Query 024724
Match_columns 263
No_of_seqs 173 out of 1473
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 3.4E-51 7.4E-56 353.8 22.7 239 2-243 21-335 (336)
2 COG0667 Tas Predicted oxidored 100.0 2.2E-50 4.9E-55 354.2 23.5 230 1-234 9-310 (316)
3 TIGR01293 Kv_beta voltage-depe 100.0 7.1E-46 1.5E-50 327.3 22.7 228 1-232 7-317 (317)
4 COG0656 ARA1 Aldo/keto reducta 100.0 2.1E-45 4.6E-50 312.2 19.0 191 2-236 11-267 (280)
5 PRK10625 tas putative aldo-ket 100.0 7.4E-44 1.6E-48 318.1 24.3 229 1-233 9-339 (346)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 5.1E-44 1.1E-48 318.8 23.2 230 1-234 21-334 (346)
7 PRK14863 bifunctional regulato 100.0 9.3E-44 2E-48 309.9 19.0 214 1-232 1-281 (292)
8 PLN02587 L-galactose dehydroge 100.0 5.3E-43 1.1E-47 308.7 23.9 217 1-233 7-300 (314)
9 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.5E-43 3.3E-48 307.7 19.5 212 7-232 1-282 (283)
10 PRK10376 putative oxidoreducta 100.0 7.2E-43 1.6E-47 304.5 21.7 201 2-233 14-288 (290)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 2.7E-42 5.8E-47 300.1 23.0 211 1-231 7-285 (285)
12 KOG1577 Aldo/keto reductase fa 100.0 2.4E-42 5.2E-47 293.7 18.9 196 1-237 11-289 (300)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.1E-42 1.3E-46 295.3 21.4 188 3-235 1-254 (267)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.5E-39 3.2E-44 281.5 20.4 191 2-235 12-264 (275)
15 COG1453 Predicted oxidoreducta 100.0 4E-37 8.6E-42 264.9 19.3 205 1-233 9-285 (391)
16 COG4989 Predicted oxidoreducta 100.0 1.6E-36 3.5E-41 248.5 16.1 208 2-234 10-294 (298)
17 KOG1576 Predicted oxidoreducta 100.0 7.5E-36 1.6E-40 246.4 17.2 238 1-261 30-342 (342)
18 KOG3023 Glutamate-cysteine lig 97.6 0.00015 3.2E-09 60.2 5.5 67 61-128 159-227 (285)
19 TIGR01182 eda Entner-Doudoroff 90.6 2.8 6.1E-05 34.7 9.2 87 24-126 18-106 (204)
20 PRK06015 keto-hydroxyglutarate 89.7 3.7 8E-05 33.9 9.2 87 24-126 14-102 (201)
21 PRK09856 fructoselysine 3-epim 88.2 4.4 9.6E-05 34.6 9.3 133 7-181 2-144 (275)
22 PRK07535 methyltetrahydrofolat 85.3 23 0.0005 30.4 13.2 133 24-186 23-158 (261)
23 PRK06552 keto-hydroxyglutarate 85.1 11 0.00023 31.5 9.5 87 24-126 23-114 (213)
24 PRK10558 alpha-dehydro-beta-de 84.9 9.7 0.00021 32.6 9.4 103 64-218 10-115 (256)
25 PF01081 Aldolase: KDPG and KH 84.6 5.9 0.00013 32.5 7.6 87 24-126 18-106 (196)
26 cd03527 RuBisCO_small Ribulose 84.2 6.5 0.00014 28.5 6.8 69 10-82 3-87 (99)
27 COG4130 Predicted sugar epimer 84.0 6.6 0.00014 32.7 7.5 82 81-181 49-137 (272)
28 PRK07114 keto-hydroxyglutarate 82.6 18 0.00039 30.3 9.9 90 24-126 25-117 (222)
29 PRK10128 2-keto-3-deoxy-L-rham 81.8 17 0.00038 31.3 9.8 103 64-218 9-114 (267)
30 PRK05718 keto-hydroxyglutarate 81.6 17 0.00037 30.2 9.3 87 24-126 25-113 (212)
31 TIGR03239 GarL 2-dehydro-3-deo 80.0 19 0.00042 30.7 9.4 102 65-218 4-108 (249)
32 CHL00130 rbcS ribulose-1,5-bis 79.7 7.5 0.00016 29.7 5.9 73 7-83 2-90 (138)
33 PRK01045 ispH 4-hydroxy-3-meth 79.5 27 0.00058 30.7 10.2 45 169-214 226-276 (298)
34 PF00809 Pterin_bind: Pterin b 79.4 28 0.0006 28.8 10.0 100 25-130 18-125 (210)
35 PF00101 RuBisCO_small: Ribulo 79.2 6.4 0.00014 28.5 5.3 69 10-82 2-86 (99)
36 cd03319 L-Ala-DL-Glu_epimerase 79.1 16 0.00036 32.0 9.1 101 24-133 189-291 (316)
37 COG1140 NarY Nitrate reductase 76.2 1.3 2.7E-05 39.8 1.1 53 71-123 264-317 (513)
38 cd03315 MLE_like Muconate lact 76.1 39 0.00085 28.8 10.4 101 24-133 141-243 (265)
39 TIGR00216 ispH_lytB (E)-4-hydr 76.0 49 0.0011 28.8 10.8 44 169-213 224-273 (280)
40 cd00423 Pterin_binding Pterin 75.7 50 0.0011 28.2 14.4 143 24-186 22-170 (258)
41 cd00739 DHPS DHPS subgroup of 73.2 59 0.0013 27.8 16.4 144 23-186 21-170 (257)
42 cd03174 DRE_TIM_metallolyase D 71.8 35 0.00075 28.8 9.0 104 23-128 16-135 (265)
43 PRK08195 4-hyroxy-2-oxovalerat 71.6 41 0.00089 30.1 9.6 103 20-127 19-134 (337)
44 COG0159 TrpA Tryptophan syntha 71.1 68 0.0015 27.7 13.0 27 24-50 29-55 (265)
45 TIGR02311 HpaI 2,4-dihydroxyhe 70.8 49 0.0011 28.1 9.6 103 64-218 3-108 (249)
46 PRK12360 4-hydroxy-3-methylbut 69.6 76 0.0016 27.6 11.4 44 169-213 225-274 (281)
47 PRK09490 metH B12-dependent me 69.1 1.6E+02 0.0035 31.3 15.1 134 24-182 382-519 (1229)
48 COG1151 6Fe-6S prismane cluste 69.1 39 0.00084 32.3 9.0 51 26-77 360-412 (576)
49 PRK09140 2-dehydro-3-deoxy-6-p 68.9 55 0.0012 27.0 9.2 88 24-126 20-109 (206)
50 PRK07379 coproporphyrinogen II 68.7 22 0.00047 32.6 7.4 55 5-59 126-185 (400)
51 cd00308 enolase_like Enolase-s 67.3 71 0.0015 26.5 10.9 101 24-133 106-208 (229)
52 TIGR01928 menC_lowGC/arch o-su 67.0 81 0.0018 27.8 10.5 73 61-133 212-286 (324)
53 TIGR03217 4OH_2_O_val_ald 4-hy 66.4 64 0.0014 28.8 9.7 105 20-127 18-133 (333)
54 TIGR03822 AblA_like_2 lysine-2 65.9 96 0.0021 27.4 13.2 106 23-134 119-240 (321)
55 PF11242 DUF2774: Protein of u 65.5 8.5 0.00018 25.1 2.8 22 170-191 15-36 (63)
56 COG0635 HemN Coproporphyrinoge 65.3 26 0.00057 32.3 7.2 53 5-57 148-205 (416)
57 PRK06424 transcription factor; 64.4 29 0.00063 27.0 6.2 84 110-194 22-112 (144)
58 TIGR00190 thiC thiamine biosyn 64.2 1.2E+02 0.0026 27.9 11.7 93 23-138 137-229 (423)
59 cd03323 D-glucarate_dehydratas 64.1 34 0.00074 31.2 7.7 70 61-130 250-321 (395)
60 PRK13352 thiamine biosynthesis 63.5 1.2E+02 0.0027 27.9 11.8 93 23-138 140-232 (431)
61 cd07943 DRE_TIM_HOA 4-hydroxy- 62.9 75 0.0016 27.1 9.3 107 20-127 16-131 (263)
62 TIGR02082 metH 5-methyltetrahy 62.6 2.1E+02 0.0046 30.3 15.5 105 24-133 366-476 (1178)
63 PRK08446 coproporphyrinogen II 62.2 41 0.00089 30.1 7.8 63 5-69 109-176 (350)
64 PF07021 MetW: Methionine bios 62.0 61 0.0013 26.5 7.9 106 29-134 46-172 (193)
65 cd03322 rpsA The starvation se 62.0 93 0.002 27.9 10.1 97 24-129 175-273 (361)
66 COG0761 lytB 4-Hydroxy-3-methy 61.9 86 0.0019 27.4 9.1 46 169-215 228-279 (294)
67 PF05913 DUF871: Bacterial pro 61.4 38 0.00082 30.6 7.3 123 62-215 102-235 (357)
68 cd07944 DRE_TIM_HOA_like 4-hyd 60.3 76 0.0016 27.3 8.8 105 20-127 14-128 (266)
69 PF11020 DUF2610: Domain of un 60.0 21 0.00045 24.7 4.1 28 162-189 48-75 (82)
70 PRK05481 lipoyl synthase; Prov 60.0 50 0.0011 28.8 7.7 95 24-132 178-274 (289)
71 PRK13209 L-xylulose 5-phosphat 59.8 61 0.0013 27.7 8.3 35 6-46 6-41 (283)
72 PRK14017 galactonate dehydrata 59.8 1.1E+02 0.0023 27.8 10.1 70 61-130 217-288 (382)
73 TIGR03821 AblA_like_1 lysine-2 59.7 1.3E+02 0.0027 26.7 12.7 105 24-134 126-246 (321)
74 COG0002 ArgC Acetylglutamate s 59.5 24 0.00053 31.5 5.6 115 24-138 79-249 (349)
75 cd00950 DHDPS Dihydrodipicolin 59.0 1.2E+02 0.0025 26.1 9.9 106 23-129 18-134 (284)
76 TIGR02534 mucon_cyclo muconate 58.1 1.1E+02 0.0023 27.6 9.8 73 61-133 227-301 (368)
77 PLN00191 enolase 57.3 1.7E+02 0.0037 27.4 11.3 67 61-127 325-394 (457)
78 cd03318 MLE Muconate Lactonizi 57.3 72 0.0016 28.6 8.5 72 61-132 228-301 (365)
79 PRK15072 bifunctional D-altron 57.2 1.3E+02 0.0028 27.5 10.3 70 61-130 246-317 (404)
80 PF00682 HMGL-like: HMGL-like 57.0 67 0.0015 26.7 7.8 97 23-124 11-124 (237)
81 PRK00912 ribonuclease P protei 56.4 1.2E+02 0.0026 25.4 12.6 107 25-131 15-142 (237)
82 PRK00087 4-hydroxy-3-methylbut 55.9 1.4E+02 0.0029 29.4 10.6 44 169-213 222-271 (647)
83 PF14871 GHL6: Hypothetical gl 55.4 20 0.00043 27.4 3.9 25 107-131 43-67 (132)
84 COG0626 MetC Cystathionine bet 55.2 1E+02 0.0022 28.3 9.0 78 61-138 116-196 (396)
85 PRK13361 molybdenum cofactor b 54.9 1.5E+02 0.0033 26.1 10.6 53 22-80 44-98 (329)
86 PRK08776 cystathionine gamma-s 54.7 1.6E+02 0.0035 26.9 10.4 73 62-134 114-188 (405)
87 PF02401 LYTB: LytB protein; 54.6 1.4E+02 0.003 26.0 9.4 44 169-213 225-274 (281)
88 cd03325 D-galactonate_dehydrat 54.2 72 0.0015 28.5 7.9 68 61-128 216-285 (352)
89 cd03316 MR_like Mandelate race 53.4 1.3E+02 0.0028 26.8 9.5 97 24-129 201-299 (357)
90 TIGR01496 DHPS dihydropteroate 53.2 1.4E+02 0.0031 25.4 15.5 99 23-128 20-125 (257)
91 PRK12331 oxaloacetate decarbox 52.8 92 0.002 29.1 8.5 105 22-126 22-141 (448)
92 PF14502 HTH_41: Helix-turn-he 52.3 12 0.00026 23.2 1.8 30 168-197 6-37 (48)
93 PRK13210 putative L-xylulose 5 52.2 1.1E+02 0.0024 26.0 8.6 20 27-46 17-36 (284)
94 TIGR02109 PQQ_syn_pqqE coenzym 52.1 1.7E+02 0.0037 26.0 11.7 100 22-130 36-154 (358)
95 PRK08208 coproporphyrinogen II 51.2 56 0.0012 30.2 6.9 71 5-78 152-227 (430)
96 TIGR00262 trpA tryptophan synt 51.2 1.6E+02 0.0034 25.2 11.0 106 24-131 22-151 (256)
97 TIGR03471 HpnJ hopanoid biosyn 51.0 66 0.0014 30.0 7.4 20 24-43 259-278 (472)
98 PRK11613 folP dihydropteroate 50.4 1.7E+02 0.0037 25.5 14.4 100 24-129 36-141 (282)
99 COG1168 MalY Bifunctional PLP- 50.3 1.1E+02 0.0024 27.8 8.2 56 82-137 146-207 (388)
100 cd07940 DRE_TIM_IPMS 2-isoprop 49.9 1.6E+02 0.0035 25.1 10.8 98 22-125 16-131 (268)
101 COG0135 TrpF Phosphoribosylant 49.9 72 0.0016 26.5 6.6 88 24-125 11-102 (208)
102 TIGR02631 xylA_Arthro xylose i 49.9 2E+02 0.0044 26.2 11.7 41 6-46 7-52 (382)
103 cd07948 DRE_TIM_HCS Saccharomy 49.8 1.7E+02 0.0036 25.1 9.3 100 22-128 18-132 (262)
104 COG2185 Sbm Methylmalonyl-CoA 49.6 88 0.0019 24.3 6.6 56 75-134 19-76 (143)
105 PLN02746 hydroxymethylglutaryl 49.2 2E+02 0.0044 25.9 12.3 98 22-127 64-181 (347)
106 PF13378 MR_MLE_C: Enolase C-t 48.9 19 0.00041 26.1 2.8 54 79-133 3-57 (111)
107 smart00657 RPOL4c DNA-directed 48.6 60 0.0013 24.1 5.5 61 165-235 54-114 (118)
108 PRK13958 N-(5'-phosphoribosyl) 48.4 74 0.0016 26.2 6.6 33 71-103 51-84 (207)
109 PRK08247 cystathionine gamma-s 48.0 2.1E+02 0.0045 25.7 10.2 62 74-135 117-180 (366)
110 TIGR00542 hxl6Piso_put hexulos 47.8 1.3E+02 0.0027 25.7 8.3 23 26-48 16-38 (279)
111 PF04481 DUF561: Protein of un 47.8 1.6E+02 0.0035 24.7 8.2 94 24-126 25-150 (242)
112 COG0422 ThiC Thiamine biosynth 47.2 1.7E+02 0.0037 26.7 8.8 112 4-138 113-230 (432)
113 PRK06294 coproporphyrinogen II 47.1 87 0.0019 28.3 7.4 62 5-70 114-182 (370)
114 PRK15440 L-rhamnonate dehydrat 47.0 1.9E+02 0.0041 26.5 9.6 67 61-127 248-318 (394)
115 PF02571 CbiJ: Precorrin-6x re 46.7 1E+02 0.0022 26.3 7.3 91 26-129 10-101 (249)
116 PF07287 DUF1446: Protein of u 46.7 50 0.0011 29.9 5.6 19 110-128 60-78 (362)
117 TIGR00735 hisF imidazoleglycer 46.3 1.5E+02 0.0033 25.1 8.4 98 25-124 154-253 (254)
118 COG0800 Eda 2-keto-3-deoxy-6-p 45.2 1.8E+02 0.0039 24.2 8.9 87 24-126 23-111 (211)
119 KOG0173 20S proteasome, regula 45.2 18 0.0004 30.6 2.4 36 5-40 159-200 (271)
120 COG1748 LYS9 Saccharopine dehy 45.2 34 0.00073 31.3 4.3 26 25-50 78-103 (389)
121 PLN02428 lipoic acid synthase 45.0 1.4E+02 0.003 27.0 8.1 22 111-132 304-325 (349)
122 PF09989 DUF2229: CoA enzyme a 44.8 1.5E+02 0.0032 24.8 7.9 27 101-127 192-218 (221)
123 cd03327 MR_like_2 Mandelate ra 44.8 2E+02 0.0044 25.5 9.3 67 61-127 211-279 (341)
124 PRK13347 coproporphyrinogen II 44.6 68 0.0015 29.8 6.4 55 5-59 163-222 (453)
125 cd03321 mandelate_racemase Man 43.8 2.4E+02 0.0052 25.2 10.1 66 61-126 226-293 (355)
126 PRK09061 D-glutamate deacylase 43.7 2.6E+02 0.0055 26.5 10.2 97 28-126 171-280 (509)
127 cd01320 ADA Adenosine deaminas 43.3 2.1E+02 0.0045 25.0 9.1 101 28-129 75-194 (325)
128 COG2949 SanA Uncharacterized m 42.7 1.7E+02 0.0036 24.5 7.5 38 44-81 64-102 (235)
129 TIGR00715 precor6x_red precorr 42.7 1.2E+02 0.0025 26.1 7.1 88 27-128 11-99 (256)
130 PF01402 RHH_1: Ribbon-helix-h 42.7 53 0.0012 18.7 3.6 22 166-187 9-30 (39)
131 PRK13352 thiamine biosynthesis 42.4 2.8E+02 0.0061 25.6 11.1 153 24-213 75-246 (431)
132 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.3 1.7E+02 0.0038 25.1 8.2 106 20-126 15-136 (275)
133 cd00408 DHDPS-like Dihydrodipi 42.2 2.2E+02 0.0047 24.3 10.0 187 7-232 68-281 (281)
134 CHL00040 rbcL ribulose-1,5-bis 42.1 1.6E+02 0.0034 27.8 8.3 109 23-133 180-300 (475)
135 cd00952 CHBPH_aldolase Trans-o 41.9 2.4E+02 0.0052 24.7 14.1 101 23-128 26-142 (309)
136 KOG0369 Pyruvate carboxylase [ 41.8 49 0.0011 32.5 4.9 93 28-133 95-196 (1176)
137 PRK12330 oxaloacetate decarbox 41.6 1.6E+02 0.0035 28.0 8.3 102 23-124 24-140 (499)
138 PRK02901 O-succinylbenzoate sy 41.4 2.5E+02 0.0054 25.0 9.2 72 61-134 173-245 (327)
139 TIGR03070 couple_hipB transcri 41.4 41 0.00089 20.6 3.2 26 169-194 5-30 (58)
140 PRK00164 moaA molybdenum cofac 41.1 2.5E+02 0.0054 24.6 10.8 53 22-80 48-102 (331)
141 COG1831 Predicted metal-depend 40.8 1.7E+02 0.0036 25.4 7.5 62 61-122 110-185 (285)
142 COG1809 (2R)-phospho-3-sulfola 40.8 77 0.0017 26.6 5.3 62 23-91 57-126 (258)
143 KOG0781 Signal recognition par 40.8 73 0.0016 30.1 5.7 69 19-90 447-520 (587)
144 PF01053 Cys_Met_Meta_PP: Cys/ 40.7 1.2E+02 0.0026 27.6 7.3 77 61-137 108-187 (386)
145 KOG2019 Metalloendoprotease HM 40.4 3.1E+02 0.0068 27.4 9.9 135 52-232 382-529 (998)
146 PRK01222 N-(5'-phosphoribosyl) 40.4 1.2E+02 0.0026 25.1 6.6 68 32-103 16-86 (210)
147 PRK05628 coproporphyrinogen II 40.0 1.2E+02 0.0026 27.3 7.2 55 5-59 119-178 (375)
148 PRK05799 coproporphyrinogen II 39.9 1.4E+02 0.003 26.9 7.6 55 5-59 110-169 (374)
149 PRK14040 oxaloacetate decarbox 39.9 2.1E+02 0.0046 27.8 9.0 103 20-124 21-140 (593)
150 PRK05692 hydroxymethylglutaryl 39.8 2.5E+02 0.0055 24.4 9.8 97 22-126 22-138 (287)
151 PF00356 LacI: Bacterial regul 38.9 45 0.00097 20.4 2.9 42 171-218 2-43 (46)
152 TIGR02026 BchE magnesium-proto 38.7 1.1E+02 0.0025 28.8 7.0 16 24-39 253-268 (497)
153 COG0352 ThiE Thiamine monophos 38.6 1.6E+02 0.0034 24.5 7.0 18 29-46 24-41 (211)
154 PRK08599 coproporphyrinogen II 38.5 1.3E+02 0.0028 27.1 7.1 55 5-59 111-170 (377)
155 COG0274 DeoC Deoxyribose-phosp 38.2 1.2E+02 0.0025 25.6 6.1 38 6-51 128-165 (228)
156 cd04731 HisF The cyclase subun 38.2 1.6E+02 0.0034 24.6 7.2 94 25-120 148-243 (243)
157 cd02803 OYE_like_FMN_family Ol 37.8 2E+02 0.0043 25.1 8.1 77 24-100 226-310 (327)
158 TIGR01108 oadA oxaloacetate de 37.6 1.9E+02 0.0041 28.1 8.3 106 22-127 17-137 (582)
159 PRK05301 pyrroloquinoline quin 37.6 3E+02 0.0066 24.6 11.8 102 22-130 45-163 (378)
160 PF10668 Phage_terminase: Phag 37.3 68 0.0015 20.9 3.7 17 170-186 24-40 (60)
161 COG2873 MET17 O-acetylhomoseri 37.2 3.3E+02 0.0072 25.0 9.9 100 31-138 93-194 (426)
162 PF07027 DUF1318: Protein of u 37.0 69 0.0015 23.0 4.0 29 162-190 44-72 (95)
163 KOG0053 Cystathionine beta-lya 36.9 2.9E+02 0.0063 25.5 8.9 98 28-137 105-208 (409)
164 PRK13111 trpA tryptophan synth 36.3 2.8E+02 0.006 23.8 11.5 91 24-122 24-118 (258)
165 PRK12581 oxaloacetate decarbox 36.0 2.5E+02 0.0055 26.4 8.6 106 20-125 29-149 (468)
166 cd00452 KDPG_aldolase KDPG and 35.8 2.3E+02 0.005 22.7 9.5 88 24-126 14-102 (190)
167 PF01118 Semialdhyde_dh: Semia 35.7 53 0.0011 24.2 3.5 28 24-51 75-102 (121)
168 cd03681 MM_CoA_mutase_MeaA Coe 35.6 1.2E+02 0.0026 27.9 6.3 90 24-124 12-107 (407)
169 PRK09875 putative hydrolase; P 35.1 1.4E+02 0.003 26.1 6.5 30 26-56 34-64 (292)
170 PLN02591 tryptophan synthase 34.9 2.9E+02 0.0062 23.6 11.8 27 24-50 14-40 (250)
171 COG4464 CapC Capsular polysacc 34.6 1.5E+02 0.0033 24.9 6.1 30 24-53 18-47 (254)
172 PHA02128 hypothetical protein 34.4 1.1E+02 0.0023 22.5 4.7 67 61-127 63-150 (151)
173 PF05368 NmrA: NmrA-like famil 34.0 1.9E+02 0.0041 23.6 7.0 97 26-133 9-106 (233)
174 PRK09282 pyruvate carboxylase 33.9 2.2E+02 0.0048 27.6 8.2 105 22-126 22-141 (592)
175 PRK09613 thiH thiamine biosynt 33.7 4.1E+02 0.0089 25.0 12.3 164 23-217 115-305 (469)
176 PRK07535 methyltetrahydrofolat 33.7 2.1E+02 0.0045 24.6 7.2 56 26-82 138-200 (261)
177 cd01297 D-aminoacylase D-amino 33.6 1.7E+02 0.0037 26.7 7.1 53 27-81 168-222 (415)
178 TIGR02080 O_succ_thio_ly O-suc 33.6 3.6E+02 0.0079 24.3 9.9 72 63-134 106-179 (382)
179 TIGR00789 flhB_rel flhB C-term 33.5 46 0.00099 23.2 2.6 25 111-135 30-54 (82)
180 PTZ00081 enolase; Provisional 33.2 4.1E+02 0.0088 24.8 11.2 67 61-127 311-382 (439)
181 PLN02289 ribulose-bisphosphate 33.1 1.6E+02 0.0035 23.5 5.8 64 19-82 72-163 (176)
182 TIGR02660 nifV_homocitr homoci 32.9 3.7E+02 0.008 24.2 10.7 97 22-125 19-130 (365)
183 PF13518 HTH_28: Helix-turn-he 32.8 51 0.0011 19.9 2.6 21 170-191 14-34 (52)
184 COG3623 SgaU Putative L-xylulo 32.6 1.2E+02 0.0027 25.7 5.4 46 1-47 66-117 (287)
185 cd03320 OSBS o-Succinylbenzoat 32.6 1.8E+02 0.004 24.6 6.8 72 61-133 167-239 (263)
186 TIGR01851 argC_other N-acetyl- 32.4 1.8E+02 0.0038 25.8 6.6 115 24-138 58-213 (310)
187 cd03324 rTSbeta_L-fuconate_deh 32.3 4E+02 0.0088 24.5 10.0 67 61-127 280-351 (415)
188 cd00614 CGS_like CGS_like: Cys 32.1 3.7E+02 0.008 24.0 9.3 54 82-135 114-169 (369)
189 COG1832 Predicted CoA-binding 31.9 1.7E+02 0.0038 22.6 5.7 93 24-126 28-125 (140)
190 COG0825 AccA Acetyl-CoA carbox 31.6 49 0.0011 28.9 3.0 25 27-51 138-165 (317)
191 PRK14041 oxaloacetate decarbox 30.7 2.8E+02 0.006 26.1 8.0 105 22-126 21-140 (467)
192 PRK06298 type III secretion sy 30.7 39 0.00084 30.5 2.4 35 111-145 293-327 (356)
193 TIGR00190 thiC thiamine biosyn 30.4 4.4E+02 0.0095 24.3 10.0 151 24-213 75-243 (423)
194 cd08212 RuBisCO_large_I Ribulo 30.2 4.6E+02 0.01 24.5 9.5 108 23-133 158-277 (450)
195 COG0796 MurI Glutamate racemas 30.1 1.5E+02 0.0033 25.6 5.7 177 40-239 34-227 (269)
196 cd07939 DRE_TIM_NifV Streptomy 29.8 3.5E+02 0.0075 22.9 10.7 97 22-125 16-127 (259)
197 PRK09058 coproporphyrinogen II 29.8 1.7E+02 0.0037 27.2 6.5 55 5-59 174-233 (449)
198 PRK03170 dihydrodipicolinate s 29.7 3.6E+02 0.0079 23.2 14.4 104 23-128 19-134 (292)
199 cd00423 Pterin_binding Pterin 29.5 2.3E+02 0.005 24.1 6.9 56 26-82 150-210 (258)
200 cd01075 NAD_bind_Leu_Phe_Val_D 29.3 62 0.0014 26.4 3.2 73 112-192 123-196 (200)
201 TIGR00641 acid_CoA_mut_N methy 29.1 2.3E+02 0.0051 27.1 7.3 90 23-123 60-155 (528)
202 PRK06702 O-acetylhomoserine am 29.1 4.4E+02 0.0096 24.4 9.1 55 81-135 135-191 (432)
203 PRK14047 putative methyltransf 29.1 2.2E+02 0.0049 25.0 6.5 92 23-125 49-192 (310)
204 PRK07269 cystathionine gamma-s 28.8 4.3E+02 0.0093 23.7 9.7 55 81-135 124-180 (364)
205 PRK05339 PEP synthetase regula 28.6 1.4E+02 0.0031 25.8 5.3 122 100-231 62-209 (269)
206 PRK06176 cystathionine gamma-s 28.6 4.4E+02 0.0096 23.8 9.8 55 81-135 122-178 (380)
207 TIGR01927 menC_gamma/gm+ o-suc 28.5 4E+02 0.0087 23.3 8.6 73 62-134 196-270 (307)
208 PRK00507 deoxyribose-phosphate 28.4 2.5E+02 0.0054 23.4 6.7 36 23-58 133-169 (221)
209 cd04742 NPD_FabD 2-Nitropropan 28.4 2.8E+02 0.006 25.7 7.4 62 67-129 34-103 (418)
210 cd02932 OYE_YqiM_FMN Old yello 28.3 2.9E+02 0.0062 24.5 7.5 75 24-100 239-319 (336)
211 PF01876 RNase_P_p30: RNase P 28.2 1.4E+02 0.0029 23.1 4.8 60 72-131 24-85 (150)
212 PF00697 PRAI: N-(5'phosphorib 28.2 1.5E+02 0.0032 24.1 5.2 69 32-104 12-81 (197)
213 PF03874 RNA_pol_Rpb4: RNA pol 27.9 64 0.0014 23.7 2.8 57 167-233 58-114 (117)
214 PLN02363 phosphoribosylanthran 27.7 1.6E+02 0.0034 25.3 5.5 32 72-103 99-131 (256)
215 PRK13109 flhB flagellar biosyn 27.7 46 0.00099 30.1 2.3 35 111-145 301-335 (358)
216 PRK00436 argC N-acetyl-gamma-g 27.3 2.3E+02 0.005 25.2 6.7 113 24-138 77-243 (343)
217 TIGR01404 FlhB_rel_III type II 27.2 49 0.0011 29.7 2.4 35 111-145 291-325 (342)
218 PRK12581 oxaloacetate decarbox 27.2 5.4E+02 0.012 24.3 10.3 50 25-79 104-153 (468)
219 PRK05994 O-acetylhomoserine am 26.9 5E+02 0.011 23.9 9.4 53 81-133 136-190 (427)
220 PRK11675 LexA regulated protei 26.9 87 0.0019 22.3 3.1 24 164-187 58-81 (90)
221 TIGR01502 B_methylAsp_ase meth 26.7 2.5E+02 0.0054 25.9 6.9 54 77-130 303-357 (408)
222 PRK10076 pyruvate formate lyas 26.5 3.7E+02 0.008 22.2 8.2 27 24-50 52-79 (213)
223 cd03328 MR_like_3 Mandelate ra 26.5 3.4E+02 0.0073 24.2 7.7 67 61-127 222-292 (352)
224 PRK12928 lipoyl synthase; Prov 26.4 3.8E+02 0.0083 23.3 7.8 71 61-132 191-282 (290)
225 PRK12721 secretion system appa 26.4 50 0.0011 29.7 2.3 35 111-145 292-326 (349)
226 PF08418 Pol_alpha_B_N: DNA po 26.1 70 0.0015 27.1 3.1 51 164-215 8-61 (253)
227 cd03680 MM_CoA_mutase_ICM_like 26.0 2.9E+02 0.0063 26.5 7.3 89 24-123 81-175 (538)
228 cd03679 MM_CoA_mutase_alpha_li 26.0 2.9E+02 0.0063 26.5 7.4 90 23-123 77-172 (536)
229 PRK15052 D-tagatose-1,6-bispho 25.6 1.2E+02 0.0027 27.9 4.6 46 2-48 76-128 (421)
230 cd02933 OYE_like_FMN Old yello 25.5 4.8E+02 0.01 23.2 8.6 73 24-100 239-313 (338)
231 PRK04208 rbcL ribulose bisopho 25.5 5.8E+02 0.012 24.1 9.7 109 23-133 173-293 (468)
232 PF01261 AP_endonuc_2: Xylose 25.3 1.6E+02 0.0036 23.2 5.1 54 111-181 74-127 (213)
233 PF13443 HTH_26: Cro/C1-type H 25.2 29 0.00064 22.1 0.4 14 205-218 39-52 (63)
234 COG5007 Predicted transcriptio 25.0 2E+02 0.0044 19.8 4.5 58 24-87 2-76 (80)
235 PRK08574 cystathionine gamma-s 24.6 5.3E+02 0.011 23.3 9.0 54 82-135 125-181 (385)
236 PF08013 Tagatose_6_P_K: Tagat 24.6 84 0.0018 29.0 3.3 46 2-48 79-131 (424)
237 PRK05968 hypothetical protein; 24.5 5.3E+02 0.011 23.3 9.6 53 82-134 137-190 (389)
238 cd03317 NAAAR N-acylamino acid 24.3 3E+02 0.0065 24.4 6.9 71 61-131 217-289 (354)
239 PHA01976 helix-turn-helix prot 24.1 62 0.0014 20.8 1.9 26 169-194 5-30 (67)
240 PRK15458 tagatose 6-phosphate 24.1 1.3E+02 0.0028 27.8 4.5 46 2-48 79-131 (426)
241 PRK09536 btuD corrinoid ABC tr 24.1 2.3E+02 0.005 26.0 6.2 73 61-133 280-352 (402)
242 cd01914 HCP Hybrid cluster pro 24.1 1.5E+02 0.0032 27.6 4.8 53 24-76 220-274 (423)
243 cd08583 PI-PLCc_GDPD_SF_unchar 23.9 2.1E+02 0.0046 23.7 5.6 19 111-129 195-213 (237)
244 COG0159 TrpA Tryptophan syntha 23.8 1E+02 0.0022 26.7 3.5 34 197-230 208-242 (265)
245 PRK09856 fructoselysine 3-epim 23.8 4.1E+02 0.0089 22.3 7.5 58 76-133 3-72 (275)
246 PF03618 Kinase-PPPase: Kinase 23.7 1.8E+02 0.004 24.9 5.1 122 100-231 56-203 (255)
247 PF03102 NeuB: NeuB family; I 23.7 4.5E+02 0.0098 22.2 8.8 107 23-133 53-183 (241)
248 PRK10415 tRNA-dihydrouridine s 23.5 3.4E+02 0.0074 23.9 7.0 73 26-101 149-224 (321)
249 COG3607 Predicted lactoylgluta 23.5 1.1E+02 0.0024 23.3 3.2 27 24-50 81-107 (133)
250 COG0502 BioB Biotin synthase a 23.4 5.4E+02 0.012 23.1 10.0 107 24-133 85-204 (335)
251 PF00388 PI-PLC-X: Phosphatidy 23.3 56 0.0012 25.0 1.8 22 29-50 29-50 (146)
252 PLN02509 cystathionine beta-ly 23.2 6.3E+02 0.014 23.7 9.9 55 81-135 205-261 (464)
253 PRK13753 dihydropteroate synth 23.1 5E+02 0.011 22.6 14.8 101 23-131 22-129 (279)
254 PRK12773 flhB flagellar biosyn 23.1 65 0.0014 31.2 2.4 35 111-145 591-625 (646)
255 cd03314 MAL Methylaspartate am 23.1 3E+02 0.0065 25.0 6.6 69 61-129 245-320 (369)
256 CHL00200 trpA tryptophan synth 23.0 4.9E+02 0.011 22.3 10.8 102 24-127 27-150 (263)
257 PF01476 LysM: LysM domain; I 22.9 91 0.002 18.0 2.3 18 169-186 7-24 (44)
258 PRK07811 cystathionine gamma-s 22.9 5.7E+02 0.012 23.1 8.7 54 81-134 134-189 (388)
259 PRK00915 2-isopropylmalate syn 22.8 4.8E+02 0.01 24.8 8.3 101 22-129 22-140 (513)
260 PRK09726 antitoxin HipB; Provi 22.8 1.3E+02 0.0027 20.9 3.4 53 167-219 13-67 (88)
261 TIGR01329 cysta_beta_ly_E cyst 22.7 5.6E+02 0.012 23.0 10.0 55 81-135 119-175 (378)
262 PTZ00413 lipoate synthase; Pro 22.7 6.1E+02 0.013 23.3 8.4 22 111-132 352-373 (398)
263 TIGR01114 mtrH N5-methyltetrah 22.7 3.5E+02 0.0076 23.9 6.6 92 23-125 49-192 (314)
264 PRK08255 salicylyl-CoA 5-hydro 22.6 3.6E+02 0.0078 27.0 7.7 96 24-123 636-737 (765)
265 cd00739 DHPS DHPS subgroup of 22.6 3.7E+02 0.0079 22.9 6.8 54 28-82 152-209 (257)
266 PF12651 RHH_3: Ribbon-helix-h 22.6 1.4E+02 0.003 17.9 3.1 22 165-186 11-32 (44)
267 TIGR02810 agaZ_gatZ D-tagatose 22.5 1.6E+02 0.0034 27.2 4.6 46 2-48 75-127 (420)
268 cd00740 MeTr MeTr subgroup of 22.5 4.9E+02 0.011 22.1 14.3 104 24-133 24-131 (252)
269 TIGR00674 dapA dihydrodipicoli 22.3 5E+02 0.011 22.2 10.3 103 23-129 16-132 (285)
270 TIGR00126 deoC deoxyribose-pho 22.2 2.7E+02 0.006 23.0 5.8 63 24-90 130-194 (211)
271 PRK13523 NADPH dehydrogenase N 22.1 3.6E+02 0.0079 24.0 6.9 84 24-107 225-312 (337)
272 PRK09284 thiamine biosynthesis 22.1 4.3E+02 0.0092 25.5 7.4 91 23-138 292-382 (607)
273 PRK12468 flhB flagellar biosyn 22.0 70 0.0015 29.3 2.3 35 111-145 299-333 (386)
274 cd00512 MM_CoA_mutase Coenzyme 22.0 3.5E+02 0.0077 24.8 6.9 88 24-122 12-105 (399)
275 PF13744 HTH_37: Helix-turn-he 21.9 52 0.0011 22.5 1.2 55 165-219 17-74 (80)
276 PRK09240 thiH thiamine biosynt 21.8 6E+02 0.013 22.9 10.7 94 23-123 104-217 (371)
277 TIGR00238 KamA family protein. 21.7 5.7E+02 0.012 22.7 12.8 103 25-134 144-263 (331)
278 PF10941 DUF2620: Protein of u 21.7 99 0.0022 23.0 2.7 25 61-86 84-108 (117)
279 COG1038 PycA Pyruvate carboxyl 21.6 1.8E+02 0.0039 29.5 5.0 98 26-132 17-116 (1149)
280 cd00248 Mth938-like Mth938-lik 21.6 2.7E+02 0.0057 20.3 5.0 51 79-129 37-87 (109)
281 PRK09140 2-dehydro-3-deoxy-6-p 21.5 4.6E+02 0.01 21.5 7.6 49 71-122 10-61 (206)
282 PRK05927 hypothetical protein; 21.5 6E+02 0.013 22.8 9.1 23 23-45 76-98 (350)
283 cd08556 GDPD Glycerophosphodie 21.4 3E+02 0.0064 21.4 5.8 106 24-129 11-168 (189)
284 PF01959 DHQS: 3-dehydroquinat 21.4 6.1E+02 0.013 22.9 9.6 36 182-217 133-168 (354)
285 PRK05904 coproporphyrinogen II 21.3 3.8E+02 0.0082 24.0 6.9 55 5-59 114-173 (353)
286 PRK08861 cystathionine gamma-s 21.3 6.2E+02 0.014 23.0 9.9 63 73-135 118-182 (388)
287 COG3876 Uncharacterized protei 21.2 89 0.0019 27.8 2.7 93 76-191 110-208 (409)
288 TIGR01702 CO_DH_cata carbon-mo 21.1 2.1E+02 0.0045 28.0 5.4 51 25-76 370-434 (621)
289 PRK09108 type III secretion sy 20.9 89 0.0019 28.2 2.8 25 111-135 294-318 (353)
290 PRK10550 tRNA-dihydrouridine s 20.9 4.3E+02 0.0093 23.3 7.1 72 26-100 148-223 (312)
291 PF10723 RepB-RCR_reg: Replica 20.8 1.7E+02 0.0036 20.5 3.6 25 166-190 51-75 (84)
292 TIGR00300 conserved hypothetic 20.8 4.8E+02 0.01 24.0 7.2 127 26-182 188-344 (407)
293 COG1564 THI80 Thiamine pyropho 20.5 1.8E+02 0.0039 24.2 4.3 40 177-216 74-115 (212)
294 PF00701 DHDPS: Dihydrodipicol 20.4 5.5E+02 0.012 22.0 12.7 102 23-128 19-134 (289)
295 PRK08156 type III secretion sy 20.3 76 0.0017 28.7 2.2 35 111-145 287-321 (361)
296 TIGR03128 RuMP_HxlA 3-hexulose 20.3 4.6E+02 0.0099 21.0 8.5 94 24-126 10-107 (206)
297 PRK08248 O-acetylhomoserine am 20.2 6.9E+02 0.015 23.0 10.5 55 79-133 135-191 (431)
298 PRK09426 methylmalonyl-CoA mut 20.0 3.9E+02 0.0085 26.7 7.2 90 23-123 83-178 (714)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.4e-51 Score=353.83 Aligned_cols=239 Identities=46% Similarity=0.796 Sum_probs=213.5
Q ss_pred CcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh---------------------
Q 024724 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--------------------- 60 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--------------------- 60 (263)
|++||+||||||.+.. |+...++++++++++.|+|+|+|+||||++||.|.||.++|+
T Consensus 21 gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~ 99 (336)
T KOG1575|consen 21 GLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFD 99 (336)
T ss_pred Cceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEecc
Confidence 6899999999974433 555579999999999999999999999999999999999999
Q ss_pred -----------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCC
Q 024724 61 -----------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH 93 (263)
Q Consensus 61 -----------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~ 93 (263)
+++|.+++++|||||||+|+++.++++++....
