hh--
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---ED-- 113 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~-~~---~~-- 113 (263)
....++..++....|+|.|-......-.|+ |||+| ++.|++..+.....++|.......-..... +. ++
T Consensus 203 ~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~ 277 (471)
T PRK11387 203 HGGLPILMTMVAVNFAFSGTELIGIAAGET----ENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPF 277 (471)
T ss_pred ccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChH
Confidence 344578888899999999999999999999 99965 456888888888888898876543333321 11 11
Q ss_pred -hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHHHHHHHHHHHHHHHH
Q 024723 114 -NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFVVRNLYVASTMFIG 184 (263)
Q Consensus 114 -~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~r~~~v~~~~~vA 184 (263)
.+.++.. .++...+..++..+..+.+.--......+.+...-+. +.+ +++...+-++-........++.
T Consensus 278 ~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~ 355 (471)
T PRK11387 278 VLVFEKVG-IPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFS 355 (471)
T ss_pred HHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHH
Confidence 2222332 2334445555555555555444444444444333221 111 1222223222111111111222
Q ss_pred hhcCChhHHHHhhhhhh--hhhHHHhHhHHHHHHHhCC
Q 024723 185 ITFPFFGGLLGFFGGFA--FAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 185 ~~ip~~~~v~~lvGs~~--~~~l~~i~P~l~~l~~~~~ 220 (263)
...+. ++.++.+.++. ...+.|+++.+.+++++++
T Consensus 356 ~~~~~-~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 356 SVVAP-DTVFVALSAISGFAVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33333332222 3346788898888887654
No 33
>PRK10836 lysine transporter; Provisional
Probab=97.60 E-value=0.028 Score=52.93 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 103 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g 103 (263)
.+..+..+.....|+|.|-......-.|+ |||+| ++.|++..++..+.++|......-
T Consensus 203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 203 GFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK-NIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777789999999999999999 99965 466888899999999999776543
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.60 E-value=0.038 Score=51.20 Aligned_cols=171 Identities=14% Similarity=0.259 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc-chh-----
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-VED----- 113 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~-~~~----- 113 (263)
.....+..++....++|.|-....+.-+|+ |||+|. ..|....+...+.++|......-....+++ ...
T Consensus 198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 272 (466)
T COG0531 198 GSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-IPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSA 272 (466)
T ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCc
Confidence 344578999999999999999999999999 888655 459999999999999999888777766652 111
Q ss_pred h---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHH
Q 024723 114 N---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMF 182 (263)
Q Consensus 114 ~---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~ 182 (263)
+ ...... +++...+..+...+..+.+..-......+.+...-+.+ .+++.+...+-..-...+.. .
T Consensus 273 p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~ 349 (466)
T COG0531 273 PLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--I 349 (466)
T ss_pred cHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--H
Confidence 1 111111 13445556666666666665444444333333322211 11111122222222222222 1
Q ss_pred HHhhcC----ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 183 IGITFP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 183 vA~~ip----~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
+....+ .++.+.++. .....+.|.++.+..++.+++
T Consensus 350 l~~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 350 LLLLFPLSSIAFNALVSLA--SVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHHHhhccccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 222222 244444443 344578999999998888765
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.60 E-value=0.012 Score=55.58 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 104 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 104 (263)
.+..++..++....|+|.|-.....+-.|+ |||+| +..|++..+..++.++|.+....-.
T Consensus 232 ~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 232 TSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR-TLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999 89965 3559999999999999999865443
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=97.57 E-value=0.017 Score=54.65 Aligned_cols=174 Identities=10% Similarity=0.095 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc-cc---hhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---EDN 114 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~-~~---~~~ 114 (263)
|..+.++..++....|+|.|-......-.|+ |||+| +..|++..++....++|............. +. .++
T Consensus 216 p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP 290 (499)
T PRK15049 216 PHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSP 290 (499)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCH
Confidence 4455667777888999999999999999999 99976 355888888888888887765543333221 11 122
Q ss_pred h---hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHH-HHHHHHHHHHHHH
Q 024723 115 I---LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRF-VVRNLYVASTMFI 183 (263)
Q Consensus 115 i---l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~-~~r~~~v~~~~~v 183 (263)
. .+... .++...+.++...+..+.+.--..+...+.+..+-+.+. .++++.+.+- ++..++.....++
T Consensus 291 ~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l 369 (499)
T PRK15049 291 FVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFL 369 (499)
T ss_pred HHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 22222 233445556666666666655555555555544332110 0122223332 2222222222223
Q ss_pred HhhcCC--hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 184 GITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 184 A~~ip~--~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
....|+ ++.++++.+ .+..+.|.+|.+.+++.|++
T Consensus 370 ~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 370 NYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 233332 455555553 44578999999999988753
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.56 E-value=0.048 Score=50.55 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVAL 101 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~ 101 (263)
+..+.++..++....|+|.|.......-+|+ |||+|. ..|++..+..++.++|...-.
T Consensus 187 ~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 187 PGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKRD-IPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccc-cCHHHHHHHHHHHHHHHHHHH
Confidence 3455688899999999999999999999999 899653 558988888888888876644
No 38
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.54 E-value=0.03 Score=52.44 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc-cc---hhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---EDN 114 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~-~~---~~~ 114 (263)
|..+.++..++....|+|.|-......-+|+ |||+|. ..|+...+.....+.|.+....-+..-+. +. +++
T Consensus 207 p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r~-iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p 281 (469)
T PRK11049 207 PKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KDPEKS-LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSP 281 (469)
T ss_pred cccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCHhhH-HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCc
Confidence 4556789999999999999999999999999 999753 55787766666677777655544322111 11 111
Q ss_pred ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHHHH-HHHHHHHHHH
Q 024723 115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFVV-RNLYVASTMF 182 (263)
Q Consensus 115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~-r~~~v~~~~~ 182 (263)
...... .++...+..++..+..+.+.--......+.+...-+. +.+ +++.+.+-++ ..++.....+
T Consensus 282 ~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~ 359 (469)
T PRK11049 282 FVELFVLVG-LPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVV 359 (469)
T ss_pred HHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHH
Confidence 111111 1233445555555555554433333433333333221 111 1223333222 2222222233
Q ss_pred HHhhcCChhHHHHhhhhh--hhhhHHHhHhHHHHHHHhCC
Q 024723 183 IGITFPFFGGLLGFFGGF--AFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 183 vA~~ip~~~~v~~lvGs~--~~~~l~~i~P~l~~l~~~~~ 220 (263)
+....|+..+..+.+-++ ....+.|.++.+.+++++++
T Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 360 LLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566654444433222 23457888888888887654
No 39
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.51 E-value=0.05 Score=50.79 Aligned_cols=173 Identities=12% Similarity=0.166 Sum_probs=93.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh--hhhhcccc--chhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI--GYWMFGNK--VEDN 114 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~--gy~~fG~~--~~~~ 114 (263)
+..+.++..+++...|+|.|-......-.|+ |||+| +..|++..+.....+.|...-.. +...+++- ..++
T Consensus 196 ~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP 270 (456)
T PRK10238 196 PHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSP 270 (456)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCc
Confidence 4456688888999999999999999999999 89965 35588776666666666543222 11122211 1111
Q ss_pred ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHH-HHHHHHHHHH
Q 024723 115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVV-RNLYVASTMF 182 (263)
Q Consensus 115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~-r~~~v~~~~~ 182 (263)
+..+... .+...+.+....+..+.+..-..+...+.+...-+.+ .+ +++.+.+-++ ..++.....+
T Consensus 271 ~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l 348 (456)
T PRK10238 271 FVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVL 348 (456)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHH
Confidence 2222322 2344445555555555555444555555544432211 11 2223333222 2222222222
Q ss_pred HHhhcC--ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 183 IGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 183 vA~~ip--~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
+....| .++.+.++.+ .+..+.|.+|.+.+++.+++
T Consensus 349 ~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 349 INYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 212233 2455555543 34568999999999988764
No 40
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.42 E-value=0.043 Score=51.03 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=48.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 103 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g 103 (263)
+..+.++..++....|+|.|-......-.|+ |||+| +..|++..+.....++|.+.....
