Query 024725
Match_columns 263
No_of_seqs 120 out of 1163
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 1E-67 2.2E-72 468.5 25.8 254 1-262 55-309 (311)
2 PLN02717 uridine nucleosidase 100.0 1.4E-66 3E-71 469.3 29.1 263 1-263 53-316 (316)
3 PRK09955 rihB ribonucleoside h 100.0 3.8E-65 8.3E-70 458.7 28.5 251 2-262 57-308 (313)
4 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 6.2E-63 1.4E-67 443.7 27.3 250 1-260 52-302 (302)
5 cd02653 nuc_hydro_3 NH_3: A su 100.0 1.2E-62 2.6E-67 444.2 27.9 253 1-262 52-308 (320)
6 PRK10443 rihA ribonucleoside h 100.0 2.8E-62 6.1E-67 440.4 28.2 253 1-262 55-309 (311)
7 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 8.8E-62 1.9E-66 436.6 27.0 252 1-257 52-304 (304)
8 PRK10768 ribonucleoside hydrol 100.0 1.8E-61 3.9E-66 434.2 27.3 247 1-262 55-302 (304)
9 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 3.1E-61 6.7E-66 432.4 27.1 247 1-256 53-305 (306)
10 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 1.4E-58 3.1E-63 417.5 25.0 247 1-256 56-318 (318)
11 PTZ00313 inosine-adenosine-gua 100.0 1E-57 2.3E-62 413.0 27.2 249 1-261 56-324 (326)
12 cd00455 nuc_hydro nuc_hydro: N 100.0 2E-57 4.3E-62 406.7 27.1 245 1-256 51-295 (295)
13 PF01156 IU_nuc_hydro: Inosine 100.0 1.2E-57 2.7E-62 411.1 15.7 250 2-262 55-311 (312)
14 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 2.9E-55 6.2E-60 394.3 23.8 238 1-256 55-307 (312)
15 cd02648 nuc_hydro_1 NH_1: A su 100.0 3E-53 6.4E-58 383.3 23.5 219 6-225 78-348 (367)
16 KOG2938 Predicted inosine-urid 100.0 2.7E-42 5.9E-47 309.9 17.4 254 1-262 74-334 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 100.0 2.7E-34 5.9E-39 255.1 15.9 192 1-214 50-265 (293)
18 PF07632 DUF1593: Protein of u 92.0 0.24 5.3E-06 43.5 4.5 51 48-99 98-158 (260)
19 KOG2938 Predicted inosine-urid 86.5 0.44 9.4E-06 43.8 2.1 88 48-136 191-293 (350)
20 PF00455 DeoRC: DeoR C termina 78.0 12 0.00025 30.4 7.3 73 50-138 29-101 (161)
21 PRK09802 DNA-binding transcrip 74.4 15 0.00032 32.5 7.5 59 65-138 130-188 (269)
22 PRK13509 transcriptional repre 70.6 22 0.00047 31.1 7.5 68 53-138 106-173 (251)
23 PRK10411 DNA-binding transcrip 57.1 50 0.0011 28.6 7.2 58 66-138 117-174 (240)
24 PRK10681 DNA-binding transcrip 56.6 55 0.0012 28.5 7.4 59 65-138 116-174 (252)
25 TIGR01849 PHB_depoly_PhaZ poly 54.6 57 0.0012 30.8 7.6 56 49-104 153-211 (406)
26 COG1349 GlpR Transcriptional r 53.0 81 0.0017 27.5 7.9 73 50-138 101-173 (253)
27 PRK10906 DNA-binding transcrip 49.1 1E+02 0.0023 26.8 8.0 58 66-138 116-173 (252)
28 COG1206 Gid NAD(FAD)-utilizing 47.6 8.1 0.00018 35.5 0.7 26 64-97 129-154 (439)
29 PRK10434 srlR DNA-bindng trans 42.4 1.3E+02 0.0029 26.2 7.6 38 93-138 137-174 (256)
30 CHL00181 cbbX CbbX; Provisiona 38.5 58 0.0012 29.0 4.8 46 48-93 144-189 (287)
31 cd03307 Mta_CmuA_like MtaA_Cmu 34.0 2E+02 0.0043 25.8 7.6 29 126-154 181-209 (326)
32 PF12953 DUF3842: Domain of un 33.2 2.4E+02 0.0053 22.2 7.9 44 117-168 84-127 (131)
33 COG1927 Mtd Coenzyme F420-depe 32.2 1.9E+02 0.0042 24.9 6.5 74 51-136 18-94 (277)
34 cd00717 URO-D Uroporphyrinogen 31.7 2.8E+02 0.0061 24.9 8.3 27 127-155 188-214 (335)
35 TIGR02881 spore_V_K stage V sp 30.7 77 0.0017 27.5 4.3 44 49-92 127-170 (261)
36 PF08759 DUF1792: Domain of un 27.6 62 0.0013 28.0 2.9 26 52-77 155-181 (225)
37 COG1243 ELP3 Histone acetyltra 24.3 1.2E+02 0.0026 29.2 4.4 68 84-155 128-206 (515)
38 TIGR02880 cbbX_cfxQ probable R 23.4 1.9E+02 0.0042 25.5 5.5 47 49-95 144-190 (284)
39 PF12697 Abhydrolase_6: Alpha/ 23.4 2E+02 0.0044 22.5 5.3 51 49-102 50-102 (228)
40 TIGR03728 glyco_access_1 glyco 22.1 87 0.0019 27.7 2.9 26 52-77 173-199 (265)
41 PF02780 Transketolase_C: Tran 21.5 1.2E+02 0.0026 22.9 3.4 18 64-81 10-27 (124)
42 PF01981 PTH2: Peptidyl-tRNA h 20.6 62 0.0014 24.6 1.5 13 63-75 90-102 (116)
43 PF13964 Kelch_6: Kelch motif 20.5 1E+02 0.0022 19.1 2.3 11 92-102 12-22 (50)
44 TIGR00696 wecB_tagA_cpsF bacte 20.1 2E+02 0.0044 23.6 4.6 22 53-74 90-111 (177)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-67 Score=468.54 Aligned_cols=254 Identities=39% Similarity=0.614 Sum_probs=239.3
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++||.+||||+|+.+||.++. ..++++||++||++..+|.+..++.+++|+++|+|+++++|++||||++|||||||+|
T Consensus 55 ~~g~~~iPV~~Ga~~Pl~r~~-~~a~~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlA 133 (311)
T COG1957 55 LLGRADIPVYAGAARPLLREP-ITAPEIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALA 133 (311)
T ss_pred HcCCCCCCeecCCCCCcCCCC-cchhhhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHH
Confidence 478999999999999999964 6678999999999998888777777899999999999999999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChh
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY 160 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~ 160 (263)
++++|++.++||+|+||||++..+||++|.||||+|.|||||++||+|+++++|+|||+|+|+..+.+.++.+++.+++.