T Consensus 100 ~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~ 179 (336)
T KOG1575|consen 100 YGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVA 179 (336)
T ss_pred CCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhc
Confidence 999999999999999999999999999999987
Q ss_pred C--ceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCcccCCC-CcCCCCCCCcccccC----CCCCCcchhhhH
Q 024724 94 P--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK-AVVESVPADSILHFF----PRYKGENLDRNK 165 (263)
Q Consensus 94 ~--~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 165 (263)
+ +.++|++||++.|..+ .++++.|++.||++++|+||++|+|+++ ....+.+.++.+... +++... ....
T Consensus 180 ~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~ 257 (336)
T KOG1575|consen 180 PIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEG--DKQK 257 (336)
T ss_pred CCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchh--hhHH
Confidence 7 9999999999999844 6699999999999999999999999999 444555555543322 222222 5678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCCccCCCCCc
Q 024724 166 NIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIEEVAGDRDP 243 (263)
Q Consensus 166 ~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~~~~~~~~~ 243 (263)
..++++.+||+++|+|++|+||+|+++++.+++||||+++++||+||++|+.+.||++++.+|++..+.....++++.
T Consensus 258 ~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 258 PILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999888888774
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.2e-50 Score=354.18 Aligned_cols=230 Identities=42% Similarity=0.706 Sum_probs=207.3
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
+|++||+||||||.+|+.+.. .+.+++.++|++|+|+||||||||++||.|.||+++|+
T Consensus 9 ~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~ 87 (316)
T COG0667 9 SGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYR 87 (316)
T ss_pred CCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccC
Confidence 489999999999999875332 25567888999999999999999999999999999997
Q ss_pred --------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHh
Q 024724 61 --------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAH 90 (263)
Q Consensus 61 --------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~ 90 (263)
+.+|.+|+++||||+||+||++.+++.+++
T Consensus 88 ~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~ 167 (316)
T COG0667 88 PGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEAL 167 (316)
T ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHH
Confidence 889999999999999999999999999999
Q ss_pred cC-CCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCccccc-CCCCCCcchhhhHHHH
Q 024724 91 GV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF-FPRYKGENLDRNKNIY 168 (263)
Q Consensus 91 ~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (263)
+. .+++++|.+||+++|..+.+++++|+++||++++|+||++|+|++++... +. +.|.. .+.+..+..+.....+
T Consensus 168 ~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~~-~~r~~~~~~~~~~~~~~~~~~~ 244 (316)
T COG0667 168 AVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--PE-GSRASELPRFQRELTERGLAIL 244 (316)
T ss_pred HhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--cc-hhhccccccchhhhhHHHHHHH
Confidence 99 59999999999999887778999999999999999999999999995443 22 22222 3566677788899999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 024724 169 FRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 234 (263)
Q Consensus 169 ~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~ 234 (263)
..++++|+++|+|++|+||+|++++|.+++||+|+++++||++|+++++..|++++++.|++....
T Consensus 245 ~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 245 RALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999988754
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7.1e-46 Score=327.33 Aligned_cols=228 Identities=29% Similarity=0.483 Sum_probs=190.8
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
.|++||+||||||.+ ||...+.+++.++|+.|+++|||+||||++||.|.||+++|+
T Consensus 7 tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~ 83 (317)
T TIGR01293 7 SGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFW 83 (317)
T ss_pred CCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeecc
Confidence 478999999999974 233347889999999999999999999999999999999986
Q ss_pred ------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC
Q 024724 61 ------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 92 (263)
Q Consensus 61 ------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 92 (263)
|++|++|+++||||+||+|||+.+++.++...
T Consensus 84 ~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 163 (317)
T TIGR01293 84 GGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSV 163 (317)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHH
Confidence 89999999999999999999999888776432
Q ss_pred ------CCceEEeccCCCcccch-hhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCccccc--CCCCC----Cc
Q 024724 93 ------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF--FPRYK----GE 159 (263)
Q Consensus 93 ------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~--~~~~~----~~ 159 (263)
.+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++... .+.+..+.. .+++. .+
T Consensus 164 ~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (317)
T TIGR01293 164 ARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQWLKDKILSE 242 (317)
T ss_pred HHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccchhhhhhcch
Confidence 46789999999999874 668999999999999999999999999984332 233221110 01111 11
Q ss_pred chhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC--CCCHHHHHHHHHhC
Q 024724 160 NLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI--KLTKEDLKEISDAV 232 (263)
Q Consensus 160 ~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~--~Lt~e~~~~i~~~~ 232 (263)
......+.++.++++|+++|+|++|+||+|++++|+++++|+|+++++|+++|++++++ +||++++++|++++
T Consensus 243 ~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~~ 317 (317)
T TIGR01293 243 EGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSIL 317 (317)
T ss_pred hhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhhC
Confidence 12235677789999999999999999999999999999999999999999999999987 99999999999753
No 4
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.1e-45 Score=312.22 Aligned_cols=191 Identities=29% Similarity=0.536 Sum_probs=173.8
Q ss_pred CcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh---------------------
Q 024724 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--------------------- 60 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--------------------- 60 (263)
|.+||.||||||.+++ .+.+.++|..|++.|+++||||.+|| ||+.+|+
T Consensus 11 g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~ReelFittKvw~~ 80 (280)
T COG0656 11 GVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREELFITTKVWPS 80 (280)
T ss_pred CCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHeEEEeecCCc
Confidence 5679999999999853 23399999999999999999999999 9999997
Q ss_pred ------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCC--Cce
Q 024724 61 ------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH--PIT 96 (263)
Q Consensus 61 ------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~--~~~ 96 (263)
|++|++++++||||+||||||+.+.++++++.. .+.
T Consensus 81 ~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~ 160 (280)
T COG0656 81 DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPA 160 (280)
T ss_pred cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCc
Confidence 789999999999999999999999999998874 478
Q ss_pred EEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcc-cCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHH
Q 024724 97 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLA 175 (263)
Q Consensus 97 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 175 (263)
++|++||++.+. .+++++|+++||.+++|+||++|. +... +.+.+||
T Consensus 161 ~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~~l~~~------------------------------~~l~~Ia 208 (280)
T COG0656 161 VNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGGKLLDN------------------------------PVLAEIA 208 (280)
T ss_pred eEEEEeccCCCc--HHHHHHHHHcCCEEEEECCcccccccccC------------------------------hHHHHHH
Confidence 999999999995 459999999999999999999753 2211 4899999
Q ss_pred HHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCCc
Q 024724 176 KKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIEE 236 (263)
Q Consensus 176 ~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~~ 236 (263)
++||.|++|++|+|+++++ +++||.+++++|+++|++++++.||+|||++|+++.+...
T Consensus 209 ~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 209 KKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred HHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 9999999999999999999 9999999999999999999999999999999999987653
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.4e-44 Score=318.05 Aligned_cols=229 Identities=29% Similarity=0.421 Sum_probs=190.9
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-------CCchhHHHHh-------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-------QNANETLLGK------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-------~G~sE~~lG~------------- 60 (263)
.|++||+||||||+||. ..+.+++.++|+.|+++|||+||||+.|| .|.||..+|+
T Consensus 9 t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v~i 84 (346)
T PRK10625 9 SSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKLII 84 (346)
T ss_pred CCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceEEE
Confidence 47899999999999864 23678999999999999999999999998 4788887763
Q ss_pred ------------------------------------------------H----------------------------HHH
Q 024724 61 ------------------------------------------------I----------------------------GEM 64 (263)
Q Consensus 61 ------------------------------------------------~----------------------------~~l 64 (263)
+ ++|
T Consensus 85 ~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL 164 (346)
T PRK10625 85 ASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDAL 164 (346)
T ss_pred EcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHH
Confidence 2 578
Q ss_pred HHHHHcCCcCEEEcCCCCHHHHHHHhc------CCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCC
Q 024724 65 KKLVEEGKIKYIGLSEASPDTIRRAHG------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 138 (263)
Q Consensus 65 ~~l~~~Gkir~iGvs~~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 138 (263)
++|+++||||+||+|||+...+.+++. ...++++|++||++++..+.+++++|+++||++++|+||++|+|+++
T Consensus 165 ~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~ 244 (346)
T PRK10625 165 AEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGK 244 (346)
T ss_pred HHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCC
Confidence 889999999999999999988876543 23578899999999987767899999999999999999999999998
Q ss_pred CcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC
Q 024724 139 AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 218 (263)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 218 (263)
......+.+......+.|............+.++++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~ 324 (346)
T PRK10625 245 YLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHL 324 (346)
T ss_pred CCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccC
Confidence 43322222211111112222223456777899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhCC
Q 024724 219 KLTKEDLKEISDAVP 233 (263)
Q Consensus 219 ~Lt~e~~~~i~~~~~ 233 (263)
+||++++++|+++.+
T Consensus 325 ~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 325 TLSEEVLAEIEAVHQ 339 (346)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999874
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.1e-44 Score=318.81 Aligned_cols=230 Identities=24% Similarity=0.457 Sum_probs=189.9
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCC--CchhHHHHh------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ--NANETLLGK------------------ 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--G~sE~~lG~------------------ 60 (263)
.|++||+||||||+. ||...+.+++.++|+.|+++|||+||||+.||. |.||+++|+
T Consensus 21 tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK 97 (346)
T PRK09912 21 SGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTK 97 (346)
T ss_pred CCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEE
Confidence 378999999999973 333336678899999999999999999999995 899988876
Q ss_pred ----------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHH
Q 024724 61 ----------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRR 88 (263)
Q Consensus 61 ----------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~ 88 (263)
+++|++|+++||||+||+|||+++++++
T Consensus 98 ~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~ 177 (346)
T PRK09912 98 AGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQK 177 (346)
T ss_pred ecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Confidence 8999999999999999999999998876
Q ss_pred HhcC-----CCceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccc----cCCCCCC
Q 024724 89 AHGV-----HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILH----FFPRYKG 158 (263)
Q Consensus 89 ~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~----~~~~~~~ 158 (263)
+.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .|.+.... ..+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~~~~~~~~~~~~ 256 (346)
T PRK09912 178 MVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMHREGNKVRGLTP 256 (346)
T ss_pred HHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccccccccchhhhch
Confidence 5442 367899999999998754 57999999999999999999999999984322 12211110 0011221
Q ss_pred c-chhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhcc-CCCCCHHHHHHHHHhCCC
Q 024724 159 E-NLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSL-RIKLTKEDLKEISDAVPI 234 (263)
Q Consensus 159 ~-~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~-~~~Lt~e~~~~i~~~~~~ 234 (263)
. ..+..++..+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++ .++|+++++++|+++.+.
T Consensus 257 ~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 257 KMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 1 123456778899999999999999999999999999999999999999999999998 589999999999998754
No 7
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=9.3e-44 Score=309.90 Aligned_cols=214 Identities=19% Similarity=0.249 Sum_probs=185.5
Q ss_pred CCcccccceeccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh-------------
Q 024724 1 MVLQVSKLGLGCMNLSSG-------YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~------------- 60 (263)
|+++||+||||||+||+. |+. ++.+++.++|+.|+++|||+||||+.|| .||+++|+
T Consensus 1 ~~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 1 MSSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeecc
Confidence 799999999999999864 444 4889999999999999999999999997 69999996
Q ss_pred ----------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCC
Q 024724 61 ----------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHP 94 (263)
Q Consensus 61 ----------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 94 (263)
|++|++|+++||||+||+|||+++++.++....+
T Consensus 78 tk~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~ 157 (292)
T PRK14863 78 TVRADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARRFK 157 (292)
T ss_pred cccccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhcCC
Confidence 6899999999999999999999999988887788
Q ss_pred ceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHH
Q 024724 95 ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIEN 173 (263)
Q Consensus 95 ~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (263)
++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+. ...+....+.++.+
T Consensus 158 ~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~-------------~~~~~~~~~~~~~~ 222 (292)
T PRK14863 158 PDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA-------------QLKGASGRLSRVRR 222 (292)
T ss_pred CCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc-------------chhhhhHHHHHHHH
Confidence 9999999999999754 479999999999999999999999975311 0110 01123455677888
Q ss_pred HHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhC
Q 024724 174 LAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAV 232 (263)
Q Consensus 174 ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~ 232 (263)
+++++++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.++++..+++|..-.
T Consensus 223 ~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 223 MIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred HHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 99999999999999999999999999999999999999999999899998887776543
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5.3e-43 Score=308.72 Aligned_cols=217 Identities=27% Similarity=0.452 Sum_probs=186.8
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
.|++||.||||||++|+.|+. .+.+++.++|+.|+++|||+||||+.||.|.||+.+|+
T Consensus 7 t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~ 85 (314)
T PLN02587 7 TGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGR 85 (314)
T ss_pred CCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEecccc
Confidence 478999999999999876764 37889999999999999999999999999999999997
Q ss_pred ------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC
Q 024724 61 ------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 92 (263)
Q Consensus 61 ------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 92 (263)
|++|++|+++||||+||+|||+.+++..+.+.
T Consensus 86 ~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~ 165 (314)
T PLN02587 86 YGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDR 165 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHh
Confidence 78999999999999999999999888776543
Q ss_pred ---C--CceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHH
Q 024724 93 ---H--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNI 167 (263)
Q Consensus 93 ---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (263)
. .+..+|+.||++++.. .+++++|+++||++++|+||++|+|+++..+. +. ...+.....
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~~-~~~~~~~~~ 230 (314)
T PLN02587 166 VPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------WH-PAPPELKSA 230 (314)
T ss_pred hhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------CC-CCCHHHHHH
Confidence 2 2334678999887643 58999999999999999999999999873110 00 011345667
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccC----CCCCHHHHHHHHHhCC
Q 024724 168 YFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR----IKLTKEDLKEISDAVP 233 (263)
Q Consensus 168 ~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~----~~Lt~e~~~~i~~~~~ 233 (263)
.+.++++|+++|+|++|+||+|++++|.|++||+|+++++|+++|+++++ .+|+++++++|+++.+
T Consensus 231 ~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 231 CAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 78899999999999999999999999999999999999999999999975 3799999999999875
No 9
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.5e-43 Score=307.68 Aligned_cols=212 Identities=37% Similarity=0.635 Sum_probs=178.7
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------------
Q 024724 7 KLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------------- 60 (263)
Q Consensus 7 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------------- 60 (263)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||.|.||+++|+
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~ 77 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEP 77 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGG
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999753 458999999999999999999999999999999999998
Q ss_pred -----------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHH--hcCCCceE
Q 024724 61 -----------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRA--HGVHPITA 97 (263)
Q Consensus 61 -----------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~--~~~~~~~~ 97 (263)
|++|++|+++||||+||+|||+++.++++ ....++++
T Consensus 78 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 157 (283)
T PF00248_consen 78 DYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDV 157 (283)
T ss_dssp GSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESE
T ss_pred cccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999 55578899
Q ss_pred EeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCC-CCCCCcccccCCCCCCcchhhhHHHHHHHHHHHH
Q 024724 98 VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVE-SVPADSILHFFPRYKGENLDRNKNIYFRIENLAK 176 (263)
Q Consensus 98 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 176 (263)
+|++||++++....+++++|+++||++++|+||++|+|+++.... ..+....+ .......+.+.++++
T Consensus 158 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~a~ 226 (283)
T PF00248_consen 158 VQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADALRELAE 226 (283)
T ss_dssp EEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhhhhhhhh
Confidence 999999997777899999999999999999999999999883322 22111111 014566689999999
Q ss_pred HcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhC
Q 024724 177 KYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAV 232 (263)
Q Consensus 177 ~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~ 232 (263)
++|+|++|+||+|+++++.+.+||+|+++++|+++|+++++++||++++++|+++.
T Consensus 227 ~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 227 EHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999874
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.2e-43 Score=304.51 Aligned_cols=201 Identities=27% Similarity=0.510 Sum_probs=181.3
Q ss_pred CcccccceeccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh-------------------
Q 024724 2 VLQVSKLGLGCMNLSS--GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK------------------- 60 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~------------------- 60 (263)
|++||+||||||++|+ .||...+++++.++|+.|+++|||+||||+.||.|.+|+++|+
T Consensus 14 g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~R~~~~i~TK~g~~~ 93 (290)
T PRK10376 14 GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPYPDDLTIVTKVGARR 93 (290)
T ss_pred CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcCCCeEEEEeeecccC
Confidence 6889999999999985 3666557888999999999999999999999999999998875
Q ss_pred -----------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHH
Q 024724 61 -----------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIR 87 (263)
Q Consensus 61 -----------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~ 87 (263)
|++|++|+++||||+||+|||+.+.++
T Consensus 94 ~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~ 173 (290)
T PRK10376 94 GEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVA 173 (290)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHH
Confidence 589999999999999999999999999
Q ss_pred HHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHH
Q 024724 88 RAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNI 167 (263)
Q Consensus 88 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (263)
++.+..+++++|++||++++. ..+++++|+++||++++|+||+++.. . .
T Consensus 174 ~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~--------~----------------------~ 222 (290)
T PRK10376 174 EARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTP--------L----------------------Q 222 (290)
T ss_pred HHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCCh--------h----------------------h
Confidence 999888999999999999976 35799999999999999999974310 0 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 024724 168 YFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVP 233 (263)
Q Consensus 168 ~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~ 233 (263)
.+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 223 ~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 223 SSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 258999999999999999999999987778999999999999999999999999999999998764
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.7e-42 Score=300.12 Aligned_cols=211 Identities=39% Similarity=0.692 Sum_probs=189.9
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
.|++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||.|.||+.+|+
T Consensus 7 tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~ 83 (285)
T cd06660 7 TGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPR 83 (285)
T ss_pred CCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCC
Confidence 3789999999999987655 37899999999999999999999999999999999998
Q ss_pred ----------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC--
Q 024724 61 ----------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-- 92 (263)
Q Consensus 61 ----------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~-- 92 (263)
|++|++++++||||+||+|||+.+.+.++++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 163 (285)
T cd06660 84 PGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAG 163 (285)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999888
Q ss_pred CCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHH
Q 024724 93 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIE 172 (263)
Q Consensus 93 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (263)
.+++++|++||++++..+.+++++|+++||++++|+||++|.++++........ .......+.
T Consensus 164 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~-----------------~~~~~~~~~ 226 (285)
T cd06660 164 VPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP-----------------EGDLLEALK 226 (285)
T ss_pred CCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC-----------------hhhHHHHHH
Confidence 899999999999999866689999999999999999999999987632211110 011457899
Q ss_pred HHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHh
Q 024724 173 NLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDA 231 (263)
Q Consensus 173 ~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~ 231 (263)
.+++++++|++|+||+|++++|.+.++|+|+++++|+++|+++..++||+++++.|+++
T Consensus 227 ~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 227 EIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.4e-42 Score=293.72 Aligned_cols=196 Identities=29% Similarity=0.473 Sum_probs=177.3
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
.|.++|.||||||+. +++++..+++.|++.|++|||||..|+ +|+.+|+
T Consensus 11 ~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~RediFiTS 79 (300)
T KOG1577|consen 11 NGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKREDIFITS 79 (300)
T ss_pred CCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchhhheeee
Confidence 478999999999973 678999999999999999999999999 8999998
Q ss_pred -------------------------------------------------------------HHHHHHHHHcCCcCEEEcC
Q 024724 61 -------------------------------------------------------------IGEMKKLVEEGKIKYIGLS 79 (263)
Q Consensus 61 -------------------------------------------------------------~~~l~~l~~~Gkir~iGvs 79 (263)
|++|++++++|++|+||||
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVS 159 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVS 159 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeee
Confidence 9999999999999999999
Q ss_pred CCCHHHHHHHhcC--CCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCC
Q 024724 80 EASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYK 157 (263)
Q Consensus 80 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~ 157 (263)
||+..+++++++. .++.++|+++|++.+ +.+++++|+++||.+.||+||+++.- +. .-+.
T Consensus 160 NF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~---~ll~------------ 221 (300)
T KOG1577|consen 160 NFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS---DLLE------------ 221 (300)
T ss_pred cCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc---cccc------------
Confidence 9999999999987 566899999999888 67899999999999999999998631 00 0010
Q ss_pred CcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCCcc
Q 024724 158 GENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIEEV 237 (263)
Q Consensus 158 ~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~~~ 237 (263)
-+.+.+||++||.|++|++|||.++++ ++|||.++|++||+||++.+++.||++|++.|+....+.+.
T Consensus 222 ----------~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 222 ----------DPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred ----------CHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 158999999999999999999999999 99999999999999999999999999999999988877654
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.1e-42 Score=295.33 Aligned_cols=188 Identities=27% Similarity=0.429 Sum_probs=170.4
Q ss_pred cccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh----------------------
Q 024724 3 LQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK---------------------- 60 (263)
Q Consensus 3 ~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~---------------------- 60 (263)
++||.||||||++ +.+++.++|+.|++.|||+||||+.|| +|+.+|+
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~~ 69 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWIDN 69 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCCC
Confidence 4799999999986 346799999999999999999999999 7999887
Q ss_pred -----------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC---CCce
Q 024724 61 -----------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV---HPIT 96 (263)
Q Consensus 61 -----------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~---~~~~ 96 (263)
|++|++|+++||||+||+|||+.+++.++++. .+++
T Consensus 70 ~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~ 149 (267)
T PRK11172 70 LAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIA 149 (267)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCe
Confidence 89999999999999999999999999888764 3679
Q ss_pred EEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHH
Q 024724 97 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAK 176 (263)
Q Consensus 97 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 176 (263)
++|++||++++ +.+++++|+++||++++|+||++|.+... +.+.++|+
T Consensus 150 ~~Q~~~~~~~~--~~~ll~~~~~~gi~v~a~spl~~G~~~~~------------------------------~~l~~~a~ 197 (267)
T PRK11172 150 TNQIELSPYLQ--NRKVVAFAKEHGIHVTSYMTLAYGKVLKD------------------------------PVIARIAA 197 (267)
T ss_pred EEeeecCCCCC--cHHHHHHHHHCCCEEEEECCCCCCcccCC------------------------------HHHHHHHH
Confidence 99999999988 46899999999999999999999854321 36899999
Q ss_pred HcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCC
Q 024724 177 KYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIE 235 (263)
Q Consensus 177 ~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 235 (263)
++|+|++|+||+|+++++ .+||+|+++++|+++|+++++++||++++++|+++.++.
T Consensus 198 ~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 198 KHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNG 254 (267)
T ss_pred HhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCC
Confidence 999999999999999997 579999999999999999999999999999999998654
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.5e-39 Score=281.46 Aligned_cols=191 Identities=29% Similarity=0.400 Sum_probs=169.9
Q ss_pred CcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh---------------------
Q 024724 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--------------------- 60 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--------------------- 60 (263)
|+.||.||||||++ +.+++.++|+.|++.|+|+||||+.|| +|+.+|+
T Consensus 12 g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~tK~~~~ 80 (275)
T PRK11565 12 GNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFITTKLWND 80 (275)
T ss_pred CCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEEEEecCc
Confidence 78899999999976 467899999999999999999999998 7888886
Q ss_pred ---------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCC--CceEEe
Q 024724 61 ---------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH--PITAVQ 99 (263)
Q Consensus 61 ---------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~--~~~~~q 99 (263)
|++|++|+++||||+||+|||+.+++++++... .+.++|
T Consensus 81 ~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q 160 (275)
T PRK11565 81 DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ 160 (275)
T ss_pred chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeee
Confidence 889999999999999999999999999887553 467899
Q ss_pred ccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcC
Q 024724 100 MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYK 179 (263)
Q Consensus 100 ~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 179 (263)
++||++.+ +.+++++|+++||.+++|+||++|. . . .+. .+.|.++|+++|
T Consensus 161 ~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~---~----~-----------~~~----------~~~l~~ia~~~g 210 (275)
T PRK11565 161 IELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGG---K----G-----------VFD----------QKVIRDLADKYG 210 (275)
T ss_pred eecCCccc--hHHHHHHHHHCCCEEEEEccCCCCC---c----c-----------ccc----------CHHHHHHHHHhC
Confidence 99999988 4679999999999999999999762 1 0 000 147999999999
Q ss_pred CCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCC
Q 024724 180 CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIE 235 (263)
Q Consensus 180 ~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 235 (263)
+|++|+||+|+++++ .++|+|+++++|+++|+++++++||++++++|+++..+.
T Consensus 211 ~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 211 KTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred CCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 999999999999997 569999999999999999999999999999999997654
No 15
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4e-37 Score=264.87 Aligned_cols=205 Identities=26% Similarity=0.391 Sum_probs=185.2
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
.|.++|.||||||++...|...+|.+.+.++|+.|+++||||||||..|..|.||..+|+
T Consensus 9 ~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~ 88 (391)
T COG1453 9 TGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWP 88 (391)
T ss_pred CCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCcc
Confidence 367899999999999877766779999999999999999999999999988899999999
Q ss_pred --------------------------------------------HHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCc
Q 024724 61 --------------------------------------------IGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPI 95 (263)
Q Consensus 61 --------------------------------------------~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~ 95 (263)
++.+++++++||||++|+|.| +.+.+.++++..++
T Consensus 89 ~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~ 168 (391)
T COG1453 89 VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPW 168 (391)
T ss_pred ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCCc
Confidence 889999999999999999999 66788999999999
Q ss_pred eEEeccCCCcccchh--hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHH
Q 024724 96 TAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIEN 173 (263)
Q Consensus 96 ~~~q~~~n~~~~~~~--~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (263)
|++|++||.++..-. .+.+++|.++|++++.++|+.+|-|..+ +| +++.+
T Consensus 169 dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP-----------------------~~~~~ 220 (391)
T COG1453 169 DFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP-----------------------EKLEE 220 (391)
T ss_pred ceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC-----------------------HHHHH
Confidence 999999999998643 4899999999999999999999876643 11 58999
Q ss_pred HHHHcC--CCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC--C-CCHHHHHHHHHhCC
Q 024724 174 LAKKYK--CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI--K-LTKEDLKEISDAVP 233 (263)
Q Consensus 174 ia~~~g--~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~--~-Lt~e~~~~i~~~~~ 233 (263)
|+++++ .||++.|+||++++|.|+++++|+++++|++||++.++. + ||++|+..|.++.+
T Consensus 221 l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~ 285 (391)
T COG1453 221 LCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEE 285 (391)
T ss_pred HHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHH
Confidence 999986 689999999999999999999999999999999999954 4 99999988887653
No 16
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=248.47 Aligned_cols=208 Identities=26% Similarity=0.442 Sum_probs=184.2
Q ss_pred CcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh---------------------
Q 024724 2 VLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--------------------- 60 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--------------------- 60 (263)
|+.+|+|.+|+|++.. |+ .+..+..++++.+++.||++||.|+.||.+++|.++|+
T Consensus 10 ~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieivsKCGI~ 86 (298)
T COG4989 10 GLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIVSKCGIR 86 (298)
T ss_pred CccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEeeeccccc
Confidence 5789999999999954 43 36789999999999999999999999999999999999
Q ss_pred ----------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHH
Q 024724 61 ----------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRR 88 (263)
Q Consensus 61 ----------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~ 88 (263)
.+|+..|+++||||++|||||++.+++-
T Consensus 87 ~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~L 166 (298)
T COG4989 87 LPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFEL 166 (298)
T ss_pred cccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHH
Confidence 7899999999999999999999999876
Q ss_pred HhcC--CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhH
Q 024724 89 AHGV--HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNK 165 (263)
Q Consensus 89 ~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (263)
+.+. .++.+||++.|+++.. ...+.+++|+.+.|..++||||++|-+...+ ....
T Consensus 167 L~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------------~~~q 224 (298)
T COG4989 167 LQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------------DKFQ 224 (298)
T ss_pred HHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC----------------------cchH
Confidence 6665 4468999999999876 4478999999999999999999988432211 1234
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 024724 166 NIYFRIENLAKKYK-CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 234 (263)
Q Consensus 166 ~~~~~l~~ia~~~g-~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~ 234 (263)
+...+|..||+++| +|.++++++|++.+|.-..||+|+.+++++++.++|.++.||.++|-+|-.+..+
T Consensus 225 ~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 225 RLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 56679999999999 7999999999999999999999999999999999999999999999999887654
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.5e-36 Score=246.37 Aligned_cols=238 Identities=22% Similarity=0.303 Sum_probs=198.9
Q ss_pred CCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------- 60 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------- 60 (263)
.|++||+||||+..+|..|+.. ++++....|.+|+++|||+|||++.||+++||..+|.
T Consensus 30 tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~ 108 (342)
T KOG1576|consen 30 TGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYE 108 (342)
T ss_pred CcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeecc
Confidence 4899999999999999999985 7888888888899999999999999999999999998
Q ss_pred ---------------------------------------------------HHHHHHHHHcCCcCEEEcCCCCHHHHHHH
Q 024724 61 ---------------------------------------------------IGEMKKLVEEGKIKYIGLSEASPDTIRRA 89 (263)
Q Consensus 61 ---------------------------------------------------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~ 89 (263)
+.+|+++|++||||+||++.++.+.+.++
T Consensus 109 ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ 188 (342)
T KOG1576|consen 109 LDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTEC 188 (342)
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHH
Confidence 89999999999999999999999999999
Q ss_pred hcC--CCceEEe--ccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhH
Q 024724 90 HGV--HPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNK 165 (263)
Q Consensus 90 ~~~--~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (263)
++. ..++++. ++|++.+.. ....+++.+..|++|++-++++.|+|+....++..| ..++..
T Consensus 189 ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHP--------------aS~Elk 253 (342)
T KOG1576|consen 189 AERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHP--------------ASDELK 253 (342)
T ss_pred HhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCC--------------CCHHHH
Confidence 887 4467776 688887765 357888888999999999999999999875443333 235677
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCCccCCCCCccc
Q 024724 166 NIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIEEVAGDRDPEG 245 (263)
Q Consensus 166 ~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~~~~~~~~~~~ 245 (263)
+...+-.++|++.|+.++.+|+.|.++.+++.++++|+++.++++.|+++....||..+-.+..+..++ ..+.
T Consensus 254 ~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~-------~~~~ 326 (342)
T KOG1576|consen 254 EAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILRE-------ILKE 326 (342)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHH-------Hhhh
Confidence 788899999999999999999999999999999999999999999999986667887333333333321 1222
Q ss_pred ccccccccccCCCCCC
Q 024724 246 FDKASWTFANTPPKDC 261 (263)
Q Consensus 246 ~~~~~~~~~~~~~~~~ 261 (263)
-.++.|++....++|.
T Consensus 327 ~kn~~W~g~~~~~yw~ 342 (342)
T KOG1576|consen 327 TKNEEWEGGILHPYWI 342 (342)
T ss_pred hccCCCCCCCCccccC
Confidence 3467788877777763
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00015 Score=60.21 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCC--CceEEeccCCCcccchhhhhHHHHHHhCCceeecc
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~ 128 (263)
|+.|++++.+|||..+|+|.|+..+++++.+.. .+.++|+...-...-+ .++.++|.+++|.+...+
T Consensus 159 wk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 159 WKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 999999999999999999999999999998874 4578888777655433 589999999999987653
No 19
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.58 E-value=2.8 Score=34.67 Aligned_cols=87 Identities=17% Similarity=0.334 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcC-CCceEEecc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGV-HPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~-~~~~~~q~~ 101 (263)
+.+++.++.+..++.|++.+...-. ++.. ++.+++++++..=-.||..+- +.++++++.+. ..| +..
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~-----t~~a---~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~F--ivs- 86 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLR-----TPVA---LDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQF--IVS- 86 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCC-----CccH---HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCE--EEC-
Confidence 7899999999999999999997642 2222 344555665543367898875 88888888875 333 322
Q ss_pred CCCcccchhhhhHHHHHHhCCceee
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
+....+++++|+++||.++.
T Consensus 87 -----P~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 87 -----PGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred -----CCCCHHHHHHHHHcCCcEEC
Confidence 22246899999999998876
No 20
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.68 E-value=3.7 Score=33.86 Aligned_cols=87 Identities=9% Similarity=0.207 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcC-CCceEEecc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGV-HPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~-~~~~~~q~~ 101 (263)
+.+++.++++..++.|++.+.-.-.- +.. ++.+++++++..=-.||..+- +.++++++.+. ..| +.
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t-----p~a---~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~F--iv-- 81 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT-----PAA---LDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRF--IV-- 81 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-----ccH---HHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCE--EE--
Confidence 78999999999999999999976432 222 344555665543356888775 88888888775 333 22
Q ss_pred CCCcccchhhhhHHHHHHhCCceee
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
++ ....+++++|+++||.++.
T Consensus 82 -SP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -SP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred -CC---CCCHHHHHHHHHcCCCEeC
Confidence 22 2246899999999998875
No 21
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=88.21 E-value=4.4 Score=34.63 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=70.3
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhH-HHHhHHHHHHHHHcCCcCEEEcCCCCHHH
Q 024724 7 KLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANET-LLGKIGEMKKLVEEGKIKYIGLSEASPDT 85 (263)
Q Consensus 7 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~-~lG~~~~l~~l~~~Gkir~iGvs~~~~~~ 85 (263)
+||+-|..+ ......+.++.+-+.|++.++....+..-..+. ....++.+.++.++--++-.+++...
T Consensus 2 ~lg~~t~~~--------~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~--- 70 (275)
T PRK09856 2 KTGMFTCGH--------QRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET--- 70 (275)
T ss_pred ceeeeehhh--------eeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcc---
Confidence 455655544 223577889999999999999753322100011 01123444444433222222222100
Q ss_pred HHHHhcCCCceEEeccCCCcccch---------hhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCC
Q 024724 86 IRRAHGVHPITAVQMEWSLWTRDI---------EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRY 156 (263)
Q Consensus 86 l~~~~~~~~~~~~q~~~n~~~~~~---------~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~ 156 (263)
....+|+..... -...+++|+..|...+...|...|... +
T Consensus 71 ------------~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~--------~----------- 119 (275)
T PRK09856 71 ------------NGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT--------P----------- 119 (275)
T ss_pred ------------cCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC--------C-----------
Confidence 011233322211 146789999999999877664433100 0
Q ss_pred CCcchhhhHHHHHHHHHHHHHcCCC
Q 024724 157 KGENLDRNKNIYFRIENLAKKYKCT 181 (263)
Q Consensus 157 ~~~~~~~~~~~~~~l~~ia~~~g~s 181 (263)
.....+...+.++.+.++|+++|++
T Consensus 120 ~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 120 PNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 0123356677788889999998864
No 22
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=85.27 E-value=23 Score=30.41 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC--CCceEEec
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQM 100 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~q~ 100 (263)
+.+.+.+....-.+.|..++|.--.... |.-..+ ...++.+++.-. .-+-+-+++++.++++++. ...-+|-
T Consensus 23 d~~~i~~~A~~~~~~GAdiIDVg~~~~~---~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iINs- 97 (261)
T PRK07535 23 DAAFIQKLALKQAEAGADYLDVNAGTAV---EEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLINS- 97 (261)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCc---hhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEEe-
Confidence 4445555555567889999998654331 221222 134444544322 2378889999999999986 3222332
Q ss_pred cCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCC
Q 024724 101 EWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC 180 (263)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 180 (263)
-|..... ...+++.++++|..++....-..|. |. ..+...+.++.+.+.+.++|+
T Consensus 98 -Is~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P~-------------t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 98 -VSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------PK-------------DAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred -CCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------CC-------------CHHHHHHHHHHHHHHHHHcCC
Confidence 2222211 3478999999999998754322331 10 112335566677778889998
Q ss_pred CHHHHH
Q 024724 181 TSAQLA 186 (263)
Q Consensus 181 s~~q~a 186 (263)
++.++.
T Consensus 153 ~~~~Ii 158 (261)
T PRK07535 153 PPEDIY 158 (261)
T ss_pred CHhHEE
Confidence 887754
No 23
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.10 E-value=11 Score=31.47 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCC---cCEEEcCCC-CHHHHHHHhcC-CCceEE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGK---IKYIGLSEA-SPDTIRRAHGV-HPITAV 98 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gk---ir~iGvs~~-~~~~l~~~~~~-~~~~~~ 98 (263)
+.+++.++.+..++.|++.+.-.-. ++.. ++.+++++++-. =-.||..+- +.++++++.+. ..|-+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~-----~~~a---~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYT-----NPFA---SEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECC-----CccH---HHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-
Confidence 7899999999999999999997743 2222 345555655421 136888775 88889888876 34422
Q ss_pred eccCCCcccchhhhhHHHHHHhCCceee
Q 024724 99 QMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 99 q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
++ ....+++++|+++||.++.
T Consensus 94 ----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 94 ----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred ----CC---CCCHHHHHHHHHcCCCEEC
Confidence 22 2347899999999998876
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=84.89 E-value=9.7 Score=32.64 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=65.4
Q ss_pred HHHHHHcCCcCEEEc-CCCCHHHHHHHhcCCCce--EEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCc
Q 024724 64 MKKLVEEGKIKYIGL-SEASPDTIRRAHGVHPIT--AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 140 (263)
Q Consensus 64 l~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~--~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~ 140 (263)
|.+-.++|+. -+|+ .......+.+++....+| ++-.+..+++...-..++..|+..|+..+..-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444455774 4553 333334555555554444 555688888776457788888888988777655332
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC
Q 024724 141 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 218 (263)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 218 (263)
...+..+|..+...+++|-..+.+|.++.+++..+
T Consensus 81 -------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 -------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred -------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12455666777777777788888888877776665
No 25
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=84.56 E-value=5.9 Score=32.53 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcC-CCceEEecc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGV-HPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~-~~~~~~q~~ 101 (263)
+.+++.++++..++.|++.+.-...-. .+. +.++.++++-.=-.+|+.+- +.++++++++. ..|-+.