T Consensus 197 ~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~ 256 (452)
T TIGR01773 197 PNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK-SITRATNSVIWRIIVFYLGSIFIV 256 (452)
T ss_pred cccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999999999999999999999 99965 355887777777788888764433
No 41
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.35 E-value=0.07 Score=49.75 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=46.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723 39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 102 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~ 102 (263)
+..+.++..++....|+|.|-......-.|+ |||+|. ..|+...+.....++|......
T Consensus 195 ~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~k~-iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPEKS-IPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred CcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999 899763 4477777766667777666433
No 42
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.34 E-value=0.1 Score=48.86 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723 42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 102 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~ 102 (263)
+.++..++....|+|.|-......-+|+ |||+| +..|++..+...+.++|.+....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEA----ANPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999 99965 45689999999999999987543
No 43
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.23 E-value=0.17 Score=47.55 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcc
Q 024723 44 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 108 (263)
Q Consensus 44 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 108 (263)
.+..++....|+|.|-......-+|+ |||+| ++.|++..+..++.+++.+..+.-+...+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56666677889999999999999999 99965 46688888887766554433333333333
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.97 E-value=0.35 Score=45.66 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723 43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 102 (263)
Q Consensus 43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~ 102 (263)
.++..++....|+|.|-......-+|+ |||+| +..|++..+...+.++|.+....
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 357778888999999999999999999 89965 35699999999999999986543
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.80 E-value=0.038 Score=50.87 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=103.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHH-----HHhhhhhhhhhcccc
Q 024723 36 KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALC-----YFPVALIGYWMFGNK 110 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~-----Y~~~g~~gy~~fG~~ 110 (263)
...|..+.+++.++-+.+|||++...+----.|- +||+|. .+|+..--..=..++ .++..++-+-.++++
T Consensus 196 GffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~ 270 (462)
T COG1113 196 GFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED 270 (462)
T ss_pred CcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence 3468999999999999999999988887777777 899764 335444322223333 445555555566554
Q ss_pred chh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc------c-CCccch-hHHHHHHHHHHHH
Q 024723 111 VED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL------N-FSPTRL-LRFVVRNLYVAST 180 (263)
Q Consensus 111 ~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~-~~~~~~-~~~~~r~~~v~~~ 180 (263)
.++ .++..+.- ++...+.|.........+.-=-.+...+++..+-.+.. + +++.-. ............+
T Consensus 271 ~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~ 349 (462)
T COG1113 271 GSPFVTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLG 349 (462)
T ss_pred CCcHHHHHHHcCC-cccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHH
Confidence 433 23333322 12333445544455555554455566666665532211 0 111222 3345566667777
Q ss_pred HHHHhhcCChhHHHHhhhhhhh--hhHHHhHhHHHHHHHhCC
Q 024723 181 MFIGITFPFFGGLLGFFGGFAF--APTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 181 ~~vA~~ip~~~~v~~lvGs~~~--~~l~~i~P~l~~l~~~~~ 220 (263)
.++....| +.++.++-+..+ ....+.+=.+.|+|.+|.
T Consensus 350 V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 350 VVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRKA 389 (462)
T ss_pred HHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888899 445554433332 345556667889998873
No 46
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.66 E-value=0.22 Score=50.80 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723 44 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 102 (263)
Q Consensus 44 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~ 102 (263)
++...++++.++|.|-.....+-.|+ |||++ ...++...++.+++++|+++.+.
T Consensus 281 ~f~~~~ai~F~A~tGi~agan~sgEl----KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 281 GFFSLFGIFFPSVTGILAGANISGDL----KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999999 99975 46699999999999999999753
No 47
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.45 E-value=0.051 Score=51.94 Aligned_cols=176 Identities=12% Similarity=0.119 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh--hcccc-chhh
Q 024723 38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW--MFGNK-VEDN 114 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~--~fG~~-~~~~ 114 (263)
.|..+.++...+-+..|+|.|-..+-..-.|- |||+|. ..+++..++..+.++|.+..+.--+ .|.|. ..++
T Consensus 227 ~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~----kNP~k~-IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~ 301 (554)
T KOG1286|consen 227 FPFGFKGVLSGAATAFFSFIGFELVATTAEEA----KNPRKA-IPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPG 301 (554)
T ss_pred CCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----cCCccc-ccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCC
Confidence 34458899999999999999988888888887 999754 5689999999999999988854332 23220 1111
Q ss_pred h------h--hCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccC----CccchhHHHHHHHHH-HHHH
Q 024723 115 I------L--LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNF----SPTRLLRFVVRNLYV-ASTM 181 (263)
Q Consensus 115 i------l--~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~r~~~v-~~~~ 181 (263)
. . -+.+.-.....+.+++..+.++.+---..++.-+.+..+-....-. +.++..+=...+++. ++.+
T Consensus 302 ~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~ 381 (554)
T KOG1286|consen 302 AALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGA 381 (554)
T ss_pred CccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHH
Confidence 1 0 0111112222478888888888888888888888877764322100 011111212222222 2233
Q ss_pred HHHhhcC-----ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 182 FIGITFP-----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 182 ~vA~~ip-----~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
+.+.... .|+.++++.| .+..+++.+=++.|++.|+.
T Consensus 382 l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w~~i~~~~i~~R~a 423 (554)
T KOG1286|consen 382 LAALNFSLGAATVFNWLVNLSS--IGTLFAWTLVALSHLRFRYA 423 (554)
T ss_pred HHHHHhccccchHHHHHHHHHh--HHHHHHHHHHHHHHeeeeec
Confidence 3333322 2588888875 34567888888888887643
No 48
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.25 E-value=0.3 Score=43.89 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=97.1
Q ss_pred cHHHHHHHHH-HHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh------
Q 024723 41 TVFNFFSALG-DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED------ 113 (263)
Q Consensus 41 ~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~------ 113 (263)
++.+...+.- ...++|.+.........++ +||++.+ |....+..++.++|...-...-..+|.+..+
T Consensus 176 g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~~~--k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~ 249 (359)
T TIGR00912 176 GLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKKIK--KSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPT 249 (359)
T ss_pred CcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccH
Confidence 3445555443 7888998877777777887 7776654 8999999999999998888877777754332
Q ss_pred -hhhhCCCCchHH---HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCC
Q 024723 114 -NILLSLEKPTWL---IVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF 189 (263)
Q Consensus 114 -~il~nl~~~~~~---~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~ 189 (263)
+..+..+-++.. ..+.-..-....+...-+..+.....+++.++.+++ +....-... ....+ ...|+
T Consensus 250 ~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~-~~~~~ 320 (359)
T TIGR00912 250 LELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY------SILILPVLM--VIFSI-SFFPD 320 (359)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHH-HHccc
Confidence 122222222222 223344456677777778888888888888765421 112211111 12222 34565
Q ss_pred hhHHHHhhh---hhhhhhHHHhHhHHHHHHHhC
Q 024723 190 FGGLLGFFG---GFAFAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 190 ~~~v~~lvG---s~~~~~l~~i~P~l~~l~~~~ 219 (263)
-.+-..... ...+....+++|.++.+...-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 321 SSNQLFDYLEFLPIIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222122222 233456777899987766543
No 49
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.12 E-value=1.2 Score=41.72 Aligned_cols=61 Identities=18% Similarity=0.055 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcc
Q 024723 43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 108 (263)
Q Consensus 43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 108 (263)
..+..+.....|+|.|-.....+-+|+ |||+|. ..|++..+..+..++|.+.-+......+
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP~r~-iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEET----KNPRRV-APRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHh----cCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456667777889999999999999999 999664 5688888888776665554444333333
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.65 E-value=0.017 Score=54.11 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc
Q 024723 40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 109 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 109 (263)
.++.++..++....++|.|-......-.|. |||+|. +.|+...+.....++|.+.....-...+.