T Consensus 134 l~~~P~i~~~ik~iviMGGa~~~~GNvtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~ 213 (311)
T COG1957 134 LRKDPEIAKRIKEIVIMGGAFFVPGNVTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPA 213 (311)
T ss_pred HHhCcchhhhhcEEEEecCccCCCCCcCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCCcccccCCCCCCCC
Q 024725 161 VQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYS 239 (263)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~~~~~~ 239 (263)
++++.+++++|.+++...+|.+|.++||++|++++++|++|+.+++.|+||+.| +|+|+|+.|+... +...+
T Consensus 214 ~~~~~d~l~~~~~~~~~~~g~~g~~~hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d~~~~-------~~~~~ 286 (311)
T COG1957 214 AELVADLLDFYLAYYKSRQGLDGAPLHDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRGV-------LGKPP 286 (311)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEEeccc-------CCCCC
Confidence 999999999999999887788999999999999999999999999999999997 9999999997532 34578
Q ss_pred CcEEEeecCHHHHHHHHHHHHhc
Q 024725 240 PVSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 240 ~v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
|++++.++|.++|++.+.++|.+
T Consensus 287 n~~v~~~vD~~~f~~~i~~~l~~ 309 (311)
T COG1957 287 NAQVAVDVDVEGFLDLILEALAR 309 (311)
T ss_pred CeEEeeccCHHHHHHHHHHHHhc
Confidence 99999999999999999999875
No 2
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=1.4e-66 Score=469.27 Aligned_cols=263 Identities=71% Similarity=1.146 Sum_probs=238.5
Q ss_pred CCCCCCCeEeeCCCCCCCCC-CCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGG-KPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLAL 79 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~-~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~ 79 (263)
++||.|||||+|++.||.+. ..+.+.++||.||||+..+|.+...+.+++|+++|+++++++|++||||++|||||||+
T Consensus 53 ~~g~~diPV~~Ga~~pl~~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itiva~GPLTNlA~ 132 (316)
T PLN02717 53 MAGRPDVPVAEGSHEPLKGGTKPRIADFVHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTVVALGPLTNLAL 132 (316)
T ss_pred HcCCCCCCEEeCCCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHhCCCCEEEEECCcHHHHHH
Confidence 47999999999999999985 24667789999999999888776666788999999999999999999999999999999
Q ss_pred HHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCCh
Q 024725 80 AIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGR 159 (263)
Q Consensus 80 al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~ 159 (263)
|++++|++.++||+||+|||++...||++|.+|||||+|||||++||+|+++++|+|||+|+++.++.++++++.+.+++
T Consensus 133 al~~~P~~~~~ik~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~ 212 (316)
T PLN02717 133 AIKLDPSFAKKVGQIVVLGGAFFVNGNVNPAAEANIFGDPEAADIVFTSGADITVVGINVTTQVVLTDADLEELRDSKGK 212 (316)
T ss_pred HHHHChHHHhhcCEEEEeCCCcCCCCCCCchhhhhhhcCHHHHHHHHhCCCCeEEEcccccCceecCHHHHHHHHHcCCh
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999887889
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCCcccccCCCCCCCC
Q 024725 160 YVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYS 239 (263)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g~~~G~~~~d~~~~~~~~~~~~~~~~ 239 (263)
.++++.+++++|.+++.+.++..++++||++|++++++|++|++++.+++|+++|.+||+|++|+....+.....+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~Ve~~g~trG~tv~d~~~~~~~~~~~~~~~~ 292 (316)
T PLN02717 213 YAQFLCDICKFYRDWHRKSYGIDGIYLHDPTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDNGLKRWNGENAWTGRP 292 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccCCcHHHhHHhcCccceEEEEecEEEEeCCCCCceEeeeccccccccccccCCCC
Confidence 99999999999999887777788999999999999999999999999999999999999999997432221111234457
Q ss_pred CcEEEeecCHHHHHHHHHHHHhcC
Q 024725 240 PVSVAWTVNVDKVLNYIKRLLMKQ 263 (263)
Q Consensus 240 ~v~v~~~vd~~~f~~~l~~~l~~~ 263 (263)
|++|+.++|.++|+++|+++|.++
T Consensus 293 n~~v~~~vD~~~f~~~~~~~l~~~ 316 (316)
T PLN02717 293 PVKVAVTVDAPAVVELVKERLMAS 316 (316)
T ss_pred CCEEeeecCHHHHHHHHHHHhccC
Confidence 999999999999999999999764
No 3
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=3.8e-65 Score=458.70 Aligned_cols=251 Identities=27% Similarity=0.474 Sum_probs=230.5
Q ss_pred CCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHHH
Q 024725 2 AGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAI 81 (263)
Q Consensus 2 ~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~al 81 (263)
+|+ +||||+|+++||.++. ..+.++||.||||+..+|.+...+.+++|+++|++++++||++||||++|||||||+|+
T Consensus 57 ~g~-~IPV~~Ga~~PL~~~~-~~~~~~HG~~Glg~~~~~~~~~~~~~~~A~~~i~~~~~~~p~eitiva~GPLTNlA~al 134 (313)
T PRK09955 57 LEI-NVPVYAGMPQPIMRQQ-IVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAM 134 (313)
T ss_pred hCC-CCCEEeCCCCCCCCCC-CCccccCCCCCCCCCCCCCcccccCCCcHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHH
Confidence 676 7999999999999864 55678999999999988876666677899999999999999999999999999999999
Q ss_pred HhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChhh
Q 024725 82 KRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYV 161 (263)
Q Consensus 82 ~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~~ 161 (263)
+++|++.++|++||+|||++. .||++|.+|||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.+
T Consensus 135 ~~~P~~~~~i~~iviMGG~~~-~GN~tp~aEfN~~~DPeAA~iV~~s~~~i~~v~lDvT~~~~~~~~~~~~l~~~~~~~~ 213 (313)
T PRK09955 135 RMQPAILPKIREIVLMGGAYG-TGNFTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAG 213 (313)
T ss_pred HHChHHHHhCCEEEEeCCCCC-CCCCCCCeeeccccCHHHHHHHHhCCCCEEEeccccccceecCHHHHHHHHhcCChHH
Confidence 999999999999999999985 6999999999999999999999999999999999999999999999999998788999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCC
Q 024725 162 QLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSP 240 (263)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~~~~~~~ 240 (263)
+++.+++++|.+++.+.++..++++||++|++++++|++|++++.+|+||+.| .+||+|++|.... +...+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~g~~g~~lhD~la~a~~~~P~l~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n 286 (313)
T PRK09955 214 ELFSDIMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPAN 286 (313)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHcChhhEEEEEeeEEEEeCCCCCCceEEeccccc-------CCCCCC
Confidence 99999999999888777788899999999999999999999999999999985 8999999996432 124579
Q ss_pred cEEEeecCHHHHHHHHHHHHhc
Q 024725 241 VSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 241 v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
++|+.++|.++|+++|+++|..
T Consensus 287 ~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T PRK09955 287 TKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_pred CEEeeecCHHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 4
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=6.2e-63 Score=443.71 Aligned_cols=250 Identities=33% Similarity=0.524 Sum_probs=227.2
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++||+|||||+|+++||.++. ..++++||.||||+..+|.+...+..++|+++|++++++||++||||++|||||||+|
T Consensus 52 ~~g~~diPV~~Ga~~pl~~~~-~~~~~~hG~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~a 130 (302)
T cd02651 52 LLGRTDVPVAAGAARPLVRPL-ITASDIHGESGLDGADLPPPPRRPEDIHAVDAIIDTLRASPEPITLVATGPLTNIALL 130 (302)
T ss_pred HhCCCCCcEEcCCCcCcCCCC-CCCcCCCCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHH
Confidence 479999999999999998864 4567899999999998887666666789999999999999999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChh
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY 160 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~ 160 (263)
++++|++.++||+||+|||++ ..||++|.+|||||+|||||++||+|++|++++|||+|+++.++.+++++|.+.+++.
