Query 024723
Match_columns 263
No_of_seqs 123 out of 1129
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 13:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.4 5.8E-06 2E-10 74.9 15.7 174 41-222 189-380 (445)
2 4djk_A Probable glutamate/gamm 98.1 0.0002 6.7E-09 66.0 19.2 104 45-153 203-317 (511)
3 3gia_A Uncharacterized protein 98.0 0.00016 5.3E-09 65.4 14.7 174 38-221 183-369 (444)
4 3dh4_A Sodium/glucose cotransp 82.9 6.5 0.00022 36.1 9.7 46 178-224 379-424 (530)
5 2xq2_A Sodium/glucose cotransp 77.6 21 0.00071 33.2 11.4 45 179-224 409-453 (593)
6 2jln_A MHP1; hydantoin, transp 77.2 42 0.0014 30.4 15.2 95 59-157 224-331 (501)
7 4b4a_A TATC, SEC-independent p 54.8 87 0.003 25.6 12.5 97 121-220 57-177 (249)
8 1afo_A Glycophorin A; integral 22.0 1.2E+02 0.0041 17.2 4.2 25 232-256 13-37 (40)
9 4b4a_A TATC, SEC-independent p 14.6 4.8E+02 0.016 21.0 9.9 60 120-188 145-204 (249)
10 2a65_A Leutaa, Na(+):neurotran 12.7 7.5E+02 0.026 22.3 20.4 29 41-69 240-268 (519)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.43 E-value=5.8e-06 Score=74.88 Aligned_cols=174 Identities=12% Similarity=0.089 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch----hhh-
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DNI- 115 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~----~~i- 115 (263)
++.++..++....|+|.|.........|+ |||+|. ..|+...+...+.++|.+.........+.+.. ++.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r~-ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~ 263 (445)
T 3l1l_A 189 TFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFG 263 (445)
T ss_dssp ----HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHH
Confidence 46789999999999999999999999999 899543 45899999999999999988776666553221 111
Q ss_pred --hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-----c--CCccchhHHHHHHHHHHHHHHHHhh
Q 024723 116 --LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-----N--FSPTRLLRFVVRNLYVASTMFIGIT 186 (263)
Q Consensus 116 --l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~--~~~~~~~~~~~r~~~v~~~~~vA~~ 186 (263)
.++.. +++...+..+...+..+.+.--......+.+...-+.+. . ++++.+.+-.+-...+.....+...
T Consensus 264 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~ 342 (445)
T 3l1l_A 264 DAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342 (445)
T ss_dssp HHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11111 123344555555555555555555555555544332210 0 0112222222211111111111111
Q ss_pred cC----ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCC
Q 024723 187 FP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK 222 (263)
Q Consensus 187 ip----~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~ 222 (263)
.| .++.+.++.+ .+..+.|.++.+.+++.+++++
T Consensus 343 ~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 343 SPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp SHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred cccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 22 3555555554 3456899999999999887654
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.14 E-value=0.0002 Score=65.95 Aligned_cols=104 Identities=6% Similarity=0.071 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh----------h
Q 024723 45 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED----------N 114 (263)
Q Consensus 45 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~----------~ 114 (263)
...++....|+|.|.......-.|+ |||+|. ..|++..+..++.++|.+..+.-....+++... .
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~k~-ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEM----SNPGRD-YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTV 277 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSS----SCCTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHH
Confidence 4456788899999999999999999 899653 559999999999999999887766666543211 1
Q ss_pred hhhCCC-CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHH
Q 024723 115 ILLSLE-KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 153 (263)
Q Consensus 115 il~nl~-~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 153 (263)
+..+.. ...+...+..+...+..+.+.--......+.+.
T Consensus 278 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 317 (511)
T 4djk_A 278 LMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMY 317 (511)
T ss_dssp HHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTC
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 023455556666666665554444444333333
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.97 E-value=0.00016 Score=65.41 Aligned_cols=174 Identities=11% Similarity=0.090 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch-----
Q 024723 38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----- 112 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~----- 112 (263)
.+..+.+++.+++...|+|.|.........|+ |||+| +..|++..+..++.++|.+.........+.+.-
T Consensus 183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~ 257 (444)
T 3gia_A 183 APSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE 257 (444)
T ss_dssp SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGG
T ss_pred CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccc
Confidence 34456788999999999999999999999999 89965 344899999999999999887765554442210
Q ss_pred hhhhhCCC--CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-----cC-CccchhHHHHHHHHHHHHHHHH
Q 024723 113 DNILLSLE--KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-----NF-SPTRLLRFVVRNLYVASTMFIG 184 (263)
Q Consensus 113 ~~il~nl~--~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~~-~~~~~~~~~~r~~~v~~~~~vA 184 (263)
.+..+... .+++...+..+...+..+.+.--......+.+...-+.+. .+ +++...+-.+-. ...+.+++
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~~~--~~~~~~~~ 335 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYIT--SALGVLFA 335 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHHHH--HHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHHHH--HHHHHHHH
Confidence 01110000 0122233344444444444443333333333333322110 00 111111111111 11122222
Q ss_pred hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723 185 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 221 (263)
Q Consensus 185 ~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~ 221 (263)
.+.+++.+.++.+ .+..+.|.++.+.+++.++++
T Consensus 336 -~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 336 -LLFNMEGVASITS--AVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp -HHSCHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred -HHcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence 2346777777754 345788999998888887654
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=82.93 E-value=6.5 Score=36.14 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=20.5
Q ss_pred HHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723 178 ASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 224 (263)
Q Consensus 178 ~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~ 224 (263)
+.+.++|...++++..++++-+..+....-++|.+ -+.++++|.++
T Consensus 379 i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~-llgl~wkr~~~ 424 (530)
T 3dh4_A 379 IIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVF-LLGLFWKKTTS 424 (530)
T ss_dssp HHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHH-HHHHHCTTCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH-HHHHHhCCCCH
Confidence 33444554444555555554433332222233332 34556665443
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=77.64 E-value=21 Score=33.21 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723 179 STMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 224 (263)
Q Consensus 179 ~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~ 224 (263)
.+.++|....+.+.+++++....+....-++|+++ +.++++|.++
T Consensus 409 ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l-lglfwkr~~~ 453 (593)
T 2xq2_A 409 IAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL-LGLFWKKTTS 453 (593)
T ss_dssp HHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH-HHHHCTTCCH
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH-HHHHhCCCCH
Confidence 34445544445666666654444333333344433 3445665443
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=77.18 E-value=42 Score=30.37 Aligned_cols=95 Identities=4% Similarity=-0.018 Sum_probs=44.4
Q ss_pred ccchhhhhhcCCCCCCCCCC---------CC-CcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhC-CCCchHHHH
Q 024723 59 HNVVLEIQATIPSTPEKPSK---------GP-MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS-LEKPTWLIV 127 (263)
Q Consensus 59 ~~~~~~i~~~m~~~~~~p~~---------~~-~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~n-l~~~~~~~~ 127 (263)
..+.+...+.+ |++++ .+ ......++..+...+..++|...-...++.....++.. ++....+..