T Consensus 197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k~-IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 197 GGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRKT-IPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred cchhHHHHhhhhhhcccccccccccccccC----CCchhh-hhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 347899999999999999999999999998 899654 66999999999999999887765555554
No 51
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=92.80 E-value=7 Score=36.30 Aligned_cols=114 Identities=16% Similarity=0.065 Sum_probs=59.7
Q ss_pred CCcHHHHHHHHHHHHHHh-cCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhh----ccccchh
Q 024723 39 AGTVFNFFSALGDVAFAY-AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM----FGNKVED 113 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~----fG~~~~~ 113 (263)
+....++..+++..+=.+ ..-.+.+...+.+ |+|++.. +...+++....+....+|..+-.. +|+...+
T Consensus 203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~ 276 (442)
T TIGR00800 203 STGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS 276 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 444566766666643222 2334678888887 5544433 445566666777777777776655 7765333
Q ss_pred --hhhhCCCCchHHHH-----HHHHHHHHHHH-HHhHhhhHHHHHHHHHHHhh
Q 024723 114 --NILLSLEKPTWLIV-----MANFFVVVHVI-GSYQIYAMPVFDMIETLLVK 158 (263)
Q Consensus 114 --~il~nl~~~~~~~~-----~~~~~~~i~~~-~s~pl~~~p~~~~~~~~~~~ 158 (263)
+....+........ ...++..+..+ ..--.+.++....+.+.+.+
T Consensus 277 p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~ 329 (442)
T TIGR00800 277 PLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPK 329 (442)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcC
Confidence 33333332111110 11122222222 34555567777777776643
No 52
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=91.65 E-value=3.7 Score=36.25 Aligned_cols=116 Identities=13% Similarity=0.233 Sum_probs=80.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh----
Q 024723 38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED---- 113 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~---- 113 (263)
-+.++.++..+.....+.|.+-....-+...+ +||++.+ |....+.....++|...-...-..||.+..+
T Consensus 170 ~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~~--k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~ 243 (320)
T PF03845_consen 170 LESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKLK--KSLLIAILISGLFLLFIIFITIGVFGPELAKKLTY 243 (320)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceec
Confidence 35667788888888888898887777788888 7776654 8888888888888888877777888854322
Q ss_pred h---hhhCCCCchH---HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh
Q 024723 114 N---ILLSLEKPTW---LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 159 (263)
Q Consensus 114 ~---il~nl~~~~~---~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 159 (263)
+ ..+..+-++. ...+....-....+...-+..+...+.+.+.++.+
T Consensus 244 P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 244 PVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 1122221211 22334444566777777788888889999888654
No 53
>PRK10484 putative transporter; Provisional
Probab=90.47 E-value=16 Score=34.71 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=18.3
Q ss_pred CCCCCCCCcchhhhHHHHHHHH---HHhhhhhhhhhccc
Q 024723 74 EKPSKGPMWRGVVVAYIVVALC---YFPVALIGYWMFGN 109 (263)
Q Consensus 74 ~~p~~~~~~~~~~~s~~~~~i~---Y~~~g~~gy~~fG~ 109 (263)
||+++-+ |...++.....+. ....|..++..|++
T Consensus 271 k~~k~a~--~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~ 307 (523)
T PRK10484 271 KNLAEGQ--KGALLAAFFKLLGPLILVLPGIIAFHLYGD 307 (523)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5544333 6655554333323 33557777877766
No 54
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=89.82 E-value=19 Score=34.37 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=103.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhh-hhhhh-hccc-----
Q 024723 37 TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA-LIGYW-MFGN----- 109 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g-~~gy~-~fG~----- 109 (263)
..+..+.++...+-+..|+|.|...+----.|- +||+|. ..++++-.+-=..++|++.- +.|.. .|.|
T Consensus 228 ~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K~-iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~ 302 (541)
T COG0833 228 AFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRKS-IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLG 302 (541)
T ss_pred CCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchhh-hHHHHHHHHHHHHHHHHHHHHHheEEccCCCccccc
Confidence 346678899999999999999988776666666 899664 55777766666666776443 22332 3333
Q ss_pred -----cchhhhhhCCCC--chHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHHHHHHH
Q 024723 110 -----KVEDNILLSLEK--PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRFVVRNL 175 (263)
Q Consensus 110 -----~~~~~il~nl~~--~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~ 175 (263)
..++|....+++ -.....+.|...+.+++.+--=.++...+.+..+-..+. .+++..+..-+.-+.
T Consensus 303 ~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~ 382 (541)
T COG0833 303 NSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTL 382 (541)
T ss_pred CCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHH
Confidence 111232222221 123456778888888887777777888888877654321 012233333333333
Q ss_pred HHHHHHHHHhhcCC---hhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723 176 YVASTMFIGITFPF---FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 219 (263)
Q Consensus 176 ~v~~~~~vA~~ip~---~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~ 219 (263)
...+..+++...+. ++-++++.|-. .+++.+-=++.|++.||
T Consensus 383 ~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 383 LFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33333334333332 45566666532 35666777788887753
No 55
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=89.54 E-value=18 Score=33.76 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=94.1
Q ss_pred CCCcHHHHHHHHHHHHHHhcCc-cchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc-hhhh
Q 024723 38 AAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNI 115 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-~~~i 115 (263)
.+.++.++..+++...=.+..- +......+-+ |+|+.++.-.....+......+-.+.|...-.+-|+.. ..+.
T Consensus 188 ~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~ 263 (442)
T COG1457 188 GPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADV 263 (442)
T ss_pred CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 4667777777776655444333 3456666666 33332121123335556667777888888888888766 3333
Q ss_pred hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHh----hcCChh
Q 024723 116 LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGI----TFPFFG 191 (263)
Q Consensus 116 l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~----~ip~~~ 191 (263)
...+.. +...+.+...+....+--.++++..-.+.+...+- ++..+.++..+. ...++|. +..+++
T Consensus 264 ~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~ 333 (442)
T COG1457 264 MLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFE 333 (442)
T ss_pred HHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 333332 55667777788888888888888888877776532 122333332221 2223333 355677
Q ss_pred HHHHhhhhhhhhhHHHhHhHHHHHH
Q 024723 192 GLLGFFGGFAFAPTTYFLPCIIWLA 216 (263)
Q Consensus 192 ~v~~lvGs~~~~~l~~i~P~l~~l~ 216 (263)
.++.++|+.........+=-.+-.|
T Consensus 334 ~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 334 NFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777666554444444433333
No 56
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=89.41 E-value=13 Score=34.32 Aligned_cols=56 Identities=20% Similarity=0.102 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 165 TRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 165 ~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
.+.+|...|......+..+.+.+-+.+.++.+.+.+.+..+-+..+++..+..+++
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 45677888877777766666666699999999999999888888888888777664
No 57
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=87.35 E-value=26 Score=33.05 Aligned_cols=143 Identities=14% Similarity=0.091 Sum_probs=68.6
Q ss_pred cchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHH----HHhhhhhhhhhccccchh--hhhhCCCCchHHHHHHHHHH
Q 024723 60 NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALC----YFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFV 133 (263)
Q Consensus 60 ~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~----Y~~~g~~gy~~fG~~~~~--~il~nl~~~~~~~~~~~~~~ 133 (263)
-|.|..-+.- |+|+.-. +.=.++..+.+.+ =...+...+..||+...+ +++.+++++.....++.+.+
T Consensus 258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~ 331 (497)
T COG1953 258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTF 331 (497)
T ss_pred cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHH
Confidence 3677777765 4443322 1112334444444 444445668899998554 78888885433221233333
Q ss_pred HHHHHH-HhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHh
Q 024723 134 VVHVIG-SYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLP 210 (263)
Q Consensus 134 ~i~~~~-s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P 210 (263)
++..+. ...-+..+....+.+++.+..+.+ +-..+...+.+.++.+-+=..-.++..+++..|++.+.....++=
T Consensus 332 ~iati~~Ni~aN~vsp~~D~s~l~Pk~in~k--rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmia 407 (497)
T COG1953 332 AVATISTNIAANIVSPGYDLSALFPKYINIK--RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIA 407 (497)
T ss_pred HHHHHhhhHHhccCChHHHHHHhcccccchh--hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 222333445555555554432211 111122223333333433333345667777777777765555443
No 58
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=82.21 E-value=47 Score=31.61 Aligned_cols=129 Identities=9% Similarity=0.123 Sum_probs=61.3
Q ss_pred ccCCCCcccccccCCC-CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHH----
Q 024723 23 KGVQPDVAYGYKAKTA-AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF---- 97 (263)
Q Consensus 23 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~---- 97 (263)
+|..++..+-.+.+.. -.+..-...|++-..|+.+.-.-..-.+.+- +|++.+..+...+.......+-+
T Consensus 228 ~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy-----~~~~~n~~~~a~~v~~~~~~~sllag~ 302 (523)
T PF00209_consen 228 PGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSY-----NKFKNNIFRDALIVAFINTLVSLLAGL 302 (523)
T ss_dssp EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTT-----S-TTS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred CCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCc-----CCCCccccccceEEEcCchhhhHhHHH
Confidence 3545555543332322 2334455789999999998665555566664 23333332333322222222222
Q ss_pred -hhhhhhhhhccc--c--------------chhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Q 024723 98 -PVALIGYWMFGN--K--------------VEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 156 (263)
Q Consensus 98 -~~g~~gy~~fG~--~--------------~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 156 (263)
++++.|+.+... + +-+.++.++|.++....+-..++.+..+.|.-....+....+++.+
T Consensus 303 ~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~ 378 (523)
T PF00209_consen 303 VIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEF 378 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecC
Confidence 223444443311 1 1123556667655555444555555555555555555555555443
No 59
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=81.86 E-value=50 Score=31.63 Aligned_cols=173 Identities=10% Similarity=0.062 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCC
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~ 120 (263)
.-..+..++-.-++.+.|-..-..+-.|- +|+++. -.|....+..+..++=.++-+.-.+.-+++...-.-.+++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g 324 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEET----KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLG 324 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHh----cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCC
Confidence 55566666777777777777888888888 888765 3477777777776666655555556666433222222222
Q ss_pred C-----------chHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhcc----------CCccchhHHHHHHHHHHH
Q 024723 121 K-----------PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLN----------FSPTRLLRFVVRNLYVAS 179 (263)
Q Consensus 121 ~-----------~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~r~~~v~~ 179 (263)
+ +... .....+..+..++.---......+.....- ++.. +++......++....+..