T Consensus 131 l~~~P~~~~~ik~iviMGG~~-~~GN~tp~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~ 209 (302)
T cd02651 131 LRKYPELAERIKEIVLMGGAL-GRGNITPAAEFNIFVDPEAAKIVFNSGIPITMVPLDVTHKALATPEVIERIRALGNPV 209 (302)
T ss_pred HHHChhhHhhcCEEEEecCCc-CCCCCChHHHhhcccCHHHHHHHHhCCCCeEEeccceeeeeccCHHHHHHHHHcCChH
Confidence 999999999999999999998 6899999999999999999999999999999999999999999999999999878889
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCCcccccCCCCCCCC
Q 024725 161 VQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYS 239 (263)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~~~~~~ 239 (263)
++|+.+++++|.+++.+.. ..++++||++|++++++|++|++++.+++|+++| .+||++++|.... ....+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~-~~~~~l~D~la~~~~~~p~~~~~~~~~v~Ve~~g~~~rG~tv~d~~~~-------~~~~~ 281 (302)
T cd02651 210 GKMLAELLDFFAETYGSAF-TEGPPLHDPCAVAYLLDPELFTTKRANVDVETEGELTRGRTVVDLRGV-------TGRPA 281 (302)
T ss_pred HHHHHHHHHHHHHHHHhhc-cCCCCCCcHHHhHHhcCccceEEEEeeEEEEcCCCCCCceEEEecccc-------CCCCC
Confidence 9999999999887665433 5689999999999999999999999999999998 8999999986432 12357
Q ss_pred CcEEEeecCHHHHHHHHHHHH
Q 024725 240 PVSVAWTVNVDKVLNYIKRLL 260 (263)
Q Consensus 240 ~v~v~~~vd~~~f~~~l~~~l 260 (263)
|++|++++|.++|+++|.++|
T Consensus 282 ~~~v~~~vd~~~f~~~l~~~l 302 (302)
T cd02651 282 NAQVAVDVDVEKFWDLLLEAL 302 (302)
T ss_pred CcEEeeecCHHHHHHHHHHhC
Confidence 899999999999999999875
No 5
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.2e-62 Score=444.21 Aligned_cols=253 Identities=29% Similarity=0.466 Sum_probs=230.1
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++||.|||||+|+++||.++. ..+.++||.||||+..+|.+...+.+++|+++|+++++++| +|+||++|||||||+|
T Consensus 52 ~~g~~dIPV~~Ga~~pl~~~~-~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~-eitiva~GPLTNlA~a 129 (320)
T cd02653 52 LLGRTDIPVYLGADKPLAGPL-TTAQDTHGPDGLGYAELPASTRTLSDESAAQAWVDLARAHP-DLIGLATGPLTNLALA 129 (320)
T ss_pred HcCCCCCcEEeCCCccCCCCC-CCcccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-CeEEEECCchHHHHHH
Confidence 479999999999999998864 45678999999999988876666678899999999999999 9999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhc----CCcEEEEcCccccccccCHHHHHHHHhc
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS----GANIAVVGINITTQVKLTDADFLELRQS 156 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s----~~~i~lvpldvt~~~~~~~~~~~~l~~~ 156 (263)
++++|++.++||+||+|||++...||++|.+|||||+|||||++||++ +++++|+|||+|+++.++.++++++.+.
T Consensus 130 l~~~P~~~~~ik~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~~~l~~~ 209 (320)
T cd02653 130 LREEPELPRLLRRLVIMGGAFNSRGNTSPVAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLLERLARA 209 (320)
T ss_pred HHHChHHHHhcCEEEEECCCcCCCCCCCcHhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHHHHHHhc
Confidence 999999999999999999999888999999999999999999999998 6999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCCcccccCCCCC
Q 024725 157 KGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWT 236 (263)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g~~~G~~~~d~~~~~~~~~~~~~ 236 (263)
.++.++++.+++++|.+++.+..+..++++||++|++++++|++|++++.+++|+++|..+|+|++|+... +.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lhD~lAva~~~~P~l~~~~~~~v~Ve~~g~~~G~tv~d~~~~-------~~ 282 (320)
T cd02653 210 KDSVGAFIEDALRFYFEFHWAYGHGYGAVIHDPLAAAVALNPNLARGRPAYVDVECTGVLTGQTVVDWAGF-------WG 282 (320)
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhheEEEEeeEEEEeCCCCCceEEEecccc-------CC
Confidence 88999999999999998876544445789999999999999999999999999999986679999996432 23
Q ss_pred CCCCcEEEeecCHHHHHHHHHHHHhc
Q 024725 237 GYSPVSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 237 ~~~~v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
..+|++|++++|.++|++.|+++|.+
T Consensus 283 ~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (320)
T cd02653 283 KGANAEILTKVDSQDFMALFIERVLA 308 (320)
T ss_pred CCCCcEEeeccCHHHHHHHHHHHHHH
Confidence 45789999999999999999998864
No 6
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=2.8e-62 Score=440.37 Aligned_cols=253 Identities=31% Similarity=0.494 Sum_probs=230.3
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++||.|||||+|++.||.++. .....+||.+|||+..+|.+...+.+.+|+++|+++++++|++|+||++|||||||+|
T Consensus 55 ~~g~~diPV~~Ga~~pl~~~~-~~~~~~hG~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~~itiva~GPLTNlA~a 133 (311)
T PRK10443 55 LLNRTDIPVAGGAVKPLMREL-IIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTLVSTGPQTNVALL 133 (311)
T ss_pred HhCCCCCcEEeCCCCCCCCCC-cCccccCCCCCCCCCCCCCCccCCCCccHHHHHHHHHHhCCCCeEEEEccchHHHHHH
Confidence 478999999999999998853 4567899999999988877666667789999999999999999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChh
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY 160 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~ 160 (263)
++++|++.++|++||+|||++. .||++|.+|||||+|||||++||+|++|++++|+|+|+++.++.+++++|.+.+++.
T Consensus 134 l~~~P~~~~~i~~iviMGG~~~-~Gn~~~~aEfN~~~DPeAA~~Vl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~~~~~ 212 (311)
T PRK10443 134 LASHPELHSKIARIVIMGGAMG-LGNWTPAAEFNIYVDPEAAEIVFQSGIPIVMAGLDVTHKAQIMDEDIERIRAIGNPV 212 (311)
T ss_pred HHHCchhhhhhCEEEEccCCCC-CCCCCcchhhccCcCHHHHHHHHhCCCCEEEecccccceeecCHHHHHHHHhcCChH
Confidence 9999999999999999999986 599999999999999999999999999999999999999999999999999888999
Q ss_pred hHHHHHHHHHHHHhhhh-cCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCCcccccCCCCCCC
Q 024725 161 VQLLGDMCKFYRDWHVK-SDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGY 238 (263)
Q Consensus 161 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~~~~~ 238 (263)
++++.+++++|..++.+ .++..++++||++|++++++|++|++++.+|+||++| .+||+|++|.... ....
T Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~~g~~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~~~~~~-------~~~~ 285 (311)
T PRK10443 213 ATIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGEYTQGMTVVDYYQL-------TGNK 285 (311)
T ss_pred HHHHHHHHHHHHHHhHhhhCCCCCCCCCCHHHhHHhcCcceEEEEEeCEEEEcCCCCCCceEEEecccc-------CCCC
Confidence 99999999999887764 5677889999999999999999999999999999997 7999999985421 1235
Q ss_pred CCcEEEeecCHHHHHHHHHHHHhc
Q 024725 239 SPVSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 239 ~~v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
+|++|++++|.++|+++|+++|.+
T Consensus 286 ~n~~v~~~vd~~~f~~~l~~~l~~ 309 (311)
T PRK10443 286 PNATVLVDVDRQGFVDLLAERLKF 309 (311)
T ss_pred CCCEEEeecCHHHHHHHHHHHHHh
Confidence 689999999999999999999864
No 7
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=8.8e-62 Score=436.62 Aligned_cols=252 Identities=48% Similarity=0.818 Sum_probs=225.2
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++||.+||||+|+++|+.........++||.||||+..+|.+...+.+++|+++|+++++++|++||||++|||||||+|
T Consensus 52 ~~g~~diPV~~G~~~pl~~~~~~~~~~~hg~dGlg~~~~p~~~~~~~~~~A~~~l~~~~~~~~~~vtivaiGPLTNlA~a 131 (304)
T cd02650 52 LFGRPDVPVAEGAAKPLTRPPFRIATFVHGDNGLGDVELPAPPRQPEDESAADFLIELANEYPGELTLVAVGPLTNLALA 131 (304)
T ss_pred HhCCCCCCEEcCCCCCCCCCCcCCcCCCCCCCCCCCCCCCCCCCCcCccCHHHHHHHHHHhCCCCeEEEECCcHHHHHHH
Confidence 47899999999999999886433678999999999999887766667889999999999999999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChh
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY 160 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~ 160 (263)
++++|++.++||+||+|||++...||++|.+||||++||+||++||+|+++++++|||+|+++.++.++++++.+.+++.