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t~--~a~------~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS--- 86 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRTP--NAL------EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS--- 86 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTST--THH------HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE---
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCc--cHH------HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC---
Confidence 778999999999999999999774322 122 33344443322256898775 88888888775 344221
Q ss_pred CCCcccchhhhhHHHHHHhCCceee
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
+....+++++|+++|+.++.
T Consensus 87 -----P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 87 -----PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp -----SS--HHHHHHHHHHTSEEEE
T ss_pred -----CCCCHHHHHHHHHcCCcccC
Confidence 12246899999999999886
No 26
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=84.17 E-value=6.5 Score=28.52 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=50.8
Q ss_pred eccccCCCCCCCCCCHHHHHHHHHHHHHcCCC---------eEecc-------CCcCCCchhHHHHhHHHHHHHHHcCCc
Q 024724 10 LGCMNLSSGYSSPVSEEDGISMIKHAFSKGIT---------FFDTA-------DVYGQNANETLLGKIGEMKKLVEEGKI 73 (263)
Q Consensus 10 lGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~---------~~DTA-------~~Yg~G~sE~~lG~~~~l~~l~~~Gki 73 (263)
|||.++ -.+++.++..+-|+..++.|.+ +++|. +++|..+...+|.++++..+......|
T Consensus 3 ~~t~sy----lp~lt~~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YV 78 (99)
T cd03527 3 FETFSY----LPPLTDEQIAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYV 78 (99)
T ss_pred cccccc----CCCCCHHHHHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeE
Confidence 566664 5567889999999999999854 23332 334445567888888888888888899
Q ss_pred CEEEcCCCC
Q 024724 74 KYIGLSEAS 82 (263)
Q Consensus 74 r~iGvs~~~ 82 (263)
|-+|+.+..
T Consensus 79 RliG~D~~~ 87 (99)
T cd03527 79 RVVGFDNYK 87 (99)
T ss_pred EEEEEeCCc
Confidence 999998863
No 27
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=83.97 E-value=6.6 Score=32.66 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=58.6
Q ss_pred CCHHHHHHHhcCCCceEEec----cCCCcccch---hhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccC
Q 024724 81 ASPDTIRRAHGVHPITAVQM----EWSLWTRDI---EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFF 153 (263)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~q~----~~n~~~~~~---~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~ 153 (263)
.++.+++.+.+...+.++-+ +||.++..- ..++..+++..|-.-+..-||..|-..+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~--------------- 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT--------------- 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------------
Confidence 46778888887766654433 777777642 16899999999999999999998632222
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 024724 154 PRYKGENLDRNKNIYFRIENLAKKYKCT 181 (263)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s 181 (263)
..........+++|+.|.+++|++
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCcc
Confidence 011245678889999999999864
No 28
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.61 E-value=18 Score=30.33 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHH-HHHHcCCcCEEEcCCC-CHHHHHHHhcC-CCceEEec
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMK-KLVEEGKIKYIGLSEA-SPDTIRRAHGV-HPITAVQM 100 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~-~l~~~Gkir~iGvs~~-~~~~l~~~~~~-~~~~~~q~ 100 (263)
+.+++.++++..++.|++.+.-...-. .+.+. ++.|. +..++.-=-.+|+.+. +.++++.+++. ..| +.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp--~a~~~---i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F--iV- 96 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD--FAHEV---FAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF--IV- 96 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC--cHHHH---HHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE--EE-
Confidence 789999999999999999999874222 12222 23332 2223322236888775 88888888775 333 22
Q ss_pred cCCCcccchhhhhHHHHHHhCCceee
Q 024724 101 EWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
+ +....+++++|+++||.++.
T Consensus 97 --s---P~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 97 --T---PLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred --C---CCCCHHHHHHHHHcCCCEeC
Confidence 1 22246899999999998875
No 29
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=81.80 E-value=17 Score=31.31 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=65.5
Q ss_pred HHHHHHcCCcCEEEc-CCCCHHHHHHHhcCCCce--EEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCc
Q 024724 64 MKKLVEEGKIKYIGL-SEASPDTIRRAHGVHPIT--AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 140 (263)
Q Consensus 64 l~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~--~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~ 140 (263)
|.+..++|+.- +|. .......+.+++....+| ++-.+..+++......++..++..|+..+..-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 44444557753 443 334334455555544455 456688888876556788888888887766554221
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC
Q 024724 141 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 218 (263)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 218 (263)
...+..+|..+.-.+++|-..|.++.++.+++..+
T Consensus 80 -------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12456677777777788888888888888877766
No 30
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.61 E-value=17 Score=30.24 Aligned_cols=87 Identities=14% Similarity=0.256 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcC-CCceEEecc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGV-HPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~-~~~~~~q~~ 101 (263)
+.+++.++.+...+.|++.+.-.-... .- ++.+++++++.-=..||..+- +.++++.+.+. ..|-+ .+
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~-----~~---~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv--sP 94 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTP-----AA---LEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV--SP 94 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc-----cH---HHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE--CC
Confidence 789999999999999999999873222 11 345566665533366888765 66777777765 33322 21
Q ss_pred CCCcccchhhhhHHHHHHhCCceee
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
....++++.|++++|.++.
T Consensus 95 ------~~~~~vi~~a~~~~i~~iP 113 (212)
T PRK05718 95 ------GLTPPLLKAAQEGPIPLIP 113 (212)
T ss_pred ------CCCHHHHHHHHHcCCCEeC
Confidence 1135899999999988774
No 31
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=79.99 E-value=19 Score=30.66 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=62.7
Q ss_pred HHHHHcCCcCEEEc-CCCCHHHHHHHhcCCCce--EEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcC
Q 024724 65 KKLVEEGKIKYIGL-SEASPDTIRRAHGVHPIT--AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 141 (263)
Q Consensus 65 ~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~--~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~ 141 (263)
.+-.++|+. .+|+ .+.....+.+++....+| ++-.+..+++...-..++..++..|+..+..-|-..
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~--------- 73 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE--------- 73 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC---------
Confidence 344445764 3443 334334555555554454 555588888775446788888888887776554331
Q ss_pred CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC
Q 024724 142 ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 218 (263)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 218 (263)
...++.+|..+...+++|-..|.++.++.+++..+
T Consensus 74 ------------------------------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ------------------------------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ------------------------------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12445566667667777777777777777766655
No 32
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=79.72 E-value=7.5 Score=29.70 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=55.7
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCC----eEeccC------------CcCCCchhHHHHhHHHHHHHHHc
Q 024724 7 KLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGIT----FFDTAD------------VYGQNANETLLGKIGEMKKLVEE 70 (263)
Q Consensus 7 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~----~~DTA~------------~Yg~G~sE~~lG~~~~l~~l~~~ 70 (263)
+|-|||.++ -.+++.++..+-|+.+++.|-+ |-|... ++|.-++..+|.++++..+..-.
T Consensus 2 r~~~eTfSy----LPpLTdeqI~kQI~Y~i~~GW~p~iEft~~~~~~~~YW~MWkLPMFg~tD~~~Vl~Ei~~CrkayP~ 77 (138)
T CHL00130 2 RLTQGTFSF----LPDLTDQQIEKQIQYAISKGWALNVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMFEINECRKQKPN 77 (138)
T ss_pred ceeeceecc----CCCCCHHHHHHHHHHHHhcCCeEEEEecCCCCcCccEEeeeCCccCCCCCHHHHHHHHHHHHHHCCC
Confidence 466888875 5677999999999999999843 444432 33345677888888888888888
Q ss_pred CCcCEEEcCCCCH
Q 024724 71 GKIKYIGLSEASP 83 (263)
Q Consensus 71 Gkir~iGvs~~~~ 83 (263)
..||-+|+.|...
T Consensus 78 ~yIRl~gFDn~rq 90 (138)
T CHL00130 78 GYIKVNAFDASRG 90 (138)
T ss_pred cEEEEEEeeCCCc
Confidence 9999999988754
No 33
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=79.51 E-value=27 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhh
Q 024724 169 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNID 214 (263)
Q Consensus 169 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~ 214 (263)
.+|.++|++.+. ++.++-..|+.... ...+..|+|+|+.+-+.+-
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHHH
Confidence 588999999874 68999999986554 4888999999997765543
No 34
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=79.40 E-value=28 Score=28.75 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeccCCc-----CCCchhHHHHh-HHHHHHHHH--cCCcCEEEcCCCCHHHHHHHhcCCCce
Q 024724 25 EEDGISMIKHAFSKGITFFDTADVY-----GQNANETLLGK-IGEMKKLVE--EGKIKYIGLSEASPDTIRRAHGVHPIT 96 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~DTA~~Y-----g~G~sE~~lG~-~~~l~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~ 96 (263)
.+++.+-....++.|-.++|--... ..-..|+.+-+ ...++.+++ .+. -+.+-+++++.++++++. ..+
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~ 94 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GAD 94 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-Ccc
Confidence 3445555666778999999985322 22233444444 345555554 233 567778899999999887 444
Q ss_pred EEeccCCCcccchhhhhHHHHHHhCCceeecccC
Q 024724 97 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 97 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l 130 (263)
++-.-.+. .. ..++++.+++++..++.+..-
T Consensus 95 ~ind~~~~-~~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 95 IINDISGF-ED--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEETTTT-SS--STTHHHHHHHHTSEEEEESES
T ss_pred eEEecccc-cc--cchhhhhhhcCCCEEEEEecc
Confidence 33222221 11 468999999999999987655
No 35
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=79.20 E-value=6.4 Score=28.53 Aligned_cols=69 Identities=13% Similarity=0.270 Sum_probs=46.9
Q ss_pred eccccCCCCCCCCCCHHHHHHHHHHHHHcCCCe----Ee------------ccCCcCCCchhHHHHhHHHHHHHHHcCCc
Q 024724 10 LGCMNLSSGYSSPVSEEDGISMIKHAFSKGITF----FD------------TADVYGQNANETLLGKIGEMKKLVEEGKI 73 (263)
Q Consensus 10 lGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~----~D------------TA~~Yg~G~sE~~lG~~~~l~~l~~~Gki 73 (263)
|+|.++ -.+++.++..+-|+..+..|.+. -| +.++++.+....+++++++.........|
T Consensus 2 ~et~S~----lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~~yV 77 (99)
T PF00101_consen 2 FETFSY----LPPLTDEEIAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPGEYV 77 (99)
T ss_dssp -STTTT----SS---HHHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTTSEE
T ss_pred Cccccc----CCCCCHHHHHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCCceE
Confidence 456553 45567889999999999998543 22 33444445667788878777777788899
Q ss_pred CEEEcCCCC
Q 024724 74 KYIGLSEAS 82 (263)
Q Consensus 74 r~iGvs~~~ 82 (263)
|-||+.+..
T Consensus 78 Rlig~D~~~ 86 (99)
T PF00101_consen 78 RLIGFDNKR 86 (99)
T ss_dssp EEEEEETTT
T ss_pred EEEEEcCcc
Confidence 999998764
No 36
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.07 E-value=16 Score=32.01 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.+++.++++..-+.|+.+|+-. +. . -.++.+.+|++...+. +.|=+-++...++++++...++++|+.-
T Consensus 189 ~~~~A~~~~~~l~~~~l~~iEeP--~~---~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~ 259 (316)
T cd03319 189 TPEEAVELLRELAELGVELIEQP--VP---A----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKL 259 (316)
T ss_pred CHHHHHHHHHHHHhcCCCEEECC--CC---C----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 34455555555555555555421 11 0 0166788888877666 3344557889999999999999999876
Q ss_pred CCcc-cchhhhhHHHHHHhCCceeecccCcCc
Q 024724 103 SLWT-RDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 103 n~~~-~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
+.+- -..-.++...|+++|+.++..+-+..+
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 6532 112368899999999999886555443
No 37
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=76.23 E-value=1.3 Score=39.77 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=35.7
Q ss_pred CCcCEEEcCCCCHHHHHHHhcCCC-ceEEeccCCCcccchhhhhHHHHHHhCCc
Q 024724 71 GKIKYIGLSEASPDTIRRAHGVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 123 (263)
Q Consensus 71 Gkir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 123 (263)
|+|||+||--++.+.+.++..... -++.+.+..++....+..+++.+++.||.
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 899999999999999998877643 23444444443333345666666666664
No 38
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=76.13 E-value=39 Score=28.76 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.+++.++++..-+.|+.+|+-.- . . ..++.+.++++.-.+. +.|=+-++...+.++++...++++|+..
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEeP~--~---~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~ 211 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQPL--P---A----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKT 211 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEECCC--C---c----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 456666666666566666665321 1 0 1156677788775555 3444556888899998888899999876
Q ss_pred CCccc-chhhhhHHHHHHhCCceeecccCcCc
Q 024724 103 SLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 103 n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
+..-- ..-.++...|+++|+.++..+.+.++
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 65432 12368899999999999887665544
No 39
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=75.97 E-value=49 Score=28.80 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHhhcCCCceeeccCCCcHHHHHHhh
Q 024724 169 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 213 (263)
Q Consensus 169 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl 213 (263)
.+|.++|+++|. ++.++-..|+-... ...+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHHHHHHH
Confidence 589999999884 68999999987665 378999999999876554
No 40
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.66 E-value=50 Score=28.16 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcC-CCc----hhHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYG-QNA----NETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITA 97 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~----sE~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 97 (263)
+.+.+.+....-++.|..++|--.... +|. .+.-+.+ ...++.+++.-++ -+.+-+++++.++++++....-+
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~iI 100 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGADII 100 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCCEE
Confidence 667777777888899999999753322 221 2222222 2455555554233 37889999999999998763222
Q ss_pred EeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHH
Q 024724 98 VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKK 177 (263)
Q Consensus 98 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~ 177 (263)
|- .+.... ..++++.++++|..++.+..-..|.-. +.. +.| +...++..+.++...+.+.+
T Consensus 101 Nd--is~~~~--~~~~~~l~~~~~~~vV~m~~~~~~~~~-----~~~---------~~~-~~~~~~~~~~~~~~i~~~~~ 161 (258)
T cd00423 101 ND--VSGGRG--DPEMAPLAAEYGAPVVLMHMDGTPQTM-----QNN---------PYY-ADVVDEVVEFLEERVEAATE 161 (258)
T ss_pred Ee--CCCCCC--ChHHHHHHHHcCCCEEEECcCCCCccc-----ccC---------CCc-chHHHHHHHHHHHHHHHHHH
Confidence 22 233221 157899999999999887643322100 000 111 11233445566666667777
Q ss_pred cCCCHHHHH
Q 024724 178 YKCTSAQLA 186 (263)
Q Consensus 178 ~g~s~~q~a 186 (263)
.|+++.++.
T Consensus 162 ~Gi~~~~Ii 170 (258)
T cd00423 162 AGIPPEDII 170 (258)
T ss_pred cCCCHHHEE
Confidence 887665543
No 41
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=73.15 E-value=59 Score=27.83 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccC-CcCCC----chhHHHHhH-HHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCce
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTAD-VYGQN----ANETLLGKI-GEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPIT 96 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg~G----~sE~~lG~~-~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~ 96 (263)
.+.+++.+.....++.|..++|-.. .-.+| ..|+.+-++ ..++.+++.-.+- +.+-+++++.++++++...--
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~i 99 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGADI 99 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCCE
Confidence 4677788888888899999999842 11111 223334432 3455555553333 788899999999999875222
Q ss_pred EEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHH
Q 024724 97 AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAK 176 (263)
Q Consensus 97 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 176 (263)
+| ..+.... ..++++.++++|..++.+.. .|. +.... ..+.| ..........+++.-+.|.
T Consensus 100 IN--disg~~~--~~~~~~l~~~~~~~vV~m~~--~g~------p~~~~------~~~~~-~~~~~~~~~~~~~~i~~~~ 160 (257)
T cd00739 100 IN--DVSGGSD--DPAMLEVAAEYGAPLVLMHM--RGT------PKTMQ------ENPYY-EDVVDEVLSFLEARLEAAE 160 (257)
T ss_pred EE--eCCCCCC--ChHHHHHHHHcCCCEEEECC--CCC------Ccccc------cCCCc-ccHHHHHHHHHHHHHHHHH
Confidence 23 2233322 15789999999999998543 221 00000 00111 1122344555667777888
Q ss_pred HcCCCHHHHH
Q 024724 177 KYKCTSAQLA 186 (263)
Q Consensus 177 ~~g~s~~q~a 186 (263)
++|++..++.
T Consensus 161 ~~Gi~~~~Ii 170 (257)
T cd00739 161 SAGVARNRII 170 (257)
T ss_pred HcCCCHHHEE
Confidence 8888765543
No 42
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.75 E-value=35 Score=28.81 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHH-HHhHHHHHHHHHcC-CcCEEEcCCCCHHHHHHHhcCCCceEEec
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETL-LGKIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~-lG~~~~l~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~q~ 100 (263)
++.++..++++...+.|+..++...-=... .... -..++.++++.+.+ .++...++.-....++.+.+.. ++.+++
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~-~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPK-AVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCcc-ccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 478999999999999999999975221100 0000 11267788888888 5666676655566676666653 556666
Q ss_pred cCCCcc--------cch------hhhhHHHHHHhCCceeecc
Q 024724 101 EWSLWT--------RDI------EEEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 101 ~~n~~~--------~~~------~~~~~~~~~~~gi~v~a~~ 128 (263)
.+..-+ +.. -...++.+++.|+.+...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 554431 111 1567888899998776554
No 43
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=71.63 E-value=41 Score=30.07 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeccC---------CcCCCchhHHHHhHHHHHHHHHc-CCcCEEEcC---CCCHHHH
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTAD---------VYGQNANETLLGKIGEMKKLVEE-GKIKYIGLS---EASPDTI 86 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~---------~Yg~G~sE~~lG~~~~l~~l~~~-Gkir~iGvs---~~~~~~l 86 (263)
+..++.++..++++..-++|+..|+... .||.. ....++.++.+.+. ...+...+. ..+.+.+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~----~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFG----AHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCC----CCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHH
Confidence 3445889999999999999999999952 12211 01124555555433 334444433 2256677
Q ss_pred HHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeec
Q 024724 87 RRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 87 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
+.+.+. .++++.+..+.-+...-.+.+++++++|..+...
T Consensus 95 ~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 666654 4556555444333322367888999999876654
No 44
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=71.05 E-value=68 Score=27.67 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYG 50 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 50 (263)
+.+.+.++++...+.|...+.-.--|.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfS 55 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFS 55 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 789999999999999999998764443
No 45
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.83 E-value=49 Score=28.13 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=59.3
Q ss_pred HHHHHHcCCcCEEEc--CCCCHHHHHHHhcC-CCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCCc
Q 024724 64 MKKLVEEGKIKYIGL--SEASPDTIRRAHGV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 140 (263)
Q Consensus 64 l~~l~~~Gkir~iGv--s~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~ 140 (263)
|.+..++|+. -+|+ ..-++..++.+... .++.++-++.++++......++..++..|..++..-|-.
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~--------- 72 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIG--------- 72 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCC---------
Confidence 3445556875 3443 33344444444433 333455557777665433456666666676655543211
Q ss_pred CCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC
Q 024724 141 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 218 (263)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 218 (263)
++ .-++.++..+.-.+++|-..+++++++.+++..+
T Consensus 73 ----------------------------------------~~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 73 ----------------------------------------DP--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ----------------------------------------CH--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 11 1456677777767778888888888877777664
No 46
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=69.63 E-value=76 Score=27.65 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHhhcCCCceeeccCCCcHHHHHHhh
Q 024724 169 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 213 (263)
Q Consensus 169 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl 213 (263)
.+|.++|++.+. ++.++-..|+.... ...+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 588999999874 68888889987654 488899999999876654
No 47
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=69.14 E-value=1.6e+02 Score=31.28 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.+.+.+....-++.|..++|.-.....-..|+.+-+ +..++.+.+.-+ --|-+-+.+++.++.+++..+=..+-...
T Consensus 382 d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~-vPlsIDS~~~~ViEaaLk~~~G~~IINSI 460 (1229)
T PRK09490 382 DYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIAR-VPIMIDSSKWEVIEAGLKCIQGKGIVNSI 460 (1229)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCC-ceEEEeCCcHHHHHHHHhhcCCCCEEEeC
Confidence 4445555666667889999998754432233444443 222322222111 23667788999999999873211222234
Q ss_pred CCcc--cchhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHH-HcC
Q 024724 103 SLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAK-KYK 179 (263)
Q Consensus 103 n~~~--~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~-~~g 179 (263)
|... ... .++++.|+++|..++.+.--..|. + ...++-.+..+++.+++. ++|
T Consensus 461 s~~~~~~~~-~~~~~l~~kyga~vV~m~~de~G~----------~-------------~t~e~r~~ia~r~~~~~~~~~G 516 (1229)
T PRK09490 461 SLKEGEEKF-IEHARLVRRYGAAVVVMAFDEQGQ----------A-------------DTRERKIEICKRAYDILTEEVG 516 (1229)
T ss_pred CCCCCCccH-HHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHHcC
Confidence 4432 222 378999999999999976443342 1 112444566666666665 488
Q ss_pred CCH
Q 024724 180 CTS 182 (263)
Q Consensus 180 ~s~ 182 (263)
+++
T Consensus 517 i~~ 519 (1229)
T PRK09490 517 FPP 519 (1229)
T ss_pred CCH
Confidence 654
No 48
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=69.12 E-value=39 Score=32.25 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHc-CCCeEeccCCcCCCc-hhHHHHhHHHHHHHHHcCCcCEEE
Q 024724 26 EDGISMIKHAFSK-GITFFDTADVYGQNA-NETLLGKIGEMKKLVEEGKIKYIG 77 (263)
Q Consensus 26 ~~~~~~l~~A~~~-Gi~~~DTA~~Yg~G~-sE~~lG~~~~l~~l~~~Gkir~iG 77 (263)
+++.++|+.|++. .-+..+--..- -|- -|.+++..+-+-+++++||||.+.
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~~~~iv-vGFs~~~il~a~d~lielI~sGkIKgv~ 412 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSEKHKIV-VGFSHESILAAADPLIELIASGKIKGVV 412 (576)
T ss_pred hhHHHHHHHHHhccCCcccccceeE-EeecHHHHHHHHHHHHHHHhcCCcceEE
Confidence 5678899999875 44444410000 022 467777788999999999999984
No 49
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=68.92 E-value=55 Score=26.98 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCC-cCEEEcCCC-CHHHHHHHhcCCCceEEecc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGK-IKYIGLSEA-SPDTIRRAHGVHPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gk-ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 101 (263)
+.+++.++++.+++.|++.|.-.. . ++. ..+.+++++++-. -..||+.+. +.++++.+.+..- +++..+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~--~---~~~---~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA-~fivsp 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL--N---SPD---PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG-RLIVTP 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--C---Ccc---HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC-CEEECC
Confidence 789999999999999999998763 2 121 1346677776533 357898876 7788877776521 223221
Q ss_pred CCCcccchhhhhHHHHHHhCCceee
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
....++.+.|+..|+.++.
T Consensus 91 ------~~~~~v~~~~~~~~~~~~~ 109 (206)
T PRK09140 91 ------NTDPEVIRRAVALGMVVMP 109 (206)
T ss_pred ------CCCHHHHHHHHHCCCcEEc
Confidence 2235788888888876654
No 50
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=68.74 E-value=22 Score=32.58 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=39.3
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
|.+|.+|.-++.. ..+...+.+++.++++.+.++|+.-+-.--+|| +|++++-+-
T Consensus 126 vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~ 185 (400)
T PRK07379 126 VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQ 185 (400)
T ss_pred CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 5677788777653 245666889999999999999998443334788 577765544
No 51
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=67.29 E-value=71 Score=26.45 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.+++.++++..-+.++.+|.=. . . . ..++.+.+|.+...+. +.+=|-++...+.++++...++++|+..
T Consensus 106 ~~~~a~~~~~~l~~~~i~~iEeP-~-~---~----~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~ 176 (229)
T cd00308 106 TPKEAIRLIRALEKYGLAWIEEP-C-A---P----DDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKP 176 (229)
T ss_pred CHHHHHHHHHHhhhcCCCeEECC-C-C---c----cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCc
Confidence 44555555555445555555421 1 1 0 1156677888877665 3344556788888888888889999876
Q ss_pred CCccc-chhhhhHHHHHHhCCceeecccCcCc
Q 024724 103 SLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 103 n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
+..-- ..-.++...|+++|+.++..+.+..+
T Consensus 177 ~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 177 TRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 65432 11267889999999999987766544
No 52
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=66.97 E-value=81 Score=27.84 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccCcCc
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
++.+.+++++..+. +.|=|.++...+.++++..-++++|+..+.+-- ..-.++...|+.+|+.++..+.+..|
T Consensus 212 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 212 LSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 67788888775554 556677888899999888888999987664321 11368999999999999876655544
No 53
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=66.37 E-value=64 Score=28.79 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeccC-------CcCCCchhHHHHhHHHHHHHHHcCC-cCEEEcC--C-CCHHHHHH
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTAD-------VYGQNANETLLGKIGEMKKLVEEGK-IKYIGLS--E-ASPDTIRR 88 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~-------~Yg~G~sE~~lG~~~~l~~l~~~Gk-ir~iGvs--~-~~~~~l~~ 88 (263)
+..++.++..++++..-++|+..++... +|..|.+ ....++.++++.+.-+ .+...+. + .+.+.++.
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~--~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFS--AHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCC--CCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Confidence 3445889999999999999999999951 1211100 1112444545444322 3333232 1 25666766
Q ss_pred HhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeec
Q 024724 89 AHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 89 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
+.+. .++++.+..+.-+-..-.+.++++++.|..+...
T Consensus 96 a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 6654 4566665554333222367888889988766543
No 54
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=65.93 E-value=96 Score=27.43 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeccCCcCCCchhHHHH---h-HHHHHHHHHcCCcCEEEcCC---------CCHHHHHH
Q 024724 23 VSEEDGISMIKHAFSK-GITFFDTADVYGQNANETLLG---K-IGEMKKLVEEGKIKYIGLSE---------ASPDTIRR 88 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~G~sE~~lG---~-~~~l~~l~~~Gkir~iGvs~---------~~~~~l~~ 88 (263)
.+.++..++++...+. ||+.+--+. | |.++- . .+-++++++-|.++.+.+.+ .+.+.++.
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--G----DPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~ 192 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--G----DPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAA 192 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--C----CcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHH
Confidence 3567788888877654 887654221 1 22221 1 35577777788777555533 34444554
Q ss_pred HhcCCCceEEeccCCCcc--cchhhhhHHHHHHhCCceeecccCcCcc
Q 024724 89 AHGVHPITAVQMEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 89 ~~~~~~~~~~q~~~n~~~--~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
+.+.....++-++.|-.. ...-...++.+++.||.+...++|..|.
T Consensus 193 L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 193 LKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 544432223444444211 0112567788889999999999998774
No 55
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=65.47 E-value=8.5 Score=25.14 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHhh
Q 024724 170 RIENLAKKYKCTSAQLALAWVL 191 (263)
Q Consensus 170 ~l~~ia~~~g~s~~q~al~w~l 191 (263)
-+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4679999999999999999975
No 56
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=65.28 E-value=26 Score=32.31 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=29.2
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETL 57 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~ 57 (263)
|.+|++|-.+|-. .-++..+.+++..+++.+.+.|+.-+-.==+|| +|++.+.
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~ 205 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLES 205 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHH
Confidence 3467777776653 123334556666777777776666553333565 2444333
No 57
>PRK06424 transcription factor; Provisional
Probab=64.43 E-value=29 Score=26.99 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=43.1
Q ss_pred hhhhHHHHHHhCCceeec---ccCcCc--ccCCCCc-C-CCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCH
Q 024724 110 EEEIIPLCRELGIGIVPY---SPLGRG--FFGGKAV-V-ESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTS 182 (263)
Q Consensus 110 ~~~~~~~~~~~gi~v~a~---~~l~~G--~L~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 182 (263)
+..+=+.|.+.|..+..+ +|...- .-+.... . ....... +.....+.+...+........|+.+.++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAY-KKYKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCC-CCccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 456778899999999888 555421 1100000 0 0000000 000011111111223344567888888999999
Q ss_pred HHHHHHHhhcCC
Q 024724 183 AQLALAWVLGQG 194 (263)
Q Consensus 183 ~q~al~w~l~~~ 194 (263)
.++|-+--++..
T Consensus 101 ~eLA~~iGvs~s 112 (144)
T PRK06424 101 ADLAAKIFERKN 112 (144)
T ss_pred HHHHHHhCCCHH
Confidence 999976655433
No 58
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=64.15 E-value=1.2e+02 Score=27.88 Aligned_cols=93 Identities=17% Similarity=0.317 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
++.++.++.|+.-.+.|+.|+=. +-| + ..+.++.++++| |..|+-+.....+...+... -.-
T Consensus 137 mt~d~~~~~ie~qa~dGVDfmTi--H~G-------i-~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~------~~E 198 (423)
T TIGR00190 137 MDEDDMFRAIEKQAKDGVDFMTI--HAG-------V-LLEYVERLKRSG--RITGIVSRGGAILAAWMLHH------HKE 198 (423)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEE--ccc-------h-hHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc------CCc
Confidence 46677777777777777777642 111 1 146677888877 56677666666665544321 245
Q ss_pred CCcccchhhhhHHHHHHhCCceeecccCcCcccCCC
Q 024724 103 SLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 138 (263)
Q Consensus 103 n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 138 (263)
|++...+ ..+++.|++++|.+ +|+.|+-.|.
T Consensus 199 NPlye~f-D~lLeI~~~yDVtl----SLGDglRPG~ 229 (423)
T TIGR00190 199 NPLYKNF-DYILEIAKEYDVTL----SLGDGLRPGC 229 (423)
T ss_pred CchHHHH-HHHHHHHHHhCeee----eccCCcCCCc
Confidence 6666543 67999999999987 5676664444
No 59
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=64.15 E-value=34 Score=31.23 Aligned_cols=70 Identities=10% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccC
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l 130 (263)
++.+.+|++...+- +.|=|-++...+.++++..-++++|+.....-- ..-.++...|+.+|+.+...+..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 77888888876655 556666788889999888888999887664321 11368999999999999887654
No 60
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=63.50 E-value=1.2e+02 Score=27.87 Aligned_cols=93 Identities=15% Similarity=0.295 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
++.++.++.|+.-.+.|+.|+=. +-| - ..+.++.++++| |..|+-+.....+...+... -.-
T Consensus 140 mt~d~~~~~ie~qa~~GVDfmTi--HcG--i------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n------~~E 201 (431)
T PRK13352 140 MTEDDLFDVIEKQAKDGVDFMTI--HCG--V------TRETLERLKKSG--RIMGIVSRGGSFLAAWMLHN------NKE 201 (431)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEE--ccc--h------hHHHHHHHHhcC--CccCeecCCHHHHHHHHHHc------CCc
Confidence 46777777888878888887742 111 1 146777888877 56677776666665554321 145
Q ss_pred CCcccchhhhhHHHHHHhCCceeecccCcCcccCCC
Q 024724 103 SLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 138 (263)
Q Consensus 103 n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 138 (263)
|++...+ ..+++.|++++|.+ +|+.|+-.|.
T Consensus 202 NPlye~f-D~lLeI~~~yDVtl----SLGDglRPG~ 232 (431)
T PRK13352 202 NPLYEHF-DYLLEILKEYDVTL----SLGDGLRPGC 232 (431)
T ss_pred CchHHHH-HHHHHHHHHhCeee----eccCCcCCCc
Confidence 6666653 68999999999987 5676665444
No 61
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=62.92 E-value=75 Score=27.09 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCC-chhH----HHHhHHHHHHHHHc-CCcCEEEcC---CCCHHHHHHHh
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTADVYGQN-ANET----LLGKIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAH 90 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G-~sE~----~lG~~~~l~~l~~~-Gkir~iGvs---~~~~~~l~~~~ 90 (263)
+..++.++..++++.-.+.|+..++....-+.+ .+.. ....++.++.+++. +..+...++ ......++++.
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 444688999999999999999999997321100 0000 00125666666543 345655554 22456666666
Q ss_pred cCCCceEEeccCCCcccchhhhhHHHHHHhCCceeec
Q 024724 91 GVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 91 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
+. .++.+.+.++.-+...-.+.+++++++|..+...
T Consensus 96 ~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 96 DL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred Hc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 53 4566655443322222367888899999766543
No 62
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=62.62 E-value=2.1e+02 Score=30.31 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCc--CEEEcCCCCHHHHHHHhcCC--CceEEe
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKI--KYIGLSEASPDTIRRAHGVH--PITAVQ 99 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gki--r~iGvs~~~~~~l~~~~~~~--~~~~~q 99 (263)
+.+.+.+....-++.|..++|.--.+..-..|+.+- ..+..+..+-.+ --|-+-+++++.++.+++.. ..-+|
T Consensus 366 d~~~a~~~A~~qve~GA~iIDVn~~~~~vd~~eem~--rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IIN- 442 (1178)
T TIGR02082 366 DYDEALDIAKQQVENGAQILDINVDYGMLDGVAAMK--RFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVN- 442 (1178)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH--HHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEE-
Confidence 344555555566688999999876544323344444 223333333222 23677788999999999873 32233
Q ss_pred ccCCCc--ccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 100 MEWSLW--TRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 100 ~~~n~~--~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
..|.. +... .++++.++++|..++.+.--..|
T Consensus 443 -sIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 443 -SISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred -eCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 34443 2222 47999999999999987643334
No 63
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=62.24 E-value=41 Score=30.12 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=40.7
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHHhHHHHHHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLGKIGEMKKLVE 69 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG~~~~l~~l~~ 69 (263)
|.+|.+|--++.. ..+...+.+++.++++.+.+.|+..+-.=-+|| +|++.+-+- +.++.+.+
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~--~~l~~~~~ 176 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLK--EELKLAKE 176 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHH--HHHHHHHh
Confidence 5567777666653 245556788999999999999997543333677 566655554 33444443
No 64
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=62.05 E-value=61 Score=26.52 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCeEeccC-----CcCCCc-hhHHHHh--------HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhc-C-
Q 024724 29 ISMIKHAFSKGITFFDTAD-----VYGQNA-NETLLGK--------IGEMKKLVEEGKIKYIGLSEASPDTIRRAHG-V- 92 (263)
Q Consensus 29 ~~~l~~A~~~Gi~~~DTA~-----~Yg~G~-sE~~lG~--------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~-~- 92 (263)
.+.+.++++.|++.+.--- .|..+. +--++.+ -..|+++.+-|+--=|++.||.-...+--+- .
T Consensus 46 ~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~G 125 (193)
T PF07021_consen 46 PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRG 125 (193)
T ss_pred HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcC
Confidence 3457888899998874321 122100 0001111 5678888888998888999997766544332 2
Q ss_pred CCceEEeccCCCcccc-h----hhhhHHHHHHhCCceeecccCcCcc
Q 024724 93 HPITAVQMEWSLWTRD-I----EEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 93 ~~~~~~q~~~n~~~~~-~----~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
--+..-..+|+-++.. . -.++-++|++.|+.+.-..++..+.
T Consensus 126 rmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 126 RMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 2234566788877653 1 1789999999999999999988763
No 65
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=61.99 E-value=93 Score=27.92 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.+++.+.++..-+.++.+|.-.-.. +. ++.+.+|++...+. +.|=|-++...++.+++..-++++|+..
T Consensus 175 ~~~~A~~~~~~l~~~~l~~iEeP~~~-----~d----~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~ 245 (361)
T cd03322 175 TPNQAARFGKDVEPYRLFWMEDPTPA-----EN----QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTV 245 (361)
T ss_pred CHHHHHHHHHHhhhcCCCEEECCCCc-----cc----HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCc
Confidence 45566666665555666666532111 11 56788888887665 6677778999999999888889999876
Q ss_pred CCccc-chhhhhHHHHHHhCCceeeccc
Q 024724 103 SLWTR-DIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 103 n~~~~-~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
...-- ..-.++.+.|+++|+.++..+.
T Consensus 246 ~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 246 SHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred cccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 65321 1136899999999999987544
No 66
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=61.89 E-value=86 Score=27.37 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhc
Q 024724 169 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDS 215 (263)
Q Consensus 169 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a 215 (263)
.+|.++|+++|. ++.++=..|+-... ...+-.|+|+|+-|-+++-.
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAStPd~lV~~Vi~ 279 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGASTPDWLVQEVIA 279 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCCCHHHHHHHHH
Confidence 589999999997 57888899988844 47888999999998887643
No 67
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=61.36 E-value=38 Score=30.58 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCC-CceEEeccCCCcccc-------hhhhhHHHHHHhCCceeecccCcCc
Q 024724 62 GEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH-PITAVQMEWSLWTRD-------IEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 62 ~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~-------~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
+.+.+|-++|.--.+=.|+.+.+.+..+.+.. .++-+..-.|.+-+. .-.+--.+.+++|+.+.|+-|--.
T Consensus 102 ~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~- 180 (357)
T PF05913_consen 102 EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE- 180 (357)
T ss_dssp HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS-
T ss_pred HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC-
Confidence 34444444444444455665566666665542 222111122222111 113455667789999998866442
Q ss_pred ccCCCCcCCCCCC-CcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCC--cHHHHH
Q 024724 134 FFGGKAVVESVPA-DSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTT--KIKNLD 210 (263)
Q Consensus 134 ~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~--~~~~l~ 210 (263)
...|. ....+|. ..+| +++| .++...++..+.+.-|++|=. +.+.++
T Consensus 181 ~~rGP-l~~GLPTlE~hR----------------------------~~~p-~~aa~~L~~~~~iD~V~IGD~~~s~~el~ 230 (357)
T PF05913_consen 181 NKRGP-LYEGLPTLEKHR----------------------------NLPP-YAAALELFALGLIDDVIIGDPFASEEELK 230 (357)
T ss_dssp S-BTT-T-S--BSBGGGT----------------------------TS-H-HHHHHHHHHTTT--EEEE-SC---HHHHH
T ss_pred cccCC-ccCCCCccHHHc----------------------------CCCH-HHHHHHHHhcCCCCEEEECCCcCCHHHHH
Confidence 11221 1111221 1111 2333 446677788888899999866 555566
Q ss_pred Hhhhc
Q 024724 211 DNIDS 215 (263)
Q Consensus 211 enl~a 215 (263)
+-...
T Consensus 231 ~~~~~ 235 (357)
T PF05913_consen 231 QLAQY 235 (357)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55554
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=60.28 E-value=76 Score=27.26 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh-----HHHHHHHHHcC--CcCEEEcCCC---CHHHHHHH
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-----IGEMKKLVEEG--KIKYIGLSEA---SPDTIRRA 89 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-----~~~l~~l~~~G--kir~iGvs~~---~~~~l~~~ 89 (263)
+..++.++..++.+..-++||..++...-=+ ..+...|. .+.++++.+.. ..+..+++.. +.+.+..+
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSS--PEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCC--CccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 3445889999999998899999999863222 11111111 23444444432 4555555543 34555555
Q ss_pred hcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeec
Q 024724 90 HGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 90 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
.+ ..++.+.+.+..-.-..-.+.+++++++|+.+...