T Consensus 325 ~p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afa-RDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s 402 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFA-RDGGLPFSKYLAKVNPQTKVPLNAVLLSCIIS 402 (550)
T ss_pred ChHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhh-ccCCCCCcceeeecCCCCCCcHHHHHHHHHHH
Confidence 1 1111 112222222222222222222222222221 1110 011112223333333444
Q ss_pred HHHHHhhcCChhHHHHhh-hhhhhhhHHHhHhHHHHHHHhCC
Q 024723 180 TMFIGITFPFFGGLLGFF-GGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 180 ~~~vA~~ip~~~~v~~lv-Gs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
..+.-+..++-..+-++. .+.....++|..|..+-+...|+
T Consensus 403 ~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 403 ILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence 444445566655555554 34556679999999998777664
No 60
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=80.48 E-value=52 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=13.4
Q ss_pred chhhhHHHHH---HHHHHhhhhhhhhhccc
Q 024723 83 RGVVVAYIVV---ALCYFPVALIGYWMFGN 109 (263)
Q Consensus 83 ~~~~~s~~~~---~i~Y~~~g~~gy~~fG~ 109 (263)
|...++.... .....++|+.|...+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 294 (487)
T TIGR02121 265 KARRIGMSWMILSLLGAIAVGLTGIAYFNK 294 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555443322 23345566666665543
No 61
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=78.30 E-value=62 Score=30.61 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=10.3
Q ss_pred HHHHhhhhhhhhhccc
Q 024723 94 LCYFPVALIGYWMFGN 109 (263)
Q Consensus 94 i~Y~~~g~~gy~~fG~ 109 (263)
..-..+|+.|+..+.+
T Consensus 283 ~~~~~ig~~~~~~~~~ 298 (502)
T PRK15419 283 AGAVAVGFFGIAYFNE 298 (502)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455677888777653
No 62
>PRK11375 allantoin permease; Provisional
Probab=77.81 E-value=64 Score=30.49 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhc-CccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh----hhhccccchh--h
Q 024723 42 VFNFFSALGDVAFAYA-GHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG----YWMFGNKVED--N 114 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g----y~~fG~~~~~--~ 114 (263)
...+..++...+=++. ...+.|..-+-. |+|++-. +.-.+++.+...+...+|+.. ...+|+...| +
T Consensus 226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~ 299 (484)
T PRK11375 226 GFLFLVVINAVVAVWAAPAVSASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLD 299 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHH
Confidence 3445555433333444 334677887776 5554332 333344444444443333332 3466654433 3
Q ss_pred hhhCCCCchHHHHHHHHHHHHHHHHHh-HhhhHHHHHHHHHHHhhhccCCccchhHH-HHH--HHHHHHHHHHHhhcCCh
Q 024723 115 ILLSLEKPTWLIVMANFFVVVHVIGSY-QIYAMPVFDMIETLLVKKLNFSPTRLLRF-VVR--NLYVASTMFIGITFPFF 190 (263)
Q Consensus 115 il~nl~~~~~~~~~~~~~~~i~~~~s~-pl~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~r--~~~v~~~~~vA~~ip~~ 190 (263)
+..+.. +.....++-+...+....+- .-+.++.-..+.+.+.++.+ .+|- .+. +..+...+.+-.....|
T Consensus 300 i~~~~~-~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~-----~~~~~~i~~iig~~~~pw~~~~~~~~f 373 (484)
T PRK11375 300 IVQRWD-SLFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLT-----YKNGVLIASIISLLICPWKLMENQDSI 373 (484)
T ss_pred HHHHhc-chHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccc-----hhhHHHHHHHHHHHhccHHHhccHHHH
Confidence 333332 22333344555566555553 45778888888887754321 1221 111 11111111111111227
Q ss_pred hHHHHhhhhhhhhhHHHhHh
Q 024723 191 GGLLGFFGGFAFAPTTYFLP 210 (263)
Q Consensus 191 ~~v~~lvGs~~~~~l~~i~P 210 (263)
.+++++.|++.+.....++=
T Consensus 374 ~~FL~~lg~~l~Pi~gImi~ 393 (484)
T PRK11375 374 YLFLDIIGGMLGPVIGVMMA 393 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777776655544443
No 63
>PRK12488 acetate permease; Provisional
Probab=76.12 E-value=76 Score=30.48 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723 177 VASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 224 (263)
Q Consensus 177 v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~ 224 (263)
-....++|...|+.+ +..+++-..+......+|. +.+.++|+|.++
T Consensus 413 gv~a~~~a~~~~~~~-i~~l~~~~~~~~a~~~~p~-lllgl~wkr~t~ 458 (549)
T PRK12488 413 GLLAVVLGLMFESQN-IAFLSGLVLAIAASVNFPV-LFLSMFWKGLTT 458 (549)
T ss_pred HHHHHHHHHccCCCc-HHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCH
Confidence 344556677667532 3333332223334555665 335556665444
No 64
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=74.83 E-value=74 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=15.5
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh
Q 024723 74 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYW 105 (263)
Q Consensus 74 ~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~ 105 (263)
||+++ .+|...++..+...++......|..