T Consensus 132 l~~~P~i~~~ik~iviMGG~~~~~GN~~p~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~ 211 (304)
T cd02650 132 LARDPDFAKLVKQVVVMGGAFTVPGNVTPAAEANIHGDPEAADIVFTAGADLTMVGLDVTTQTLLTREDLDELRDSGGKA 211 (304)
T ss_pred HHHCcHHHhhcCEEEEeCccccCCCCCCchHHhhcccCHHHHHHHHhCCCCeEEeCCceeeeEecCHHHHHHHHhcCChH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999878889
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCCcccccCCCCCCCCC
Q 024725 161 VQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSP 240 (263)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g~~~G~~~~d~~~~~~~~~~~~~~~~~ 240 (263)
++|+.+++++|..++.+.++..++++||++|++++++|++|++++.++.|+++|.+||+|++|..+..| |...+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~g~~l~D~la~~~~~~P~~~~~~~~~v~Ve~~g~~~G~tv~d~~~~~~-----~~~~~~ 286 (304)
T cd02650 212 GQFLADMLDYYIDFYQESPGLRGCALHDPLAVAAAVDPSLFTTREGVVRVETEGPTRGRTIGDRDGRRF-----WDSSPN 286 (304)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccCCcHHHHHhhcCccceEEEEeeEEEEeCCCCCceEEEecccccc-----ccCCCC
Confidence 999999999999887766667789999999999999999999999999999999999999999754332 123446
Q ss_pred cEEEeecCH-HHHHHHHH
Q 024725 241 VSVAWTVNV-DKVLNYIK 257 (263)
Q Consensus 241 v~v~~~vd~-~~f~~~l~ 257 (263)
.++...+|. ++|+++|+
T Consensus 287 ~~~~~~~d~~~~f~~~~~ 304 (304)
T cd02650 287 ATVAVDVDVDERFLKRLM 304 (304)
T ss_pred ceEEEEEChhHHHHHHhC
Confidence 444444444 99998863
No 8
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=1.8e-61 Score=434.19 Aligned_cols=247 Identities=34% Similarity=0.491 Sum_probs=223.1
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++| .|||||+|+++||.++. ..+..+||.||||+..+|.+...+.+++|+++|+++++++|++|+||++|||||||+|
T Consensus 55 ~~g-~dIPV~~Ga~~pl~~~~-~~~~~~hG~~Gl~~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itila~GPLTNlA~a 132 (304)
T PRK10768 55 FFN-SDVPVAQGAAKPLVRPL-RDAASVHGESGMEGYDFPEHTRKPLSIPAVEAMRDALMNAPEPVTLVAIGPLTNIALL 132 (304)
T ss_pred HhC-CCCeEEeCCccccCCCC-CCcccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhCCCCEEEEECCcHHHHHHH
Confidence 367 78999999999998854 4567899999999998887766666789999999999999999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChh
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY 160 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~ 160 (263)
++++|++.++|++||+|||++. .||++|.+|||||+|||||++||+|++|++++|||+|+++.+++++++++.+. ++.
T Consensus 133 l~~~P~i~~~i~~iviMGG~~~-~GN~t~~aEfN~~~DPeAA~iVl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~-~~~ 210 (304)
T PRK10768 133 LSTYPEVKPYIKRIVLMGGSAG-RGNVTPNAEFNIAVDPEAAAIVFRSGIPIVMCGLDVTNQALLTPDYLATLPEL-NRT 210 (304)
T ss_pred HHHChhhHhhcCEEEEecCCcC-cCCCCccchhccCCCHHHHHHHHhCCCCeEEeccccceeeecCHHHHHHHHhc-ChH
Confidence 9999999999999999999985 69999999999999999999999999999999999999999999999999874 788
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCCcccccCCCCCCCC
Q 024725 161 VQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYS 239 (263)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~~~~~~ 239 (263)
++|+.+++++|+.++. ..++++||++|++++++|++|++++.+|+||++| .+||+|++|.... +...+
T Consensus 211 ~~~~~~~~~~~~~~~~----~~g~~~hD~la~a~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~d~~~~-------~~~~~ 279 (304)
T PRK10768 211 GKMLHALFSHYRSGSM----QTGLRMHDVCAIAYLLRPELFTLKPCFVDVETQGEFTAGATVVDIDGR-------LGKPA 279 (304)
T ss_pred HHHHHHHHHHHHhhcc----cCCCCcCcHHHhhheeCcccEEEEEecEEEEeCCCCCCceEEEecccc-------CCCCC
Confidence 9999999998876553 2578999999999999999999999999999998 5999999996432 12357
Q ss_pred CcEEEeecCHHHHHHHHHHHHhc
Q 024725 240 PVSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 240 ~v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
|++|+.++|.++|+++|+++|.+
T Consensus 280 ~~~v~~~vd~~~f~~~~~~~l~~ 302 (304)
T PRK10768 280 NAQVALDIDVDGFQKWFAEVLAL 302 (304)
T ss_pred CcEEEeecCHHHHHHHHHHHHHh
Confidence 89999999999999999998864
No 9
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=3.1e-61 Score=432.35 Aligned_cols=247 Identities=29% Similarity=0.424 Sum_probs=223.4
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC--CCCCCccHHHHHHHHHHcCCCceEEEEecchHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPK--AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLA 78 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~--~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA 78 (263)
++||.|||||+|+.+||.++. .....+||.||||+..+|.+. ..+.+.+|+++|+++++++|++||||++|||||||
T Consensus 53 ~~g~~diPV~~Ga~~pl~~~~-~~~~~~hG~~Glg~~~~p~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA 131 (306)
T cd02649 53 ACGRRDIPVYRGASKPLLGPG-PTAAYFHGKDGFGDVGFPEPKDELELQKEHAVDAIIRLVREYPGEITLVALGPLTNLA 131 (306)
T ss_pred HhCCCCCCEecCCCccCCCCC-CCccccCCCCCCCCCCCCCCcccCCcCCCCHHHHHHHHHHhCCCCeEEEecccHHHHH
Confidence 378999999999999999864 356789999999999887665 55667899999999999999999999999999999
Q ss_pred HHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhc-CCcEEEEcCcccc-ccccCHHHHHHHHhc
Q 024725 79 LAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS-GANIAVVGINITT-QVKLTDADFLELRQS 156 (263)
Q Consensus 79 ~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s-~~~i~lvpldvt~-~~~~~~~~~~~l~~~ 156 (263)
+|++++|++.++|++||+|||++...||++|.+|||||+|||||++||+| +++++|+|||+|+ ++.++.++++++.+.
T Consensus 132 ~al~~~p~~~~~i~~iviMGG~~~~~GN~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~~~l~~~ 211 (306)
T cd02649 132 LAYRLDPSLPQKIKRLYIMGGNREGVGNTTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFEDKWANR 211 (306)
T ss_pred HHHHHChHHHHhcCeEEEeCCCccCCCCCCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHHHHHHhc
Confidence 99999999999999999999999888999999999999999999999999 9999999999999 999999999999874
Q ss_pred CChhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEe-eeEEEEecC-CcceeEEEecCCcccccCCC
Q 024725 157 KGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKK-GVVRVETQG-ICMGHTLMDQGLKRWNVSNP 234 (263)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~-~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~ 234 (263)
++.++++.+++++|..++.+..+..++++||++|++++++|++|++++ .+|+|+++| .+||+|++|+...