T Consensus 92 ~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 92 SG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred hc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 43 34555555443322221367888888999866543
No 69
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=60.02 E-value=21 Score=24.66 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 024724 162 DRNKNIYFRIENLAKKYKCTSAQLALAW 189 (263)
Q Consensus 162 ~~~~~~~~~l~~ia~~~g~s~~q~al~w 189 (263)
++..+.+.+|.++|++.|++..++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678899999999999999999988543
No 70
>PRK05481 lipoyl synthase; Provisional
Probab=59.96 E-value=50 Score=28.79 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHc--CCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEecc
Q 024724 24 SEEDGISMIKHAFSK--GITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~--Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 101 (263)
+.++..++++.|-+. |+..- |.-++|.|++|+-+- +.|+.+++- .+..+++..|++ .+.+ . .|++
T Consensus 178 t~e~~le~i~~ar~~~pgi~~~-t~~IvGfGET~ed~~--~tl~~lrel-~~d~v~if~Ys~----pa~k--~---~~v~ 244 (289)
T PRK05481 178 DYERSLELLKRAKELHPGIPTK-SGLMVGLGETDEEVL--EVMDDLRAA-GVDILTIGQYLQ----PSRK--H---LPVE 244 (289)
T ss_pred CHHHHHHHHHHHHHhCCCCeEe-eeeEEECCCCHHHHH--HHHHHHHhc-CCCEEEEEccCC----Cccc--c---CCCC
Confidence 455566666666666 55533 445556555554443 333333332 345555555554 0000 0 0222
Q ss_pred CCCcccchhhhhHHHHHHhCCceeecccCcC
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 132 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 132 (263)
-.+-..+ ...+.+.+.+.|+..+..+|+.+
T Consensus 245 ~~~k~~r-~~~l~~~~~~i~~~~~~~~~~~~ 274 (289)
T PRK05481 245 RYVTPEE-FDEYKEIALELGFLHVASGPLVR 274 (289)
T ss_pred CcCCHHH-HHHHHHHHHHcCchheEecCccc
Confidence 2221111 26788899999999999899885
No 71
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.83 E-value=61 Score=27.65 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=24.2
Q ss_pred ccceeccccCCCCCCCCC-CHHHHHHHHHHHHHcCCCeEecc
Q 024724 6 SKLGLGCMNLSSGYSSPV-SEEDGISMIKHAFSKGITFFDTA 46 (263)
Q Consensus 6 s~lglGt~~~g~~~~~~~-~~~~~~~~l~~A~~~Gi~~~DTA 46 (263)
..|+||+..- .+ ......+.++.+-++|+..++..
T Consensus 6 ~~~~~~~~~~------~~~~~~~~~e~~~~~~~~G~~~iEl~ 41 (283)
T PRK13209 6 KQIPLGIYEK------ALPAGECWLEKLAIAKTAGFDFVEMS 41 (283)
T ss_pred ccccceeecc------cCCCCCCHHHHHHHHHHcCCCeEEEe
Confidence 4678887532 21 12346778888889999999985
No 72
>PRK14017 galactonate dehydratase; Provisional
Probab=59.82 E-value=1.1e+02 Score=27.77 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccC
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l 130 (263)
++.+.+|.+...+. ..|=|.++...+..+++..-++++|+..+.+-- ..-.++.+.|+.+||.++..+..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 77888998887665 556677899999999998888999987665421 12368999999999999876543
No 73
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=59.68 E-value=1.3e+02 Score=26.71 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeccCCcCCCchhHHHHh----HHHHHHHHHcCCcCEEEcCC----CCHHH----HHHHh
Q 024724 24 SEEDGISMIKHAFSK-GITFFDTADVYGQNANETLLGK----IGEMKKLVEEGKIKYIGLSE----ASPDT----IRRAH 90 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~G~sE~~lG~----~~~l~~l~~~Gkir~iGvs~----~~~~~----l~~~~ 90 (263)
+.++..++++..-+. |++.+--+. | |.++-. .+-++++..-..++.+|+.+ ..+.. +.+.+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--G----EPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L 199 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--G----DPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLL 199 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--c----ccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHH
Confidence 445667767665544 887766443 3 332211 24455666667778888764 32222 22233
Q ss_pred cCCCceEE-eccCCCccc--chhhhhHHHHHHhCCceeecccCcCcc
Q 024724 91 GVHPITAV-QMEWSLWTR--DIEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 91 ~~~~~~~~-q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
+...+..+ ++.+|-... ....+.++.+++.|+.+...+++..|+
T Consensus 200 ~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 200 ANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC
Confidence 33444443 456663221 112568888899999999999998774
No 74
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=59.50 E-value=24 Score=31.55 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCch---hHHHHh---------------------------------------H
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNAN---ETLLGK---------------------------------------I 61 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~s---E~~lG~---------------------------------------~ 61 (263)
....+.+++...++.|.+.||.+..|..-.. |++-|. +
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~i 158 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAI 158 (349)
T ss_pred CchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchHHHHH
Confidence 4567899999999999999999988874211 222222 5
Q ss_pred HHHHHHHHcCCc--CE----EEcCCCCHHHHHHHhcCCCceE--EeccCCCcccchhhhhHHHHHHhC-----Cceeec-
Q 024724 62 GEMKKLVEEGKI--KY----IGLSEASPDTIRRAHGVHPITA--VQMEWSLWTRDIEEEIIPLCRELG-----IGIVPY- 127 (263)
Q Consensus 62 ~~l~~l~~~Gki--r~----iGvs~~~~~~l~~~~~~~~~~~--~q~~~n~~~~~~~~~~~~~~~~~g-----i~v~a~- 127 (263)
-+|.=|+++|.+ .. -++|+.+...-..........+ +...|++..++...++...+.+.. +.+...
T Consensus 159 Lal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl 238 (349)
T COG0002 159 LALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHL 238 (349)
T ss_pred HHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccccccCchHHHHHHhhhcccCcCceEEeccc
Confidence 566667777753 22 1333332211111111111111 455788888776666766666332 344433
Q ss_pred ccCcCcccCCC
Q 024724 128 SPLGRGFFGGK 138 (263)
Q Consensus 128 ~~l~~G~L~~~ 138 (263)
.|+.+|+|+..
T Consensus 239 ~p~~RGIl~Ti 249 (349)
T COG0002 239 GPFVRGILATI 249 (349)
T ss_pred ccccceEEEEE
Confidence 67788888765
No 75
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.97 E-value=1.2e+02 Score=26.11 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCC----CchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhc---CCCc
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQ----NANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG---VHPI 95 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~----G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~---~~~~ 95 (263)
+|.+...+.++..++.|++-+=...+.|. ...|+.-- ++...+..+....-..|++..+..+..+..+ ...+
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l-~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAV-IEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHH-HHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCC
Confidence 58899999999999999998865555443 23333211 3444444442334568998877665544433 3455
Q ss_pred eEEeccCCCcccchhhhhHHHHH----HhCCceeeccc
Q 024724 96 TAVQMEWSLWTRDIEEEIIPLCR----ELGIGIVPYSP 129 (263)
Q Consensus 96 ~~~q~~~n~~~~~~~~~~~~~~~----~~gi~v~a~~~ 129 (263)
+.+++..-.+.+..+.+++++.+ ..++.++.|..
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 54444222222222345555544 45888888843
No 76
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=58.12 E-value=1.1e+02 Score=27.60 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccCcCc
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
++.+.+|++...+. +.|=|-++...+.++++...++++|+...-.-- ..-.++...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 67788888876555 667677888899999888888999986665321 11267899999999998765444433
No 77
>PLN00191 enolase
Probab=57.34 E-value=1.7e+02 Score=27.44 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCcCEEEcC--CCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeec
Q 024724 61 IGEMKKLVEEGKIKYIGLS--EASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs--~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 127 (263)
|+.+.+|.++.++.-+|=- ..++..+.++++..-.+++++..|-.-- ..-.++...|+.+|+.++..
T Consensus 325 ~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 325 WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 8889999888777666622 2568888899888888888887774432 12367899999999998764
No 78
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=57.32 E-value=72 Score=28.61 Aligned_cols=72 Identities=8% Similarity=0.100 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccCcC
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGR 132 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~ 132 (263)
++.+.+|+++..+. +.|=+-++...++++++..-++++|+.....-- ..-.++...|+++|+.++..+....
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 67888888876655 555566788899999888888889886554321 1136889999999999876544433
No 79
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=57.15 E-value=1.3e+02 Score=27.49 Aligned_cols=70 Identities=7% Similarity=-0.068 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCcc-cchhhhhHHHHHHhCCceeecccC
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~a~~~l 130 (263)
++.+.+|++.-.+. +.|=|-++...++++++..-++++|+...-.- -..-.++...|+.+|+.++..+..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 78889998886665 56667789999999999888999998766432 111368999999999999876543
No 80
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.04 E-value=67 Score=26.69 Aligned_cols=97 Identities=18% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhc---CCCceEEe
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG---VHPITAVQ 99 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~---~~~~~~~q 99 (263)
++.++..++++.-.++||..|+.....- +|...-.++.+.+.... .+-.+++......++..++ ...++.+.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~ 85 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFA---SEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDIIR 85 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTS---SHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEccccc---CHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEEE
Confidence 4788999999998899999999982222 45544445566666665 4444555556666655443 24444444
Q ss_pred ccCCCcc--------cc------hhhhhHHHHHHhCCce
Q 024724 100 MEWSLWT--------RD------IEEEIIPLCRELGIGI 124 (263)
Q Consensus 100 ~~~n~~~--------~~------~~~~~~~~~~~~gi~v 124 (263)
+..+.-+ .. .-.+.+.+++++|..+
T Consensus 86 i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 86 IFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred ecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4333222 11 1157889999999888
No 81
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=56.38 E-value=1.2e+02 Score=25.37 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeccCC---cCCCch--hHHHHh------------HHHHHHHHHc--CCcCEEEcCCCCHHH
Q 024724 25 EEDGISMIKHAFSKGITFFDTADV---YGQNAN--ETLLGK------------IGEMKKLVEE--GKIKYIGLSEASPDT 85 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~DTA~~---Yg~G~s--E~~lG~------------~~~l~~l~~~--Gkir~iGvs~~~~~~ 85 (263)
.....++++.|.+.|+..+=.+++ |..... +.+-+- .+.+.++.++ ...-.|.+..-+...
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~~~i~Il~GiEi~~~~~~~~~~~~~~~~~~~d~v~v~~~~~~~ 94 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDLLGFEIFRGVEIVASNPSKLRGLVGKFRKKVDVLAVHGGDEKV 94 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHhcCCcEEeeEEEecCCHHHHHHHHHhccCcccEEEEeCCCHHH
Confidence 456889999999999998755444 321110 111010 4555555544 235566666545444
Q ss_pred HHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCcee-ecccCc
Q 024724 86 IRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIV-PYSPLG 131 (263)
Q Consensus 86 l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~-a~~~l~ 131 (263)
.+.+++...++++-.++....+ .....++..|.++|+.+- .++|+-
T Consensus 95 ~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~ 142 (237)
T PRK00912 95 NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDIL 142 (237)
T ss_pred HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhh
Confidence 4667777778877766653221 223577788888888775 445543
No 82
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=55.92 E-value=1.4e+02 Score=29.39 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHhhcCCCceeeccCCCcHHHHHHhh
Q 024724 169 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 213 (263)
Q Consensus 169 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl 213 (263)
.+|.++|++.|. ++.++.-.|+-... ...+..|+|+|+.+-+.+
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~-~vgitagaStP~~~i~~v 271 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVK-IIGVTAGASTPDWIIEEV 271 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEeccCCCHHHHHHH
Confidence 588999998874 68899889977655 488899999999664443
No 83
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=55.41 E-value=20 Score=27.41 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.2
Q ss_pred cchhhhhHHHHHHhCCceeecccCc
Q 024724 107 RDIEEEIIPLCRELGIGIVPYSPLG 131 (263)
Q Consensus 107 ~~~~~~~~~~~~~~gi~v~a~~~l~ 131 (263)
++...++++.|++.||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445889999999999999997776
No 84
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=55.22 E-value=1e+02 Score=28.34 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhc--CCCceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCcccCC
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHG--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGG 137 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~ 137 (263)
..-++.+.++.-|....+...+...+.+++. ..++.++..+-|++..-.+ ..+.+.++++|+-++.-.+++.+++-.
T Consensus 116 ~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~ 195 (396)
T COG0626 116 YRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQR 195 (396)
T ss_pred HHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccC
Confidence 5566677666777777776666655555543 5777788889998877544 678999999999999999999887755
Q ss_pred C
Q 024724 138 K 138 (263)
Q Consensus 138 ~ 138 (263)
.
T Consensus 196 P 196 (396)
T COG0626 196 P 196 (396)
T ss_pred h
Confidence 4
No 85
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=54.87 E-value=1.5e+02 Score=26.15 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCCcCEEEcCC
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGKIKYIGLSE 80 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGvs~ 80 (263)
.++.++..++++.+.+.|+..|--. | -|.++-. .+.++.+++.+.+..+++.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---G---GEPllr~dl~~li~~i~~~~~l~~i~itT 98 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---G---GEPLVRRGCDQLVARLGKLPGLEELSLTT 98 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C---cCCCccccHHHHHHHHHhCCCCceEEEEe
Confidence 3678899999999999999888653 3 2444443 34455566666555666654
No 86
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=54.66 E-value=1.6e+02 Score=26.93 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC-CCceEEeccCCCcccch-hhhhHHHHHHhCCceeecccCcCcc
Q 024724 62 GEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 62 ~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
..++.+.+.+.++.+-+...+.+.++++++. .++.++..+-|+.-+-. -.++.+.|+++|+-++.-.+.+.+.
T Consensus 114 ~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 114 RLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred HHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3455554455566666655577888777643 34445555666644332 2689999999999999877776553
No 87
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=54.59 E-value=1.4e+02 Score=26.04 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHhhcCCCceeeccCCCcHHHHHHhh
Q 024724 169 FRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 213 (263)
Q Consensus 169 ~~l~~ia~~~g~------s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl 213 (263)
.+|.++|++++. ++.++-..|+-... ...+..|+|+|+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 589999999985 68899999988765 488999999999887665
No 88
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.19 E-value=72 Score=28.54 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCcc-cchhhhhHHHHHHhCCceeecc
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~a~~ 128 (263)
++.+.+|+++.-+. +.|=|.++...+..+++..-++++|+.....- -..-.++.+.|+++|+.++..+
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 78888998875554 55556778999999988778899998765432 1123689999999999988654
No 89
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=53.40 E-value=1.3e+02 Score=26.75 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.+++.++++..-+.|+.+|+-. ... ..++.+.++++.-.+. ..|=|-++...+.++++...++++|+..
T Consensus 201 ~~~~a~~~~~~l~~~~i~~iEqP-~~~--------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~ 271 (357)
T cd03316 201 DLAEAIRLARALEEYDLFWFEEP-VPP--------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDV 271 (357)
T ss_pred CHHHHHHHHHHhCccCCCeEcCC-CCc--------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCc
Confidence 44555555555444555555421 110 1266778888875554 3334556889999999888889999876
Q ss_pred CCcc-cchhhhhHHHHHHhCCceeeccc
Q 024724 103 SLWT-RDIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 103 n~~~-~~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
.-.- -..-.++...|+++|+.++..+.
T Consensus 272 ~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 272 TKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 6542 11136899999999999876543
No 90
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=53.16 E-value=1.4e+02 Score=25.41 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccC-CcCCC----chhHHHHhH-HHHHHHHHc-CCcCEEEcCCCCHHHHHHHhcCCCc
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTAD-VYGQN----ANETLLGKI-GEMKKLVEE-GKIKYIGLSEASPDTIRRAHGVHPI 95 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg~G----~sE~~lG~~-~~l~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~ 95 (263)
.+.+++.+..+..++.|.+++|... .-.+| ..|+.+-++ ..++.+++. +. -+.+-+++++.++++++...-
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCCC
Confidence 3678888888888999999999842 11111 122222222 344555554 43 478889999999999987433
Q ss_pred eEEeccCCCcccchhhhhHHHHHHhCCceeecc
Q 024724 96 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 96 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~ 128 (263)
-++-+ +... ..++++.++++|..++.+.
T Consensus 98 iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 IINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 23333 2221 3578899999999999854
No 91
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.82 E-value=92 Score=29.08 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcC-CcCE---------EEcCCCCHHHHHHH
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEG-KIKY---------IGLSEASPDTIRRA 89 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~G-kir~---------iGvs~~~~~~l~~~ 89 (263)
.++.++..+++...-+.|+..++...-=+...+=+++++ |+.++.+++.. .++. +|.+++..+.+++.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 357788888888888899999998311000011122222 77777777652 2332 46666655444433
Q ss_pred hc---CCCceEEeccCCCcccchhhhhHHHHHHhCCceee
Q 024724 90 HG---VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 90 ~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
++ ...++++.+...+-+..--...+++++++|..+..
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 22 24566666654443322135688999999976543
No 92
>PF14502 HTH_41: Helix-turn-helix domain
Probab=52.34 E-value=12 Score=23.22 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHhhcCCCce
Q 024724 168 YFRIENLAKKYKCT--SAQLALAWVLGQGDDV 197 (263)
Q Consensus 168 ~~~l~~ia~~~g~s--~~q~al~w~l~~~~v~ 197 (263)
++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 45789999999887 6899999999888543
No 93
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.21 E-value=1.1e+02 Score=25.96 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCeEecc
Q 024724 27 DGISMIKHAFSKGITFFDTA 46 (263)
Q Consensus 27 ~~~~~l~~A~~~Gi~~~DTA 46 (263)
...+.++.+-+.|+..|+.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~ 36 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMS 36 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEe
Confidence 46788999999999999986
No 94
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=52.12 E-value=1.7e+02 Score=25.98 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCCcCEEEcCC----CCHHHHHHHhcCCCc
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGKIKYIGLSE----ASPDTIRRAHGVHPI 95 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGvs~----~~~~~l~~~~~~~~~ 95 (263)
.++.++..++++.+.+.|+..|.- .| -|.++-. .+-++.+++.|. .+.+.+ .+.+.++++.+ ..+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~---~G---GEPll~~~~~~ii~~~~~~g~--~~~l~TNG~ll~~e~~~~L~~-~g~ 106 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHF---SG---GEPLARPDLVELVAHARRLGL--YTNLITSGVGLTEARLDALAD-AGL 106 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEE---eC---ccccccccHHHHHHHHHHcCC--eEEEEeCCccCCHHHHHHHHh-CCC
Confidence 357888999999999999887763 33 2555544 456677777775 334332 24455555554 345
Q ss_pred eEEeccCCCcccc-----------hh--hhhHHHHHHhCCceeecccC
Q 024724 96 TAVQMEWSLWTRD-----------IE--EEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 96 ~~~q~~~n~~~~~-----------~~--~~~~~~~~~~gi~v~a~~~l 130 (263)
+.+|+...-.++. .+ .+.+..+++.|+.+....++
T Consensus 107 ~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv 154 (358)
T TIGR02109 107 DHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI 154 (358)
T ss_pred CEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 5566655433221 00 23445666777766544443
No 95
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.23 E-value=56 Score=30.19 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=44.6
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHHhHHHHHHHHHcCCcCEEEc
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLGKIGEMKKLVEEGKIKYIGL 78 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG~~~~l~~l~~~Gkir~iGv 78 (263)
+..|.+|.-++.. ..+...+.+++.+.++.+-+.|+..+..--+|| +|++++-+- +.++.+.+-| +.+|.+
T Consensus 152 ~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~--~~l~~~~~l~-~~~is~ 227 (430)
T PRK08208 152 VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWM--ESLDQALVYR-PEELFL 227 (430)
T ss_pred CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH--HHHHHHHhCC-CCEEEE
Confidence 4566677666542 245555788899999999999998653334788 677766655 3444444332 344443
No 96
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.20 E-value=1.6e+02 Score=25.20 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCC----C-----chhHHHHh-------HHHHHHHHHcC-CcCEEEcCCCCH---
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQ----N-----ANETLLGK-------IGEMKKLVEEG-KIKYIGLSEASP--- 83 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~----G-----~sE~~lG~-------~~~l~~l~~~G-kir~iGvs~~~~--- 83 (263)
+.+...++++...+.|++.+.-.--|.. | .+++.+.. ++.+++++++. .+.-+.++-+++
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 7888999999999999999987644432 2 12333332 66677777552 344344444444
Q ss_pred ---HHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCcee-ecccCc
Q 024724 84 ---DTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIV-PYSPLG 131 (263)
Q Consensus 84 ---~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~-a~~~l~ 131 (263)
+...+.+....++.+-++.=+... ..++++.|+++|+..+ ..+|-.
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEECCCC
Confidence 443333444555555554434322 3679999999998754 444543
No 97
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=50.97 E-value=66 Score=30.04 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHcCCCeE
Q 024724 24 SEEDGISMIKHAFSKGITFF 43 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~ 43 (263)
+.+.+.++++.-.+.|+++.
T Consensus 259 ~~~~~~~l~~~l~~~~i~~~ 278 (472)
T TIGR03471 259 DKPRAEEIARKLGPLGVTWS 278 (472)
T ss_pred CHHHHHHHHHHHhhcCceEE
Confidence 44556666666566676653
No 98
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=50.39 E-value=1.7e+02 Score=25.46 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCc-CCC----chhHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVY-GQN----ANETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITA 97 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Y-g~G----~sE~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 97 (263)
+.+++.+-....++.|...+|-...- .+| ..|+.+-+ ...++.++++-.+ -|.|-++.++.++++++..---+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHII 114 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCEE
Confidence 56777777777788999999986221 122 22333333 3466666654222 48888999999999998742223
Q ss_pred EeccCCCcccchhhhhHHHHHHhCCceeeccc
Q 024724 98 VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 98 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
|-+ ..+ . +.++++.++++|..++.+..
T Consensus 115 NDI-~g~-~---d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 115 NDI-RSL-S---EPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred EEC-CCC-C---CHHHHHHHHHcCCCEEEEcC
Confidence 333 122 1 24678889999999988743
No 99
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=50.29 E-value=1.1e+02 Score=27.79 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=33.6
Q ss_pred CHHHHHHHhcCCCc-eEEec-cCCCcccc----hhhhhHHHHHHhCCceeecccCcCcccCC
Q 024724 82 SPDTIRRAHGVHPI-TAVQM-EWSLWTRD----IEEEIIPLCRELGIGIVPYSPLGRGFFGG 137 (263)
Q Consensus 82 ~~~~l~~~~~~~~~-~~~q~-~~n~~~~~----~~~~~~~~~~~~gi~v~a~~~l~~G~L~~ 137 (263)
+-+.+++.+....+ .++++ +-|+.-+- ...++.+.|.+|||.||+-.--+.=.+.|
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 55667766655442 12222 44443332 22689999999999999865555444445
No 100
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=49.91 E-value=1.6e+02 Score=25.07 Aligned_cols=98 Identities=12% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHc-CCcCEEEcCCCCHHHHHHHhcCC---CceE
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHGVH---PITA 97 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~---~~~~ 97 (263)
.++.++..++++.-.++|+..++...... ++. .++.++.+.+. ..++..+++......++.+.+.. +++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~~~---~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA---SPG---DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHH---HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCE
Confidence 35788999999999999999999863221 332 23556666553 24777777766667777766653 2555
Q ss_pred EeccCCCc--------ccchh------hhhHHHHHHhCCcee
Q 024724 98 VQMEWSLW--------TRDIE------EEIIPLCRELGIGIV 125 (263)
Q Consensus 98 ~q~~~n~~--------~~~~~------~~~~~~~~~~gi~v~ 125 (263)
+.+.+++- ....+ .+.+++++++|+.+.
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 55543321 11111 467788889997755
No 101
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=49.89 E-value=72 Score=26.46 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCC-cCEEEcC-CCCHHHHHHHhcCCCceEEec
Q 024724 24 SEEDGISMIKHAFSK-GITFFDTADVYGQNANETLLGKIGEMKKLVEEGK-IKYIGLS-EASPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gk-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~ 100 (263)
+.+++..+.+...+. |+=|...++-|= + .+...++...-. ++.+||. |.+.+.+.++++..+++.+|+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s------~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQl 81 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---S------PEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQL 81 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---C------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 445555544443443 333444455454 1 234444555544 8899986 568889999999999999998
Q ss_pred cCCCcccchhhhhHHHHHHhC-Ccee
Q 024724 101 EWSLWTRDIEEEIIPLCRELG-IGIV 125 (263)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~~~g-i~v~ 125 (263)
+-.. ..+.++..++.. +.++
T Consensus 82 HG~e-----~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 82 HGDE-----DPEYIDQLKEELGVPVI 102 (208)
T ss_pred CCCC-----CHHHHHHHHhhcCCceE
Confidence 7652 345666666554 4444
No 102
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=49.88 E-value=2e+02 Score=26.15 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=31.2
Q ss_pred ccceeccccCCC----CCCCC-CCHHHHHHHHHHHHHcCCCeEecc
Q 024724 6 SKLGLGCMNLSS----GYSSP-VSEEDGISMIKHAFSKGITFFDTA 46 (263)
Q Consensus 6 s~lglGt~~~g~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DTA 46 (263)
.+.+||-|.+|+ .||.. .+..+..+.++.+-+.|+..+...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 378999999984 36655 233467789999999999998765
No 103
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=49.85 E-value=1.7e+02 Score=25.13 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCC-cCEEEcCCCCHHHHHHHhcCCCceEEec
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 100 (263)
.++.++..++++.-.++|+..++... .. .++... ++.+.+.+.++ .+-.++...+.+.++.+.+. .++.+.+
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~-P~--~~~~~~---~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~i 90 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS-PA--ASPQSR---ADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVDL 90 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC-CC--CCHHHH---HHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEEE
Confidence 35788999999999999999999863 22 234333 34444444343 33355566677888888775 3333333
Q ss_pred cCCC--------cccchh------hhhHHHHHHhCCceeecc
Q 024724 101 EWSL--------WTRDIE------EEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 101 ~~n~--------~~~~~~------~~~~~~~~~~gi~v~a~~ 128 (263)
.++. +.+..+ .+.+.+++++|+.+....
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2211 111111 457788889998765543
No 104
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.58 E-value=88 Score=24.32 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=42.4
Q ss_pred EEEcCCCC--HHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcc
Q 024724 75 YIGLSEAS--PDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 75 ~iGvs~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
-+|...|+ ...+.+++....|+++ |.-+.+.+ .+.+..+-+.++.++.-|.+.++.
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi---~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVI---NLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEE---ecCCcCCH-HHHHHHHHhcCCCEEEEEeccchH
Confidence 34777774 4678888888888776 44445554 678888899999999999998764
No 105
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=49.18 E-value=2e+02 Score=25.88 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCC------CchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCc
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQ------NANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 95 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~------G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 95 (263)
.++.++-.++++...+.|++.|+....-.+ ++.++.+ +.+++...++..++. .+...++++++.. .
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~------~~i~~~~~~~~~~l~-~n~~die~A~~~g-~ 135 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVM------AAVRNLEGARFPVLT-PNLKGFEAAIAAG-A 135 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHH------HHHHhccCCceeEEc-CCHHHHHHHHHcC-c
Confidence 367889999999999999999998743221 2333333 333332335555554 4778888888762 2
Q ss_pred eEEecc---------CCCcccchh-----hhhHHHHHHhCCceeec
Q 024724 96 TAVQME---------WSLWTRDIE-----EEIIPLCRELGIGIVPY 127 (263)
Q Consensus 96 ~~~q~~---------~n~~~~~~~-----~~~~~~~~~~gi~v~a~ 127 (263)
+.+.+. .|+-....+ .+++++++++|+.+..+
T Consensus 136 ~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 136 KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 222222 222111111 47899999999888533
No 106
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=48.91 E-value=19 Score=26.12 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhcCCCceEEeccCCCcc-cchhhhhHHHHHHhCCceeecccCcCc
Q 024724 79 SEASPDTIRRAHGVHPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 79 s~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
+.++...++++++..-++++|+...-.- -..-..+.+.|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 4578889999999888899998654331 11136899999999999999886 544
No 107
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=48.61 E-value=60 Score=24.15 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCCCC
Q 024724 165 KNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPIE 235 (263)
Q Consensus 165 ~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 235 (263)
.+.+..+.+..++++.+..++|. .+=...++++++...+...+-+++++++..|-.....+
T Consensus 54 ~e~i~~~~~~L~~~~L~k~E~~~----------i~Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~ 114 (118)
T smart00657 54 REIVRAVRTLLKSKKLHKFEIAQ----------LGNLRPETAEEAQLLIPSLEERIDEEELEELLDDLSSL 114 (118)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHH----------HhCCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHHh
Confidence 44556777777789999998773 22234568999999999888789999998888776544
No 108
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=48.39 E-value=74 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=28.5
Q ss_pred CCcCEEEcC-CCCHHHHHHHhcCCCceEEeccCC
Q 024724 71 GKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 103 (263)
Q Consensus 71 Gkir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 103 (263)
+.++.+||. |.+++.+.++++...++++|++-+
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 568899985 779999999999999999998753
No 109
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=47.99 E-value=2.1e+02 Score=25.65 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=40.9
Q ss_pred CEEEcCCCCHHHHHHHhcC-CCceEEeccCCCcccch-hhhhHHHHHHhCCceeecccCcCccc
Q 024724 74 KYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 74 r~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
+-.-+...+.+.++++++. .+..++..+.|+..... -.++.+.|+++|+-++.-.+.+.+++
T Consensus 117 ~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 117 RFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred eEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 3333444567777777643 44555566778754432 37899999999999998877765544
No 110
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=47.82 E-value=1.3e+02 Score=25.71 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCCeEeccCC
Q 024724 26 EDGISMIKHAFSKGITFFDTADV 48 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA~~ 48 (263)
....+.++.+-+.|+..++....
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~ 38 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD 38 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC
Confidence 45677888889999999998643
No 111
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=47.80 E-value=1.6e+02 Score=24.72 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh---------------HHHHHHHHHcCCcCEEEcCC--------
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK---------------IGEMKKLVEEGKIKYIGLSE-------- 80 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~---------------~~~l~~l~~~Gkir~iGvs~-------- 80 (263)
+.++..++++.|-..|.+|+|.|..- +++.. -+.|-..++.|- .-|=+.|
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAadp------~LV~~~~~~s~lPICVSaVep~~f~~aV~AGA-dliEIGNfDsFY~qG 97 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAADP------ELVKLAKSLSNLPICVSAVEPELFVAAVKAGA-DLIEIGNFDSFYAQG 97 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCCH------HHHHHHHHhCCCCeEeecCCHHHHHHHHHhCC-CEEEecchHHHHhcC
Confidence 88999999999999999999998532 23322 333444444442 1222233
Q ss_pred --CCHHHHHHHhc-------CCCceEEeccCCCcccchhhhhHHHHHHhCCceee
Q 024724 81 --ASPDTIRRAHG-------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 81 --~~~~~l~~~~~-------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
|+.+++..+.+ ..++ ++-+++.+-.. .+..+-....+.|+.++-
T Consensus 98 r~f~a~eVL~Lt~~tR~LLP~~~L-sVTVPHiL~ld-~Qv~LA~~L~~~GaDiIQ 150 (242)
T PF04481_consen 98 RRFSAEEVLALTRETRSLLPDITL-SVTVPHILPLD-QQVQLAEDLVKAGADIIQ 150 (242)
T ss_pred CeecHHHHHHHHHHHHHhCCCCce-EEecCccccHH-HHHHHHHHHHHhCCcEEE
Confidence 34444433322 2233 45555554222 246777788889998875
No 112
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=47.21 E-value=1.7e+02 Score=26.71 Aligned_cols=112 Identities=13% Similarity=0.245 Sum_probs=66.4
Q ss_pred ccccceeccccCCC----CC--CCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEE
Q 024724 4 QVSKLGLGCMNLSS----GY--SSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIG 77 (263)
Q Consensus 4 ~vs~lglGt~~~g~----~~--~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iG 77 (263)
+.|++-.||..+=. .. ...++.+..++.|.+-.+.|+.|+=.- -| + ..+.+..++++|+ ..|
T Consensus 113 ~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTIH--aG-------V-~~~~~~~~~~~~R--~~g 180 (432)
T COG0422 113 RNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTIH--AG-------V-LLEYVPRTKRSGR--VTG 180 (432)
T ss_pred hcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEee--hh-------h-hHHHHHHHHhcCc--eee
Confidence 45556666654410 00 123466777788888888888887521 11 1 1467777888776 456
Q ss_pred cCCCCHHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCC
Q 024724 78 LSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 138 (263)
Q Consensus 78 vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 138 (263)
+.+-....+...+- ....-|++...+ .++++.|++++|.+ +|+.|+-.|.
T Consensus 181 iVSRGGsi~a~Wml------~~~~ENply~~f-d~lleI~k~yDvtl----SLGDglRPG~ 230 (432)
T COG0422 181 IVSRGGSIMAAWML------HNHKENPLYEHF-DELLEIFKEYDVTL----SLGDGLRPGC 230 (432)
T ss_pred eeccchHHHHHHHH------HcCCcCchhhhH-HHHHHHHHHhCeee----eccCCCCCCc
Confidence 66665555544332 112345655543 68999999999987 4566654443
No 113
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=47.14 E-value=87 Score=28.28 Aligned_cols=62 Identities=11% Similarity=0.261 Sum_probs=40.3
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCe--EeccCCcC-CCchhHHHHhHHHHHHHHHc
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITF--FDTADVYG-QNANETLLGKIGEMKKLVEE 70 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~--~DTA~~Yg-~G~sE~~lG~~~~l~~l~~~ 70 (263)
+.+|.+|.-++.. ..+...+.+++.+.++.+.+.|+.- +| -+|| +|++++-+- +.++.+.+-
T Consensus 114 ~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~D--li~GlPgqt~~~~~--~~l~~~~~l 182 (370)
T PRK06294 114 INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSID--LIYGLPTQSLSDFI--VDLHQAITL 182 (370)
T ss_pred CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEE--eecCCCCCCHHHHH--HHHHHHHcc
Confidence 4566777666643 2455557788999999999999863 56 4788 577766554 344444433
No 114
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=47.02 E-value=1.9e+02 Score=26.46 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCc--C-EEEcCCCCHHHHHHHhcCCCceEEeccCCCcc-cchhhhhHHHHHHhCCceeec
Q 024724 61 IGEMKKLVEEGKI--K-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 61 ~~~l~~l~~~Gki--r-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~a~ 127 (263)
++.+.+|++.-.+ . .-|=+.++...++.+++..-++++|+...-.- -..-.++...|+.+|+.++..
T Consensus 248 ~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 248 YWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred HHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 7788888887542 2 23667788899999999888999998766542 112368999999999998664
No 115
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=46.71 E-value=1e+02 Score=26.29 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEeccCCC
Q 024724 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWSL 104 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~ 104 (263)
.+++++.+.-.+.|.-.+.++..|| .+..- ..-.-..+=+..+ +.+.+.+++....++.+-=--||
T Consensus 10 tE~r~la~~L~~~g~v~~sv~t~~g---~~~~~----------~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHP 76 (249)
T PF02571_consen 10 TEGRKLAERLAEAGYVIVSVATSYG---GELLK----------PELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHP 76 (249)
T ss_pred HHHHHHHHHHHhcCCEEEEEEhhhh---Hhhhc----------cccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCc
Confidence 5789999999999994456777788 11110 1101113334455 78888888888888777666777
Q ss_pred cccchhhhhHHHHHHhCCceeeccc
Q 024724 105 WTRDIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
+-........+.|++.||.++-|.-
T Consensus 77 fA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 77 FAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred hHHHHHHHHHHHHhhcCcceEEEEc
Confidence 7776668899999999999987643
No 116
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=46.67 E-value=50 Score=29.91 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=15.3
Q ss_pred hhhhHHHHHHhCCceeecc
Q 024724 110 EEEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 110 ~~~~~~~~~~~gi~v~a~~ 128 (263)
-+.+++.|+++||.++.-+
T Consensus 60 L~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 60 LRPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHHhCCCCEEEeC
Confidence 3678899999999988753
No 117
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=46.33 E-value=1.5e+02 Score=25.08 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEeccCC
Q 024724 25 EEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWS 103 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n 103 (263)
..+..++++.+.+.|+..|.....-..|..+.. .++.+.++++.-.+.-+...+. +.+.+.++++...++.+.+---
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGY--DLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCC--CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 445678888888999998876443222211100 1566667776666676766654 6788888888776766544111
Q ss_pred Ccccc-hhhhhHHHHHHhCCce
Q 024724 104 LWTRD-IEEEIIPLCRELGIGI 124 (263)
Q Consensus 104 ~~~~~-~~~~~~~~~~~~gi~v 124 (263)
+.... ...++.+.|+++||.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HhCCCCCHHHHHHHHHHCCCcc
Confidence 11111 1367889999999864
No 118
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=45.23 E-value=1.8e+02 Score=24.20 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcC-CCceEEecc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGV-HPITAVQME 101 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~-~~~~~~q~~ 101 (263)
+.+++..+.+..++.|++.+.-...-. ...+.| +.+.+.+. =--||..+. ++++++++.+. .+|-
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp--~a~e~I---~~l~~~~p---~~lIGAGTVL~~~q~~~a~~aGa~fi----- 89 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTP--AALEAI---RALAKEFP---EALIGAGTVLNPEQARQAIAAGAQFI----- 89 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC--CHHHHH---HHHHHhCc---ccEEccccccCHHHHHHHHHcCCCEE-----
Confidence 789999999999999999999763222 233333 23333333 235788775 88999888876 3332
Q ss_pred CCCcccchhhhhHHHHHHhCCceee
Q 024724 102 WSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 102 ~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
.+ +..+.++++.|+++||.++.
T Consensus 90 Vs---P~~~~ev~~~a~~~~ip~~P 111 (211)
T COG0800 90 VS---PGLNPEVAKAANRYGIPYIP 111 (211)
T ss_pred EC---CCCCHHHHHHHHhCCCcccC
Confidence 22 23347899999999998764
No 119
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=18 Score=30.61 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=27.6
Q ss_pred cccceeccccCC------CCCCCCCCHHHHHHHHHHHHHcCC
Q 024724 5 VSKLGLGCMNLS------SGYSSPVSEEDGISMIKHAFSKGI 40 (263)
Q Consensus 5 vs~lglGt~~~g------~~~~~~~~~~~~~~~l~~A~~~Gi 40 (263)
.|-..+|..++. ..|...++++++.+++..|+.+||
T Consensus 159 ~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 159 LPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred cceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 344555554444 358888999999999999999997
No 120
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=45.16 E-value=34 Score=31.27 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeccCCcC
Q 024724 25 EEDGISMIKHAFSKGITFFDTADVYG 50 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg 50 (263)
......+++.|++.|++++|||....
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc
Confidence 34556899999999999999997665
No 121
>PLN02428 lipoic acid synthase
Probab=44.99 E-value=1.4e+02 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.1
Q ss_pred hhhHHHHHHhCCceeecccCcC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGR 132 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~ 132 (263)
..+-+++.+.|...++.+||.+
T Consensus 304 ~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 304 EFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHHHHHcCCceEEecCccc
Confidence 5677778888999999899885
No 122
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=44.79 E-value=1.5e+02 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.6
Q ss_pred cCCCcccchhhhhHHHHHHhCCceeec
Q 024724 101 EWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
+||++++....++.+..++.|+.++..
T Consensus 192 pY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 192 PYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 999999988899999999999998864
No 123
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=44.75 E-value=2e+02 Score=25.50 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeec
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 127 (263)
++.+.+|++...+. +.|=+.++...+.++++...++++|+..+-.-- ..-.++...|+.+|+.++..