T Consensus 263 k~~~~--a~~~~~~~~~~~~~~~~~~~~~G~~ 292 (471)
T TIGR02119 263 KDSKA--MHRAMIIGTIVVGIIMLGMHLAGVL 292 (471)
T ss_pred CCHHH--HhhhHhHHHHHHHHHHHHHHHHHHh
Confidence 44443 3366666655555555544454533
No 65
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=73.36 E-value=89 Score=30.01 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCC--hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723 177 VASTMFIGITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 224 (263)
Q Consensus 177 v~~~~~vA~~ip~--~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~ 224 (263)
.+...++|...|+ +..++++..+... +-.+|. +.+.++|+|.++
T Consensus 413 g~ia~~~a~~~~~~~i~~l~~~~~~~~a---~~~~p~-lllgl~Wkr~n~ 458 (549)
T TIGR02711 413 GVIAIGLGILFENQNIAFMVGLAFSIAA---SCNFPI-ILLSMYWSKLTT 458 (549)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHH-HHHHHhcCCCCH
Confidence 3445566766564 3334333333332 235566 446667776554
No 66
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=71.21 E-value=1e+02 Score=29.65 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723 179 STMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 224 (263)
Q Consensus 179 ~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~ 224 (263)
...++|...|+ .+..+.....+....-++|+++ +.++++|.++
T Consensus 426 ~~~~~a~~~~~--~i~~l~~~~~~~~~~~~~~~~l-lgl~w~r~~~ 468 (552)
T TIGR03648 426 IAGYFGLNPPG--FIAQVVAFAFGLAAASFFPALV-LGIFWKRMNR 468 (552)
T ss_pred HHHHHHHcccc--HHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCcH
Confidence 33445554443 3333333222223345566533 4555665443
No 67
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=68.90 E-value=93 Score=28.36 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=52.1
Q ss_pred chhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHHHHHHHHHHHHHHHHH
Q 024723 61 VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGS 140 (263)
Q Consensus 61 ~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~~~~~~~~~~i~~~~s 140 (263)
..+...+.. |+|++-. +...++..+...+-..+|.....+.++.-..++..... ....+-++..+....+
T Consensus 191 ~~~DysRy~----k~~~~~~--~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~ 260 (386)
T TIGR02358 191 LIADYTRFA----RNPRHVF--LGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTT 260 (386)
T ss_pred Hccchhhhc----CCCccee--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHH
Confidence 366777765 4443322 45556777777777788877776666542223332221 1123445556666667
Q ss_pred hHhhhHHHHHHHHHHHh
Q 024723 141 YQIYAMPVFDMIETLLV 157 (263)
Q Consensus 141 ~pl~~~p~~~~~~~~~~ 157 (263)
-..+.++.-..+.+.+.
T Consensus 261 n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 261 TFMDIYSAAISTGNLLP 277 (386)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888888888774
No 68
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=68.05 E-value=20 Score=29.50 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=47.9
Q ss_pred hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC----------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024723 190 FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR----------KYSLSWCINWICIVLGLCLMILSPIGGLRQIIL 254 (263)
Q Consensus 190 ~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~----------~~~~~~~~~~~ii~~g~~~~v~gt~~si~~ii~ 254 (263)
++...-+.|++.+.-+..++|+...+...+++ .+|.+.....+.-.+|++..+.+...|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566778999999999999999999997763 123344566667777777777777777776654
No 69
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=67.29 E-value=1.2e+02 Score=28.84 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCcc-chhhhhhcCCCCCCCCCCC--CCcchhhhHHHHHHHHHHhhhhhhhhhccc
Q 024723 48 ALGDVAFAYAGHN-VVLEIQATIPSTPEKPSKG--PMWRGVVVAYIVVALCYFPVALIGYWMFGN 109 (263)
Q Consensus 48 ~~~~~~faf~~~~-~~~~i~~~m~~~~~~p~~~--~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 109 (263)
..+...+.+..++ ..|...+ . +++++. +.++.-......+...-.++|..+...+.+
T Consensus 240 ~~~~~~l~~~~~~~i~~r~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 299 (493)
T COG0591 240 AWGTLFLGYFGQPHILPRFMA-A----KSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPL 299 (493)
T ss_pred HHHHHHhhhhcCchhhhhhhh-h----ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444445555555 4566666 3 334332 222332233333443335566666555544
No 70
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=65.72 E-value=89 Score=28.85 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhcC-ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723 169 RFVVRNLYVASTMFIGITFP-FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 169 ~~~~r~~~v~~~~~vA~~ip-~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~ 220 (263)
|..........+.+.+...| -+....+..|++.....+-++|.+++++-++.
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~ 376 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKL 376 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666677778888888 57888888999999999999999999887544
No 71
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=59.55 E-value=18 Score=30.72 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCChhHHHHhh---------hhhhhhhHHHhHhHHHHHHHhCCC--CC---chhHHHHHHHHHHHHH
Q 024723 174 NLYVASTMFIGITFPFFGGLLGFF---------GGFAFAPTTYFLPCIIWLAIYKPR--KY---SLSWCINWICIVLGLC 239 (263)
Q Consensus 174 ~~~v~~~~~vA~~ip~~~~v~~lv---------Gs~~~~~l~~i~P~l~~l~~~~~~--~~---~~~~~~~~~ii~~g~~ 239 (263)
....+.++++|..++.++.++.++ ||.+|.-++++= |..+.+.. .. ..+.|+.|+++++|++
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 344555666777777666666554 777776666654 33332221 11 1246888999999999
Q ss_pred HHHHHHHH--HHHHHHHhc
Q 024723 240 LMILSPIG--GLRQIILQA 256 (263)
Q Consensus 240 ~~v~gt~~--si~~ii~~~ 256 (263)
+..-|++. .++.+-+.+
T Consensus 236 l~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHHhHHHHhhHHHHH
Confidence 99888865 555555554
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=55.29 E-value=1.7e+02 Score=26.70 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=17.5
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhh---hhhhhhhcc
Q 024723 74 EKPSKGPMWRGVVVAYIVVALCYFPV---ALIGYWMFG 108 (263)
Q Consensus 74 ~~p~~~~~~~~~~~s~~~~~i~Y~~~---g~~gy~~fG 108 (263)
||+++ .||...++.....+++... |+.++..|.
T Consensus 230 ks~~~--~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 230 KSAKH--AKKGCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred CCHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 3377776655555555544 455544453
No 73
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=53.51 E-value=2e+02 Score=27.02 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=16.5
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723 74 EKPSKGPMWRGVVVAYIVVALCYFPVALIG 103 (263)
Q Consensus 74 ~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g 103 (263)
||+++-+ |...++......++......|
T Consensus 264 ks~~~a~--~~~~~~~~~~~~~~~~~~~~G 291 (483)
T PRK09442 264 KDSKALH--RGIIIGTIVVGFLMFGMHLAG 291 (483)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 777776666666666555555
No 74
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=50.34 E-value=2.9e+02 Score=28.04 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhh-hhhhh--------hccccch
Q 024723 42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA-LIGYW--------MFGNKVE 112 (263)
Q Consensus 42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g-~~gy~--------~fG~~~~ 112 (263)
.+.+..-+|++.=|-+|...=-+--.++ |||+|. .......+.+....+|+.-. ++|-- -||+.+.
T Consensus 409 ~tSFtlLvgIfFPsVTGImaGSNrSGDL----kDaQkS-IPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~ 483 (1075)
T KOG2082|consen 409 TTSFTLLVGIFFPSVTGIMAGSNRSGDL----KDAQKS-IPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVG 483 (1075)
T ss_pred hhhHHHHHHhhccccceeeecCCCCccc----cchhhc-CchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhcc
Confidence 3567777788777777766666666677 888664 33444455555555665433 33322 3555555
Q ss_pred hhhh-hCC--CCchHHHHHHHH----HHHHHHHHHhHhhhHHH-HHHHHHHHhhhccCC-ccchhHHHHHHHHHHHHHHH
Q 024723 113 DNIL-LSL--EKPTWLIVMANF----FVVVHVIGSYQIYAMPV-FDMIETLLVKKLNFS-PTRLLRFVVRNLYVASTMFI 183 (263)
Q Consensus 113 ~~il-~nl--~~~~~~~~~~~~----~~~i~~~~s~pl~~~p~-~~~~~~~~~~~~~~~-~~~~~~~~~r~~~v~~~~~v 183 (263)
++.. .++ |. .|...+..+ ...++.+++-|=.+..+ ++.+-..+..-.+.+ .....+- +++.+..+-.
T Consensus 484 g~lVva~laWPs-PwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~a---LlLT~~Ice~ 559 (1075)
T KOG2082|consen 484 GNLVVATLAWPS-PWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWA---LLLTAIICEC 559 (1075)
T ss_pred CcEEEEEecCCC-ceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHH---HHHHHHHHHh
Confidence 5432 223 43 354444333 34667777777666543 333333332211111 1111121 2223334445
Q ss_pred HhhcCChhHHHHhhhhhhhhhHHHhHhHHH---HHHHhCCCCCchhHHHHHHHHHHHH
Q 024723 184 GITFPFFGGLLGFFGGFAFAPTTYFLPCII---WLAIYKPRKYSLSWCINWICIVLGL 238 (263)
Q Consensus 184 A~~ip~~~~v~~lvGs~~~~~l~~i~P~l~---~l~~~~~~~~~~~~~~~~~ii~~g~ 238 (263)
++.+-+++.+-.++.=+ ..+||.+=-+- .--++-|+++-+=|..+|.+..+|.