T Consensus 224 ~~~~~DysRy~----~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~ 299 (501)
T 2jln_A 224 VVSIHDIVKEC----KVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMA 299 (501)
T ss_dssp HTTTHHHHTTB----CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHH
T ss_pred HhccCcccccC----CCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHH
Confidence 35678888887 44443 00 00112234444444445555443333332222233333 222222233
Q ss_pred HHH-HHHHHHHHHHhHh-hhHHHHHHHHHHHh
Q 024723 128 MAN-FFVVVHVIGSYQI-YAMPVFDMIETLLV 157 (263)
Q Consensus 128 ~~~-~~~~i~~~~s~pl-~~~p~~~~~~~~~~ 157 (263)
+.. +...+..+.+--. +.++.-..+.+...
T Consensus 300 ~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~ 331 (501)
T 2jln_A 300 ILFQVFVLLATWSTNPAANLLSPAYTLCSTFP 331 (501)
T ss_dssp HHHHHHHHHHHHTTHHHHHTHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCc
Confidence 344 4455555555443 67777777777653
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=54.83 E-value=87 Score=25.61 Aligned_cols=97 Identities=10% Similarity=0.118 Sum_probs=56.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhH-HHHHHHHHHHHHHHHhh-------------
Q 024723 121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLR-FVVRNLYVASTMFIGIT------------- 186 (263)
Q Consensus 121 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~v~~~~~vA~~------------- 186 (263)
..+.+..-.+++.....+.+.|...+-.-..+..-+.+ ++ ++.... ......+...-...+..
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~--~E-rr~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~ 133 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYS--HE-KRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGL 133 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC--CC-TTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667778899999999999999987664443332222 12 222222 22223333333333332
Q ss_pred -------cC--ChhHHHHhhhhhh-hhhHHHhHhHHHHHHHhCC
Q 024723 187 -------FP--FFGGLLGFFGGFA-FAPTTYFLPCIIWLAIYKP 220 (263)
Q Consensus 187 -------ip--~~~~v~~lvGs~~-~~~l~~i~P~l~~l~~~~~ 220 (263)
.| ++++.++++-.+. ..-++|-+|.+..+-.+-+
T Consensus 134 ~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~G 177 (249)
T 4b4a_A 134 GFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAG 177 (249)
T ss_dssp SSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred chhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 24 6667777765544 3347889999988776544
No 8
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=22.00 E-value=1.2e+02 Score=17.19 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024723 232 ICIVLGLCLMILSPIGGLRQIILQA 256 (263)
Q Consensus 232 ~ii~~g~~~~v~gt~~si~~ii~~~ 256 (263)
.++++|+..++.||.-.+.--++.+
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766555444443
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=14.63 E-value=4.8e+02 Score=21.04 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcC
Q 024723 120 EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFP 188 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip 188 (263)
+-+++...+.+......+.+-.|+...-.. ..+- -+....+.--|.+++....+-|+..|
T Consensus 145 ~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~-----~~Gi----v~~~~l~~~Rr~~iv~~~v~aAiiTP 204 (249)
T 4b4a_A 145 SVDMYISFVLKLVVAFGIAFEMPIVLYVLQ-----KAGV----ITPEQLASFRKYFIVIAFVIGAIIAP 204 (249)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSHHHHHHHHH-----HTTS----SCHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCC----cCHHHHHHHhHHHHHHHHHHHHHHCC
Confidence 345667777777778888887777654331 1111 01111222334455555555567788
No 10
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=12.74 E-value=7.5e+02 Score=22.32 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHhcCccchhhhhhcC
Q 024723 41 TVFNFFSALGDVAFAYAGHNVVLEIQATI 69 (263)
Q Consensus 41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m 69 (263)
+..-...|.+-..|+...-.-..-.+.+-
T Consensus 240 ~~~vw~~A~gQ~FFSLslG~G~~ity~SY 268 (519)
T 2a65_A 240 DPGVWIAAVGQIFFTLSLGFGAIITYASY 268 (519)
T ss_dssp CHHHHHHHHHHHHHHHTTTSSHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHhHHhhhhcc
Confidence 34567889999999998776666667764
Done!