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 67777888776655 555566788888888887778888887554321 11367888999999987654
No 124
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=44.63 E-value=68 Score=29.84 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=33.8
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
+..|.+|.-++.. ..+...+.+++.+.++.+.+.|+..+..--+|| +|++++-+-
T Consensus 163 ~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~ 222 (453)
T PRK13347 163 FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFR 222 (453)
T ss_pred CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHH
Confidence 4456666555532 234445677888888888888886443334677 566665554
No 125
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.81 E-value=2.4e+02 Score=25.19 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceee
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a 126 (263)
++.+.+|++..-|. +.|=+.++...+.++++..-++++|+..+-.-- ..-.++...|+.+|+.++.
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 67788888774433 445566789999999888888999987665421 1236789999999998753
No 126
>PRK09061 D-glutamate deacylase; Validated
Probab=43.74 E-value=2.6e+02 Score=26.54 Aligned_cols=97 Identities=8% Similarity=0.046 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCC-------HHHHHHHhcC---CCceE
Q 024724 28 GISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEAS-------PDTIRRAHGV---HPITA 97 (263)
Q Consensus 28 ~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~-------~~~l~~~~~~---~~~~~ 97 (263)
..++++.|++.|+..|=+...|..+.+...+- ..++.+.+.|..-.+-+.+.+ ...+.++++. ....+
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~--~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~G~rv 248 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYL--ELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAETGAHM 248 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHH--HHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHhCCCE
Confidence 57788999999999998766675555555444 566777777876666555432 1233444332 22222
Q ss_pred EeccCCCccc---chhhhhHHHHHHhCCceee
Q 024724 98 VQMEWSLWTR---DIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 98 ~q~~~n~~~~---~~~~~~~~~~~~~gi~v~a 126 (263)
.-.+.+.... ....++++.+++.|+.+.+
T Consensus 249 ~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~ 280 (509)
T PRK09061 249 HICHVNSTSLRDIDRCLALVEKAQAQGLDVTT 280 (509)
T ss_pred EEEeeccCCcccHHHHHHHHHHHHHcCCcEEE
Confidence 2222332211 1125678888999988864
No 127
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=43.28 E-value=2.1e+02 Score=25.00 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCCeEecc------CCcCCCchhHHHH-hHHHHHHHHHcCCcCE-EEc---CCCCHHHHHHHhc----C
Q 024724 28 GISMIKHAFSKGITFFDTA------DVYGQNANETLLG-KIGEMKKLVEEGKIKY-IGL---SEASPDTIRRAHG----V 92 (263)
Q Consensus 28 ~~~~l~~A~~~Gi~~~DTA------~~Yg~G~sE~~lG-~~~~l~~l~~~Gkir~-iGv---s~~~~~~l~~~~~----~ 92 (263)
+...+..+++.|++++|.- ..++.. .+..+. -.+++++.+++-.||. +.+ .+.+.+.+.+.++ .
T Consensus 75 ~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~-~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T cd01320 75 AYEYLEDAAADGVVYAEIRFSPQLHTRRGLS-FDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQETLELALKY 153 (325)
T ss_pred HHHHHHHHHHcCCEEEEEEeCchhhccCCCC-HHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 5677888889999999853 112211 233332 2678888777644443 222 2334444444433 1
Q ss_pred CCceEEeccCCC----cccchhhhhHHHHHHhCCceeeccc
Q 024724 93 HPITAVQMEWSL----WTRDIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 93 ~~~~~~q~~~n~----~~~~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
..-.++-+.... .....-..+++.|+++|+.+.....
T Consensus 154 ~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 154 RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCC
Confidence 111123222211 1111226889999999998877643
No 128
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=42.74 E-value=1.7e+02 Score=24.47 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=24.8
Q ss_pred eccCCcCCC-chhHHHHhHHHHHHHHHcCCcCEEEcCCC
Q 024724 44 DTADVYGQN-ANETLLGKIGEMKKLVEEGKIKYIGLSEA 81 (263)
Q Consensus 44 DTA~~Yg~G-~sE~~lG~~~~l~~l~~~Gkir~iGvs~~ 81 (263)
-|+..+..| -++-.--++++..+|+++|||+++=+|+.
T Consensus 64 Gtsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGD 102 (235)
T COG2949 64 GTSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGD 102 (235)
T ss_pred eccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecC
Confidence 344434432 23333344888889999999999988864
No 129
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=42.72 E-value=1.2e+02 Score=26.05 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCCeEe-ccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCc
Q 024724 27 DGISMIKHAFSKGITFFD-TADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLW 105 (263)
Q Consensus 27 ~~~~~l~~A~~~Gi~~~D-TA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~ 105 (263)
+.+++.+...+.|+.++= |+..|+ .+. +.+.|.+..+ ...++...+.+++....++++----|++
T Consensus 11 egr~la~~L~~~g~~v~~s~~t~~~---~~~----------~~~~g~~~v~-~g~l~~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 11 DSRAIAKGLIAQGIEILVTVTTSEG---KHL----------YPIHQALTVH-TGALDPQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred HHHHHHHHHHhCCCeEEEEEccCCc---ccc----------ccccCCceEE-ECCCCHHHHHHHHHhcCCCEEEEcCCHH
Confidence 388888888899987664 455676 211 1122322211 2346677788888888887776677777
Q ss_pred ccchhhhhHHHHHHhCCceeecc
Q 024724 106 TRDIEEEIIPLCRELGIGIVPYS 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~~gi~v~a~~ 128 (263)
-..........|++.||.++.|.
T Consensus 77 A~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 77 AAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEE
Confidence 77666889999999999999873
No 130
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=42.66 E-value=53 Score=18.69 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 024724 166 NIYFRIENLAKKYKCTSAQLAL 187 (263)
Q Consensus 166 ~~~~~l~~ia~~~g~s~~q~al 187 (263)
+..+.|.++|++.|.|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 4567999999999999888653
No 131
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=42.43 E-value=2.8e+02 Score=25.64 Aligned_cols=153 Identities=15% Similarity=0.208 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eccCCcCCCch---hHHHHh----------HHHHHHHHHcCCcCEEEcCCCCHHHHHHH
Q 024724 24 SEEDGISMIKHAFSKGITFF-DTADVYGQNAN---ETLLGK----------IGEMKKLVEEGKIKYIGLSEASPDTIRRA 89 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~-DTA~~Yg~G~s---E~~lG~----------~~~l~~l~~~Gkir~iGvs~~~~~~l~~~ 89 (263)
+.+.=.+-++.|++.|...+ |-+. .|. .. +.++.. .+++.+..++++ ++...+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-ggd-l~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~----~~~~mt~d~~~~~ 148 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GGD-LDEIRRAIIEASPVPVGTVPIYQAAVEAARKYG----SVVDMTEDDLFDV 148 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CCC-HHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCC----ChhhCCHHHHHHH
Confidence 55666667899999997644 6553 331 01 222332 678888766655 7778888888777
Q ss_pred hcC---CCceEEeccCCCcccchhhhhHHHHHHhC--CceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhh
Q 024724 90 HGV---HPITAVQMEWSLWTRDIEEEIIPLCRELG--IGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRN 164 (263)
Q Consensus 90 ~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (263)
++. ..+|++-++.-+ ..+.++.+++.+ ++++++ ++.+++.=-. ....-+..
T Consensus 149 ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSR---GGs~~~~WM~----------------~n~~ENPl 204 (431)
T PRK13352 149 IEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSR---GGSFLAAWML----------------HNNKENPL 204 (431)
T ss_pred HHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecC---CHHHHHHHHH----------------HcCCcCch
Confidence 664 566766666554 345677777533 344442 1222221000 00011245
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhh
Q 024724 165 KNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 213 (263)
Q Consensus 165 ~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl 213 (263)
++..+.|-+|+++|.+|++ |..+-=...|.-++...|+.|.+
T Consensus 205 ye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 205 YEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred HHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 6677899999999987642 22222234556666777776655
No 132
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.34 E-value=1.7e+02 Score=25.13 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcC---CcCE-------EEcCCCCH----
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEG---KIKY-------IGLSEASP---- 83 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~G---kir~-------iGvs~~~~---- 83 (263)
+..++.++..++.....+.|+..++...--....+=..+++ ++.++++.+.. ++.. +|++.+..
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~ 94 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVE 94 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHH
Confidence 33457888888888888999999998631100000011121 44555555432 2222 22222222
Q ss_pred HHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceee
Q 024724 84 DTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 84 ~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
..++.+.+ ..++++.+-..+-+-..-.+.+++++++|..+..
T Consensus 95 ~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 95 LFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 22333332 3455655543332222136788888999976654
No 133
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.21 E-value=2.2e+02 Score=24.30 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--------------------------
Q 024724 7 KLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-------------------------- 60 (263)
Q Consensus 7 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-------------------------- 60 (263)
++..|+... +-+++.++.+.|.+.|+..+=..+-|-...+++-+-+
T Consensus 68 ~vi~gv~~~--------~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l 139 (281)
T cd00408 68 PVIAGVGAN--------STREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDL 139 (281)
T ss_pred eEEEecCCc--------cHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCC
Q ss_pred -HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcccCCCC
Q 024724 61 -IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 139 (263)
Q Consensus 61 -~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~ 139 (263)
.+.+.+|.+-..|..+=.|..+...+.++.... .-.+.++.- ....+...-..| +.|.+++.
T Consensus 140 ~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~~~-----~~~~~v~~G--~d~~~~~~l~~G---------~~G~i~~~- 202 (281)
T cd00408 140 SPETIARLAEHPNIVGIKDSSGDLDRLTRLIALL-----GPDFAVLSG--DDDLLLPALALG---------ADGAISGA- 202 (281)
T ss_pred CHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhc-----CCCeEEEEc--chHHHHHHHHcC---------CCEEEehH-
Q ss_pred cCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCC
Q 024724 140 VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIK 219 (263)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~ 219 (263)
..+-+.........+...+.++..+....+..+.+-......-.++++.++.-+ .....++.|-. +
T Consensus 203 --~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~G--~~~g~~R~P~~----------~ 268 (281)
T cd00408 203 --ANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEALFKEGNPAPVKAALALLG--LDAGPVRLPLV----------P 268 (281)
T ss_pred --HhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC--CCCCCcCCCCC----------C
Q ss_pred CCHHHHHHHHHhC
Q 024724 220 LTKEDLKEISDAV 232 (263)
Q Consensus 220 Lt~e~~~~i~~~~ 232 (263)
|++++.++|++..
T Consensus 269 l~~~~~~~l~~~~ 281 (281)
T cd00408 269 LSEEERAKLEALL 281 (281)
T ss_pred CCHHHHHHHHHhC
No 134
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=42.12 E-value=1.6e+02 Score=27.78 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeE--e---ccCCcCCCchhHHHHh-HHHHHHHHHc-CCcCE--EEcCCCCHHHHHHHhc--
Q 024724 23 VSEEDGISMIKHAFSKGITFF--D---TADVYGQNANETLLGK-IGEMKKLVEE-GKIKY--IGLSEASPDTIRRAHG-- 91 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~--D---TA~~Yg~G~sE~~lG~-~~~l~~l~~~-Gkir~--iGvs~~~~~~l~~~~~-- 91 (263)
+++++.-+++..+..-|+.++ | +...|.+ -|+.+-. ++++++..++ |+-+- +-++.-+.+++.+-.+
T Consensus 180 Lsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p--~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a 257 (475)
T CHL00040 180 LSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMR--WRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFA 257 (475)
T ss_pred CCHHHHHHHHHHHHcCCCcccccCccCCCCCCCC--HHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHH
Confidence 478889999999999999988 3 1233432 3444444 7888887755 76444 3334333455543222
Q ss_pred -CCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 92 -VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 92 -~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
......+++.+++.--.....+.++|++.++.+.+.-.+.+.
T Consensus 258 ~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~ga 300 (475)
T CHL00040 258 RELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300 (475)
T ss_pred HHcCCceEEEeccccccchHHHHHHHhhhcCceEEeccccccc
Confidence 234456777777655444567888888899999888777743
No 135
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.87 E-value=2.4e+02 Score=24.71 Aligned_cols=101 Identities=11% Similarity=0.244 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCC----chhHHHHhHHHHHHHHHcCCc-CEEEcCCCCHHHHHHHhc---CCC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANETLLGKIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHG---VHP 94 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G----~sE~~lG~~~~l~~l~~~Gki-r~iGvs~~~~~~l~~~~~---~~~ 94 (263)
+|.+...++++..++.|++-+=...+.|.+ ..|+. --+++..+.. .|++ -.+|++..+..+..++.+ ...
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~-~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQ-AFVATVVETV-AGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHH-HHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 589999999999999999987665555532 22322 2244444444 3544 456998777765544433 244
Q ss_pred ceEEec--c-CCCcccchhhhhHHHH----HHh-CCceeecc
Q 024724 95 ITAVQM--E-WSLWTRDIEEEIIPLC----REL-GIGIVPYS 128 (263)
Q Consensus 95 ~~~~q~--~-~n~~~~~~~~~~~~~~----~~~-gi~v~a~~ 128 (263)
.|.+++ + |.... +++++++. ... ++.++.|.
T Consensus 104 ad~vlv~~P~y~~~~---~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 104 ADGTMLGRPMWLPLD---VDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred CCEEEECCCcCCCCC---HHHHHHHHHHHHHhCCCCcEEEEc
Confidence 454444 3 33332 34555544 445 58888884
No 136
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=41.77 E-value=49 Score=32.52 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC---------CCceEE
Q 024724 28 GISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV---------HPITAV 98 (263)
Q Consensus 28 ~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~---------~~~~~~ 98 (263)
..++|+.|.+++++.+.-. ||. .||+ ..+.+.+++-=|+.||-|. +.+.++-+. ..+-++
T Consensus 95 ideii~iak~~~vdavHPG--YGF-LSEr-----sdFA~av~~AGi~fiGPsp---eVi~~mGDKv~AR~~Ai~agVpvV 163 (1176)
T KOG0369|consen 95 IDEIISIAKKHNVDAVHPG--YGF-LSER-----SDFAQAVQDAGIRFIGPSP---EVIDSMGDKVAARAIAIEAGVPVV 163 (1176)
T ss_pred HHHHHHHHHHcCCCeecCC--ccc-cccc-----hHHHHHHHhcCceEeCCCH---HHHHHhhhHHHHHHHHHHcCCCcc
Confidence 5689999999999999854 553 3443 2344555555678999764 333332111 222222
Q ss_pred eccCCCcccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 99 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 99 q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
--.=-+... .++.+++|+++|..+|--+..++|
T Consensus 164 PGTpgPitt--~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 164 PGTPGPITT--VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred CCCCCCccc--HHHHHHHHHhcCCcEEEeecccCC
Confidence 222222222 378999999999999999998877
No 137
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=41.58 E-value=1.6e+02 Score=27.97 Aligned_cols=102 Identities=10% Similarity=0.058 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCC-------cC---EEEcCCCCHHHHHHHh
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGK-------IK---YIGLSEASPDTIRRAH 90 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gk-------ir---~iGvs~~~~~~l~~~~ 90 (263)
++.++-.++....-+.|+..+++-.-.....+=+++++ |+.|+.+++..+ .| .+|..++..+.++..+
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv 103 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFV 103 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHH
Confidence 46677777777777899999998411111112233444 777777777543 33 4567777766665554
Q ss_pred cC---CCceEEeccCCCcccchhhhhHHHHHHhCCce
Q 024724 91 GV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 124 (263)
Q Consensus 91 ~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 124 (263)
+. ..++++.+.-.+-+-+--...++..++.|..+
T Consensus 104 ~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~ 140 (499)
T PRK12330 104 EKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHA 140 (499)
T ss_pred HHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeE
Confidence 43 45677666544433322356677777777633
No 138
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=41.41 E-value=2.5e+02 Score=24.95 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCcc
Q 024724 61 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 61 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
++.+.+++++-.+. +.|=|-++...+.++++..-.+++|+..+.+-- -.++++.|+++||.++..+.+.+++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccHH
Confidence 56677777654333 344455678888888888888999988776433 2567788999999998877776553
No 139
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=41.39 E-value=41 Score=20.62 Aligned_cols=26 Identities=23% Similarity=0.080 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCC
Q 024724 169 FRIENLAKKYKCTSAQLALAWVLGQG 194 (263)
Q Consensus 169 ~~l~~ia~~~g~s~~q~al~w~l~~~ 194 (263)
+.++++.++.|+|..++|-.--++.+
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gvs~~ 30 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGVGLR 30 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHH
Confidence 46677777788888887765544433
No 140
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=41.11 E-value=2.5e+02 Score=24.65 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCCcCEEEcCC
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGKIKYIGLSE 80 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGvs~ 80 (263)
.++.++..++++.+.+.|++.+.-. | | |.++-. .+.++.+++.+.+..+.+++
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~t---G-G--EPll~~~l~~li~~i~~~~~~~~i~itT 102 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLT---G-G--EPLLRKDLEDIIAALAALPGIRDLALTT 102 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEE---C-C--CCcCccCHHHHHHHHHhcCCCceEEEEc
Confidence 3578899999999999999888753 3 2 334332 34455555554445566544
No 141
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=40.83 E-value=1.7e+02 Score=25.41 Aligned_cols=62 Identities=31% Similarity=0.377 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCcCEEEcCCCC-----H-------HHHHHHhcC-CCce-EEeccCCCcccchhhhhHHHHHHhCC
Q 024724 61 IGEMKKLVEEGKIKYIGLSEAS-----P-------DTIRRAHGV-HPIT-AVQMEWSLWTRDIEEEIIPLCRELGI 122 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~-----~-------~~l~~~~~~-~~~~-~~q~~~n~~~~~~~~~~~~~~~~~gi 122 (263)
++..++++.+|++-+||=+++. . +.+..+++. ..++ .+|+.---.....-.++-+++++.|+
T Consensus 110 lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 110 LELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 7788889999998888866642 1 223334443 2222 34543222222223678888999997
No 142
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=40.81 E-value=77 Score=26.62 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEec----cCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCC----CCHHHHHHHhc
Q 024724 23 VSEEDGISMIKHAFSKGITFFDT----ADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSE----ASPDTIRRAHG 91 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DT----A~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~----~~~~~l~~~~~ 91 (263)
++.+++++-++.+.++|+.+|=- --.|+.+.-++. |++++.-| .-+|=+|| .+.+...++++
T Consensus 57 i~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdey------l~e~~~lG-fe~iEIS~G~i~m~~eek~~lIe 126 (258)
T COG1809 57 IDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEY------LNEAKELG-FEAIEISNGTIPMSTEEKCRLIE 126 (258)
T ss_pred ccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHH------HHHHHHcC-ccEEEecCCeeecchHHHHHHHH
Confidence 58899999999999987765421 122554444444 44454444 34565665 34454444433
No 143
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.77 E-value=73 Score=30.05 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC--eEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEE---cCCCCHHHHHHHh
Q 024724 19 YSSPVSEEDGISMIKHAFSKGIT--FFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIG---LSEASPDTIRRAH 90 (263)
Q Consensus 19 ~~~~~~~~~~~~~l~~A~~~Gi~--~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iG---vs~~~~~~l~~~~ 90 (263)
||.. ...-+..+|+.|-+.|+. .+|||.--. .++.+|+.+..|..+-+--+|-++| |.|.+.+++.++-
T Consensus 447 Ygkd-~a~vak~AI~~a~~~gfDVvLiDTAGR~~--~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn 520 (587)
T KOG0781|consen 447 YGKD-AAGVAKEAIQEARNQGFDVVLIDTAGRMH--NNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFN 520 (587)
T ss_pred cCCC-hHHHHHHHHHHHHhcCCCEEEEecccccc--CChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHH
Confidence 5553 445688999999999977 569996544 4899999777777777778899998 5677777776643
No 144
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=40.70 E-value=1.2e+02 Score=27.62 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC-CCceEEeccCCCcccchh-hhhHHHHHHhC-CceeecccCcCcccCC
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG-IGIVPYSPLGRGFFGG 137 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~v~a~~~l~~G~L~~ 137 (263)
..-++++...--|...=+...+.+.++++++. .++.++..+-|+...-.+ ..+.+.|+++| +.++.-++++.+++..
T Consensus 108 ~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~ 187 (386)
T PF01053_consen 108 YRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQN 187 (386)
T ss_dssp HHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-
T ss_pred hhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeec
Confidence 44455533333333333344577888887764 556678888888765444 78899999999 9999999998876544
No 145
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=40.44 E-value=3.1e+02 Score=27.37 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=69.5
Q ss_pred CchhHHHHh-----HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceee
Q 024724 52 NANETLLGK-----IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 52 G~sE~~lG~-----~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
|-||+-|.. ...+++|.++| |+.+.++.++ .|+++++-++... .|+.++.
T Consensus 382 Gvseediekve~lV~~t~~~lae~g---------fd~drieAil-------~qiEislk~qst~---------fGL~L~~ 436 (998)
T KOG2019|consen 382 GVSEEDIEKVEELVMNTFNKLAETG---------FDNDRIEAIL-------HQIEISLKHQSTG---------FGLSLMQ 436 (998)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhc---------cchHHHHHHH-------HHhhhhhhccccc---------hhHHHHH
Confidence 667766665 56677777766 6667776664 6788888766432 3333333
Q ss_pred cccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHH-HHHHHcCCC-HHHHHHHHhhcCCC-ceeeccCC
Q 024724 127 YSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIE-NLAKKYKCT-SAQLALAWVLGQGD-DVVPIPGT 203 (263)
Q Consensus 127 ~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ia~~~g~s-~~q~al~w~l~~~~-v~~vi~g~ 203 (263)
+.+.. ...+ .+++. . -..-+.+++++ .++++ +-+ ...+.=.|+++++. ++..+-+.
T Consensus 437 ~i~~~--W~~d---~DPfE------------~---Lk~~~~L~~lk~~l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd 495 (998)
T KOG2019|consen 437 SIISK--WIND---MDPFE------------P---LKFEEQLKKLKQRLAEK-SKKLFQPLIKKYILNNPHCFTFSMQPD 495 (998)
T ss_pred HHhhh--hccC---CCccc------------h---hhhhhHHHHHHHHHhhh-chhHHHHHHHHHHhcCCceEEEEecCC
Confidence 22222 1111 11110 0 11223344454 34444 444 44566689999993 33333333
Q ss_pred CcHHHHHHhhhcc-----CCCCCHHHHHHHHHhC
Q 024724 204 TKIKNLDDNIDSL-----RIKLTKEDLKEISDAV 232 (263)
Q Consensus 204 ~~~~~l~enl~a~-----~~~Lt~e~~~~i~~~~ 232 (263)
..-.+..+-.++- ...||++|.++|.+..
T Consensus 496 ~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~ 529 (998)
T KOG2019|consen 496 PEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAG 529 (998)
T ss_pred chhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 2222222222222 1269999999998753
No 146
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=40.40 E-value=1.2e+02 Score=25.07 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHH--cCCcCEEEcC-CCCHHHHHHHhcCCCceEEeccCC
Q 024724 32 IKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVE--EGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 103 (263)
Q Consensus 32 l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~--~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 103 (263)
++.+.++|.+++=-- .+. .|.+.+. .+...++.+ .+++..+||. +.+++.+.++++...++++|++-+
T Consensus 16 a~~~~~~Gad~iGfI-~~~--~S~R~V~-~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 16 AEAAAELGADAIGFV-FYP--KSPRYVS-PEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHHHHcCCCEEEEc-cCC--CCCCcCC-HHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 344456666665432 112 1333333 222233332 3568999986 668899999999999999999754
No 147
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=39.98 E-value=1.2e+02 Score=27.30 Aligned_cols=55 Identities=11% Similarity=0.228 Sum_probs=37.7
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
+..|.+|.-++.. ..+...+.+++.++++.+.+.|+..+-+--+|| +|++++-+-
T Consensus 119 ~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~ 178 (375)
T PRK05628 119 FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWR 178 (375)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHH
Confidence 4566777666542 245556788899999999999987444444687 677776655
No 148
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=39.92 E-value=1.4e+02 Score=26.85 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=37.1
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
+..|.+|.-++.. ..+...+.+++.+.++.+.+.|+..+-.--+|| +|++++-+-
T Consensus 110 ~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~ 169 (374)
T PRK05799 110 VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWK 169 (374)
T ss_pred CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHH
Confidence 4566777655542 245555788899999999999987443333688 477766555
No 149
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=39.87 E-value=2.1e+02 Score=27.80 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEecc--CCcCCCchhHHHHh--HHHHHHHHHcCC-cC---------EEEcCCCCHHH
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTA--DVYGQNANETLLGK--IGEMKKLVEEGK-IK---------YIGLSEASPDT 85 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA--~~Yg~G~sE~~lG~--~~~l~~l~~~Gk-ir---------~iGvs~~~~~~ 85 (263)
+..++.++...+....-+.|+..++.- ..+. .+=+.+++ |+.|+.+++..+ ++ .+|.+++..+.
T Consensus 21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~--~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddv 98 (593)
T PRK14040 21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFD--ACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDV 98 (593)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEecCCcchh--hhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHH
Confidence 334577888888887778899999982 1121 11222333 777777776543 33 37888877666
Q ss_pred HHHHhcC---CCceEEeccCCCcccchhhhhHHHHHHhCCce
Q 024724 86 IRRAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 124 (263)
Q Consensus 86 l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 124 (263)
+++.++. ..++++.+...+-+-+--...+++++++|..+
T Consensus 99 v~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 5554433 45666666443332221357889999999853
No 150
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.84 E-value=2.5e+02 Score=24.37 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCC------cCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCc
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADV------YGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 95 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~------Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 95 (263)
.++.++..++++.-.+.|+..++.... ...+.+ ++.+..+.+...++...+. .+...++++++. .+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~------~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~ 93 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADA------AEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GA 93 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccH------HHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CC
Confidence 357888999999999999999998621 111122 3444445443345555554 477788888775 22
Q ss_pred eEEeccCCCc--------ccch------hhhhHHHHHHhCCceee
Q 024724 96 TAVQMEWSLW--------TRDI------EEEIIPLCRELGIGIVP 126 (263)
Q Consensus 96 ~~~q~~~n~~--------~~~~------~~~~~~~~~~~gi~v~a 126 (263)
+.+.+..+.- .... -.+.+++++++|+.+.+
T Consensus 94 ~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 94 DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3333322211 1111 14789999999988764
No 151
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=38.87 E-value=45 Score=20.37 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCC
Q 024724 171 IENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 218 (263)
Q Consensus 171 l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 218 (263)
|++||+..|+|++.+.. +++.+ .-+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~----~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGP----PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTC----SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHH--HHhCC----CCCCHHHHHHHHHHHHHHCC
Confidence 67899999999998764 45544 34555677777777766554
No 152
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.72 E-value=1.1e+02 Score=28.76 Aligned_cols=16 Identities=0% Similarity=0.057 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHcC
Q 024724 24 SEEDGISMIKHAFSKG 39 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~G 39 (263)
+++...++++...+.|
T Consensus 253 ~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 253 NRKKFQEFCEEIIARN 268 (497)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4455666666666654
No 153
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=38.56 E-value=1.6e+02 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCeEecc
Q 024724 29 ISMIKHAFSKGITFFDTA 46 (263)
Q Consensus 29 ~~~l~~A~~~Gi~~~DTA 46 (263)
.+.++.|++.|++.+=-=
T Consensus 24 ~~~ve~al~~Gv~~vQlR 41 (211)
T COG0352 24 LEWVEAALKGGVTAVQLR 41 (211)
T ss_pred HHHHHHHHhCCCeEEEEe
Confidence 789999999999988543
No 154
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.53 E-value=1.3e+02 Score=27.12 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=35.1
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
+..|.+|.-++.. ..+...+.+++.+.++.+.+.|+..+-.--+|| +|++++-+-
T Consensus 111 ~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~ 170 (377)
T PRK08599 111 VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFK 170 (377)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHH
Confidence 3455555554432 244445778889999999999987544334677 477776665
No 155
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=38.24 E-value=1.2e+02 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=29.4
Q ss_pred ccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcCC
Q 024724 6 SKLGLGCMNLSSGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ 51 (263)
Q Consensus 6 s~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 51 (263)
-++.+-|..+ +.++-.++.+.+.++|..|+-|+.-+..
T Consensus 128 lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~ 165 (228)
T COG0274 128 LKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSA 165 (228)
T ss_pred EEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 3555666544 6777899999999999999999985543
No 156
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.21 E-value=1.6e+02 Score=24.61 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEeccCC
Q 024724 25 EEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWS 103 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n 103 (263)
..+..+.++.+.+.|+.++-.......|..+.. .++.+.++++.-.+.-+..... +.+.+.++++...++.+++---
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~--~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY--DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 445677888888999998887654432222111 2666777777666776666654 6778888887766666655222
Q ss_pred Ccccc-hhhhhHHHHHHh
Q 024724 104 LWTRD-IEEEIIPLCREL 120 (263)
Q Consensus 104 ~~~~~-~~~~~~~~~~~~ 120 (263)
+.... ...++.+.|+++
T Consensus 226 l~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 226 FHFGEYTIAELKEYLAER 243 (243)
T ss_pred HHcCCCCHHHHHHHHhhC
Confidence 22221 124566666653
No 157
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.84 E-value=2e+02 Score=25.15 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhH----HH--H-hHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANET----LL--G-KIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPI 95 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~----~l--G-~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~ 95 (263)
+.+++.++++.+.+.|+.+|+++.-........ .. + .++.+..+++.=++-=++..+. +.+.+.++++....
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~a 305 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKA 305 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 567788888888888888887654322100000 00 1 0344455555445555666665 46777777776666
Q ss_pred eEEec
Q 024724 96 TAVQM 100 (263)
Q Consensus 96 ~~~q~ 100 (263)
|.+++
T Consensus 306 D~V~i 310 (327)
T cd02803 306 DLVAL 310 (327)
T ss_pred Ceeee
Confidence 66655
No 158
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=37.59 E-value=1.9e+02 Score=28.08 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcC-CcCEE---------EcCCCCHHHHHHH
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEG-KIKYI---------GLSEASPDTIRRA 89 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~G-kir~i---------Gvs~~~~~~l~~~ 89 (263)
.++.++-.++++..-+.|+..++...--....+=+++++ |+.|+.+++.. .++.. |..++..+.+++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 347788888888888999999998410000000112222 77777776632 23333 3444544444433
Q ss_pred hc---CCCceEEeccCCCcccchhhhhHHHHHHhCCceeec
Q 024724 90 HG---VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 90 ~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
++ ...++++.+...+-+..--...+++++++|..+...
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
Confidence 22 245666665544433222256778889999866643
No 159
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=37.58 E-value=3e+02 Score=24.64 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCCcCEEEcCC--CCHHHHHHHhcCCCceE
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGKIKYIGLSE--ASPDTIRRAHGVHPITA 97 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGvs~--~~~~~l~~~~~~~~~~~ 97 (263)
.++.++..++++.+.+.|+..|.-. | -|.++-. .+.++.+++.|..-.+=... .+.+.++.+.+ ..++.
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~---G---GEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~-~g~~~ 117 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFS---G---GEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKD-AGLDH 117 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE---C---CccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHH-cCCCE
Confidence 4678889999999999999888743 3 2444432 45566677777533321111 24455555544 33455
Q ss_pred EeccCCCcccc-----------hh--hhhHHHHHHhCCceeecccC
Q 024724 98 VQMEWSLWTRD-----------IE--EEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 98 ~q~~~n~~~~~-----------~~--~~~~~~~~~~gi~v~a~~~l 130 (263)
+|+...-.+.. .+ .+.++.++++|+.+....++
T Consensus 118 v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv 163 (378)
T PRK05301 118 IQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI 163 (378)
T ss_pred EEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe
Confidence 55544432211 11 23455667777766554443
No 160
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=37.29 E-value=68 Score=20.92 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCHHHHH
Q 024724 170 RIENLAKKYKCTSAQLA 186 (263)
Q Consensus 170 ~l~~ia~~~g~s~~q~a 186 (263)
.+.+||++.|+++.++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 78999999999999876
No 161
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=37.23 E-value=3.3e+02 Score=24.96 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcC-CCceEEeccCCCcccch
Q 024724 31 MIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI 109 (263)
Q Consensus 31 ~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~ 109 (263)
++..-...|=+.+-++..|| .+..+++. . |++-|.--.+ |...+++.++++++- .+..+...-=|+-..-.
T Consensus 93 ai~~la~aGD~iVss~~LYG--GT~~lf~~--t---l~~~Gi~v~f-vd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~ 164 (426)
T COG2873 93 AILNLAGAGDNIVSSSKLYG--GTYNLFSH--T---LKRLGIEVRF-VDPDDPENFEAAIDENTKAVFAETIGNPGLDVL 164 (426)
T ss_pred HHHHhccCCCeeEeeccccC--chHHHHHH--H---HHhcCcEEEE-eCCCCHHHHHHHhCcccceEEEEeccCCCcccc
Confidence 34444467889999999998 35665551 1 3444431111 234457888777664 55556665555533322
Q ss_pred h-hhhHHHHHHhCCceeecccCcCcccCCC
Q 024724 110 E-EEIIPLCRELGIGIVPYSPLGRGFFGGK 138 (263)
Q Consensus 110 ~-~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 138 (263)
+ +.+-+.|+++||.++.-+.++.+.|...
T Consensus 165 Die~ia~iAh~~gvpliVDNT~atpyl~rP 194 (426)
T COG2873 165 DIEAIAEIAHRHGVPLIVDNTFATPYLCRP 194 (426)
T ss_pred CHHHHHHHHHHcCCcEEEecCCCcceecch
Confidence 2 6788999999999999998888766543
No 162
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.95 E-value=69 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 024724 162 DRNKNIYFRIENLAKKYKCTSAQLALAWV 190 (263)
Q Consensus 162 ~~~~~~~~~l~~ia~~~g~s~~q~al~w~ 190 (263)
..+..+.....+||++.|+|+.++.-.+.
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a 72 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAA 72 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677888999999999999999876554
No 163
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=36.95 E-value=2.9e+02 Score=25.50 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHH---HHHhcC-CCceEEeccC
Q 024724 28 GISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTI---RRAHGV-HPITAVQMEW 102 (263)
Q Consensus 28 ~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l---~~~~~~-~~~~~~q~~~ 102 (263)
+..++..-+..|...+=+...|| |...-|++... ++-+..++ +...+ .++.+. ....++..+-
T Consensus 105 ~~~al~~L~~~g~~iV~~~~~Y~--------gT~~~l~~~~~----~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPs 172 (409)
T KOG0053|consen 105 ITVALLHLLPAGDHIVATGDVYG--------GTLRILRKFLP----KFGGEGDFVDVDDLKKILKAIKENTKAVFLESPS 172 (409)
T ss_pred HHHHHHHhcCCCCcEEEeCCCcc--------cHHHHHHHHHH----HhCceeeeechhhHHHHHHhhccCceEEEEECCC
Confidence 33444444566777777777777 22233333332 22222333 33444 444443 4556778889
Q ss_pred CCcccchh-hhhHHHHHHhCCceeecccCcCcccCC
Q 024724 103 SLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGG 137 (263)
Q Consensus 103 n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L~~ 137 (263)
||+..-++ ..+.+.|+++|+.++.-.+++.+.+..
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~ 208 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQD 208 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCcCcccccC
Confidence 98876544 789999999999999999999885543
No 164
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.27 E-value=2.8e+02 Score=23.77 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCch-hHHHHhHHHHHHHHHcCCcCEEEcCCCC-HHHHHHHh-cCCC-ceEEe
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNAN-ETLLGKIGEMKKLVEEGKIKYIGLSEAS-PDTIRRAH-GVHP-ITAVQ 99 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~s-E~~lG~~~~l~~l~~~Gkir~iGvs~~~-~~~l~~~~-~~~~-~~~~q 99 (263)
+.+...++++...+.|++++.-.--|..--. =..|- ++-.+..+.|. +-.. -+.++++. +... +-+++
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq--~a~~~AL~~G~------~~~~~~~~~~~~r~~~~~~p~vlm 95 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQ--AASLRALAAGV------TLADVFELVREIREKDPTIPIVLM 95 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHH--HHHHHHHHcCC------CHHHHHHHHHHHHhcCCCCCEEEE
Confidence 7889999999999999999987644432111 12222 22233333332 1111 12222222 1111 22577
Q ss_pred ccCCCcccchhhhhHHHHHHhCC
Q 024724 100 MEWSLWTRDIEEEIIPLCRELGI 122 (263)
Q Consensus 100 ~~~n~~~~~~~~~~~~~~~~~gi 122 (263)
.-||++.+.-.+++++.|++.|+
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCC
Confidence 78887766434677888888877
No 165
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=36.01 E-value=2.5e+02 Score=26.41 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcC---C----cCE---EEcCCCCHHHHH
Q 024724 20 SSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEG---K----IKY---IGLSEASPDTIR 87 (263)
Q Consensus 20 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~G---k----ir~---iGvs~~~~~~l~ 87 (263)
...+..++...+....=+.|+..+++..--....+=+++.+ |+.|+.+++.= + .|. +|..++..+.++
T Consensus 29 atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~ 108 (468)
T PRK12581 29 ATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVD 108 (468)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHH
Confidence 33456677777777666789998887411111112233333 66666666543 2 344 667777667666
Q ss_pred HHhcC---CCceEEeccCCCcccchhhhhHHHHHHhCCcee
Q 024724 88 RAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIV 125 (263)
Q Consensus 88 ~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 125 (263)
.+++. ..++++.+--.+-+-+.-...++.+++.|..+.
T Consensus 109 ~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~ 149 (468)
T PRK12581 109 KFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQ 149 (468)
T ss_pred HHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEE
Confidence 65543 567777765444443323678888888887654
No 166
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=35.76 E-value=2.3e+02 Score=22.70 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEeccC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 102 (263)
+.++..++++.+++.|++.+.....-. . ..+.+..+++.-.--.+|..+. +.+++..+....- +.+...
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~--~------~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga-~~i~~p- 83 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP--G------ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGA-QFIVSP- 83 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh--h------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEEEcC-
Confidence 788999999999999999998764422 1 2335666666543345777554 5888888776522 223221
Q ss_pred CCcccchhhhhHHHHHHhCCceee
Q 024724 103 SLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 103 n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
....++...|+++++.++.
T Consensus 84 -----~~~~~~~~~~~~~~~~~i~ 102 (190)
T cd00452 84 -----GLDPEVVKAANRAGIPLLP 102 (190)
T ss_pred -----CCCHHHHHHHHHcCCcEEC
Confidence 1135788999998887654
No 167
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=35.68 E-value=53 Score=24.23 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQ 51 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 51 (263)
+.+.+.+....+++.|+..||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5677899999999999999999999863
No 168
>cd03681 MM_CoA_mutase_MeaA Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.
Probab=35.63 E-value=1.2e+02 Score=27.91 Aligned_cols=90 Identities=16% Similarity=0.300 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCCe----EeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEe
Q 024724 24 SEEDGISMIKHAFSKGITF----FDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQ 99 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~----~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q 99 (263)
+.+++.+.++..++.|.+- ||.+..+|........ .|.|...|++-.+.+.++.+++-.+++-+-
T Consensus 12 t~ee~N~~~~~~L~~G~t~ls~afD~~t~~G~D~d~p~~-----------~gevG~~Gv~i~s~~Dm~~L~~gI~L~~v~ 80 (407)
T cd03681 12 TAEESNELYRKNLAKGQTGLSVAFDLPTQTGYDSDHILA-----------KGEVGKVGVPINHLGDMRILFNQIPLEQMN 80 (407)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeccccccCCCCCcccc-----------cccccCcCCCcCCHHHHHHHHcCCCcccce
Confidence 6789999999999998774 4666667653333222 468888999999999999998876665444
Q ss_pred ccCCCcccc--hhhhhHHHHHHhCCce
Q 024724 100 MEWSLWTRD--IEEEIIPLCRELGIGI 124 (263)
Q Consensus 100 ~~~n~~~~~--~~~~~~~~~~~~gi~v 124 (263)
+.+++-.+. ...-++..++++|+..