T Consensus 560 gILigslD~iApilsmF--FLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~ 615 (1075)
T KOG2082|consen 560 GILIGSLDLIAPILSMF--FLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGA 615 (1075)
T ss_pred hheeechhHHHHHHHHH--HHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHH
Confidence 56677776666555333 24555544332 2233333322122356666666653
No 75
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=48.37 E-value=44 Score=23.61 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhh-hHHHHHHHHHHhhhhhhhhhccccc
Q 024723 47 SALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKV 111 (263)
Q Consensus 47 ~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~s~~~~~i~Y~~~g~~gy~~fG~~~ 111 (263)
...|+....-.|...+.+..++= .+|.+..+ |++. +++... +-.+.|++.|.+||.-.
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~----s~~~~~~w-RalSii~FIlG--~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNT----SNVTDYVW-RALSVTCFIVG--AVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccC----CCCcchhH-HHHHHHHHHHH--HHHHHHHHHHHHhcccC
Confidence 34566666777777777777753 36666653 4444 333333 55678899999999433
No 76
>PRK09395 actP acetate permease; Provisional
Probab=45.11 E-value=2.9e+02 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCC--hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723 178 ASTMFIGITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 224 (263)
Q Consensus 178 ~~~~~vA~~ip~--~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~ 224 (263)
+...++|...|+ ....+++.. +......+|.++ +.++++|.++
T Consensus 416 i~a~~~a~~~~~~~i~~~~~~~~---~~~~~~~~p~ll-lglfwkr~~~ 460 (551)
T PRK09395 416 VVAIILGILFEKQNIAFMVGLAF---AIAASANFPVLL-LSMYWKGLTT 460 (551)
T ss_pred HHHHHHHHccCCCcHHHHHHHHH---HHHHHHHHHHHH-HHHhcCCCch
Confidence 344455655443 333333332 222345667653 4555665444
No 77
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=43.03 E-value=2.6e+02 Score=25.51 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=61.3
Q ss_pred cchhhhhh-cCCCCCCCCCCCCCcchhhhHH---HHHHHHHHhhhhhhhhhcc---cc-chhhhhhCCCC---chHHHHH
Q 024723 60 NVVLEIQA-TIPSTPEKPSKGPMWRGVVVAY---IVVALCYFPVALIGYWMFG---NK-VEDNILLSLEK---PTWLIVM 128 (263)
Q Consensus 60 ~~~~~i~~-~m~~~~~~p~~~~~~~~~~~s~---~~~~i~Y~~~g~~gy~~fG---~~-~~~~il~nl~~---~~~~~~~ 128 (263)
...-.+.+ |+ +||+|. .++....+. .....+|.-.+..|-..-+ +. ..+.++.+..+ ++.-..+
T Consensus 198 iiv~~i~~~g~----~~~~~~-~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~l 272 (378)
T TIGR00796 198 IVVNAIRSRGV----TKPKKI-TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFL 272 (378)
T ss_pred HHHHHHHHhCC----CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHH
Confidence 44455555 66 777654 224444333 3445567666666654432 11 12233333321 1222333
Q ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHh
Q 024723 129 ANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYF 208 (263)
Q Consensus 129 ~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i 208 (263)
..+...+..+++---......|.+++... + ......-....+.+.+++.. .++.++++ +...+.++
T Consensus 273 l~i~v~lACLtT~iGli~~~a~~f~~~~~-----k---~~y~~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~ 338 (378)
T TIGR00796 273 LGLIITLACLTTAVGLTTACSEYFHKLVP-----K---LSYKTWVIVFTLFSFIVANL--GLTQIISI----SIPVLMII 338 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C---CCHHHHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHH
Confidence 34444444444433333444444444321 1 11112222223333444432 67777764 45667777
Q ss_pred HhHHHH
Q 024723 209 LPCIIW 214 (263)
Q Consensus 209 ~P~l~~ 214 (263)
.|...-
T Consensus 339 YP~~i~ 344 (378)
T TIGR00796 339 YPLAIV 344 (378)
T ss_pred HHHHHH
Confidence 776544
No 78
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.46 E-value=4.9e+02 Score=28.15 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhhhhc
Q 024723 88 AYIVVALCYFPVALIGYWMF 107 (263)
Q Consensus 88 s~~~~~i~Y~~~g~~gy~~f 107 (263)
.+++...+|++++++.|-.-
T Consensus 28 IlLlllAlfL~lALiSYsPs 47 (1355)
T PRK10263 28 ILIVLFAVWLMAALLSFNPS 47 (1355)
T ss_pred HHHHHHHHHHHHHHHhCCcc
Confidence 33455667899999888763
No 79
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=40.23 E-value=33 Score=20.90 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhccc
Q 024723 84 GVVVAYIVVALCYFPVALIGYWMFGN 109 (263)
Q Consensus 84 ~~~~s~~~~~i~Y~~~g~~gy~~fG~ 109 (263)
+...++.+..++-.++|..-|.+||.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCC
Confidence 34456667777777788888889985
No 80
>CHL00020 psbN photosystem II protein N
Probab=39.27 E-value=29 Score=21.11 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhcccc
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNK 110 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~ 110 (263)
.+...++.+..++-.++|..-|.+||..
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 3455666677777777777778899863
No 81
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=38.81 E-value=2.9e+02 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=27.5
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCC
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~ 120 (263)
+++.++...+.-.-..+...||.......++|+..++.
T Consensus 48 ~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l~ 85 (340)
T PF12794_consen 48 RALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVALG 85 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Confidence 56667888888888888899998887656556554443
No 82
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=38.39 E-value=1.2e+02 Score=22.07 Aligned_cols=21 Identities=10% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024723 227 WCINWICIVLGLCLMILSPIG 247 (263)
Q Consensus 227 ~~~~~~ii~~g~~~~v~gt~~ 247 (263)
.++...++++|++.++...|.
T Consensus 74 ~~~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 74 FSWTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 366667888888887776654
No 83
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=37.71 E-value=34 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=20.4
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhcccc
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNK 110 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~ 110 (263)
.+...++.+..++-.++|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4556667777777777777778899863
No 84
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=37.57 E-value=3e+02 Score=24.58 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh
Q 024723 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK 158 (263)
Q Consensus 123 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 158 (263)
++...+--+......+.+...........+++.++.
T Consensus 252 ~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~ 287 (358)
T PF01566_consen 252 PWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGW 287 (358)
T ss_pred hHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcC
Confidence 455555555555555555555555556666666644
No 85
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=37.56 E-value=48 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhh-hHHHHHHHHHHhhhhhhhhhccccch
Q 024723 46 FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKVE 112 (263)
Q Consensus 46 ~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~s~~~~~i~Y~~~g~~gy~~fG~~~~ 112 (263)
....|++..+..|...+.+..++ ++|.+..+ |++. +++.+ -+-++.|.+-|-+||..+.
T Consensus 14 vli~GiiLL~~aCIfAfidfsK~-----~~~~~~~w-RalSii~FI~--giil~lG~~i~s~ygr~C~ 73 (92)
T PF05767_consen 14 VLIGGIILLIAACIFAFIDFSKN-----TKPTDYTW-RALSIICFIL--GIILTLGIVIFSMYGRYCR 73 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhccC-----CCCchhHH-HHHHHHHHHH--HHHHHHHHHHHHHHhhhcC
Confidence 34567888888888888888886 56776653 4444 33333 3557788888999988764
No 86
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=35.86 E-value=1.4e+02 Score=23.64 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=46.9
Q ss_pred cchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHH
Q 024723 82 WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 148 (263)
Q Consensus 82 ~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 148 (263)
++.+-+..-...+.-.++|+..-..+.++. ++.+=++-.+|.-....+++.++-+..+....+|.