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~g~~~~G~tv~d~~~~------- 283 (306)
T cd02649 212 -LEKALFAESLNRREYAFASEGLGGDGWVPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVVDWLGT------- 283 (306)
T ss_pred -ChHHHHHHHHHHHHHHHHHhhcCCCCCCCCcHHHHHHHcCHhHEEEEEeeeEEEEECCCCCcceEEEecccc-------
Confidence 588999999999998887766677899999999999999999999876 569999997 6999999996432
Q ss_pred CCCCCCcEEEeecCHHHHHHHH
Q 024725 235 WTGYSPVSVAWTVNVDKVLNYI 256 (263)
Q Consensus 235 ~~~~~~v~v~~~vd~~~f~~~l 256 (263)
+...+|++|+.+||.++|+++|
T Consensus 284 ~~~~~n~~v~~~vD~~~f~~~~ 305 (306)
T cd02649 284 LKKKPNARVITKIDREKFKELL 305 (306)
T ss_pred CCCCCCCEEehhcCHHHHHHHh
Confidence 1245799999999999999976
No 10
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=1.4e-58 Score=417.48 Aligned_cols=247 Identities=28% Similarity=0.330 Sum_probs=212.2
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCC--CCCCccCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHcCCCceEEEE
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPR--VAEFAHGSDGMGNISLTPPK--------AKKCDKNASEFLVDKVSEYPGEVSILA 70 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~--~~~~~hG~dGlg~~~~p~~~--------~~~~~~~A~~~l~e~~~~~p~~vtiva 70 (263)
++||.|||||+|+++||.+.... .....||.+|+++..+|.+. ..+..++|+++|++++++||++||||+
T Consensus 56 ~~g~~dIPV~~Ga~~pl~~~~~~~~~~~~~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~itiva 135 (318)
T cd02654 56 LAGADAIPVYAGANTPLGRTNRAFHAWESLYGAYLWQGAWSPEYSDMYTNASIIRNASIPAALFMIEMVRKHPHEVSIVA 135 (318)
T ss_pred HhCCCCCCEEECCCccccCCccccccccccCCCcccCCCCCCCccccccccccCCCCCccHHHHHHHHHHhCCCceEEEE
Confidence 47999999999999999886321 12578999999988777554 344568999999999999999999999
Q ss_pred ecchHHHHHHHHhCcchhhccCcEEEeccccCCCC-CCC-c-cccccccCCHHHHHHHHhcCCcEEEEcCccccccccCH
Q 024725 71 LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALG-NVN-P-AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTD 147 (263)
Q Consensus 71 iGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~G-n~~-~-~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~ 147 (263)
+|||||||+|++++|++.++|++||+|||++...| |.+ + .+|||||+|||||++||+|++|++|+|||+|+++.+++
T Consensus 136 ~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~g~~~~~~~~aEfN~~~DPeAA~iVl~s~~~~~~v~ldvT~~~~~~~ 215 (318)
T cd02654 136 AGPLTNLALALRIDPDFAPLAKELVIMGGYLDDIGEFVNRHYASDFNLIMDPEAASIVLTAPWKSITIPGNVTNRTCLTP 215 (318)
T ss_pred CCcHHHHHHHHHHChhHHHhCCEEEEeCCCccCCCCcCCCCCCcceeeccCHHHHHHHHhCCCCEEEeCcccccceeCCH
Confidence 99999999999999999999999999999986555 666 3 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHhhhhcCCC-CcccCchHHHHHHHhcCCceeeEee-eEEEEecCCcceeEEEecC
Q 024725 148 ADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGV-HGIFLHDPVSFVALVRPDLFTFKKG-VVRVETQGICMGHTLMDQG 225 (263)
Q Consensus 148 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~D~la~a~~~~P~~~~~~~~-~v~V~~~g~~~G~~~~d~~ 225 (263)
++++.+ ++.++++.+++++|.+++.+.++. .++++||++|++++++|++|++++. +|+|++++.+||+|+.|+.
T Consensus 216 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~~~~~G~tv~d~~ 291 (318)
T cd02654 216 EQIKAD----DPLRDFIRETLDLPIDYAKEFVGTGDGLPMWDELASAVALDPELATSSETFYIDVQTDSDGGGQLIWPED 291 (318)
T ss_pred HHHhcc----CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHcCHhHccceEeEEEEEEeCCCcCCeEEeecc
Confidence 988754 567899999999998887655543 6899999999999999999998877 9999998779999999964
Q ss_pred CcccccCCCCC-CCCCcEEEeecCHHHHHHHH
Q 024725 226 LKRWNVSNPWT-GYSPVSVAWTVNVDKVLNYI 256 (263)
Q Consensus 226 ~~~~~~~~~~~-~~~~v~v~~~vd~~~f~~~l 256 (263)
...+ .. ..+|++|+.+||.++|+++|
T Consensus 292 ~~~~-----~~~~~~n~~v~~~vD~~~f~~~~ 318 (318)
T cd02654 292 LLLA-----KGLRPYHVKVITAVDVAAFLNLI 318 (318)
T ss_pred cCCC-----CCCCCCCCEEeecccHHHHHhhC
Confidence 3210 01 24689999999999999864
No 11
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=1e-57 Score=413.00 Aligned_cols=249 Identities=24% Similarity=0.292 Sum_probs=210.5
Q ss_pred CCCCC-CCeEeeCCCCCCCCCCCCCCCC---ccCCCCCCCCCCCCCCC-----CCCC--ccHHHHHHHHHHcCCCceEEE
Q 024725 1 MAGCP-GVPVAEGSPEPLKGGKPRVAEF---AHGSDGMGNISLTPPKA-----KKCD--KNASEFLVDKVSEYPGEVSIL 69 (263)
Q Consensus 1 ~~gr~-dIPV~~G~~~pl~~~~~~~~~~---~hG~dGlg~~~~p~~~~-----~~~~--~~A~~~l~e~~~~~p~~vtiv 69 (263)
++||. ||||++|+..|+.+.......+ .||.+|||+..+|.+.. ++.+ .+|+++|++++++||++||||
T Consensus 56 ~~g~~~dvPv~~ga~~~~~~~~~~~~~~~~g~~G~~glg~~~~p~~~~~~~~~~~~~~~~~a~~~i~~~i~~~p~eItiv 135 (326)
T PTZ00313 56 MMHAREATPLFPIGKSSFKGVNPFPSEWRWSAKNMDDLPCLNIPEHVAIWEKLKPENEALVGEELLADLVMSSPEKVTIC 135 (326)
T ss_pred HhCCCCCCCeeeecCCcccCCCCCcchheecccCCCCCCCCCCCCccccccccCCccccchHHHHHHHHHHhCCCCEEEE
Confidence 47987 8999999999987732222333 37888999888876542 2333 359999999999999999999
Q ss_pred EecchHHHHHHHHhCc-chhhccCcEEEeccccCCCCCC-----CccccccccCCHHHHHHHHhcC-CcEEEEcCccccc
Q 024725 70 ALGPLTNLALAIKRDS-SFASKVKNIVVLGGAFFALGNV-----NPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQ 142 (263)
Q Consensus 70 aiGPlTNlA~al~~~P-~~~~~i~~i~iMGG~~~~~Gn~-----~~~aE~N~~~DpeAA~~Vl~s~-~~i~lvpldvt~~ 142 (263)
++|||||||+|++++| ++.++|++||+|||++..+||+ +|.+|||||+|||||++||+|+ ++++|+|||+|++
T Consensus 136 a~GPLTNlAlal~~~pp~~~~~ik~iviMGG~~~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~ 215 (326)
T PTZ00313 136 VTGPLSNVAWCIEKYGEEFTKKVEECVIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNS 215 (326)
T ss_pred ECCcHHHHHHHHHhCCHHHHHhcCEEEEeCCcccCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccc
Confidence 9999999999999996 9999999999999999888998 7999999999999999999996 9999999999999
Q ss_pred cccCHHHHHHHHhcCC-hhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeE
Q 024725 143 VKLTDADFLELRQSKG-RYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHT 220 (263)
Q Consensus 143 ~~~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g-~~~G~~ 220 (263)
+.++.+++++|.+.++ +.++|+.++...+.. +....+..++++||++|++++++|++|++++.+|+|++++ .+||+|
T Consensus 216 ~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~hD~lA~a~~~~Pel~~~~~~~v~Ve~~~~~t~G~t 294 (326)
T PTZ00313 216 VPVTSEVVKKFGAQNKYLLSQFVGSTWAMCTH-HELLRPGDGYYAWDVLTAAYVIERNLAELEPVPLEVVVEKAKNEGRT 294 (326)
T ss_pred eeCCHHHHHHHHhcCcchHHHHHHHHHhhhhh-hhhhcCCCCCcCcHHHHHHHhcChheEEEEEEEEEEEeCCCCCCceE
Confidence 9999999999987655 578888886654322 1111123689999999999999999999999999999985 899999
Q ss_pred EEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHh
Q 024725 221 LMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLM 261 (263)
Q Consensus 221 ~~d~~~~~~~~~~~~~~~~~v~v~~~vd~~~f~~~l~~~l~ 261 (263)
+.+.. +.++++|+.++|.++|+++|+++|.