T Consensus 81 ~s~t~~a~a~~lla~~~a~ae~~g~~~ 107 (407)
T cd03681 81 TSMTINATAMWLLSLYVAVAEEQGADV 107 (407)
T ss_pred eEEEeCCcHHHHHHHHHHHHHHcCCCH
Confidence 444432221 1134567777877643
No 169
>PRK09875 putative hydrolase; Provisional
Probab=35.14 E-value=1.4e+02 Score=26.12 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCC-eEeccCCcCCCchhH
Q 024724 26 EDGISMIKHAFSKGIT-FFDTADVYGQNANET 56 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~G~sE~ 56 (263)
+.+.+=|..+.++|++ .+|.. .+|.|++=.
T Consensus 34 ~~~~~el~~~~~~Gg~tiVd~T-~~g~GRd~~ 64 (292)
T PRK09875 34 AFICQEMNDLMTRGVRNVIEMT-NRYMGRNAQ 64 (292)
T ss_pred HHHHHHHHHHHHhCCCeEEecC-CCccCcCHH
Confidence 3344444444445444 33443 344334433
No 170
>PLN02591 tryptophan synthase
Probab=34.87 E-value=2.9e+02 Score=23.57 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYG 50 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 50 (263)
+.+...++++...+.|++.+.-.--|.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfS 40 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYS 40 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 788899999999999999998754443
No 171
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.60 E-value=1.5e+02 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCc
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNA 53 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~ 53 (263)
+.+++.++++.|.+.|++-+=..++|-.|.
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~g~ 47 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLHGR 47 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccCCc
Confidence 789999999999999999776666665553
No 172
>PHA02128 hypothetical protein
Probab=34.44 E-value=1.1e+02 Score=22.50 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhc-----------------CCC-ceEEec---cCCCcccchhhhhHHHHHH
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHG-----------------VHP-ITAVQM---EWSLWTRDIEEEIIPLCRE 119 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~-----------------~~~-~~~~q~---~~n~~~~~~~~~~~~~~~~ 119 (263)
+.-..++..+|-+|-|-+..-+...++.... ..| +.+.++ +|.+-.+....++.+++-.
T Consensus 63 ~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwagt 142 (151)
T PHA02128 63 LHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWAGT 142 (151)
T ss_pred HHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhccc
Confidence 6777889999999999887665555544322 222 234444 6777666556899999999
Q ss_pred hCCceeec
Q 024724 120 LGIGIVPY 127 (263)
Q Consensus 120 ~gi~v~a~ 127 (263)
+|+.++.+
T Consensus 143 hgvefvim 150 (151)
T PHA02128 143 HGVEFVIM 150 (151)
T ss_pred CceEEEEe
Confidence 99988754
No 173
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=34.03 E-value=1.9e+02 Score=23.63 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCC-C
Q 024724 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWS-L 104 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~ 104 (263)
.....+++..++.|....=....- +. +...+|.+.|-. .+-..-.+.+.|.++++-....++-+..+ .
T Consensus 9 ~~G~~v~~~L~~~~~~V~~l~R~~----~~------~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 9 NQGRSVVRALLSAGFSVRALVRDP----SS------DRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp HHHHHHHHHHHHTTGCEEEEESSS----HH------HHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred HHHHHHHHHHHhCCCCcEEEEecc----ch------hhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchh
Confidence 456667777777665543322211 11 234556777764 45555567888988888655544444433 2
Q ss_pred cccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 105 WTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
-.......++++|++.||..+.++.++..
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhhhhHHHhhhccccceEEEEEeccc
Confidence 22223478999999999999999888765
No 174
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.90 E-value=2.2e+02 Score=27.65 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcC-CcCE---------EEcCCCCHHHHHHH
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEG-KIKY---------IGLSEASPDTIRRA 89 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~G-kir~---------iGvs~~~~~~l~~~ 89 (263)
.++.++..+++...-+.|+..++...--....+=+++.+ |+.|.++++.. .++. +|.+++..+.+++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 346778888888888899999998310000001122333 77888877763 2332 34555655554443
Q ss_pred hcC---CCceEEeccCCCcccchhhhhHHHHHHhCCceee
Q 024724 90 HGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 90 ~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
++. ..++++.+...+-+..--...+++++++|..+.+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEE
Confidence 332 4567766655543332235677888888876653
No 175
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=33.68 E-value=4.1e+02 Score=25.01 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCC----chhHHHHhHHHHHHHHH----cCCcCEEEcC--CCCHHHHHHHhcC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANETLLGKIGEMKKLVE----EGKIKYIGLS--EASPDTIRRAHGV 92 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G----~sE~~lG~~~~l~~l~~----~Gkir~iGvs--~~~~~~l~~~~~~ 92 (263)
++.++..+.++.+.+.|++.|--- .|.+ .-|.+. +.++.+++ .|.++.++++ ..+.+.++++.+.
T Consensus 115 Ls~EEI~~ea~~~~~~G~~~i~Lv--sGe~p~~~~~eyi~---e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lkea 189 (469)
T PRK09613 115 LTQEEIREEVKALEDMGHKRLALV--AGEDPPNCDIEYIL---ESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEA 189 (469)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--eCCCCCCCCHHHHH---HHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHc
Confidence 578899999999999999987552 3322 123332 34444443 4777777764 4577888777665
Q ss_pred --CCceEEeccCCC-----ccc-----chh--hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCC
Q 024724 93 --HPITAVQMEWSL-----WTR-----DIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKG 158 (263)
Q Consensus 93 --~~~~~~q~~~n~-----~~~-----~~~--~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~ 158 (263)
..+.++|-.||. +++ +.+ .+.++.+++.|+.-+.. |.|.|- +
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~-----G~L~GL-------------------g 245 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI-----GVLFGL-------------------Y 245 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe-----EEEEcC-------------------C
Confidence 344455655552 111 122 46788888889874443 333332 1
Q ss_pred cchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeecc---CCCcHHHHHHhhhccC
Q 024724 159 ENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIP---GTTKIKNLDDNIDSLR 217 (263)
Q Consensus 159 ~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~---g~~~~~~l~enl~a~~ 217 (263)
++..+....+..++.+-+.+|+.|..+.+-.+.-.+ .+++- ..-+.+++.+.++++.
T Consensus 246 e~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~--Gtpl~~~~~~vsd~e~lriiA~~R 305 (469)
T PRK09613 246 DYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPAD--GSDLENFPYLVSDEDFKKIVAILR 305 (469)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCccccccceecCC--CCCcccCCCCCCHHHHHHHHHHHH
Confidence 122344555556666666666655554443333222 22221 1125556666665553
No 176
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=33.66 E-value=2.1e+02 Score=24.57 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCC----eEeccCC-cCCCchhHHHHhHHHHHHHHHc--CCcCEEEcCCCC
Q 024724 26 EDGISMIKHAFSKGIT----FFDTADV-YGQNANETLLGKIGEMKKLVEE--GKIKYIGLSEAS 82 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~----~~DTA~~-Yg~G~sE~~lG~~~~l~~l~~~--Gkir~iGvs~~~ 82 (263)
+.+.++++.|.++||. +||..-. .+.+ .+..+-.+++++.+++. |.=--+|+||-+
T Consensus 138 ~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~-~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 138 AVAKELVEKADEYGIPPEDIYIDPLVLPLSAA-QDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC-hHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 4467788889999996 8898755 3332 23333347778888877 888889999965
No 177
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=33.64 E-value=1.7e+02 Score=26.74 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCCeEeccCCcCC--CchhHHHHhHHHHHHHHHcCCcCEEEcCCC
Q 024724 27 DGISMIKHAFSKGITFFDTADVYGQ--NANETLLGKIGEMKKLVEEGKIKYIGLSEA 81 (263)
Q Consensus 27 ~~~~~l~~A~~~Gi~~~DTA~~Yg~--G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~ 81 (263)
+..++++.|++.|+.-|=+...|.. ..++..+- +.++.+++-|.+-.+-.-+.
T Consensus 168 ~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~--~~~~~a~~~g~~v~~H~e~~ 222 (415)
T cd01297 168 KMRELLREALEAGALGISTGLAYAPRLYAGTAELV--ALARVAARYGGVYQTHVRYE 222 (415)
T ss_pred HHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHH--HHHHHHHHcCCEEEEEECcc
Confidence 4566788889999988766556643 34555555 56677777788766655554
No 178
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=33.59 E-value=3.6e+02 Score=24.33 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHHHcCCcCEEEcCCCCHHHHHHHhcC-CCceEEeccCCCcccch-hhhhHHHHHHhCCceeecccCcCcc
Q 024724 63 EMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 63 ~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
.+..+...+.+.-.-+...+.+.++++++. .++.++..+-|+.-.-. -..+.+.|+++|+-++.-.+.+.+.
T Consensus 106 ~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 106 LLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred HHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 344444455444444445577788777753 44445555666544322 2678999999999998777766553
No 179
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=33.53 E-value=46 Score=23.19 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.8
Q ss_pred hhhHHHHHHhCCceeecccCcCccc
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
..+++.++++||.++-..+|++-+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 6799999999999999999998775
No 180
>PTZ00081 enolase; Provisional
Probab=33.23 E-value=4.1e+02 Score=24.80 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=49.2
Q ss_pred HHHHHHHHHcC--CcCEEEc--CCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeec
Q 024724 61 IGEMKKLVEEG--KIKYIGL--SEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 61 ~~~l~~l~~~G--kir~iGv--s~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 127 (263)
|+.+.+|.++- .+.-+|= +..++..++++++..-.+++|+..|-.-- ..-.++...|+++|+.++..
T Consensus 311 ~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 311 WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 88888888763 5544443 24568899999998888899988875432 12367899999999988763
No 181
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=33.08 E-value=1.6e+02 Score=23.53 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC----eEec----------cCCc--------------CCCchhHHHHhHHHHHHHHHc
Q 024724 19 YSSPVSEEDGISMIKHAFSKGIT----FFDT----------ADVY--------------GQNANETLLGKIGEMKKLVEE 70 (263)
Q Consensus 19 ~~~~~~~~~~~~~l~~A~~~Gi~----~~DT----------A~~Y--------------g~G~sE~~lG~~~~l~~l~~~ 70 (263)
|-.++++++..+-|+..++.|-. |-|. +..| |.-++..+|.++++..+..-.
T Consensus 72 YLPpLtdeqI~kQVeYli~~GW~pclEf~~~~~~~~r~~~~s~~yyD~rYWtMWKLPMFg~tD~~~Vl~Ei~eC~kayP~ 151 (176)
T PLN02289 72 YLPDLTDEELAKEVDYLLRNKWVPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDSAQVLKELEEAKKAYPN 151 (176)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCeeeeeeccCCceeEecCCCCCCcccCceeEEeccccCCCCCHHHHHHHHHHHHHHCCc
Confidence 44567899999999999999833 3322 2222 223566777777777777778
Q ss_pred CCcCEEEcCCCC
Q 024724 71 GKIKYIGLSEAS 82 (263)
Q Consensus 71 Gkir~iGvs~~~ 82 (263)
..||-+|+.|..
T Consensus 152 ~yIRiigFDn~r 163 (176)
T PLN02289 152 AFIRIIGFDNTR 163 (176)
T ss_pred ceEEEEEEECCC
Confidence 899999998864
No 182
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=32.90 E-value=3.7e+02 Score=24.20 Aligned_cols=97 Identities=12% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcC-CcCEEEcCCCCHHHHHHHhcCCCceEEec
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~q~ 100 (263)
.++.++..++++.--+.|+..++...-. .++.- ++.++++.+.+ ..+..+++....+.++.+.+. .++.+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~---~~~~~---~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i 91 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPA---MGEEE---RAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHI 91 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHH---HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEE
Confidence 4588999999999999999999986211 12211 45566666654 366677777778888887765 2333333
Q ss_pred cCCCc--------ccchh------hhhHHHHHHhCCcee
Q 024724 101 EWSLW--------TRDIE------EEIIPLCRELGIGIV 125 (263)
Q Consensus 101 ~~n~~--------~~~~~------~~~~~~~~~~gi~v~ 125 (263)
....- ....+ .+.+++++++|..+.
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 22221 11111 368889999998754
No 183
>PF13518 HTH_28: Helix-turn-helix domain
Probab=32.76 E-value=51 Score=19.87 Aligned_cols=21 Identities=10% Similarity=0.556 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHhh
Q 024724 170 RIENLAKKYKCTSAQLALAWVL 191 (263)
Q Consensus 170 ~l~~ia~~~g~s~~q~al~w~l 191 (263)
.+.++|+++|+|..++ .+|+-
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~ 34 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIK 34 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHH
Confidence 4677888888888765 66664
No 184
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=32.62 E-value=1.2e+02 Score=25.74 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCcccccceeccccCCCCCCCC--CCHHHHHHHHHHH----HHcCCCeEeccC
Q 024724 1 MVLQVSKLGLGCMNLSSGYSSP--VSEEDGISMIKHA----FSKGITFFDTAD 47 (263)
Q Consensus 1 ~~~~vs~lglGt~~~g~~~~~~--~~~~~~~~~l~~A----~~~Gi~~~DTA~ 47 (263)
.|+.+|.+||.+-+= -.+|+. ..++++.++++.| .++||+.|--|.
T Consensus 66 tgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 66 TGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred hCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 378888998886431 123433 2345666666655 478999998873
No 185
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.57 E-value=1.8e+02 Score=24.63 Aligned_cols=72 Identities=19% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCcc-cchhhhhHHHHHHhCCceeecccCcCc
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
++.+.++. .+.=-+.|=|-++...+.++++...++++|+.....- -..-..+...|+.+|+.++..+.+..+
T Consensus 167 ~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 167 LAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 44555555 2322344555567777888888778888888766432 112368899999999998876544443
No 186
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=32.38 E-value=1.8e+02 Score=25.82 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCC------CchhH---HH---Hh--------------HHHHHHHHHcCCcCEE-
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQ------NANET---LL---GK--------------IGEMKKLVEEGKIKYI- 76 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~------G~sE~---~l---G~--------------~~~l~~l~~~Gkir~i- 76 (263)
+.+.+.+.+..+.+.|...||.+..|.. |-.|- .. .. .-+|.=|.+.|.|+..
T Consensus 58 p~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL~PL~~~~li~~~~ 137 (310)
T TIGR01851 58 PDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALMRPLVEAGILPADF 137 (310)
T ss_pred CHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHHHHHHHcCCccccc
Confidence 5567888998888999999999976642 22332 11 11 5677788888888532
Q ss_pred -----Ec---CCCCHHHHHHHhcCCC-ceE--EeccCCCc-ccchhhhhHHHHHH-hCCceeec-ccCcCcccCCC
Q 024724 77 -----GL---SEASPDTIRRAHGVHP-ITA--VQMEWSLW-TRDIEEEIIPLCRE-LGIGIVPY-SPLGRGFFGGK 138 (263)
Q Consensus 77 -----Gv---s~~~~~~l~~~~~~~~-~~~--~q~~~n~~-~~~~~~~~~~~~~~-~gi~v~a~-~~l~~G~L~~~ 138 (263)
++ |+-......+...... ... +--.|.+. .++...++...+.. ..+.+... .|+.+|+|+.-
T Consensus 138 ~~~~~a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~~~v~FtPhl~p~~RGil~Ti 213 (310)
T TIGR01851 138 PITINAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTI 213 (310)
T ss_pred eEEEEeccccCccChhhhHHhhhcccchhhccCceeccCCCCCCcHHHHHHHhCCCCCEEEEeEEccccCcEEEEE
Confidence 33 3344444444442221 111 22378887 66655555555432 23444433 78888988765
No 187
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.31 E-value=4e+02 Score=24.50 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHHHHcC----CcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeec
Q 024724 61 IGEMKKLVEEG----KIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 61 ~~~l~~l~~~G----kir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~ 127 (263)
++.+.+|++.. .=-+.|=|.++...+.++++..-++++|+...-.-- ..-.++...|+.+|+.++..
T Consensus 280 ~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH 351 (415)
T cd03324 280 ILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPH 351 (415)
T ss_pred HHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEc
Confidence 67777777663 222334455678888888888788889887664321 12368899999999988765
No 188
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=32.13 E-value=3.7e+02 Score=23.98 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=37.8
Q ss_pred CHHHHHHHhcC-CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCccc
Q 024724 82 SPDTIRRAHGV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 82 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
+.+.++++++. .++.++....|+.-.- .-.++.+.|+++|+.++.-.+.+.+.+
T Consensus 114 d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 114 DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 46777777653 4455556667764432 236899999999999998888877655
No 189
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=31.86 E-value=1.7e+02 Score=22.55 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCCcCEEEc---CCCCHHHHHHHhcCCCceEE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGKIKYIGL---SEASPDTIRRAHGVHPITAV 98 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGv---s~~~~~~l~~~~~~~~~~~~ 98 (263)
+...+..+.+.-.++|++.|=.-+.|. -++++|+ ...|.+.- .+|--+-| |.+-++.++++++.. +.++
T Consensus 28 P~r~sy~V~kyL~~~GY~ViPVNP~~~---~~eiLG~k~y~sL~dIp--e~IDiVdvFR~~e~~~~i~~eal~~~-~kv~ 101 (140)
T COG1832 28 PDRPSYRVAKYLQQKGYRVIPVNPKLA---GEEILGEKVYPSLADIP--EPIDIVDVFRRSEAAPEVAREALEKG-AKVV 101 (140)
T ss_pred CCccHHHHHHHHHHCCCEEEeeCcccc---hHHhcCchhhhcHHhCC--CCCcEEEEecChhhhHHHHHHHHhhC-CCeE
Confidence 344578888888899999999888776 6899997 33444433 45554444 455667777777765 4555
Q ss_pred eccCCCcccchhhhhHHHHHHhCCceee
Q 024724 99 QMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 99 q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
-.+..+.+. +..+.+++.|+.++.
T Consensus 102 W~QlGi~n~----ea~~~~~~aG~~vV~ 125 (140)
T COG1832 102 WLQLGIRNE----EAAEKARDAGLDVVM 125 (140)
T ss_pred EEecCcCCH----HHHHHHHHhCcHHHH
Confidence 555666544 467777888875543
No 190
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=31.59 E-value=49 Score=28.91 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcC---CCeEeccCCcCC
Q 024724 27 DGISMIKHAFSKG---ITFFDTADVYGQ 51 (263)
Q Consensus 27 ~~~~~l~~A~~~G---i~~~DTA~~Yg~ 51 (263)
.+.++++.|-+.| |+|+||+..|..
T Consensus 138 KAlRlm~~AekF~lPiitfIDT~GAypG 165 (317)
T COG0825 138 KALRLMKLAEKFGLPIITFIDTPGAYPG 165 (317)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 5778888888888 679999999974
No 191
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=30.74 E-value=2.8e+02 Score=26.12 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcC-CcCE---------EEcCCCCHHHHHHH
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEG-KIKY---------IGLSEASPDTIRRA 89 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~G-kir~---------iGvs~~~~~~l~~~ 89 (263)
.++.++-.++++..-+.|+..++.-.--....+=+++.+ |+.++.+++.. .++. +|..++..+.++..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 347788888888888999999998200000000112222 77777777653 2333 23333333333332
Q ss_pred hc---CCCceEEeccCCCcccchhhhhHHHHHHhCCceee
Q 024724 90 HG---VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 90 ~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
++ ...++++.+...+-+..--...+++++++|..+.+
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 140 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQG 140 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEE
Confidence 22 24566666655444332235677888899876653
No 192
>PRK06298 type III secretion system protein; Validated
Probab=30.67 E-value=39 Score=30.50 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.3
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.++++||.++..-||++.+.......+.+|
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~~~evg~~IP 327 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIP 327 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCcCC
Confidence 57999999999999999999998875443333444
No 193
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=30.38 E-value=4.4e+02 Score=24.33 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCCe-EeccCCcCC---------CchhHHHHh---HHHHHHHHHcCCcCEEEcCCCCHHHHHHHh
Q 024724 24 SEEDGISMIKHAFSKGITF-FDTADVYGQ---------NANETLLGK---IGEMKKLVEEGKIKYIGLSEASPDTIRRAH 90 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~-~DTA~~Yg~---------G~sE~~lG~---~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~ 90 (263)
+.+.=.+-++.|++.|... .|-|. .|. ..+.-.+|. .+++.+..+ .+...+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~-------~~~~mt~d~~~~~i 146 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHG-------AVEDMDEDDMFRAI 146 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCCCccCccHHHHHHHhcC-------ChhhCCHHHHHHHH
Confidence 5555566689999999764 46553 331 011222232 555555432 66777888877766
Q ss_pred cC---CCceEEeccCCCcccchhhhhHHHHHHhC--CceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhH
Q 024724 91 GV---HPITAVQMEWSLWTRDIEEEIIPLCRELG--IGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNK 165 (263)
Q Consensus 91 ~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (263)
+. ..+|++-++.-+ ..+.++.+++.+ ++++++ ++.++++=-. ....-+..+
T Consensus 147 e~qa~dGVDfmTiH~Gi-----~~~~~~~~~~~~R~~giVSR---GGs~~~~WM~----------------~~~~ENPly 202 (423)
T TIGR00190 147 EKQAKDGVDFMTIHAGV-----LLEYVERLKRSGRITGIVSR---GGAILAAWML----------------HHHKENPLY 202 (423)
T ss_pred HHHHHhCCCEEEEccch-----hHHHHHHHHhCCCccCeecC---cHHHHHHHHH----------------HcCCcCchH
Confidence 54 556666665554 356777777633 444443 1222221000 001112456
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhh
Q 024724 166 NIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNI 213 (263)
Q Consensus 166 ~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl 213 (263)
+..+.|-+|+++|.+|++ |..+-=...|.-++...|+.|.+
T Consensus 203 e~fD~lLeI~~~yDVtlS-------LGDglRPG~i~DA~D~aQi~El~ 243 (423)
T TIGR00190 203 KNFDYILEIAKEYDVTLS-------LGDGLRPGCIADATDRAQISELI 243 (423)
T ss_pred HHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 677899999999997642 22222234566667777777665
No 194
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=30.24 E-value=4.6e+02 Score=24.55 Aligned_cols=108 Identities=11% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeE--ec---cCCcCCCchhHHHHh-HHHHHHHHHc-CCcC--EEEcCCCCHHHHHHHhc--
Q 024724 23 VSEEDGISMIKHAFSKGITFF--DT---ADVYGQNANETLLGK-IGEMKKLVEE-GKIK--YIGLSEASPDTIRRAHG-- 91 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~--DT---A~~Yg~G~sE~~lG~-~~~l~~l~~~-Gkir--~iGvs~~~~~~l~~~~~-- 91 (263)
+++++..++......-|+.++ |- ...|.+ -|+.+-. .+++++..++ |+-+ ++-++.-+.+++.+-.+
T Consensus 158 lsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p--~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a 235 (450)
T cd08212 158 LSAKNYGRVVYECLRGGLDFTKDDENINSQPFMR--WRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFA 235 (450)
T ss_pred CCHHHHHHHHHHHHccCCcccccCccCCCCCCCC--HHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHH
Confidence 477888899999999999988 21 222332 3444444 6788887655 6543 33455444565544222
Q ss_pred -CCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 92 -VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 92 -~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
......+++.++. --.....+.+.|++.++.+++.-.+.+.
T Consensus 236 ~~~G~~~~mv~~~~-G~~~l~~l~~~a~~~~l~IhaHrA~~ga 277 (450)
T cd08212 236 KELGSPIIMHDLLT-GFTAIQSLAKWCRDNGMLLHLHRAGHAT 277 (450)
T ss_pred HHhCCCeEeeeccc-ccchHHHHHHHhhhcCceEEecccccee
Confidence 1334566666555 3333467777788889999988777754
No 195
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=30.08 E-value=1.5e+02 Score=25.63 Aligned_cols=177 Identities=17% Similarity=0.188 Sum_probs=90.7
Q ss_pred CCeEeccCC-cCCCchhHHHHh--HHHHHHHHHcCCcCEEEcCCCC--HHHHHHHhcCCCceEEeccCCCcccchhhhhH
Q 024724 40 ITFFDTADV-YGQNANETLLGK--IGEMKKLVEEGKIKYIGLSEAS--PDTIRRAHGVHPITAVQMEWSLWTRDIEEEII 114 (263)
Q Consensus 40 i~~~DTA~~-Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 114 (263)
|-+.|||.. ||. +|++.|-+ ++.++.|++.+ ++.+=++..+ .-.+..+-+..++-++=+. +. -+...
T Consensus 34 iY~~D~a~~PYG~-ks~e~I~~~~~~i~~~l~~~~-ik~lVIACNTASa~al~~LR~~~~iPVvGvi-----Pa-ik~A~ 105 (269)
T COG0796 34 IYVGDTARFPYGE-KSEEEIRERTLEIVDFLLERG-IKALVIACNTASAVALEDLREKFDIPVVGVI-----PA-IKPAV 105 (269)
T ss_pred EEEecCCCCCCCC-CCHHHHHHHHHHHHHHHHHcC-CCEEEEecchHHHHHHHHHHHhCCCCEEEec-----cc-hHHHH
Confidence 456699976 887 45544444 89999999999 9998876543 3445555554443333222 22 13455
Q ss_pred HHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcC--CCHHHH----HHH
Q 024724 115 PLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYK--CTSAQL----ALA 188 (263)
Q Consensus 115 ~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~~q~----al~ 188 (263)
+..+...|++++-..--.. . .+++....+..+- .-.......|-+++++.- -..++- -+.
T Consensus 106 ~~t~~~~IgViaT~~Tvks----~---------~y~~~i~~~~~~~-~V~~la~p~lV~lvE~g~~~~~~~~~~l~~~l~ 171 (269)
T COG0796 106 ALTRNGRIGVIATPATVKS----N---------AYRDLIARFAPDC-EVESLACPELVPLVEEGIRGGPVALEVLKEYLP 171 (269)
T ss_pred HhccCCeEEEEeccchhcc----H---------HHHHHHHHhCCCC-EEEEecCcchHHHHhcccccCHHHHHHHHHHhc
Confidence 5555566888874222111 0 0000000000000 000001124555555432 122222 233
Q ss_pred HhhcCCCceeeccCCCcHHHHHHhhhcc-C--CCC---CHHHHHHHHHhCCCCccCC
Q 024724 189 WVLGQGDDVVPIPGTTKIKNLDDNIDSL-R--IKL---TKEDLKEISDAVPIEEVAG 239 (263)
Q Consensus 189 w~l~~~~v~~vi~g~~~~~~l~enl~a~-~--~~L---t~e~~~~i~~~~~~~~~~~ 239 (263)
|....+ +.+++.|++.=-.|..-++.. . ..| ..+-.+++.+.+......+
T Consensus 172 ~~~~~~-~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~~~a~~~~~~L~~~~~~~ 227 (269)
T COG0796 172 PLQEAG-PDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGAETARRLARLLSPEGLLA 227 (269)
T ss_pred chhccC-CCEEEEeCcCcHHHHHHHHHHhCCCceEeCCHHHHHHHHHHHhChhhhcc
Confidence 333333 589999999988888777655 2 222 2355667777766554443
No 196
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=29.77 E-value=3.5e+02 Score=22.91 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcC-CcCEEEcCCCCHHHHHHHhcCCCceEEec
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~q~ 100 (263)
.++.++..++++.-.+.|+..+++..-. .+..+ ++.++++.+.+ .++..+++..+.+.++.+.+. .++.+.+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~-----~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i 88 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPA-MGEEE-----REAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHI 88 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHH-----HHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEE
Confidence 3478899999999999999999996211 12222 45566666643 466777776777888777764 3344443
Q ss_pred cCCCcc--------cchh------hhhHHHHHHhCCcee
Q 024724 101 EWSLWT--------RDIE------EEIIPLCRELGIGIV 125 (263)
Q Consensus 101 ~~n~~~--------~~~~------~~~~~~~~~~gi~v~ 125 (263)
.++.-+ ...+ .+.+++|+++|+.+.
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 222111 1111 467889999998654
No 197
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=29.75 E-value=1.7e+02 Score=27.22 Aligned_cols=55 Identities=5% Similarity=0.188 Sum_probs=35.6
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
|.+|.+|.-++.. ..++..+.+++.+.++.+.+.|+..+-.--+|| +|++.+.+-
T Consensus 174 vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~ 233 (449)
T PRK09058 174 ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQ 233 (449)
T ss_pred CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHH
Confidence 4566777666542 244555778888899999888854444444687 466665544
No 198
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.75 E-value=3.6e+02 Score=23.17 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcC----CCchhHHHHhHHHHHHHHHcCC-cCEEEcCCCCHHHHHHHh---cCCC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYG----QNANETLLGKIGEMKKLVEEGK-IKYIGLSEASPDTIRRAH---GVHP 94 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~G~sE~~lG~~~~l~~l~~~Gk-ir~iGvs~~~~~~l~~~~---~~~~ 94 (263)
+|.+...+.++..++.|++-+=.....| ...+|+.-- ++...+..+ |+ --..|++..+.....+.. +...
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~-~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEEL-IRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHH-HHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 5889999999999999998775443333 334444433 444444443 43 345788876665544433 3345
Q ss_pred ceEEeccCCCcccchhhhhHHHH----HHhCCceeecc
Q 024724 95 ITAVQMEWSLWTRDIEEEIIPLC----RELGIGIVPYS 128 (263)
Q Consensus 95 ~~~~q~~~n~~~~~~~~~~~~~~----~~~gi~v~a~~ 128 (263)
.+.+++.--.+....+++++++. ...++.++.|.
T Consensus 97 ~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 97 ADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 55444421111121234555544 34578888874
No 199
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.47 E-value=2.3e+02 Score=24.06 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCC----eEeccCCcCCCchhHHHHhHHHHHHHHHc-CCcCEEEcCCCC
Q 024724 26 EDGISMIKHAFSKGIT----FFDTADVYGQNANETLLGKIGEMKKLVEE-GKIKYIGLSEAS 82 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~----~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~-Gkir~iGvs~~~ 82 (263)
+...+.++.+.+.||. +||..-.++. ..+..+.-++.++.+++- |.=--+|+||.+
T Consensus 150 ~~~~~~i~~~~~~Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~~~~~g~Pil~G~Snks 210 (258)
T cd00423 150 EFLEERVEAATEAGIPPEDIILDPGIGFGK-TEEHNLELLRRLDAFRELPGLPLLLGVSRKS 210 (258)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHHHhcCCCcEEEEeccch
Confidence 4567888889999986 7897655543 344555667888888877 877789999965
No 200
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.28 E-value=62 Score=26.41 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=45.0
Q ss_pred hhHHHHHHhCCceee-cccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 024724 112 EIIPLCRELGIGIVP-YSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWV 190 (263)
Q Consensus 112 ~~~~~~~~~gi~v~a-~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~ 190 (263)
+.-+..+++||.++. +..-++|...+........++.. ....+...+.+..+-+.++++++++.++|+.-.
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~~--------~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~a 194 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEARV--------LAKVEAIYDTLLEIFAQAKQDGITTLEAADRMA 194 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHHHH--------HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 556667899999998 66667777654311100000000 012234456667777889999999999998766
Q ss_pred hc
Q 024724 191 LG 192 (263)
Q Consensus 191 l~ 192 (263)
+.
T Consensus 195 ~~ 196 (200)
T cd01075 195 EE 196 (200)
T ss_pred HH
Confidence 53
No 201
>TIGR00641 acid_CoA_mut_N methylmalonyl-CoA mutase N-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 abd AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the N-terminal domain subfamily. In a neighbor-joining tree, AF2215 branches with a bacterial isobutyryl-CoA mutase, which is also the same length. Scoring between the noise and trusted cutoffs are the non-catalytic, partially homologous beta chains from certain heterodimeric examples of 5.4.99.2.
Probab=29.10 E-value=2.3e+02 Score=27.09 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeE----eccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEE
Q 024724 23 VSEEDGISMIKHAFSKGITFF----DTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 98 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~----DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 98 (263)
.+.+++.+.++..++.|.+-+ |.+..+|....... ..|.|...|++-.+.+.++.+++-.+++-+
T Consensus 60 ~~~~eaN~~~~~~L~~G~t~L~~~fd~~t~~G~D~d~~~-----------~~gevG~~Gv~i~s~~D~~~ll~gI~L~~v 128 (528)
T TIGR00641 60 STAEESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPR-----------VAGDVGMAGVAIDSIEDMRILFDGIPLDKV 128 (528)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeecCccccCCCcccch-----------hccccccCCCCcCCHHHHHHHHcCCCccce
Confidence 378899999999999998755 66666665333322 246788888888899999999987766654
Q ss_pred eccCCCcccc--hhhhhHHHHHHhCCc
Q 024724 99 QMEWSLWTRD--IEEEIIPLCRELGIG 123 (263)
Q Consensus 99 q~~~n~~~~~--~~~~~~~~~~~~gi~ 123 (263)
-+.+++-... ...-++..+.++|+.
T Consensus 129 ~v~~~~~~~a~~~la~~~a~a~~~g~~ 155 (528)
T TIGR00641 129 SVSMTMNGAVLPILALYVVVAEEQGVP 155 (528)
T ss_pred eEEEEeCCcHHHHHHHHHHHHHHcCCC
Confidence 4444432221 113455567776554
No 202
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.10 E-value=4.4e+02 Score=24.43 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=34.8
Q ss_pred CCHHHHHHHhcC-CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCccc
Q 024724 81 ASPDTIRRAHGV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 81 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
.+++.+++++.. .+..++...-|+...- .-..+.+.|+++|+.++.-++++..++
T Consensus 135 ~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~ 191 (432)
T PRK06702 135 LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL 191 (432)
T ss_pred CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh
Confidence 467788877653 3444444444444221 127899999999999998776554433
No 203
>PRK14047 putative methyltransferase; Provisional
Probab=29.10 E-value=2.2e+02 Score=25.03 Aligned_cols=92 Identities=9% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHc----CCCe-EeccCCcCCCchhHHHHh-----------------------HHHHHHHHHcCCcC
Q 024724 23 VSEEDGISMIKHAFSK----GITF-FDTADVYGQNANETLLGK-----------------------IGEMKKLVEEGKIK 74 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~----Gi~~-~DTA~~Yg~G~sE~~lG~-----------------------~~~l~~l~~~Gkir 74 (263)
+|++.++++++.-.+. |..+ +|. . |.+++.+-+ ..+++. +.
T Consensus 49 FDk~~Ae~Lin~q~elsd~TGnp~~~~I---~--g~t~EA~~kYidfv~ei~d~PfliDS~~~~~R~aa~~y------v~ 117 (310)
T PRK14047 49 FDREAAEKLVNLQEEMSDETGNPCVVHI---F--GTTPEAITNYIDFFSEVTDSPFLIDSPEGEVRAAAAEY------VT 117 (310)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEE---e--cCCHHHHHHHHHHHhhccCCCeEecCCCHHHHHHHHhh------hh
Confidence 5888999999988764 4443 232 2 245555554 334443 44
Q ss_pred EEEcCC----------CCHHHHHHHhcCCCceEEeccCCCcccchh--------------hhhHHHHHHhCCcee
Q 024724 75 YIGLSE----------ASPDTIRRAHGVHPITAVQMEWSLWTRDIE--------------EEIIPLCRELGIGIV 125 (263)
Q Consensus 75 ~iGvs~----------~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--------------~~~~~~~~~~gi~v~ 125 (263)
.+|+++ .+.++++.+.+...-+++-+-||+.++.++ +++++.+.+.||.-.
T Consensus 118 E~GladR~IYNSIn~s~~~~EieaL~~sdi~aaIiLaFn~~d~sv~gr~~~le~gg~~~~~gll~~ae~~GI~~~ 192 (310)
T PRK14047 118 EIGLADRAIYNSINMSIHESEIEALKQSDIDSSIVLGFNAMDSSLKGRMEMLETGGGLLEKGLLEIADDCGITNI 192 (310)
T ss_pred hhchhHHHHHhhcCccCCHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCce
Confidence 455542 244566555554444567779999998653 348999999998544
No 204
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=28.78 E-value=4.3e+02 Score=23.69 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCHHHHHHHhc-CCCceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCccc
Q 024724 81 ASPDTIRRAHG-VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 81 ~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
.+.+.+++++. ..+..++..+-|+.-.-.+ ..+.+.|+++|+.++.-.+++.+.+
T Consensus 124 ~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 124 NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 36777877764 3555556667776543322 7899999999999998888776643
No 205
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=28.60 E-value=1.4e+02 Score=25.76 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=68.4
Q ss_pred ccCCCcccchhhhhHHHHHHhCCceee-cccCcCcccCCC-CcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHH-
Q 024724 100 MEWSLWTRDIEEEIIPLCRELGIGIVP-YSPLGRGFFGGK-AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAK- 176 (263)
Q Consensus 100 ~~~n~~~~~~~~~~~~~~~~~gi~v~a-~~~l~~G~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~- 176 (263)
+-|++.++.....+.+.|+.+||.++. ++|+-+- |... ....... |...+.--+.++.+++++.---+
T Consensus 62 V~~Tlv~~elr~~l~~~~~~~~i~~vdll~p~i~~-le~~lg~~p~~~--------pG~~~~ld~~Yf~RIeAiefal~h 132 (269)
T PRK05339 62 VFYTLVDPELREILEERCAEFGIPCIDILGPLIAP-LEQELGLKPTPE--------PGRTHGLDEEYFKRIEAIEFALAH 132 (269)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEeccHHHHHH-HHHHHCcCCCCC--------CCcccCCcHHHHHHHHHHHHHHHc
Confidence 347777776556666889999887774 3444321 1111 1111111 11112222566777777764433
Q ss_pred --------------------HcCCCHHHHHHHHhhcCCC-ceeeccCCCcHHHHHHhhh--ccCCCCCHHHHHHHHHh
Q 024724 177 --------------------KYKCTSAQLALAWVLGQGD-DVVPIPGTTKIKNLDDNID--SLRIKLTKEDLKEISDA 231 (263)
Q Consensus 177 --------------------~~g~s~~q~al~w~l~~~~-v~~vi~g~~~~~~l~enl~--a~~~~Lt~e~~~~i~~~ 231 (263)
+-|.||..+-|+. ..-.. ..=.+++..=|+.|.+.-. .+++.++++.+.+|++.