T Consensus 47 ~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 47 MKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 366667777777777888886666665553 33222234478888899999999999999998886
No 87
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=32.05 E-value=1.8e+02 Score=20.30 Aligned_cols=51 Identities=12% Similarity=-0.095 Sum_probs=30.6
Q ss_pred ChhHHHHhhhhhhhhhHHHhHhHHHHHH--HhCCCCCchhHHHHHHHHHHHHHH
Q 024723 189 FFGGLLGFFGGFAFAPTTYFLPCIIWLA--IYKPRKYSLSWCINWICIVLGLCL 240 (263)
Q Consensus 189 ~~~~v~~lvGs~~~~~l~~i~P~l~~l~--~~~~~~~~~~~~~~~~ii~~g~~~ 240 (263)
+.-.+...-|++++ .--.++|.+.|.. .+|..+++.|+...+.++.+..-+
T Consensus 13 ~~l~vl~~y~~l~~-~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPG 65 (81)
T PF10716_consen 13 DTLLVLLAYAALAG-LYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPG 65 (81)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444445555554 4666778776544 455566778888777666655433
No 88
>PHA02898 virion envelope protein; Provisional
Probab=31.98 E-value=66 Score=22.80 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhh-hHHHHHHHHHHhhhhhhhhhccccchhhh
Q 024723 46 FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKVEDNI 115 (263)
Q Consensus 46 ~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i 115 (263)
....|++...-.|...+.+..++ ++|++.. +|++. +++.. -+-++.|.+-|-+||....++.
T Consensus 14 vli~GIiLL~~ACIfAfidfSK~-----~~~~~~~-wRalSii~FIl--givl~lG~~ifs~y~r~C~~~~ 76 (92)
T PHA02898 14 VVAFGIILLIVACICAYIELSKS-----EKPADSA-LRSISIISFIL--AIILILGIIFFKGYNMFCGGNT 76 (92)
T ss_pred HHHHHHHHHHHHHHHheehhhcC-----CCcchhH-HHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCc
Confidence 34567777777777777777776 5576554 34444 33333 3567888888999997666543
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=30.84 E-value=4.8e+02 Score=24.90 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=84.6
Q ss_pred CcHHHHHHHHHHHHHHhcCcc-chhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhh---------cc-
Q 024723 40 GTVFNFFSALGDVAFAYAGHN-VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM---------FG- 108 (263)
Q Consensus 40 ~~~~~~~~~~~~~~faf~~~~-~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~---------fG- 108 (263)
.+..+++...-..+++..+-+ .+...+.. |+-+.-|+.+.|+..+..++|...-..|+.+ ++
T Consensus 234 ~~~i~~isl~~aLm~GTAgLPHil~RFfTv-------p~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p 306 (529)
T COG4147 234 KDPIDFISLGFALMVGTAGLPHILMRFFTV-------PDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKP 306 (529)
T ss_pred cCHHHHHHHHHHHHHccCCCCeEEEEEEec-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 444555554444555555443 23334443 3333334899999999999999888877653 21
Q ss_pred ----------ccchhhhhhC--C---------CCchHHHH---HHHHHHHHHHHHHhHhhhHH-H-HHHHHHHHhhhccC
Q 024723 109 ----------NKVEDNILLS--L---------EKPTWLIV---MANFFVVVHVIGSYQIYAMP-V-FDMIETLLVKKLNF 162 (263)
Q Consensus 109 ----------~~~~~~il~n--l---------~~~~~~~~---~~~~~~~i~~~~s~pl~~~p-~-~~~~~~~~~~~~~~ 162 (263)
|...+-+..+ . .++++..- ..-++..++......+.... . +|.-.+.++++..+
T Consensus 307 ~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase 386 (529)
T COG4147 307 AWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATE 386 (529)
T ss_pred chhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCc
Confidence 2222211111 1 11233221 12222233333333333222 2 33333444433222
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCC
Q 024723 163 SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKY 223 (263)
Q Consensus 163 ~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~ 223 (263)
+++....-+...+..+...++++.-|+ .+..++|--++..-+-.+|.+.+=. +|+|..
T Consensus 387 ~~~v~vaRi~~v~~~vva~~lgi~~~g--nVaflVa~AF~lAaSa~fPvivlgl-fWKr~n 444 (529)
T COG4147 387 KKEVRVARIAVVILGVVAILLGILPPG--NVAFLVALAFALAASANFPVIVLGL-FWKRLN 444 (529)
T ss_pred cceehhHHHHHHHHHHHHHHheecCCc--cHHHHHHHHHHHHHHcccchhhHHH-HHhhcc
Confidence 211111112222333445566777776 6777777666777777889877533 344433
No 90
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=30.18 E-value=1e+02 Score=24.26 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHhh
Q 024723 170 FVVRNLYVASTMFIGITFPFFGGLLGFF 197 (263)
Q Consensus 170 ~~~r~~~v~~~~~vA~~ip~~~~v~~lv 197 (263)
.....+......+....+|.++.+++..
T Consensus 128 l~~~~~~~~~l~~~i~~~P~~~~~f~~~ 155 (182)
T PF00689_consen 128 LLIAILISIALQILIVYVPGLNRIFGTA 155 (182)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHST--
T ss_pred HHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 3333444444455567778777776665
No 91
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=29.88 E-value=1.6e+02 Score=23.24 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=35.6
Q ss_pred hhhhhhhhhHHHhHhHHHHHHHhCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc
Q 024723 196 FFGGFAFAPTTYFLPCIIWLAIYKP-RKYSLSWCINWICIVLGLCLMILSPIGGLRQII-LQAKD 258 (263)
Q Consensus 196 lvGs~~~~~l~~i~P~l~~l~~~~~-~~~~~~~~~~~~ii~~g~~~~v~gt~~si~~ii-~~~~~ 258 (263)
..|+-.+....|..|-+.+..-.+. +.....+---.+.+++|+..+++++..+-+... +++++
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~ 98 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNKKLNS 98 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666778888888776531111 110101122234678888888888887666655 44444
No 92
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=29.58 E-value=4.2e+02 Score=23.89 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCC
Q 024723 178 ASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKY 223 (263)
Q Consensus 178 ~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~ 223 (263)
....+++...|+.+ +..+..-..+....-.+|+++. .++|||.+
T Consensus 352 ~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~-gl~wkr~t 395 (406)
T PF00474_consen 352 IIAILLALFFPDSG-IIDLILFAFGILAAPFFPPLLL-GLYWKRAT 395 (406)
T ss_dssp HHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHHHH-HHH-TT--
T ss_pred HhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHHH-hhccCCCC
Confidence 34555666667653 4444443333333334454432 33455433
No 93
>PHA03048 IMV membrane protein; Provisional
Probab=29.46 E-value=1.1e+02 Score=21.84 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh
Q 024723 47 SALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED 113 (263)
Q Consensus 47 ~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~ 113 (263)
...|++..+-.|...+.+..++ +|+.. .+|++.+ ..+..-+-+++|.+-|.+||....+
T Consensus 15 li~GIiLL~~aCIfAfidfsK~------k~~~~-~wRalsi-i~FIlgivl~lG~~ifsmy~r~C~~ 73 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKN------KATVT-VWRALSG-IAFVLGIVMTIGMLIYSMWGRYCTP 73 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcC------CCcch-hHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3456666666676666777663 35444 3355442 2233335678899999999976654
No 94
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.27 E-value=2.2e+02 Score=23.88 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=46.0
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHH
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 148 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 148 (263)
+.+-...-...+.-.++|+..-..+-|+.++++..-++-.+|.-....+++.++.+..+....+|.
T Consensus 58 k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 58 KLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556666667777777777655555555554444333345578888888999999999998877774
No 95
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=24.90 E-value=3.9e+02 Score=23.54 Aligned_cols=27 Identities=4% Similarity=-0.093 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024723 230 NWICIVLGLCLMILSPIGGLRQIILQA 256 (263)
Q Consensus 230 ~~~ii~~g~~~~v~gt~~si~~ii~~~ 256 (263)
.+.+++.|+.++..|.+.+++..++..
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677778888888888888877765
No 96
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=24.68 E-value=4.1e+02 Score=22.03 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=29.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHh
Q 024723 120 EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 157 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 157 (263)
+..+....-.+++..+....+.|...+-.-..+..-+.