T Consensus 295 v~~~~-----------~~~~~~V~~~vd~~~f~~~~~~~l~ 324 (326)
T PTZ00313 295 RRAAE-----------GAACTYVAKNTNAELFYDMVLDSAR 324 (326)
T ss_pred EeCCC-----------CCCceEEEecCCHHHHHHHHHHHHh
Confidence 98642 2357999999999999999999875
No 12
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=2e-57 Score=406.68 Aligned_cols=245 Identities=36% Similarity=0.612 Sum_probs=216.6
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++|+.+||||+|++.|+.++........||.+|.+. .+.+.....+++|+++|+|+++++|++|+||++|||||||+|
T Consensus 51 ~~g~~~iPV~~G~~~pl~~~~~~~~~~~~g~~g~~~--~~~~~~~~~~~~a~~~i~~~~~~~~~~v~ila~GplTNlA~a 128 (295)
T cd00455 51 LLGRLDIPVYAGATRPLTGEIPAAYPEIHGEGGLGL--PIPPIIEADDPEAVQLLIDLIRKYPDEITIVALGPLTNLAMA 128 (295)
T ss_pred HhCCCCCCEeCCCCCCCCCCCCCCCcccCCCCCCCC--CCCCCCcCCCcCHHHHHHHHHHhcCCCeEEEECCchHHHHHH
Confidence 368999999999999998864334455788888432 222233345689999999999999999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChh
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRY 160 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~ 160 (263)
++++|++.++|++||+|||++..+||++|.+||||++||+||++||+++++++|+|+|+|+++.+++++++++.+..++.
T Consensus 129 l~~~p~~~~~i~~iviMGG~~~~~Gn~~~~aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~ 208 (295)
T cd00455 129 FILDPDIKDRVKEIVIMGGAFLVPGNVTPVAEANFYGDPEAANIVFNSAKNLTIVPLDVTNQAVLTPPMVERIFEQGTSI 208 (295)
T ss_pred HHHChHHHHhCCEEEEcCCccCCCCCCCccchhhcccCHHHHHHHHhCCCCeEEecccceeeEeCCHHHHHHHHHhCCcH
Confidence 99999999999999999999977899999999999999999999999999999999999999999999999998877899
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCCcccccCCCCCCCCC
Q 024725 161 VQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSP 240 (263)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~V~~~g~~~G~~~~d~~~~~~~~~~~~~~~~~ 240 (263)
++++.+++++|..++.+ ++..++++||++|++++++|++|++++.+++|+++|.+||+|++|.... ...+|
T Consensus 209 ~~~~~~~~~~~~~~~~~-~~~~~~~~~D~lAv~~~~~P~~~~~~~~~v~V~~~g~~~G~t~~d~~~~--------~~~~~ 279 (295)
T cd00455 209 GLLIKPMIDYYYKAYQK-PGIEGSPIHDPLAVAYLLNPSMFDYSKVPVDVDTDGLTRGQTIADFREN--------PGNGV 279 (295)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcCCCChHHHHHHhcCcccEEEEEEeEEEEeCCCCCceEEEecccC--------CCCCC
Confidence 99999999999887766 6667899999999999999999999999999999999999999996432 12469
Q ss_pred cEEEeecCHHHHHHHH
Q 024725 241 VSVAWTVNVDKVLNYI 256 (263)
Q Consensus 241 v~v~~~vd~~~f~~~l 256 (263)
++|+.++|.++|+++|
T Consensus 280 ~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 280 TRVAVNLDYPDFIELI 295 (295)
T ss_pred cEEEEecCHHHHHhhC
Confidence 9999999999999864
No 13
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=1.2e-57 Score=411.15 Aligned_cols=250 Identities=42% Similarity=0.689 Sum_probs=210.8
Q ss_pred CC-CCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC--CCCccHHHHHHHHHHcCCCceEEEEecchHHHH
Q 024725 2 AG-CPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAK--KCDKNASEFLVDKVSEYPGEVSILALGPLTNLA 78 (263)
Q Consensus 2 ~g-r~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~--~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA 78 (263)
+| |++||||.|+.+|+.++ .....++||.+|||+..+|.+... ..+.+|+++|+++++++|++|+||++|||||||
T Consensus 55 ~g~~~~iPV~~G~~~pl~~~-~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GplTNlA 133 (312)
T PF01156_consen 55 AGGRDDIPVYKGADRPLVRP-PEYAPEIHGEDGLGDASLPEPEDEPYPSDEDAVDFIIELLKAYPGEVTIVAIGPLTNLA 133 (312)
T ss_dssp TTTCSTS-EEEEESS-SSSS-HHHHHHHHTTTSSTSS-HHSSSCHCHBHSSBHHHHHHHHHHHSSSTEEEEECS-SHHHH
T ss_pred hcCCCccceeecchhhhhcc-ccchhhcccccCCCcccCcccccccccccccHHHHHHHHHHhcCCcEEEEecCcchhHH
Confidence 54 77899999999999864 355678999999999776654433 357899999999999999999999999999999
Q ss_pred HHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHh-cC
Q 024725 79 LAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQ-SK 157 (263)
Q Consensus 79 ~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~-~~ 157 (263)
+|++++|++.++|++||+|||++...||.+|.+||||++||+||++||++++|++++|+|+|+++.++.++++++.+ .+
T Consensus 134 ~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~ 213 (312)
T PF01156_consen 134 LALRRDPEIAKKIKRIVIMGGAFDGPGNVTPVAEFNFYCDPEAAQIVLESGIPITLVPLDVTHQVLLTPEFLDRLRAQSG 213 (312)
T ss_dssp HHHHHHGGHHGGEEEEEEE---SSS--SSSSSC-HHHHHSHHHHHHHHCSSS-EEEE-HHHHTTSEEEHHHHHHHHHTCT
T ss_pred HHHHhChHHHhhceEEEEECCccccCCCCCccCCcCcccCHHHHHHHhhcCCCeEEEecCccccccCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 57
Q ss_pred ChhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHH-hcCCcee-eEeeeEEEEecC-CcceeEEEecCCcccccCCC
Q 024725 158 GRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVAL-VRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNP 234 (263)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~-~~P~~~~-~~~~~v~V~~~g-~~~G~~~~d~~~~~~~~~~~ 234 (263)
+++++++.+++++|..++.+. ..++++||++|++++ ++|++|. +++.+++|+++| .+||+++.|+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~la~~~~~~~P~~~~~~~~~~v~V~~~~~~~~G~t~~d~~~-------- 283 (312)
T PF01156_consen 214 SPLARFLRDLLRFYFDFYRDG--SDGFPLHDPLAAAYAELDPELFTEFERGPVDVETDGGLTRGQTVVDREG-------- 283 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--SSSEE-HHHHHHHHH-H-GGGEEEEEEEEEEEESSSSTTTTEEEEETTS--------
T ss_pred chHHHHHHHHHHHHHhhhhhc--cCCcccCCHHHHHHHHhCCccceecceEEEEEEECCCCCCceEEEeccc--------
Confidence 899999999999988877533 468999999999999 9999976 899999999997 999999998621
Q ss_pred CCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 024725 235 WTGYSPVSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 235 ~~~~~~v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
+..+++++|+++||.++|+++|+++|.+
T Consensus 284 ~~~~~~~~v~~~vd~~~f~~~~~~~l~~ 311 (312)