T Consensus 133 DDG~~~~~l~~ADIiLvGVSRtsKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~ 209 (269)
T PRK05339 133 DDGQDPRGLDEADVILVGVSRTSKTPTSLYLAN-KGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKE 209 (269)
T ss_pred CCCCCcCCcccCCEEEECcCCCCCcHHHHHHHc-cCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHH
Confidence 2456777777665 22221 1224567777777777654 45667888888888765
No 206
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=28.56 E-value=4.4e+02 Score=23.76 Aligned_cols=55 Identities=5% Similarity=0.083 Sum_probs=36.3
Q ss_pred CCHHHHHHHhcC-CCceEEeccCCCcccch-hhhhHHHHHHhCCceeecccCcCccc
Q 024724 81 ASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 81 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
.+.+.++++++. ....++..+-|+.-.-. -.++.+.|+++|+.++.-.+.+.+.+
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~ 178 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY 178 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 467777776643 33445555666543322 36899999999999998777765543
No 207
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=28.48 E-value=4e+02 Score=23.26 Aligned_cols=73 Identities=14% Similarity=0.031 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCc-CEEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccCcCcc
Q 024724 62 GEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 62 ~~l~~l~~~Gki-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
+.+.++.++-.+ -+.|=|-++...+.++++..-.+++|+.....-- ..-.++...|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 455566555322 2445556788888888887777888887664321 123789999999999999877666553
No 208
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=28.42 E-value=2.5e+02 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCC-CchhHHH
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQ-NANETLL 58 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-G~sE~~l 58 (263)
+++++..++.+.+.+.|..|+=|+.-|+. |.+.+.+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v 169 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDV 169 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH
Confidence 37788999999999999999999998864 4444433
No 209
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.39 E-value=2.8e+02 Score=25.73 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=41.6
Q ss_pred HHHcCCcCEEEcCCCCHHHHHHHhcC--------CCceEEeccCCCcccchhhhhHHHHHHhCCceeeccc
Q 024724 67 LVEEGKIKYIGLSEASPDTIRRAHGV--------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 67 l~~~Gkir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
+-+.|-+..+|..+.+++++++.++. .++-+|.+ .++-++..+.+.++.+.++||.++..+.
T Consensus 34 vs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 34 MGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 66788888999888888877654332 35666654 2332333346789999999998776543
No 210
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=28.35 E-value=2.9e+02 Score=24.46 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCC-cCCCchhH-HHHh---HHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADV-YGQNANET-LLGK---IGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITA 97 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~-Yg~G~sE~-~lG~---~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~ 97 (263)
+.+++.++++..-+.|+.+|+.+.- |.. .+. .++. +..++++++.=.+-=++..+. +++..+++++....|.
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~--~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~ 316 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSP--AQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADL 316 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCc--ccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence 5778888888888889999996521 110 110 1111 355666777666777777775 7777888888777777
Q ss_pred Eec
Q 024724 98 VQM 100 (263)
Q Consensus 98 ~q~ 100 (263)
+++
T Consensus 317 V~~ 319 (336)
T cd02932 317 VAL 319 (336)
T ss_pred ehh
Confidence 766
No 211
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=28.25 E-value=1.4e+02 Score=23.05 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=37.1
Q ss_pred CcCEEEcCCCCHHHHHHHhcCCCceEEeccCC-CcccchhhhhHHHHHHhCCcee-ecccCc
Q 024724 72 KIKYIGLSEASPDTIRRAHGVHPITAVQMEWS-LWTRDIEEEIIPLCRELGIGIV-PYSPLG 131 (263)
Q Consensus 72 kir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gi~v~-a~~~l~ 131 (263)
+..-+.|...+...++.++....+|++.+.+. =.........+..+.++|+.+- .|+|+-
T Consensus 24 ~~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred CceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 55667777788889999999999999988774 1122235688999999999764 566654
No 212
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=28.15 E-value=1.5e+02 Score=24.08 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcC-CCCHHHHHHHhcCCCceEEeccCCC
Q 024724 32 IKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWSL 104 (263)
Q Consensus 32 l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 104 (263)
+..+.++|.+++=.-.... |.+.+- .+.+.++.+.-.-+.+||. |.+.+.+.++++...++++|++-+-
T Consensus 12 a~~~~~~g~d~~Gfi~~~~---S~R~v~-~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 12 ARLAAELGADYLGFIFYPK---SPRYVS-PDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHHTSSEEEEE--TT---CTTB---HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHHcCCCEEeeecCCC---CCCccC-HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 3445556665554432222 444444 4556666666665589975 5578889899999999999987554
No 213
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=27.94 E-value=64 Score=23.66 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 024724 167 IYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVP 233 (263)
Q Consensus 167 ~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~ 233 (263)
.+..+.+...+++++..+++. -+- ..++++++++..+...+.+++++++..|-.++.
T Consensus 58 ~~~~l~~~L~~~~L~~~E~~q-i~N---------l~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~ 114 (117)
T PF03874_consen 58 SIKELREELKKFGLTEFEILQ-IIN---------LRPTTAVELRAIIESLESRFSEEDLEEILDLVS 114 (117)
T ss_dssp HHHHHHHHHTTSTS-HHHHHH-HHH---------H--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHH-Hhc---------CCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 345666666688888887652 222 233688999999988888999999998877654
No 214
>PLN02363 phosphoribosylanthranilate isomerase
Probab=27.73 E-value=1.6e+02 Score=25.27 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=27.1
Q ss_pred CcCEEEcC-CCCHHHHHHHhcCCCceEEeccCC
Q 024724 72 KIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 103 (263)
Q Consensus 72 kir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 103 (263)
.++.+||. |.+++.+.++++..+++++|++-+
T Consensus 99 ~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~ 131 (256)
T PLN02363 99 GAKPVGVFVDDDANTILRAADSSDLELVQLHGN 131 (256)
T ss_pred CccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 46789985 779999999999999999999754
No 215
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.65 E-value=46 Score=30.09 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=27.4
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.++++||.++-.-||++.+.......+.+|
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~IP 335 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLYDAVQVDQVIP 335 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCcCC
Confidence 57999999999999999999998875443333344
No 216
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=27.30 E-value=2.3e+02 Score=25.25 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchh---HH----------HHh-----------------------------H
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANE---TL----------LGK-----------------------------I 61 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE---~~----------lG~-----------------------------~ 61 (263)
..+...+++..+.++|...||.+..|..-... +. +.+ .
T Consensus 77 P~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~~~iIanPgC~~t~~~ 156 (343)
T PRK00436 77 PHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGARLIANPGCYPTASL 156 (343)
T ss_pred CcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcCCCEEECCCCHHHHHH
Confidence 44678889999999999999999887642211 11 111 5
Q ss_pred HHHHHHHHcCCcC--EE------EcCCCCHHHHHHHhcC-CCceEEeccCCCcccchhhhhHHHHHHh--CCceee-ccc
Q 024724 62 GEMKKLVEEGKIK--YI------GLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIEEEIIPLCREL--GIGIVP-YSP 129 (263)
Q Consensus 62 ~~l~~l~~~Gkir--~i------Gvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~--gi~v~a-~~~ 129 (263)
-+|.-|.+.|+++ .+ |+|........+.... ..- +-..||++.+....++...+++. .|.+.+ ..|
T Consensus 157 l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~--~~~~y~~~~h~h~~Ei~~~l~~~~~~v~~t~~~vP 234 (343)
T PRK00436 157 LALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNE--NLRPYKVGGHRHTPEIEQELSALAGEVSFTPHLVP 234 (343)
T ss_pred HHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcC--CeeecccCCCCCHHHHHHHHHHhcCCEEEEeEEec
Confidence 5677777788776 23 5555433222222100 001 12278887665556677666654 354443 367
Q ss_pred CcCcccCCC
Q 024724 130 LGRGFFGGK 138 (263)
Q Consensus 130 l~~G~L~~~ 138 (263)
+-.|.+..-
T Consensus 235 v~~G~~~tv 243 (343)
T PRK00436 235 MTRGILATI 243 (343)
T ss_pred ccCcEEEEE
Confidence 777766543
No 217
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.25 E-value=49 Score=29.66 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=27.5
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.++++||.++-.-||++.+.......+.+|
T Consensus 291 ~~Ir~iA~e~~VPiven~pLAR~Ly~~~evg~~IP 325 (342)
T TIGR01404 291 LAVRAYAEEAGIPVVRDIPLARQLYRTARVGQYIP 325 (342)
T ss_pred HHHHHHHHHcCCCEeeCHHHHHHHHHcCCCCCcCC
Confidence 57999999999999999999998875443333444
No 218
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=27.18 E-value=5.4e+02 Score=24.28 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcC
Q 024724 25 EEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLS 79 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs 79 (263)
.+-.+..++.|.+.||..|=..+.-. .-+.+- .+++..++.|+.....+|
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~ln---d~~n~~--~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALN---DPRNIQ--QALRAVKKTGKEAQLCIA 153 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCC---CHHHHH--HHHHHHHHcCCEEEEEEE
Confidence 45577889999999999987776554 334444 677888999998654444
No 219
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.89 E-value=5e+02 Score=23.85 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=35.0
Q ss_pred CCHHHHHHHhcC-CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCc
Q 024724 81 ASPDTIRRAHGV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 81 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
.+.+.++++++. ..+.++....|+.-.- .-.++.+.|+++|+.++.-...+.+
T Consensus 136 ~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~ 190 (427)
T PRK05994 136 DDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASP 190 (427)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 366777777643 4445555566654322 2368999999999999977776644
No 220
>PRK11675 LexA regulated protein; Provisional
Probab=26.85 E-value=87 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHH
Q 024724 164 NKNIYFRIENLAKKYKCTSAQLAL 187 (263)
Q Consensus 164 ~~~~~~~l~~ia~~~g~s~~q~al 187 (263)
..+..++|.++|+++++|.+++.-
T Consensus 58 dedl~ekL~eyAe~~nitRSElIr 81 (90)
T PRK11675 58 NADLVDALNELAEARNISRSELIE 81 (90)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356778999999999999999653
No 221
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=26.72 E-value=2.5e+02 Score=25.90 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=40.3
Q ss_pred EcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccC
Q 024724 77 GLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 130 (263)
Q Consensus 77 Gvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l 130 (263)
+=|-++.+.+.++++..-.+++|+..+-+-- ..-.++..+|+.+||.++..+..
T Consensus 303 DEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 303 DEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred cCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 4455678888888888888889987764321 11378999999999999886554
No 222
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.54 E-value=3.7e+02 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCC-eEeccCCcC
Q 024724 24 SEEDGISMIKHAFSKGIT-FFDTADVYG 50 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~-~~DTA~~Yg 50 (263)
..+-+.++++.+-+.|+. .+||+..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 344468899999899986 789998665
No 223
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.45 E-value=3.4e+02 Score=24.24 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=49.6
Q ss_pred HHHHHHHHHc--CCcC-EEEcCCCCHHHHHHHhcCCCceEEeccCCCcc-cchhhhhHHHHHHhCCceeec
Q 024724 61 IGEMKKLVEE--GKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 61 ~~~l~~l~~~--Gkir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~a~ 127 (263)
++.+.+|+++ -.|- +.|=|-++...+.++++..-++++|+...-.- -..-.++...|+.+|+.++..
T Consensus 222 ~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 222 LAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred HHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccC
Confidence 6788888876 2222 44556778999999999888899998776532 112368999999999998765
No 224
>PRK12928 lipoyl synthase; Provisional
Probab=26.40 E-value=3.8e+02 Score=23.31 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=39.5
Q ss_pred HHHHHHHHHcC---CcCE---EEcCCCCHHHHHHHh---cCCCceEEec-cCCC-------ccc----chhhhhHHHHHH
Q 024724 61 IGEMKKLVEEG---KIKY---IGLSEASPDTIRRAH---GVHPITAVQM-EWSL-------WTR----DIEEEIIPLCRE 119 (263)
Q Consensus 61 ~~~l~~l~~~G---kir~---iGvs~~~~~~l~~~~---~~~~~~~~q~-~~n~-------~~~----~~~~~~~~~~~~ 119 (263)
++.++.+++.| .++. +|+ +-+.+.+.+.+ ...+++.+.+ +|.. +.+ ..-..+-+.+.+
T Consensus 191 le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 191 LDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARE 269 (290)
T ss_pred HHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHH
Confidence 45566666666 3332 355 44555544433 2345554443 4432 111 111567777888
Q ss_pred hCCceeecccCcC
Q 024724 120 LGIGIVPYSPLGR 132 (263)
Q Consensus 120 ~gi~v~a~~~l~~ 132 (263)
.|...++.+||-+
T Consensus 270 ~g~~~~~~~p~~r 282 (290)
T PRK12928 270 LGFSHVRSGPLVR 282 (290)
T ss_pred cCCceeEecCccc
Confidence 8998899888875
No 225
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=26.36 E-value=50 Score=29.72 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=27.1
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.|+++||.++-.-||++.+.......+.+|
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY~~~~vg~~IP 326 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALFKEVECGDYIP 326 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCcCC
Confidence 57999999999999999999998765443333343
No 226
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=26.14 E-value=70 Score=27.08 Aligned_cols=51 Identities=10% Similarity=0.245 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHh---hcCCCceeeccCCCcHHHHHHhhhc
Q 024724 164 NKNIYFRIENLAKKYKCTSAQLALAWV---LGQGDDVVPIPGTTKIKNLDDNIDS 215 (263)
Q Consensus 164 ~~~~~~~l~~ia~~~g~s~~q~al~w~---l~~~~v~~vi~g~~~~~~l~enl~a 215 (263)
..+.+.++..||.-|++++.+++..|- +++.. ...-+...+.+++++.+..
T Consensus 8 ~~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~-~~~~l~~~~L~~F~~~lq~ 61 (253)
T PF08418_consen 8 DPDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQL-DDTKLTLDNLDQFKQYLQD 61 (253)
T ss_dssp -HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT--SC----TTTTTGGGTTTSG
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC-CcCcCCHHHHHHHHHHHHH
Confidence 356778999999999999999999884 34432 2223566666666666554
No 227
>cd03680 MM_CoA_mutase_ICM_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM. ICM from S. cinnamonensis is comprised of a large and a small subunit. The holoenzyme appears to be an alpha2beta2 heterotetramer with up to 2 molecules of coenzyme B12 bound. The small subunit binds coenzyme B12. ICM catalyzes the reversible rearrangement of n-butyryl-CoA to isobutyryl-CoA, intermediates in fatty acid and valine catabolism, which in S. cinnamonensis can be converted to methylmalonyl-CoA and used in polyketide synthesis.
Probab=25.98 E-value=2.9e+02 Score=26.53 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCCeE----eccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEe
Q 024724 24 SEEDGISMIKHAFSKGITFF----DTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQ 99 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~----DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q 99 (263)
+.+++.+.++..++.|.+-+ |.+..+|........ .|.|...|++-.+.+.++.+++-.+++-+-
T Consensus 81 ~~~e~N~~~~~~L~~G~tgLs~afd~~t~~G~D~d~p~~-----------~gevG~~Gv~i~s~~Dm~~ll~gI~L~~v~ 149 (538)
T cd03680 81 TAEETNKRFKYLLEQGQTGLSVAFDLPTLMGYDSDHPMA-----------EGEVGKVGVAIDTLADMEILFDGIPLDKVS 149 (538)
T ss_pred CHHHHHHHHHHHHHCCCceEEEeecCccccCCCcccchh-----------cccccccCCCcCCHHHHHHHHcCCCcccee
Confidence 78899999999999997754 767677754333322 368888889888999999999876665443
Q ss_pred ccCCCcccc--hhhhhHHHHHHhCCc
Q 024724 100 MEWSLWTRD--IEEEIIPLCRELGIG 123 (263)
Q Consensus 100 ~~~n~~~~~--~~~~~~~~~~~~gi~ 123 (263)
+.+++-.+. ...-++..+.++|+.
T Consensus 150 v~mt~~~~a~~lla~~~a~a~~~g~~ 175 (538)
T cd03680 150 TSMTINPPAAILLAMYIAVAEKQGVP 175 (538)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHcCCC
Confidence 433332221 124566777776654
No 228
>cd03679 MM_CoA_mutase_alpha_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In higher animals, MCM is involved in the breakdown of odd-chain fatty acids, several amino acids, and cholesterol. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with
Probab=25.95 E-value=2.9e+02 Score=26.50 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCCe----EeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEE
Q 024724 23 VSEEDGISMIKHAFSKGITF----FDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 98 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~----~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 98 (263)
.+.+++.+.++..++.|.+- ||.+..+|....... . .|.|...|++-.+.+.++.+++-.+++-+
T Consensus 77 ~~~~e~N~~~~~~L~~G~t~Ls~~fd~~t~~G~D~d~~~-~----------~gevG~~Gv~i~s~~D~~~ll~gI~L~~v 145 (536)
T cd03679 77 STAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPR-V----------VGDVGKAGVAIDSVEDMKILFDGIPLDKM 145 (536)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEeccccccCCCcccch-h----------ccccCCcCCCcCCHHHHHHHHcCCCccce
Confidence 37889999999999999774 476767775333322 2 36777888888899999999987776654
Q ss_pred eccCCCcccc--hhhhhHHHHHHhCCc
Q 024724 99 QMEWSLWTRD--IEEEIIPLCRELGIG 123 (263)
Q Consensus 99 q~~~n~~~~~--~~~~~~~~~~~~gi~ 123 (263)
-+.+++-... ...-++..+.++|+.
T Consensus 146 ~v~~t~~~~a~~~la~~~a~~~~~g~~ 172 (536)
T cd03679 146 SVSMTMNGAVLPILAFYIVAAEEQGVP 172 (536)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhCCC
Confidence 4444432222 113456777776654
No 229
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=25.62 E-value=1.2e+02 Score=27.88 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=33.9
Q ss_pred CcccccceeccccCCC-CCCCCCCHHH----HHHHHHHHHHcCCC--eEeccCC
Q 024724 2 VLQVSKLGLGCMNLSS-GYSSPVSEED----GISMIKHAFSKGIT--FFDTADV 48 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~-~~~~~~~~~~----~~~~l~~A~~~Gi~--~~DTA~~ 48 (263)
|+...+|.||.=.+|. .|... +.++ +.+++...+++|++ |+||+-.
T Consensus 76 gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 76 GFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 4555688999988875 46665 3333 77899999999999 6798844
No 230
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.55 E-value=4.8e+02 Score=23.20 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCC-cCCCchhHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEec
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADV-YGQNANETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~-Yg~G~sE~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~ 100 (263)
+.++..++++..-+.|+.+++.+.- |.. .. -+. ++...++++.=++-=+++.+++++..+++++....|.+.+
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~-~~---~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAG-NP---EDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCC-cc---cccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 5677888888888889999987532 321 11 111 4445555555456666666777777777777766666554
No 231
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=25.52 E-value=5.8e+02 Score=24.08 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeE--ecc---CCcCCCchhHHHHh-HHHHHHHHHc-CCcC--EEEcCCCCHHHHHHHhc--
Q 024724 23 VSEEDGISMIKHAFSKGITFF--DTA---DVYGQNANETLLGK-IGEMKKLVEE-GKIK--YIGLSEASPDTIRRAHG-- 91 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~--DTA---~~Yg~G~sE~~lG~-~~~l~~l~~~-Gkir--~iGvs~~~~~~l~~~~~-- 91 (263)
+++++..+++..++.-|+.++ |-- ..|. .=|+.+-. ++++.+..++ |+.+ ++-++..+.+++.+-.+
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~--p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~ 250 (468)
T PRK04208 173 LSAKNYGRVVYEALRGGLDFTKDDENLNSQPFN--RWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFA 250 (468)
T ss_pred CCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCc--cHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHH
Confidence 478899999999999999998 221 1233 13444443 6777777654 6543 44556554566533221
Q ss_pred -CCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 92 -VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 92 -~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
......+++.+++.--.....+.+.|+..++.+.+.-.+.+.
T Consensus 251 ~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga 293 (468)
T PRK04208 251 KELGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRAMHAA 293 (468)
T ss_pred HHhCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCCcccc
Confidence 234467777777765544567777778889999888777654
No 232
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.29 E-value=1.6e+02 Score=23.16 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=34.8
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 181 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 181 (263)
...++.|++.|+..+...+-..+... ........+...+.++.+.++|+++|++
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~-----------------~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGP-----------------EDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSST-----------------TSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCceeecCccccccc-----------------CCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 67899999999988876644211000 0011234456777888888999988853
No 233
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=25.16 E-value=29 Score=22.11 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=6.7
Q ss_pred cHHHHHHhhhccCC
Q 024724 205 KIKNLDDNIDSLRI 218 (263)
Q Consensus 205 ~~~~l~enl~a~~~ 218 (263)
+.+++..-+.+++.
T Consensus 39 ~~~~l~~ia~~l~~ 52 (63)
T PF13443_consen 39 SLDTLEKIAKALNC 52 (63)
T ss_dssp -HHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHcCC
Confidence 45555555555544
No 234
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=25.02 E-value=2e+02 Score=19.83 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHc--------CCCeEeccCCcCCCchhHHHHh---------HHHHHHHHHcCCcCEEEcCCCCHHHH
Q 024724 24 SEEDGISMIKHAFSK--------GITFFDTADVYGQNANETLLGK---------IGEMKKLVEEGKIKYIGLSEASPDTI 86 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~--------Gi~~~DTA~~Yg~G~sE~~lG~---------~~~l~~l~~~Gkir~iGvs~~~~~~l 86 (263)
+.++.+.+|..++.. |..|+=++ -|+.+-|. ...|.+...++-|.++-+..++++.-
T Consensus 2 ~~e~Ik~ll~~~L~~e~v~V~Gdg~Hf~vi~------Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsikt~Tp~eW 75 (80)
T COG5007 2 DNEEIKSLLENALPLEEVEVEGDGSHFQVIA------VSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAEW 75 (80)
T ss_pred CHHHHHHHHHhcCCccEEEEecCCceEEEEE------ehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEeeecCHHHh
Confidence 567888888888753 33333332 23444443 67888999999999999999998765
Q ss_pred H
Q 024724 87 R 87 (263)
Q Consensus 87 ~ 87 (263)
.
T Consensus 76 ~ 76 (80)
T COG5007 76 A 76 (80)
T ss_pred h
Confidence 3
No 235
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=24.59 E-value=5.3e+02 Score=23.31 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=36.6
Q ss_pred CHHHHHHHhcC--CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCccc
Q 024724 82 SPDTIRRAHGV--HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 82 ~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
+.+.++++++. .++.++....|+.-.- .-.++.+.|+++|+.++.-...+.|..
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~ 181 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLL 181 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 46777777654 3444555566754322 126899999999999998888776643
No 236
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=24.56 E-value=84 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=27.9
Q ss_pred CcccccceeccccCCC-CCCCCCCHHH----HHHHHHHHHHcCCC--eEeccCC
Q 024724 2 VLQVSKLGLGCMNLSS-GYSSPVSEED----GISMIKHAFSKGIT--FFDTADV 48 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~-~~~~~~~~~~----~~~~l~~A~~~Gi~--~~DTA~~ 48 (263)
|+...+|.||.=.+|. .|... +.++ +.+++...+++|++ |+||+-.
T Consensus 79 g~~~~~iiLGGDHLGP~~w~~l-paeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ 131 (424)
T PF08013_consen 79 GFPRDRIILGGDHLGPNPWQHL-PAEEAMAKAKELIRAYVEAGFTKIHLDCSMD 131 (424)
T ss_dssp T--GGGEEEEEEEESSCCCTTS-BHHHHHHHHHHHHHHHHCTT--EEEE---C-
T ss_pred CCchhhEEecCCCCCcccccCC-CHHHHHHHHHHHHHHHHHcCCceEeecCCCC
Confidence 5566679999988885 35543 4443 67889999999999 7798743
No 237
>PRK05968 hypothetical protein; Provisional
Probab=24.47 E-value=5.3e+02 Score=23.29 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=36.9
Q ss_pred CHHHHHHHhcCCCceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCcc
Q 024724 82 SPDTIRRAHGVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 82 ~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
+.+.+++++...++.+++.+.|+.....+ .++.+.|+++|+.++.-...+.+.
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 56777777654566666666676544322 678999999999999777766554
No 238
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.30 E-value=3e+02 Score=24.43 Aligned_cols=71 Identities=18% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCc-CEEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeecccCc
Q 024724 61 IGEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLG 131 (263)
Q Consensus 61 ~~~l~~l~~~Gki-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~ 131 (263)
+..+.+++++-.+ -+.|=|-++...+..+++..-++++|+..+.+-- ..-.++...|+.+|+.++..+...
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~e 289 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 6677777765332 2556667888889999888888899987665331 123678999999999987654443
No 239
>PHA01976 helix-turn-helix protein
Probab=24.12 E-value=62 Score=20.81 Aligned_cols=26 Identities=4% Similarity=0.018 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCC
Q 024724 169 FRIENLAKKYKCTSAQLALAWVLGQG 194 (263)
Q Consensus 169 ~~l~~ia~~~g~s~~q~al~w~l~~~ 194 (263)
.+|+.+.++.|+|..++|-..-+++.
T Consensus 5 ~rl~~~R~~~glt~~~lA~~~gvs~~ 30 (67)
T PHA01976 5 IQLIKARNARAWSAPELSRRAGVRHS 30 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHH
Confidence 46666777777777777765544433
No 240
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=24.12 E-value=1.3e+02 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=34.1
Q ss_pred CcccccceeccccCCC-CCCCCCCHHH----HHHHHHHHHHcCCC--eEeccCC
Q 024724 2 VLQVSKLGLGCMNLSS-GYSSPVSEED----GISMIKHAFSKGIT--FFDTADV 48 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~-~~~~~~~~~~----~~~~l~~A~~~Gi~--~~DTA~~ 48 (263)
|+...+|.||.=.+|. .|... +.++ +.++++..+++|++ |+||+-.
T Consensus 79 gf~~~~iiLGGDHLGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 131 (426)
T PRK15458 79 NFPQEALILGGDHLGPNRWQNL-PAAQAMANADDLIKSYVAAGFKKIHLDCSMS 131 (426)
T ss_pred CCChhhEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 4555689999988885 46654 4433 77899999999999 6798854
No 241
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=24.11 E-value=2.3e+02 Score=26.02 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
-..+..|.+.|.--..|+.+-.......+....-..+.+-+|+++......+..+..++.++.+.+-.|++.+
T Consensus 280 ~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 280 ARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 4678889999999999998875544444443333456777999998866678888889999999988888753
No 242
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=24.09 E-value=1.5e+02 Score=27.55 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCC-cCCC-chhHHHHhHHHHHHHHHcCCcCEE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADV-YGQN-ANETLLGKIGEMKKLVEEGKIKYI 76 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~-Yg~G-~sE~~lG~~~~l~~l~~~Gkir~i 76 (263)
+.+++.++|+.|++..--.++--.. ---| .-|.++..++.+.+++++|+||.+
T Consensus 220 ~~~d~~~iI~~Ai~~~~~~~~~~~~~~~~GF~~e~i~~~~~~l~~aik~G~Ir~~ 274 (423)
T cd01914 220 EGKDFSEVIEKAKELPGFPEEEESGTITTGFAHNQVLAVADKVVEAVKSGKIRHF 274 (423)
T ss_pred CccCHHHHHHHHHhCCCCCCCcCCceEEecchHHHHHHHHHHHHHHHHcCCcceE
Confidence 4577899999999766311221000 0002 246677778999999999999987
No 243
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.87 E-value=2.1e+02 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.8
Q ss_pred hhhHHHHHHhCCceeeccc
Q 024724 111 EEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~ 129 (263)
..+++.|+++|+.+.+|.+
T Consensus 195 ~~~v~~~~~~Gl~v~vwTV 213 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTI 213 (237)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5788888888888888754
No 244
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.78 E-value=1e+02 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=18.4
Q ss_pred eeeccCCCcHHHHHHhhhccCC-CCCHHHHHHHHH
Q 024724 197 VVPIPGTTKIKNLDDNIDSLRI-KLTKEDLKEISD 230 (263)
Q Consensus 197 ~~vi~g~~~~~~l~enl~a~~~-~Lt~e~~~~i~~ 230 (263)
..+=.|.++++|+++..++.+- -.-...++.|.+
T Consensus 208 v~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 208 VLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred eEEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHh
Confidence 3444577777777777766543 233333444433
No 245
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.75 E-value=4.1e+02 Score=22.31 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=34.8
Q ss_pred EEcCCC-----CHHHHHHHhcCCCceEEeccCCC-------cccchhhhhHHHHHHhCCceeecccCcCc
Q 024724 76 IGLSEA-----SPDTIRRAHGVHPITAVQMEWSL-------WTRDIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 76 iGvs~~-----~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
+|+|++ +..+..+.+....++.+++..+. +....-.++.+.++++|+.+.++.|...+
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 455543 44455555555677777763221 11111266888899999999888775543
No 246
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=23.73 E-value=1.8e+02 Score=24.92 Aligned_cols=122 Identities=21% Similarity=0.192 Sum_probs=64.9
Q ss_pred ccCCCcccchhhhhHHHHHHhCCceee-cccCcCcccCCC-CcCCCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHH-
Q 024724 100 MEWSLWTRDIEEEIIPLCRELGIGIVP-YSPLGRGFFGGK-AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAK- 176 (263)
Q Consensus 100 ~~~n~~~~~~~~~~~~~~~~~gi~v~a-~~~l~~G~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~- 176 (263)
+-|++.++.....+.+.|+++||..+- ++|+-.- |... ....... |...+.--+.++++++++.---+
T Consensus 56 V~~Tlv~~~lr~~l~~~~~~~~i~~~Dll~~~l~~-l~~~lg~~p~~~--------pg~~~~ld~~Yf~RIeAiefav~~ 126 (255)
T PF03618_consen 56 VFYTLVDPELREYLEEFCREHGIPCVDLLGPLLSA-LEEFLGQKPSRK--------PGLQHQLDEDYFKRIEAIEFAVKH 126 (255)
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCCEEeccHHHHHH-HHHHHCcCcccc--------cCccccchHHHHHHHHHHHHHHHc
Confidence 346777776556666688888887663 3443321 1111 0000000 22222223456777776654333
Q ss_pred --------------------HcCCCHHHHHHHHhhcCC-CceeeccCCCcHHHHHHh--hhccCCCCCHHHHHHHHHh
Q 024724 177 --------------------KYKCTSAQLALAWVLGQG-DDVVPIPGTTKIKNLDDN--IDSLRIKLTKEDLKEISDA 231 (263)
Q Consensus 177 --------------------~~g~s~~q~al~w~l~~~-~v~~vi~g~~~~~~l~en--l~a~~~~Lt~e~~~~i~~~ 231 (263)
+-+.||..+-|+. ..-. ...-.+++..=|++|.+. -+.+++.++++.+.+|++-
T Consensus 127 DDG~~~~~l~~ADivLvGVSRtsKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~ki~GLtidp~~L~~IR~~ 203 (255)
T PF03618_consen 127 DDGKNPRGLDEADIVLVGVSRTSKTPLSMYLAN-KGYKVANVPLVPEVPLPEELFEVDPKKIFGLTIDPERLIEIRRE 203 (255)
T ss_pred cCCCCccccccCCEEEEcccccCCCchhHHHHh-cCcceeecCcCCCCCCCHHHHhCCCCcEEEEECCHHHHHHHHHH
Confidence 2345677776666 2211 123345666777777766 2334567778888877764
No 247
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.66 E-value=4.5e+02 Score=22.24 Aligned_cols=107 Identities=23% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh---------------HHHHHHHHHcCCcCEEEcCCCCHHHHH
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK---------------IGEMKKLVEEGKIKYIGLSEASPDTIR 87 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~---------------~~~l~~l~~~Gkir~iGvs~~~~~~l~ 87 (263)
++.++-.++.+.+-+.||.||=|...-. +=.++-+ +.-|+++-+.||=--+.....+.++++
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~ 129 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIE 129 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHH
Confidence 5778899999999999999999875443 3344433 778888888887544444444455665
Q ss_pred HHhcC------CCceEEeccCCCccc--chhhhhHHHHH-HhCCceeecccCcCc
Q 024724 88 RAHGV------HPITAVQMEWSLWTR--DIEEEIIPLCR-ELGIGIVPYSPLGRG 133 (263)
Q Consensus 88 ~~~~~------~~~~~~q~~~n~~~~--~~~~~~~~~~~-~~gi~v~a~~~l~~G 133 (263)
++++. .++.+.|+.-++=.+ ..+...++..+ +.+ ..+.||=-..|
T Consensus 130 ~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 130 RAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp HHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 55443 455555553332111 12345666666 556 44466544434
No 248
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=23.54 E-value=3.4e+02 Score=23.94 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHH--hHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEecc
Q 024724 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLG--KIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQME 101 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG--~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 101 (263)
.+..++++.+.+.|+..|....-.. ....-| .|+.+.++++.=+|-=||.... +.+...++++....|.+|+-
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~---~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTR---ACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCcc---ccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 3566666677777777774321110 111112 2677777777666777776665 67777777776777777773
No 249
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=23.50 E-value=1.1e+02 Score=23.26 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYG 50 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 50 (263)
+++++.++++.|+++|..-.+-+..||
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~g 107 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEG 107 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 789999999999999988766554444
No 250
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.42 E-value=5.4e+02 Score=23.06 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeccCCcCCCchhHHHHh-HHHHHHHH-HcCCcCEEEcCCCCHHHHHHHhcC------CC
Q 024724 24 SEEDGISMIKHAFSKG-ITFFDTADVYGQNANETLLGK-IGEMKKLV-EEGKIKYIGLSEASPDTIRRAHGV------HP 94 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~G-i~~~DTA~~Yg~G~sE~~lG~-~~~l~~l~-~~Gkir~iGvs~~~~~~l~~~~~~------~~ 94 (263)
+.++..+.-+.|-+.| .++...|.-++.| +-+-+ .++.+..+ +.|.=-.+-+.-.+.++++++.+. ..
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~---~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAGRGPG---RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEeccCCC---ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecc
Confidence 5566666666667889 8888888777622 11222 24444444 334322333335677788777664 23
Q ss_pred ceEEeccCCCccc--chh--hhhHHHHHHhCCceeecccCcCc
Q 024724 95 ITAVQMEWSLWTR--DIE--EEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 95 ~~~~q~~~n~~~~--~~~--~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
++..+-.|.=+.+ ..+ ...++.+++.|+.+.+-.-++.|
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlG 204 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLG 204 (335)
T ss_pred cccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCC
Confidence 3444444442222 222 46788888999998765555544
No 251
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=23.34 E-value=56 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCeEeccCCcC
Q 024724 29 ISMIKHAFSKGITFFDTADVYG 50 (263)
Q Consensus 29 ~~~l~~A~~~Gi~~~DTA~~Yg 50 (263)
...+...++.|+|+||-=-.++
T Consensus 29 ~~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp SHHHHHHHHTT--EEEEEEEEE
T ss_pred hHhHHHHHhccCceEEEEEEcC
Confidence 3578889999999999765555
No 252
>PLN02509 cystathionine beta-lyase
Probab=23.22 E-value=6.3e+02 Score=23.69 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=39.0
Q ss_pred CCHHHHHHHhcC-CCceEEeccCCCcccchh-hhhHHHHHHhCCceeecccCcCccc
Q 024724 81 ASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 81 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
.+.+.+++++.. .++.++..+.|+.-.-.+ ..+.+.|+++|+.++.-.+++.|.+
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 356777776643 445566677787554322 7889999999999998888877754
No 253
>PRK13753 dihydropteroate synthase; Provisional
Probab=23.14 E-value=5e+02 Score=22.57 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcC-CCch----hHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCce
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYG-QNAN----ETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPIT 96 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~s----E~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~ 96 (263)
.+.+.+.+-....++.|...+|-...-. +|.. |+.+.+ ...++.+++.+. -|.|-++.++.++++++.. .+
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-ad 98 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-VG 98 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-CC
Confidence 3667888888888999999999854322 3322 333333 456677776653 4899999999999999863 33
Q ss_pred -EEeccCCCcccchhhhhHHHHHHhCCceeecccCc
Q 024724 97 -AVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 131 (263)
Q Consensus 97 -~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~l~ 131 (263)
+|-+ +-+. ...+.+.+.++++.++.+...+
T Consensus 99 iINDV--sg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 99 YLNDI--QGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred EEEeC--CCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 2322 2221 3567888999999998877654
No 254
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.10 E-value=65 Score=31.23 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=27.5
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.|+++||.++-.-|||+.+.......+.+|
T Consensus 591 lrIReiAeE~gVPIVENpPLARALY~~veVGq~IP 625 (646)
T PRK12773 591 LLIIRIARENGVPTVEDRLQARGLYEEVELGAEVP 625 (646)
T ss_pred HHHHHHHHHcCCcEEECHHHHHHHHHcCCCCCcCC
Confidence 57999999999999999999998875443333444
No 255
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.05 E-value=3e+02 Score=24.97 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=47.9
Q ss_pred HHHHHHHHHc------CCcCEEEcCCCCHHHHHHHhcCCCceEEeccCCCccc-chhhhhHHHHHHhCCceeeccc
Q 024724 61 IGEMKKLVEE------GKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 61 ~~~l~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
++.+.+|.+. +.=-..|=+.++...++++++..-.+++|+..+-.-- ..-.++...|+.+||.++..+.
T Consensus 245 ~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 245 IERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 3556666655 2223445566788888888888888899987775321 1136889999999999998654
No 256
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.04 E-value=4.9e+02 Score=22.35 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCC----C-----chhHHHHh-------HHHHHHHHHcCCcCEEEcCCCCH----
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQ----N-----ANETLLGK-------IGEMKKLVEEGKIKYIGLSEASP---- 83 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~----G-----~sE~~lG~-------~~~l~~l~~~Gkir~iGvs~~~~---- 83 (263)
+.+...++++...+.|++.+.-.--|.. | .+++.+.. ++.+.+++++=.+--+-++-+++
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 7888999999999999999987544432 2 12333322 55555555433333333333332
Q ss_pred --HHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeec
Q 024724 84 --DTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 127 (263)
Q Consensus 84 --~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 127 (263)
+.+.+.+....++-+-++-=+... ..++++.|+++|+..+..
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee--~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEE--SDYLISVCNLYNIELILL 150 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHH--HHHHHHHHHHcCCCEEEE
Confidence 222222333445555444333322 367888999999877654
No 257
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=22.91 E-value=91 Score=18.00 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 024724 169 FRIENLAKKYKCTSAQLA 186 (263)
Q Consensus 169 ~~l~~ia~~~g~s~~q~a 186 (263)
+.+..||++++++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 478899999999998875
No 258
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.88 E-value=5.7e+02 Score=23.08 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=36.2
Q ss_pred CCHHHHHHHhcC-CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCcc
Q 024724 81 ASPDTIRRAHGV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 81 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
.+.+.+++++.. .+..++..+.|+.-.. .-.++.+.|+++|+.++.-.+.+.+.
T Consensus 134 ~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 134 SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPY 189 (388)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 466777776643 3444555677764332 23789999999999999877766554
No 259
>PRK00915 2-isopropylmalate synthase; Validated
Probab=22.82 E-value=4.8e+02 Score=24.78 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCC-cCEEEcCCCCHHHHHHHhcC---CCceE
Q 024724 22 PVSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGV---HPITA 97 (263)
Q Consensus 22 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~---~~~~~ 97 (263)
.++.++..++.+.-.+.|+..|+...-. .|+. +++.++++.+.++ .+..+++......++.+++. ...+.
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~---~s~~---d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~ 95 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA---SSPG---DFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPR 95 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC---CChH---HHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCE
Confidence 4588899999999889999999986322 1332 2445555554443 55556654445666665521 22222
Q ss_pred Eec---------cCCCcccchh-----hhhHHHHHHhCCceeeccc
Q 024724 98 VQM---------EWSLWTRDIE-----EEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 98 ~q~---------~~n~~~~~~~-----~~~~~~~~~~gi~v~a~~~ 129 (263)
+.+ ++++-....+ .+.+++++++|..+. +++
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-f~~ 140 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-FSA 140 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EEe
Confidence 222 2222111111 468889999998764 444
No 260
>PRK09726 antitoxin HipB; Provisional
Probab=22.82 E-value=1.3e+02 Score=20.87 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccCC--CcHHHHHHhhhccCCC
Q 024724 167 IYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGT--TKIKNLDDNIDSLRIK 219 (263)
Q Consensus 167 ~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g~--~~~~~l~enl~a~~~~ 219 (263)
...+|+++.++.|+|..++|-+--++++.+.-..-|. .+.+.+...+++++..