T Consensus 52 ~~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy 89 (215)
T TIGR00945 52 SPTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLY 89 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567788899999999999999999876666554443
No 97
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.30 E-value=7.5e+02 Score=25.00 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723 43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 104 (263)
Q Consensus 43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 104 (263)
.++-..||++.-+-+|...=-..-.|+ |+|++. ..+....+....++.|+++..+.-
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSkS-IP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGEL----KAPSKS-IPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccc----cCcccc-CCccchHHHHHHHHHHHHHHHHhc
Confidence 455566666666655555555566666 999875 458888899999999998876543
No 98
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.14 E-value=2.5e+02 Score=21.80 Aligned_cols=63 Identities=10% Similarity=0.195 Sum_probs=45.0
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCC-CCchHHHHHHHHHHHHHHHHHhHhhhHHH
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQIYAMPV 148 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 148 (263)
+.+-+..-...++-.++|+..-..+.++. ++ .|+ +...|.-....+++.++.+..+....+|.
T Consensus 41 k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~-~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 41 KILHGLLHIMALVISLVGLVAVFDYHQAN--GY-PDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55667777777777788876666665543 32 233 34468888889999999999998888884
No 99
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=24.09 E-value=24 Score=32.62 Aligned_cols=39 Identities=8% Similarity=0.034 Sum_probs=20.7
Q ss_pred chhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh
Q 024723 61 VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW 105 (263)
Q Consensus 61 ~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~ 105 (263)
+.+...+.+ |++++.. +...++.....+....+|++|..
T Consensus 220 ~~~DysRy~----~~~~~~~--~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 220 NASDYSRYA----KSDTSAW--WGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp CCHHHHTTC------HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHhhC----CCCCCcE--EEEeehhhhHHHHHHHHHHHHHH
Confidence 445777777 4333322 44556666555566666655544
No 100
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.98 E-value=42 Score=29.31 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=12.1
Q ss_pred HHHHHHHhCCCCCchh
Q 024723 211 CIIWLAIYKPRKYSLS 226 (263)
Q Consensus 211 ~l~~l~~~~~~~~~~~ 226 (263)
-++|++++++|+.+|+
T Consensus 276 iiLYiWlyrrRK~swk 291 (295)
T TIGR01478 276 IILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHhhccccc
Confidence 3678888888877775
No 101
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.80 E-value=2e+02 Score=22.40 Aligned_cols=32 Identities=3% Similarity=0.111 Sum_probs=22.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024723 219 KPRKYSLSWCINWICIVLGLCLMILSPIGGLR 250 (263)
Q Consensus 219 ~~~~~~~~~~~~~~ii~~g~~~~v~gt~~si~ 250 (263)
+.+.++.++..++.+-.+++.+.+.|.++..+
T Consensus 33 ~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 33 RNETKRSTKILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445668888888888888888877643
No 102
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=23.78 E-value=3.9e+02 Score=21.88 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhHhh
Q 024723 129 ANFFVVVHVIGSYQIY 144 (263)
Q Consensus 129 ~~~~~~i~~~~s~pl~ 144 (263)
.+.+..+|.++-.-+.
T Consensus 37 lk~l~~~h~ll~l~~~ 52 (186)
T PF07086_consen 37 LKKLILFHALLWLLMA 52 (186)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.71 E-value=1.5e+02 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024723 231 WICIVLGLCLMILSPIGGLRQIILQAK 257 (263)
Q Consensus 231 ~~ii~~g~~~~v~gt~~si~~ii~~~~ 257 (263)
...+++|++.+++|+..-+.-++++.+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777766555555443
No 104
>PTZ00370 STEVOR; Provisional
Probab=23.66 E-value=45 Score=29.13 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.3
Q ss_pred HHHHHHHhCCCCCchh
Q 024723 211 CIIWLAIYKPRKYSLS 226 (263)
Q Consensus 211 ~l~~l~~~~~~~~~~~ 226 (263)
-++|++++++|+.+|+
T Consensus 272 iilYiwlyrrRK~swk 287 (296)
T PTZ00370 272 IILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHhhcchhH
Confidence 3678888888887775
No 105
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=22.84 E-value=5.7e+02 Score=23.06 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCcc--chhhhhhcCCC------CCCCCCCCCCcchhhhHH------HHHHHHHHhhhhhhhhhcc
Q 024723 43 FNFFSALGDVAFAYAGHN--VVLEIQATIPS------TPEKPSKGPMWRGVVVAY------IVVALCYFPVALIGYWMFG 108 (263)
Q Consensus 43 ~~~~~~~~~~~faf~~~~--~~~~i~~~m~~------~~~~p~~~~~~~~~~~s~------~~~~i~Y~~~g~~gy~~fG 108 (263)
.+.+..+.+.+|+|..-. .-|++.+-+.. +|++++ +.+|.-++-+ ..+.++=....+.|.++||
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r--~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~G 222 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLR--TVSKREKILFPIVLLLLVALLIPKALPLVGMLMFG 222 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCC--CcCccchhHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 478899999999997543 34666665421 122221 1112222222 2223333345589999999
Q ss_pred ccchh-hhhhCCC
Q 024723 109 NKVED-NILLSLE 120 (263)
Q Consensus 109 ~~~~~-~il~nl~ 120 (263)
+-.++ .+.+.+.
T Consensus 223 nllrEsGv~~rl~ 235 (354)
T TIGR01109 223 NLMRESGVVERLS 235 (354)
T ss_pred HHHHHhccHHHHH
Confidence 97775 4556664
No 106
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=22.69 E-value=2.2e+02 Score=24.14 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=34.0
Q ss_pred hhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 024723 196 FFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGL 249 (263)
Q Consensus 196 lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~si 249 (263)
..|+.+|.....-.=.+.+-++..++-+....--+++..++=.+..+.|.++..
T Consensus 91 ~~G~iaGv~~liG~~~L~~RR~~~~rvR~~St~~D~f~lilLla~~~~Gl~~~~ 144 (228)
T COG2181 91 VLGGIAGVLTLIGLTLLLLRRLFDPRVRATSTPSDIFALLLLLAQLLLGLYATP 144 (228)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHhccceeecCChhHHHHHHHHHHHHHhhhhhhh
Confidence 458888888888888888888877765443334444444444445555555443
No 107
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.21 E-value=3e+02 Score=21.39 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=45.1
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHH
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 148 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 148 (263)
+.+-+..-...+...++|+..-..+.|+. ++.+-++-.+|.-....+++.++.+..+....+|-
T Consensus 41 k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 41 KAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56667777777888888885555554443 33323334478888888899999999988778885
No 108
>PRK11281 hypothetical protein; Provisional
Probab=22.07 E-value=9.8e+02 Score=25.51 Aligned_cols=27 Identities=4% Similarity=0.273 Sum_probs=19.6
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhccc
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGN 109 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 109 (263)
+++.++...+....+.+...||+.+.+
T Consensus 544 ~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 544 KAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455567777777777788899987764
No 109
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=21.28 E-value=6.9e+02 Score=23.45 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=26.2
Q ss_pred cCCCCcccccccC-CCCCcHHHHHHHHHHHHHHhcCccchhhhhhcC
Q 024723 24 GVQPDVAYGYKAK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 69 (263)
Q Consensus 24 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 69 (263)
|..++.++-.+.+ +.-.+......++|...|+-.--.-..-.|++-
T Consensus 194 GA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSY 240 (439)
T COG0733 194 GAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSY 240 (439)
T ss_pred cHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334554433323 233346778888998888876555444445543
No 110
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.99 E-value=3.5e+02 Score=19.89 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723 169 RFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 221 (263)
Q Consensus 169 ~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~ 221 (263)
|+++....+..+.+++-.+|.=+ .|++....=...+++++.....+++
T Consensus 4 rF~~GG~av~~~~ii~~~~~~k~-----~GGifAA~PaV~lasl~~~~~~~~~ 51 (108)
T PF11345_consen 4 RFLLGGLAVVAAYIISRKLPPKS-----FGGIFAAFPAVFLASLLILGIQHGG 51 (108)
T ss_pred eeeeccHHHHHHHHHHHHcCccc-----HHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44444555666666666666321 2333333333333455555554443
No 111
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.40 E-value=1.4e+02 Score=19.08 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=22.1
Q ss_pred chhhhHHHHHHHHHHhhhhhhhhhccccch
Q 024723 83 RGVVVAYIVVALCYFPVALIGYWMFGNKVE 112 (263)
Q Consensus 83 ~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~ 112 (263)
+.+.+-..+.+++|++.|+.=+..+.++.+
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 455566677889999999887777766544
Done!