T Consensus 13 l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~ 67 (88)
T PRK09726 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELS 67 (88)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 3457778888889998888877666655433332222 2344555555555443
No 261
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.75 E-value=5.6e+02 Score=22.99 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=37.6
Q ss_pred CCHHHHHHHhcC-CCceEEeccCCCcccch-hhhhHHHHHHhCCceeecccCcCccc
Q 024724 81 ASPDTIRRAHGV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 81 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
.+.+.++++++. .++.++..+.|+.-.-. -.++.+.|+++|+-++.-.+.+.+..
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL 175 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 467778777652 34455566677644322 37889999999999998887765543
No 262
>PTZ00413 lipoate synthase; Provisional
Probab=22.73 E-value=6.1e+02 Score=23.35 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=16.3
Q ss_pred hhhHHHHHHhCCceeecccCcC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGR 132 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~ 132 (263)
..+-+.+.+.|...++.+||-+
T Consensus 352 ~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 352 EMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHHHHHcCCceEEecCccc
Confidence 4566667777888888888875
No 263
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.67 E-value=3.5e+02 Score=23.92 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHc----CCCe-EeccCCcCCCchhHHHHh-----------------------HHHHHHHHHcCCcC
Q 024724 23 VSEEDGISMIKHAFSK----GITF-FDTADVYGQNANETLLGK-----------------------IGEMKKLVEEGKIK 74 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~----Gi~~-~DTA~~Yg~G~sE~~lG~-----------------------~~~l~~l~~~Gkir 74 (263)
+|++.++++++.-.+. |..+ +|. . |.+++.+-+ ..+++. +.
T Consensus 49 FDk~~Ae~Lin~q~elsd~tGnp~~~qI---~--~~t~EA~~kYidfv~~i~d~PfliDS~~~~~r~aa~ky------~~ 117 (314)
T TIGR01114 49 FDKAAAETLIKTQEELSDATGNPYVVQI---F--GETPEAIVRYIDWVADITDAPFLIDSTSGEARAAAAKY------AT 117 (314)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCeEEEE---e--cCCHHHHHHHHHHHhcccCCCeEecCCcHHHHHHHhhh------hh
Confidence 5888999999988764 5443 232 2 245544444 333333 44
Q ss_pred EEEcCC----------CCHHHHHHHhcCCCceEEeccCCCcccchh--------------hhhHHHHHHhCCcee
Q 024724 75 YIGLSE----------ASPDTIRRAHGVHPITAVQMEWSLWTRDIE--------------EEIIPLCRELGIGIV 125 (263)
Q Consensus 75 ~iGvs~----------~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--------------~~~~~~~~~~gi~v~ 125 (263)
.+|+++ .+.++++.+.+...=+++-+-||+.++.++ +++++.+.+.||.-.
T Consensus 118 E~GladR~IYNSIn~s~~~eEieaL~esdi~aaIiLaFnp~dpsv~gr~~~l~~gg~~~~~gll~~ae~~GI~~p 192 (314)
T TIGR01114 118 EVGLADRAIYNSINASIEEEEIQVLKESDLSAAIVLAFNPMDPTVEGKIDILEVGGGTSDKGMLEIAEECGIKYP 192 (314)
T ss_pred hhchHHHHHHhhcCccCCHHHHHHHHhcCCCeEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCce
Confidence 455542 244566555554443567778999988654 348999999998543
No 264
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=22.64 E-value=3.6e+02 Score=27.03 Aligned_cols=96 Identities=11% Similarity=0.182 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccC-CcCCCchhHHHHh---HHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEE
Q 024724 24 SEEDGISMIKHAFSKGITFFDTAD-VYGQNANETLLGK---IGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAV 98 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg~G~sE~~lG~---~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~ 98 (263)
+.++..++++..-+.|+.++|.+. .|..... ...+. .....++++.=++--+++.+. +++..+++++....|.+
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~-~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v 714 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVSSGQVSKDEK-PVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLC 714 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCC-CCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCccee
Confidence 678888898888899999999862 2221000 00111 223345566555666777776 77888999988888877
Q ss_pred ec-cCCCcccchhhhhHHHHHHhCCc
Q 024724 99 QM-EWSLWTRDIEEEIIPLCRELGIG 123 (263)
Q Consensus 99 q~-~~n~~~~~~~~~~~~~~~~~gi~ 123 (263)
.+ +--+.++. =+...+++.++.
T Consensus 715 ~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 715 ALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred eEcHHHHhCcc---HHHHHHHHcCCC
Confidence 66 44455553 245556666665
No 265
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=22.63 E-value=3.7e+02 Score=22.95 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCC----eEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCC
Q 024724 28 GISMIKHAFSKGIT----FFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEAS 82 (263)
Q Consensus 28 ~~~~l~~A~~~Gi~----~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~ 82 (263)
+.+.++.|.+.|+. +||-.--++.. .|.-+-.++.++++++.|.=-.+|+||-+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks-~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIGFGKT-PEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCCcccC-HHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 67888889999998 99975333322 23333337788888888877789999965
No 266
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=22.62 E-value=1.4e+02 Score=17.89 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHH
Q 024724 165 KNIYFRIENLAKKYKCTSAQLA 186 (263)
Q Consensus 165 ~~~~~~l~~ia~~~g~s~~q~a 186 (263)
-+..++|..+|++.|++.+.+.
T Consensus 11 ~el~~~L~~ls~~t~i~~S~Ll 32 (44)
T PF12651_consen 11 KELYEKLKELSEETGIPKSKLL 32 (44)
T ss_pred HHHHHHHHHHHHHHCCCHHHHH
Confidence 3556899999999999987753
No 267
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=22.48 E-value=1.6e+02 Score=27.19 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=33.9
Q ss_pred CcccccceeccccCCC-CCCCCCCHHH----HHHHHHHHHHcCCC--eEeccCC
Q 024724 2 VLQVSKLGLGCMNLSS-GYSSPVSEED----GISMIKHAFSKGIT--FFDTADV 48 (263)
Q Consensus 2 ~~~vs~lglGt~~~g~-~~~~~~~~~~----~~~~l~~A~~~Gi~--~~DTA~~ 48 (263)
|+...+|.||.=.+|. .|..- +.++ +.++++..+++|++ |+||+-.
T Consensus 75 gf~~~~iiLggDHlGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 127 (420)
T TIGR02810 75 GFPRDRLILGGDHLGPNPWQHL-PADEAMAKAAALVDAYVEAGFTKIHLDASMG 127 (420)
T ss_pred CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 4555689999988885 37654 4443 67899999999999 6798844
No 268
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.47 E-value=4.9e+02 Score=22.14 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh-HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCC-Cce-EEec
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGK-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH-PIT-AVQM 100 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~-~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~-~~~-~~q~ 100 (263)
+.+.+.+.....++.|..++|.....+.-..|+.+-+ +..+++.. + .-|.+-+++++.++++++.+ ..+ ++-
T Consensus 24 ~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~--~--~piSIDT~~~~v~e~aL~~~~G~~iINs- 98 (252)
T cd00740 24 DYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEP--T--VPLMLDSTNWEVIEAGLKCCQGKCVVNS- 98 (252)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C--CcEEeeCCcHHHHHHHHhhCCCCcEEEe-
Confidence 5566666677777899999998764442112222221 22232222 2 23788889999999999862 222 232
Q ss_pred cCCCccc-chhhhhHHHHHHhCCceeecccCcCc
Q 024724 101 EWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 101 ~~n~~~~-~~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
.+.... ....++++.++++|..++.+..-..|
T Consensus 99 -Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 99 -INLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred -CCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 232221 11256888999999999887544333
No 269
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.27 E-value=5e+02 Score=22.24 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCC----CchhHHHHhHHHHHHHHHcCCc-CEEEcCCCCHHHHHHHhc---CCC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQ----NANETLLGKIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHG---VHP 94 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~----G~sE~~lG~~~~l~~l~~~Gki-r~iGvs~~~~~~l~~~~~---~~~ 94 (263)
+|.+...+.++..++.|++-+=+..+.|. ...|+.-- ++...+.. .|++ -..|++..+.....+..+ ...
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~-~~~~~~~~-~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKV-IEFVVDLV-NGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHH-HHHHHHHh-CCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 58899999999999999997755444442 22333211 33333333 3543 456888777665444333 344
Q ss_pred ceEEec--cCCCcccchhhhhHHH----HHHhCCceeeccc
Q 024724 95 ITAVQM--EWSLWTRDIEEEIIPL----CRELGIGIVPYSP 129 (263)
Q Consensus 95 ~~~~q~--~~n~~~~~~~~~~~~~----~~~~gi~v~a~~~ 129 (263)
.+.+++ +|.. +..+++++++ |...++.++.|.-
T Consensus 94 ad~v~v~pP~y~--~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 94 ADGFLVVTPYYN--KPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred CCEEEEcCCcCC--CCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 554444 3332 2123444444 3455788888843
No 270
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=22.16 E-value=2.7e+02 Score=23.02 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHc-CCcCEE-EcCCCCHHHHHHHh
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEE-GKIKYI-GLSEASPDTIRRAH 90 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~-Gkir~i-Gvs~~~~~~l~~~~ 90 (263)
+.++..++.+.+.++|..|+=|+.-|+.+. .-++..+.|.+.+.. =+|+.- |+. +.++..+++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~g--at~~dv~~m~~~v~~~v~IKaaGGir--t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGG--ATVEDVRLMRNTVGDTIGVKASGGVR--TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCC--CCHHHHHHHHHHhccCCeEEEeCCCC--CHHHHHHHH
Confidence 667888999999999999999998886321 223333445555542 234443 233 444444443
No 271
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=22.12 E-value=3.6e+02 Score=24.01 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCC-cCCCchhHHHH-hHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEec
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADV-YGQNANETLLG-KIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~-Yg~G~sE~~lG-~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 100 (263)
+.++..++++..-+.|+.+++.+.- |........-| .+...+++++.-++-=+++... +++..+++++....|.+.+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 6788888888888899999998642 21100000011 1455566777666766677665 6777888887776666554
Q ss_pred -cCCCccc
Q 024724 101 -EWSLWTR 107 (263)
Q Consensus 101 -~~n~~~~ 107 (263)
+--+.++
T Consensus 305 gR~~iadP 312 (337)
T PRK13523 305 GRELLRNP 312 (337)
T ss_pred hHHHHhCc
Confidence 4444444
No 272
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=22.12 E-value=4.3e+02 Score=25.51 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEW 102 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~ 102 (263)
++.+..++.|..-.+.|+.||=. +-| -. .+.+..++ + |-.|+-+-....+.+.+-.. -.-
T Consensus 292 lt~e~~~d~ieeQAeqGVDf~TI--HaG--v~------~~~v~~~~--~--R~tgIVSRGGSima~Wml~h------~kE 351 (607)
T PRK09284 292 LTWEIFRDTLIEQAEQGVDYFTI--HAG--VL------LRYVPLTA--K--RVTGIVSRGGSIMAKWCLAH------HKE 351 (607)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEE--Chh--hH------HHHHHHHh--C--cccCcccCCHHHHHHHHHHc------CCc
Confidence 46677777777777888887752 111 11 23333343 2 67777777766665554321 234
Q ss_pred CCcccchhhhhHHHHHHhCCceeecccCcCcccCCC
Q 024724 103 SLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 138 (263)
Q Consensus 103 n~~~~~~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~ 138 (263)
|++...+ .++++.|++++|.+ .|+.|+-.|.
T Consensus 352 NplYe~F-D~ileI~k~YDVtl----SLGDGLRPG~ 382 (607)
T PRK09284 352 NFLYTHF-EEICEIMAAYDVSF----SLGDGLRPGS 382 (607)
T ss_pred CcHHHHH-HHHHHHHHHhCeee----eccCCcCCCc
Confidence 5555443 68999999999987 5677765444
No 273
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.97 E-value=70 Score=29.25 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=27.3
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.++++||.++-.-||++.+.......+.+|
T Consensus 299 ~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~IP 333 (386)
T PRK12468 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIP 333 (386)
T ss_pred HHHHHHHHHcCCcEEeCHHHHHHHHHhCCCCCCCC
Confidence 57999999999999999999998875443333343
No 274
>cd00512 MM_CoA_mutase Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM)-like family; contains proteins similar to MCM, and the large subunit of Streptomyces coenzyme B12-dependent isobutyryl-CoA mutase (ICM). MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In higher animals, MCM is involved in the breakdown of odd-chain fatty acids, several amino acids, and cholesterol. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with MeaB; MeaB may protect MCM from irreversible inactivation. In some bacteria, MCM is involved in the reverse metabolic reaction, the
Probab=21.95 E-value=3.5e+02 Score=24.84 Aligned_cols=88 Identities=10% Similarity=0.205 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHcCCCeE----eccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEe
Q 024724 24 SEEDGISMIKHAFSKGITFF----DTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQ 99 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~----DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q 99 (263)
+.+++.+.+...++.|.+-+ |.+..+|....+.. ..|.|...|+|-.+.+.+..+++-.+++.+.
T Consensus 12 ~~~~aN~~~~~~L~~G~t~l~l~~d~~~~~g~d~d~~~-----------~~~~vg~~Gv~i~~~~dl~~ll~gi~l~~~~ 80 (399)
T cd00512 12 TAEETNKRYRRNLAAGQTGLSVAFDLPTLRGYDSDNPR-----------DAGEVGMCGVAIDTLEDMDELFQGIPLEQTS 80 (399)
T ss_pred CHHHHHHHHHHHHHCCCceEEEeecCccccCCCccccc-----------ccccccccccccCCHHHHHHHHcCCCcccee
Confidence 78899999999999997755 44445553222221 1467888899877899999999877766554
Q ss_pred ccCCCcccc--hhhhhHHHHHHhCC
Q 024724 100 MEWSLWTRD--IEEEIIPLCRELGI 122 (263)
Q Consensus 100 ~~~n~~~~~--~~~~~~~~~~~~gi 122 (263)
+.+++-... ...-++..++++|+
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~ 105 (399)
T cd00512 81 VSMTINGPALPALALYVVVAERQGV 105 (399)
T ss_pred EEEEeCccHHHHHHHHHHHHHHcCC
Confidence 444332221 12445666666654
No 275
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=21.89 E-value=52 Score=22.46 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCceeeccC---CCcHHHHHHhhhccCCC
Q 024724 165 KNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPG---TTKIKNLDDNIDSLRIK 219 (263)
Q Consensus 165 ~~~~~~l~~ia~~~g~s~~q~al~w~l~~~~v~~vi~g---~~~~~~l~enl~a~~~~ 219 (263)
......+.++-++.|+|..++|=.--+++|.|.-..-| ..+.+.|...+.+++.+
T Consensus 17 ~~l~~~i~~~~~~~~ltQ~e~A~~lgisq~~vS~l~~g~~~~~sl~~L~~~l~aLG~~ 74 (80)
T PF13744_consen 17 AQLMAAIRELREERGLTQAELAERLGISQPRVSRLENGKIDDFSLDTLLRYLEALGGR 74 (80)
T ss_dssp HHHHHHHHHHHHCCT--HHHHHHHHTS-HHHHHHHHTT-GCC--HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCChhHHHHHHcCcccCCCHHHHHHHHHHcCCe
Confidence 34456688888899999999999988888876655533 34677777777776553
No 276
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.77 E-value=6e+02 Score=22.91 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCCc----hhHHHHhHHHHHHHHHcCCcCEEEcC--CCCHHHHHHHhcC--CC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQNA----NETLLGKIGEMKKLVEEGKIKYIGLS--EASPDTIRRAHGV--HP 94 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~----sE~~lG~~~~l~~l~~~Gkir~iGvs--~~~~~~l~~~~~~--~~ 94 (263)
.+.++..+.++.+.+.|++.|--.. |... -|.++ +.++.+++. ...++++ ..+.+.++++.+. ..
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvg--Ge~p~~~~~e~l~---~~i~~Ik~~--~p~i~i~~g~lt~e~l~~Lk~aGv~r 176 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLT--GEHEAKVGVDYIR---RALPIAREY--FSSVSIEVQPLSEEEYAELVELGLDG 176 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEee--CCCCCCCCHHHHH---HHHHHHHHh--CCCceeccCCCCHHHHHHHHHcCCCE
Confidence 5888999999999999999874321 2111 23333 344444443 2233333 3567777665554 33
Q ss_pred ceEEeccCC-----Ccc---c--chh--hhhHHHHHHhCCc
Q 024724 95 ITAVQMEWS-----LWT---R--DIE--EEIIPLCRELGIG 123 (263)
Q Consensus 95 ~~~~q~~~n-----~~~---~--~~~--~~~~~~~~~~gi~ 123 (263)
+.++|=.+| -+. + ..+ .+.++.+++.|+.
T Consensus 177 ~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 177 VTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred EEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 444444443 222 1 222 4567777788875
No 277
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.72 E-value=5.7e+02 Score=22.66 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHc-CCCeEeccCCcCCCchhHHHHh----HHHHHHHHHcCCcCEEEcCC---------CCHHHHHHHh
Q 024724 25 EEDGISMIKHAFSK-GITFFDTADVYGQNANETLLGK----IGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAH 90 (263)
Q Consensus 25 ~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~G~sE~~lG~----~~~l~~l~~~Gkir~iGvs~---------~~~~~l~~~~ 90 (263)
.++..++++...+. |++.+--+ | | |.++-. .+-++++.+-+.++.|.++. .+. .+.+++
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~ls---G-G--DPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~-el~~~L 216 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILIS---G-G--DPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITD-ELCELL 216 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEE---C-C--ccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCH-HHHHHH
Confidence 56777788776644 77766543 2 1 222211 14456666666666555433 233 333444
Q ss_pred cCCCceEEe-ccCCCcc--cchhhhhHHHHHHhCCceeecccCcCcc
Q 024724 91 GVHPITAVQ-MEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 134 (263)
Q Consensus 91 ~~~~~~~~q-~~~n~~~--~~~~~~~~~~~~~~gi~v~a~~~l~~G~ 134 (263)
+...+.+++ ..+|.-. ...-.+.++.+++.|+.+...++|..|.
T Consensus 217 ~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gv 263 (331)
T TIGR00238 217 ASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGV 263 (331)
T ss_pred HhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCc
Confidence 443433333 3455321 1111566777889999999999999874
No 278
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=21.67 E-value=99 Score=23.04 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCcCEEEcCCCCHHHH
Q 024724 61 IGEMKKLVEEGKIKYIGLSEASPDTI 86 (263)
Q Consensus 61 ~~~l~~l~~~Gkir~iGvs~~~~~~l 86 (263)
-+...+++++|| +++|++....+.+
T Consensus 84 eeeI~~~v~~GK-~AFGft~~hie~v 108 (117)
T PF10941_consen 84 EEEIRKEVAEGK-KAFGFTAQHIEQV 108 (117)
T ss_pred HHHHHHHHHcCC-eeeeccHHHHHHH
Confidence 678888999999 8999987655544
No 279
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=21.61 E-value=1.8e+02 Score=29.50 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHh--HHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEEeccCC
Q 024724 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLGK--IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWS 103 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~--~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n 103 (263)
+-+.+++++|.++|+..+- .|. -|..+.. .++ .+-+.-|....===+--+.+.+-++.+....|.+..-|-
T Consensus 17 EIAIRvFRAa~ELgi~TVA---Iys---~ED~~S~HR~KA-DEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYG 89 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVA---IYS---EEDRLSLHRFKA-DESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYG 89 (1149)
T ss_pred hhhHHHHHHHHhcCceEEE---Eee---ccccchhhhccc-cceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcc
Confidence 5689999999999998764 454 2222220 000 111111111000001125677777777788899999999
Q ss_pred CcccchhhhhHHHHHHhCCceeecccCcC
Q 024724 104 LWTRDIEEEIIPLCRELGIGIVPYSPLGR 132 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~~gi~v~a~~~l~~ 132 (263)
.+..+ .++.+.|.+.||.++.=.|-..
T Consensus 90 fLSEn--~efA~~c~eaGI~FIGP~~e~l 116 (1149)
T COG1038 90 FLSEN--PEFARACAEAGITFIGPKPEVL 116 (1149)
T ss_pred cccCC--HHHHHHHHHcCCEEeCCCHHHH
Confidence 98874 5799999999999987555433
No 280
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.57 E-value=2.7e+02 Score=20.28 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHhcCCCceEEeccCCCcccchhhhhHHHHHHhCCceeeccc
Q 024724 79 SEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 79 s~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
+..+.+.+..++...+++++-+-----.+....++.+.++++||++..+..
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 445677777776654355554422111122246789999999999987654
No 281
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.46 E-value=4.6e+02 Score=21.49 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCcCEEEcCCCCHHHHHHHhc---CCCceEEeccCCCcccchhhhhHHHHHHhCC
Q 024724 71 GKIKYIGLSEASPDTIRRAHG---VHPITAVQMEWSLWTRDIEEEIIPLCRELGI 122 (263)
Q Consensus 71 Gkir~iGvs~~~~~~l~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 122 (263)
.++-.| +...+.+.+.++++ ...+.++|+.++--+ ..+.+...+++++.
T Consensus 10 ~~~~~v-~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~--~~~~i~~l~~~~~~ 61 (206)
T PRK09140 10 LPLIAI-LRGITPDEALAHVGALIEAGFRAIEIPLNSPD--PFDSIAALVKALGD 61 (206)
T ss_pred CCEEEE-EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc--HHHHHHHHHHHcCC
Confidence 344444 44456666555444 367888988876533 24456666667664
No 282
>PRK05927 hypothetical protein; Provisional
Probab=21.46 E-value=6e+02 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEec
Q 024724 23 VSEEDGISMIKHAFSKGITFFDT 45 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DT 45 (263)
++.++..+.++.+.+.|++.|-.
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i 98 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLL 98 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEE
Confidence 57899999999999999987764
No 283
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=21.42 E-value=3e+02 Score=21.40 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcC-CC---------chhHHHHh--------------------HHH-HHHHHHcCC
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYG-QN---------ANETLLGK--------------------IGE-MKKLVEEGK 72 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G---------~sE~~lG~--------------------~~~-l~~l~~~Gk 72 (263)
.++.+...++.|++.|.++|++--... .| .=++++-. ++. ++.+++-|.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~~~~~~~~l~~~i~~~~~ 90 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTRYPGLEAKVAELLREYGL 90 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 467889999999999988775422211 00 01111111 233 333445577
Q ss_pred cCEEEcCCCCHHHHHHHhcCCC-ceEEeccCC-----------------Cccc---chhhhhHHHHHHhCCceeeccc
Q 024724 73 IKYIGLSEASPDTIRRAHGVHP-ITAVQMEWS-----------------LWTR---DIEEEIIPLCRELGIGIVPYSP 129 (263)
Q Consensus 73 ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n-----------------~~~~---~~~~~~~~~~~~~gi~v~a~~~ 129 (263)
-+.+=+++++...+.++.+..+ +.+..+..+ .+.. .....+++.++++|+.+.+|..
T Consensus 91 ~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 91 EERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLTPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred cCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCCHHHHHHHHHcCCEEEEEcC
Confidence 7888888888877766655421 111111010 0000 0125788899999999988864
No 284
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=21.37 E-value=6.1e+02 Score=22.92 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCCCceeeccCCCcHHHHHHhhhccC
Q 024724 182 SAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR 217 (263)
Q Consensus 182 ~~q~al~w~l~~~~v~~vi~g~~~~~~l~enl~a~~ 217 (263)
+.++-+.+-.---++..++..+++++++++..+.++
T Consensus 133 ~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~ 168 (354)
T PF01959_consen 133 AEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLK 168 (354)
T ss_pred HHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHh
Confidence 334444443333345888999999999888877664
No 285
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.30 E-value=3.8e+02 Score=24.02 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=38.4
Q ss_pred cccceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeccCCcC-CCchhHHHH
Q 024724 5 VSKLGLGCMNLSS----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-QNANETLLG 59 (263)
Q Consensus 5 vs~lglGt~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG 59 (263)
+..|.+|.-++.. ..+...+.+++.++++.+-++|+..+-+--+|| +|++++-+-
T Consensus 114 ~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~ 173 (353)
T PRK05904 114 VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLD 173 (353)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHH
Confidence 5667777666642 255556888999999999999987443334677 577766655
No 286
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.27 E-value=6.2e+02 Score=22.95 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=40.5
Q ss_pred cCEEEcCCCCHHHHHHHhc-CCCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCccc
Q 024724 73 IKYIGLSEASPDTIRRAHG-VHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 73 ir~iGvs~~~~~~l~~~~~-~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
++-.-+...+.+.+++++. ..++.++..+-|+.-.- ...++.+.|+++|+-++.-...+.|.+
T Consensus 118 i~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~ 182 (388)
T PRK08861 118 FKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVL 182 (388)
T ss_pred eEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 4433344456777777664 34455555566654332 236789999999999998888776654
No 287
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=89 Score=27.75 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=50.4
Q ss_pred EEcCCCCHHHHHHHhcCCCceEEec---cCCCcccchhhhhHHHHHHhCCceeec---ccCcCcccCCCCcCCCCCCCcc
Q 024724 76 IGLSEASPDTIRRAHGVHPITAVQM---EWSLWTRDIEEEIIPLCRELGIGIVPY---SPLGRGFFGGKAVVESVPADSI 149 (263)
Q Consensus 76 iGvs~~~~~~l~~~~~~~~~~~~q~---~~n~~~~~~~~~~~~~~~~~gi~v~a~---~~l~~G~L~~~~~~~~~~~~~~ 149 (263)
+|.+.-....+.+-++..-+|+.-+ .|+.+.. -...+++|+++|..++.- .|+++-...|. +++..+
T Consensus 110 yg~~~~Pt~emle~~DV~vfDiQDvG~R~Ytyiyt--m~yameAs~e~~k~fiVLDRPNP~gG~~VeGp-----lld~~y 182 (409)
T COG3876 110 YGVKEKPTKEMLEDCDVFVFDIQDVGVRSYTYIYT--MAYAMEASAENGKEFIVLDRPNPMGGNIVEGP-----LLDPRY 182 (409)
T ss_pred eecccCCCHHHHhcCCEEEEechhccceehhHHHH--HHHHHHHHHHcCCceEEeCCCCCCCCccccCC-----CCCccc
Confidence 4555555455555554433343222 3443333 256899999999988864 56665444333 222111
Q ss_pred cccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 024724 150 LHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVL 191 (263)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q~al~w~l 191 (263)
+.. .-+-.|--.||+|+.++|+-|--
T Consensus 183 ~sf----------------vg~ypIP~~yGmT~GElAllfn~ 208 (409)
T COG3876 183 KSF----------------VGLYPIPYCYGMTPGELALLFNK 208 (409)
T ss_pred ccc----------------ccccCcccccCCCHHHHHHHhhh
Confidence 111 12233455688888888876543
No 288
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=21.14 E-value=2.1e+02 Score=27.97 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHcCCCeEe-ccCCc----CC----Cc-hhHHHHh----HHHHHHHHHcCCcCEE
Q 024724 25 EEDGISMIKHAFSKGITFFD-TADVY----GQ----NA-NETLLGK----IGEMKKLVEEGKIKYI 76 (263)
Q Consensus 25 ~~~~~~~l~~A~~~Gi~~~D-TA~~Y----g~----G~-sE~~lG~----~~~l~~l~~~Gkir~i 76 (263)
.+.+.++++.|++ ++..-| .-..| .. |- .|.++.. ++.|.+++++|+||.+
T Consensus 370 ~e~A~~ii~~Aie-~f~~r~~~~~v~IP~~~~~~~~GFs~eai~~~l~~~~~pLidaIk~G~Irgv 434 (621)
T TIGR01702 370 EETAKTIIRMAIE-AFKERKENQPVYIPQQKQKVVVGFSEEALVKALGGQNKPLVDAIASGKIKGV 434 (621)
T ss_pred HHHHHHHHHHHHh-hccccccccccccCCcCceEEecccHHHHHHHhccchHHHHHHHHhCCCceE
Confidence 4567899999997 443333 11111 11 22 3445332 6789999999999987
No 289
>PRK09108 type III secretion system protein HrcU; Validated
Probab=20.92 E-value=89 Score=28.20 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=23.4
Q ss_pred hhhHHHHHHhCCceeecccCcCccc
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFF 135 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L 135 (263)
..+.+.++++||.++-.-||++.+.
T Consensus 294 ~~Ir~~A~e~~VPvven~pLARaLy 318 (353)
T PRK09108 294 LALRRHAHALGIPIVGNPPVARALY 318 (353)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHh
Confidence 5799999999999999999999987
No 290
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=20.88 E-value=4.3e+02 Score=23.26 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHH---hHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhcCCCceEEec
Q 024724 26 EDGISMIKHAFSKGITFFDTADVYGQNANETLLG---KIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQM 100 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG---~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 100 (263)
++..++.+.+.+.|+..+....-.. .+..-| .|+.+.++++.-.|-=||.... +++...++++....|.+++
T Consensus 148 ~~~~~~a~~l~~~Gvd~i~Vh~Rt~---~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 148 ERKFEIADAVQQAGATELVVHGRTK---EDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred hHHHHHHHHHHhcCCCEEEECCCCC---ccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 3456777777777877776532111 111112 2666777777666777776664 6677777777677777766
No 291
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=20.80 E-value=1.7e+02 Score=20.47 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHh
Q 024724 166 NIYFRIENLAKKYKCTSAQLALAWV 190 (263)
Q Consensus 166 ~~~~~l~~ia~~~g~s~~q~al~w~ 190 (263)
+..+.|.++|++.|+|.+|+.=+++
T Consensus 51 ~~K~~L~~lc~~~GlTQae~IE~LI 75 (84)
T PF10723_consen 51 ELKERLEELCKEQGLTQAEMIERLI 75 (84)
T ss_dssp HHHHHHHHHHHHS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4567999999999999999764443
No 292
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=20.77 E-value=4.8e+02 Score=23.96 Aligned_cols=127 Identities=14% Similarity=0.053 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHcCCCeEecc---C-CcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCC-CHHHHHHHhc-C---CCc-
Q 024724 26 EDGISMIKHAFSKGITFFDTA---D-VYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHG-V---HPI- 95 (263)
Q Consensus 26 ~~~~~~l~~A~~~Gi~~~DTA---~-~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~-~---~~~- 95 (263)
++..+.++..-+.|...+=++ - ++| .-.+|.+|+++|.|..+=..|- -...++..+- . .++
T Consensus 188 ~~ia~~lr~~r~~gG~Iv~V~GPAvvhtg---------a~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG~di~ 258 (407)
T TIGR00300 188 EQIAWEMYEIRDKGGKIGVVAGPAVIHTG---------AAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLGVDIQ 258 (407)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCeEEecC---------cHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCcccccccc
Confidence 445566666666554433221 0 233 1378889999999999865553 2233433321 1 011
Q ss_pred ---eEEeccCCCccc------------c-----hhhhhHHHHHHhCCceeecccCcCcccCCCCcCCCCCCCcccccCCC
Q 024724 96 ---TAVQMEWSLWTR------------D-----IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPR 155 (263)
Q Consensus 96 ---~~~q~~~n~~~~------------~-----~~~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~~~~~~~~~~~ 155 (263)
.+-.-+||.++- . ...+++-.|-++||.++--+.. ++..++|+
T Consensus 259 ~~~~v~~GH~~Hl~~IN~irraGSI~~aVe~G~l~~Gimy~cvk~~VPfVLAGSI--------RDDGPLPd--------- 321 (407)
T TIGR00300 259 RGIPVPGGHRHHLKAINSVRRAGGIRDAVEQGIIKKGVMYECVKNNIPYVLAGSI--------RDDGPLPD--------- 321 (407)
T ss_pred ccccCCCchHHHHHHHHHHHHcCCHHHHHHhCCCccchHHHHHhCCCCEEEeeec--------cCCCCCCc---------
Confidence 111224443331 0 1157888999999988532211 22233332
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcCCCH
Q 024724 156 YKGENLDRNKNIYFRIENLAKKYKCTS 182 (263)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~ia~~~g~s~ 182 (263)
-.....+..+++++.+++.++-+
T Consensus 322 ----vitDv~~AQ~amR~~~~~a~~vi 344 (407)
T TIGR00300 322 ----VITDVVRAQSKMRELLQGADMVL 344 (407)
T ss_pred ----chhhHHHHHHHHHHHhccCCeeh
Confidence 22345666677888877766543
No 293
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=20.46 E-value=1.8e+02 Score=24.19 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=32.2
Q ss_pred HcCCCHHHHHHHHhhcCCCceeeccCCC--cHHHHHHhhhcc
Q 024724 177 KYKCTSAQLALAWVLGQGDDVVPIPGTT--KIKNLDDNIDSL 216 (263)
Q Consensus 177 ~~g~s~~q~al~w~l~~~~v~~vi~g~~--~~~~l~enl~a~ 216 (263)
+...|=.++|+.|++.++....++.|+. +.+|.-.|+..+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll 115 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLL 115 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 4456889999999999998777777553 899999998665
No 294
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=20.36 E-value=5.5e+02 Score=21.96 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeccCCcCCC----chhHHHHhHHHHHHHHHcCCc-CEEEcCCCCHHHHHHHhc---CCC
Q 024724 23 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANETLLGKIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHG---VHP 94 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G----~sE~~lG~~~~l~~l~~~Gki-r~iGvs~~~~~~l~~~~~---~~~ 94 (263)
+|.+..++.++..++.|++-+=....-|.+ .+|+. --++...+..+ |++ -..|++..+..+..+..+ ...
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~-~l~~~~~~~~~-~~~~vi~gv~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERK-ELLEIVVEAAA-GRVPVIAGVGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHH-HHHHHHHHHHT-TSSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHH-HHHHHHHHHcc-CceEEEecCcchhHHHHHHHHHHHhhcC
Confidence 588999999999999999987665554432 22321 11233333333 554 566888887766544433 244
Q ss_pred ceEEe--ccCCCcccchhhhhHHHHH----HhCCceeecc
Q 024724 95 ITAVQ--MEWSLWTRDIEEEIIPLCR----ELGIGIVPYS 128 (263)
Q Consensus 95 ~~~~q--~~~n~~~~~~~~~~~~~~~----~~gi~v~a~~ 128 (263)
.+.++ .+|..... +++++++++ .-++.++.|.
T Consensus 97 ad~v~v~~P~~~~~s--~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPS--QEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp -SEEEEEESTSSSCC--HHHHHHHHHHHHHHSSSEEEEEE
T ss_pred ceEEEEeccccccch--hhHHHHHHHHHHhhcCCCEEEEE
Confidence 44333 34333222 344555544 5578888775
No 295
>PRK08156 type III secretion system protein SpaS; Validated
Probab=20.32 E-value=76 Score=28.71 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=27.1
Q ss_pred hhhHHHHHHhCCceeecccCcCcccCCCCcCCCCC
Q 024724 111 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 145 (263)
Q Consensus 111 ~~~~~~~~~~gi~v~a~~~l~~G~L~~~~~~~~~~ 145 (263)
..+.+.++++||.++-.-||++.+.......+.+|
T Consensus 287 ~~IreiA~e~~VPiven~pLARaLY~~vevg~~IP 321 (361)
T PRK08156 287 LAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFVS 321 (361)
T ss_pred HHHHHHHHHCCCCEeeCHHHHHHHHHhCCCCCcCC
Confidence 57999999999999999999998765443333343
No 296
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.29 E-value=4.6e+02 Score=21.01 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeccCCcCCCchhHHHHhHHHHHHHHHc--CCcCEEEcCCCCHH--HHHHHhcCCCceEEe
Q 024724 24 SEEDGISMIKHAFSKGITFFDTADVYGQNANETLLGKIGEMKKLVEE--GKIKYIGLSEASPD--TIRRAHGVHPITAVQ 99 (263)
Q Consensus 24 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~~~~l~~l~~~--Gkir~iGvs~~~~~--~l~~~~~~~~~~~~q 99 (263)
+.+++.++++.. +.|+..+.....+- . -.| .+.++++++. ++.-.+++--.++. +++++.+.. .+++-
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l~---~--~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i~ 81 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPLI---K--NEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAG-ADIVT 81 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHHH---H--HhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcC-CCEEE
Confidence 788999999987 88988887631111 0 112 5667777766 33333333222333 566665542 22222
Q ss_pred ccCCCcccchhhhhHHHHHHhCCceee
Q 024724 100 MEWSLWTRDIEEEIIPLCRELGIGIVP 126 (263)
Q Consensus 100 ~~~n~~~~~~~~~~~~~~~~~gi~v~a 126 (263)
+++-. ....-.+++++|+++|+.++.
T Consensus 82 vh~~~-~~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 82 VLGVA-DDATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred EeccC-CHHHHHHHHHHHHHcCCEEEE
Confidence 22221 111126799999999998875
No 297
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.24 E-value=6.9e+02 Score=23.04 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHhcC-CCceEEeccCCCcccc-hhhhhHHHHHHhCCceeecccCcCc
Q 024724 79 SEASPDTIRRAHGV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 133 (263)
Q Consensus 79 s~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~~~l~~G 133 (263)
...+.+.++++++. ....++..+.|+.-.- .-.++.+.|+++|+-++.-.+.+.+
T Consensus 135 d~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 135 DPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred CCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 33467778777653 3444455555553332 1268899999999999877776644
No 298
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=20.03 E-value=3.9e+02 Score=26.69 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHcCCCe----EeccCCcCCCchhHHHHhHHHHHHHHHcCCcCEEEcCCCCHHHHHHHhcCCCceEE
Q 024724 23 VSEEDGISMIKHAFSKGITF----FDTADVYGQNANETLLGKIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 98 (263)
Q Consensus 23 ~~~~~~~~~l~~A~~~Gi~~----~DTA~~Yg~G~sE~~lG~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 98 (263)
.+.+++.+.++..++.|.+- ||.+..+|....... ..|.|...|++-.+.+.+..+++-.+++-+
T Consensus 83 ~~~~~an~~~~~~L~~G~t~l~l~~d~~t~~G~D~d~~~-----------~~~~vg~~Gv~i~s~~dl~~ll~gi~l~~~ 151 (714)
T PRK09426 83 STAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPR-----------VVGDVGKAGVAIDSVEDMKILFDGIPLDKM 151 (714)
T ss_pred CCHHHHHHHHHHHHHCCCceEEEEeecccccCCCcccch-----------hccccCCCCCCcCCHHHHHHHHcCCCccce
Confidence 37889999999999999775 466667775333322 235777888887889999999987776655
Q ss_pred eccCCCcccc--hhhhhHHHHHHhCCc
Q 024724 99 QMEWSLWTRD--IEEEIIPLCRELGIG 123 (263)
Q Consensus 99 q~~~n~~~~~--~~~~~~~~~~~~gi~ 123 (263)
-+.+++-... ...-++..+.++|+.
T Consensus 152 ~v~~~~~~~~~~~~a~~~~~~~~~g~~ 178 (714)
T PRK09426 152 SVSMTMNGAVLPILAFYIVAAEEQGVP 178 (714)
T ss_pred eEEEEeCCcHHHHHHHHHHHHHHcCCC
Confidence 5545432222 123456677765543
Done!