T PF01156_consen 284 SSGGPNVRVATDVDVDAFFDLLLERLAR 311 (312)
T ss_dssp TTSSECEEEEEEE-HHHHHHHHHHHHHH
T ss_pred cCCCCcEEEeeecCHHHHHHHHHHHHhc
Confidence 2467899999999999999999999875
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=2.9e-55 Score=394.28 Aligned_cols=238 Identities=24% Similarity=0.345 Sum_probs=204.7
Q ss_pred CCCC-CCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCC----CCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchH
Q 024725 1 MAGC-PGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISL----TPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLT 75 (263)
Q Consensus 1 ~~gr-~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~----p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlT 75 (263)
++|| .|||||+|+++||... ......|+.+|++.... |.+..+....+|+++|+|+++++|++||||++||||
T Consensus 55 ~~g~~~dIPV~~Ga~~pL~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLT 132 (312)
T cd02647 55 RLGQRDAIPVGKGGSRAVNPF--PRSWRRDAAFSVDHLPILNERYTVETPLAEETAQLVLIEKIKASLEPVTLLVTGPLT 132 (312)
T ss_pred HhCCCCCCCEEeCCCcCcccC--ccccccccccCcCcCCCCccccCCCCCcCcchHHHHHHHHHHhCCCCEEEEEcccHH
Confidence 4788 8999999999999442 22334566676654321 112223346789999999999999999999999999
Q ss_pred HHHHHHHhCcchhhccCcEEEeccccCCCCCC-----CccccccccCCHHHHHHHHhcCCcEEEEcCccccccccCHH--
Q 024725 76 NLALAIKRDSSFASKVKNIVVLGGAFFALGNV-----NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDA-- 148 (263)
Q Consensus 76 NlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~-----~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~-- 148 (263)
|||+|++++|++.++|++||+|||++...||+ +|.+|||||+|||||++||+|++|++|+|||+|+++.++.+
T Consensus 133 NlA~al~~~P~~~~~i~~iviMGG~~~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vpldvt~~~~~~~~~~ 212 (312)
T cd02647 133 NLARALDSDPDISSNIEEVYIMGGGVDAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLDATNTVPLTREFL 212 (312)
T ss_pred HHHHHHHHChHHHhhcCEEEEeCCccCCCCccccCCCCCCcccccccCHHHHHHHHhCCCCEEEEccccccccccCHHHH
Confidence 99999999999999999999999999989998 99999999999999999999999999999999999999999
Q ss_pred --HHHHHHhcCChhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeEeee-EEEEecCCcceeEEEecC
Q 024725 149 --DFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGV-VRVETQGICMGHTLMDQG 225 (263)
Q Consensus 149 --~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~-v~V~~~g~~~G~~~~d~~ 225 (263)
+++++.+.+++.++++.+++++|..++ +..++++||++|++++++|+++++++.+ ++|+++|.+||+|++|..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~hD~lava~~~~p~~~~~~~~~~v~Ve~~g~t~G~Tv~d~~ 288 (312)
T cd02647 213 ETDRQRFAAQRLPASDLAGQGYALVKPLE----FNSTYYMWDVLTTLVLGAKEVDNTKESLILEVDTDGLSAGQTVTSPN 288 (312)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhc----CCCCccccHHHHHHHHcCchhcccccccceEEEECCCCCceEEEcCC
Confidence 666777767899999999999988765 5678999999999999999999998888 999999989999999953
Q ss_pred CcccccCCCCCCCCCcEEEeecCHHHHHHHH
Q 024725 226 LKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 256 (263)
Q Consensus 226 ~~~~~~~~~~~~~~~v~v~~~vd~~~f~~~l 256 (263)
++|++|++++|.+...+.|
T Consensus 289 ------------~~n~~v~~~vd~~~~~~~~ 307 (312)
T cd02647 289 ------------GRPLTLVTSNNSYGSNRFF 307 (312)
T ss_pred ------------CCCeEEEEeeCcccchhhh
Confidence 3689999999998744433
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=3e-53 Score=383.27 Aligned_cols=219 Identities=32% Similarity=0.431 Sum_probs=188.6
Q ss_pred CCe-EeeCCCCCCCCCCCCCCCCccCCCCCCCCCC--CCC----C--------CCCCCccHHHHHHHHHHcCCC-ceEEE
Q 024725 6 GVP-VAEGSPEPLKGGKPRVAEFAHGSDGMGNISL--TPP----K--------AKKCDKNASEFLVDKVSEYPG-EVSIL 69 (263)
Q Consensus 6 dIP-V~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~--p~~----~--------~~~~~~~A~~~l~e~~~~~p~-~vtiv 69 (263)
+|| ||+|+++||.++. ..+.++||.||||+..+ |.. . ..+.+++|+++|+++++++|+ +|+||
T Consensus 78 ~iP~V~~Ga~~PL~~~~-~~a~~~HG~dGlgg~~~~~p~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~~itiv 156 (367)
T cd02648 78 EKPIVASGSDQPLEGER-LTASYFHGRDGLSGVHWLHPDFTPVETWIPEIVAPLTPSDKPAYDVILDILREEPDHTVTIA 156 (367)
T ss_pred CCCEEEcCCCcccCCCC-cccCccCCCCCCCCccccCCccccccccccccccccCcCCccHHHHHHHHHHhCCCCcEEEE
Confidence 699 9999999998853 56778999999999864 211 1 234568999999999999995 69999
Q ss_pred EecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhc----------CCcEEEEcCcc
Q 024725 70 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS----------GANIAVVGINI 139 (263)
Q Consensus 70 aiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s----------~~~i~lvpldv 139 (263)
++|||||||+|++++|++.++|++||+|||++...||.+|.+|||||+||+||++||++ +++++|+|||+
T Consensus 157 alGPLTNiA~al~~~P~~~~~Ik~IviMGG~~~~~GN~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDv 236 (367)
T cd02648 157 ALGPLTNLAAAARKDPETFAKVGEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDI 236 (367)
T ss_pred EcccHHHHHHHHHHChHHHhhhcEEEEeCCcccCCCCCCccchhhcccCHHHHHHHHhccccccccccCCCCeEEEeecC
Confidence 99999999999999999999999999999999888999999999999999999999984 45899999999
Q ss_pred ccccccCHHHH-----HHHHh--cCChhhHHHHHH-----HHHHHHhhhhcCCCCcc---cCchHHHHHHHhcCC-----
Q 024725 140 TTQVKLTDADF-----LELRQ--SKGRYVQLLGDM-----CKFYRDWHVKSDGVHGI---FLHDPVSFVALVRPD----- 199 (263)
Q Consensus 140 t~~~~~~~~~~-----~~l~~--~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~---~~~D~la~a~~~~P~----- 199 (263)
|+++.++.+++ +.+.. .++++++|+.++ +++|++++.+.++..++ .+||++|++++++|+
T Consensus 237 T~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lHD~lava~~i~p~~~~~~ 316 (367)
T cd02648 237 TTGHTLPYSSLFATYVTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRSELFEMHDPLAVWYAIFADMPATG 316 (367)
T ss_pred CCCeeeCHHHhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcHHHhHhhcCccccccc
Confidence 99999998774 44455 568899965544 44888777666555555 899999999999999
Q ss_pred -----ceeeEeeeEEEEecC-CcceeEEEecC
Q 024725 200 -----LFTFKKGVVRVETQG-ICMGHTLMDQG 225 (263)
Q Consensus 200 -----~~~~~~~~v~V~~~g-~~~G~~~~d~~ 225 (263)
+|++++.+|+||+.| .|||+|++|++
T Consensus 317 ~~~~~~~~~~~~~v~Ve~~g~~trG~tV~D~~ 348 (367)
T cd02648 317 SIDGNGWKHTPRDFRVETSGQWTRGMCVVDRR 348 (367)
T ss_pred ccccceEEEEEecEEEEeCCCCCCceEEEecC
Confidence 889999999999997 89999999964
No 16
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-42 Score=309.88 Aligned_cols=254 Identities=33% Similarity=0.412 Sum_probs=208.7
Q ss_pred CCCCCCCeEeeCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCceEEEEecchHHHHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALA 80 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~~~~~~~hG~dGlg~~~~p~~~~~~~~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~a 80 (263)
++||.|||||+|+..||.+.+...+.++||.||+||..+|.+......++++.++++...++|++||+|++|||||+|++
T Consensus 74 l~~r~dIPV~~Ga~kpl~~~~~~~a~~~hG~dGl~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~It~va~GPLTNlAla 153 (350)
T KOG2938|consen 74 LLGRLDIPVYEGAAKPLIRSPNDWANAFHGIDGLGDILLPPPRDDINVGHGAEFAIEQDIAYPGEITIVAYGPLTNLALA 153 (350)
T ss_pred hcCCcCCCchhcccccccCCccchhhhhccccccCCcccCCccccccccccHHHHHHHhhcCCCCceEEEeccchHHHHH
Confidence 47899999999999999998767899999999999988877666667789999999998899999999999999999999
Q ss_pred HHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcC-CcEEEEcCccccccccCHHHHHHHHh---c
Q 024725 81 IKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQ---S 156 (263)
Q Consensus 81 l~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~-~~i~lvpldvt~~~~~~~~~~~~l~~---~ 156 (263)
++++|++.+++++++||||++++.||+++.|||||+.|||||++||++. .+++++|+++|++..++....-.+.. .
T Consensus 154 ~~~~pd~~~~v~~ivimGG~~~~~gnv~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~ 233 (350)
T KOG2938|consen 154 LALDPDFLKNVKRIVIMGGNYYGNGNVTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNK 233 (350)
T ss_pred hhcChhHhhccccEEEeccccccccCcCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccC
Confidence 9999999999999999999999899999999999999999999999997 67899999999998888766544432 2
Q ss_pred CChhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCCceeeE--eeeEEEEecCCcceeEEEecC-CcccccCC
Q 024725 157 KGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFK--KGVVRVETQGICMGHTLMDQG-LKRWNVSN 233 (263)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~--~~~v~V~~~g~~~G~~~~d~~-~~~~~~~~ 233 (263)
.+++..++......+.. +....|...+..+|..+++.++.|+.+..+ ...+.+.+..+++|+.+++.- .+.
T Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~d~~~~a~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 307 (350)
T KOG2938|consen 234 HPILESYLSLGTARQQV-YNGAYGNIFTPYPDNIYVAFAIFPDPLAAKTVYVSVDVLLDSPTRGQMVVDHLPAKL----- 307 (350)
T ss_pred CchhHHhhhhhHHhhhc-ccccCCccCCCCCcHHHHHHHhhhhhhhhhhhhheeeeeecCcceeeeEEecchhhh-----
Confidence 34444444443333322 223456667778999999999999987654 345666677789999999842 111
Q ss_pred CCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 024725 234 PWTGYSPVSVAWTVNVDKVLNYIKRLLMK 262 (263)
Q Consensus 234 ~~~~~~~v~v~~~vd~~~f~~~l~~~l~~ 262 (263)
....++.....+|..+|++.+.+.+.+
T Consensus 308 --~~~~~v~~~~~~~~~~f~~~~~~~l~~ 334 (350)
T KOG2938|consen 308 --DYPANVTKITTVDVVKFLTLRIQVLGR 334 (350)
T ss_pred --cccccceeecccccchheehhhhhhhh
Confidence 235789999999999999988877654
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.7e-34 Score=255.11 Aligned_cols=192 Identities=27% Similarity=0.381 Sum_probs=139.7
Q ss_pred CCCCCCCeEeeCCCCCCCCCCC-CCCCCccCCCCCCCCCCCCCC-CCCCCccHHHHHHHHHHcC-CCceEEEEecchHHH
Q 024725 1 MAGCPGVPVAEGSPEPLKGGKP-RVAEFAHGSDGMGNISLTPPK-AKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNL 77 (263)
Q Consensus 1 ~~gr~dIPV~~G~~~pl~~~~~-~~~~~~hG~dGlg~~~~p~~~-~~~~~~~A~~~l~e~~~~~-p~~vtivaiGPlTNl 77 (263)
++||+||||+.| +|+..... .+..+.||.++++ .+. ......+|+++|+++++++ |++||||++||||||
T Consensus 50 ~~gr~dIPVg~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~A~~~i~~~l~~~~~~~vtivaiGplTNl 122 (293)
T cd02652 50 FYGRGDIPIGAD--YHGWPEDAKDHAKFLLEGDRLH-----HDLESAEDALDAVKALRRLLASAEDASVTIVSIGPLTNL 122 (293)
T ss_pred hcCCCCCcEeeC--CCCCCCccccccceeCCCCCCC-----CcccccccCccHHHHHHHHHHhcCCCCEEEEEcccHHHH
Confidence 368999999654 55544321 2223344444333 221 2223568999999999998 789999999999999
Q ss_pred HHHHHh------Ccch-hhccCcEEEeccccC-CCCCCCccccccccCCHHHHHHHHhc----CCcEEE--EcCcccccc
Q 024725 78 ALAIKR------DSSF-ASKVKNIVVLGGAFF-ALGNVNPAAEANIYGDPEAADVVFTS----GANIAV--VGINITTQV 143 (263)
Q Consensus 78 A~al~~------~P~~-~~~i~~i~iMGG~~~-~~Gn~~~~aE~N~~~DpeAA~~Vl~s----~~~i~l--vpldvt~~~ 143 (263)
|.+++. +|++ .++||+|++|||++. ..||++ .+||||++||+||++||++ ++|++| +++|+++++
T Consensus 123 A~ll~~~~d~l~~pel~~~kvk~lviMGG~~~~~~Gn~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~ 201 (293)
T cd02652 123 AALLDADADPLTGPELVRQKVKRLVVMGGAFYDPDGNVQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAV 201 (293)
T ss_pred HHHHHhccccccCcHHHHhhCCEEEEeCCCccCCCCCcc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccc
Confidence 999999 9999 589999999999983 569988 9999999999999999999 899988 699999888
Q ss_pred ccCHHHHHHHHhcCChhhHHHHHHHHHHHHhhhhcCCCCcccCchHHHHHHHhcCC--ceeeEe-----eeEEEEecC
Q 024725 144 KLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPD--LFTFKK-----GVVRVETQG 214 (263)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~--~~~~~~-----~~v~V~~~g 214 (263)
..+.... .....++ ...+.|..+. ...++||+++++++++|+ +|+.++ ..|.|..+|
T Consensus 202 ~~~~~~~-~~~~~~~-------p~~~~y~~~~------~~~~~wD~~t~l~av~~~~~~F~~~~~~~g~g~v~~~~~G 265 (293)
T cd02652 202 SYPHVLV-IAHPFNT-------PVFAAYWPRS------HRRPLWDPLTLLAAVRGGGMLFDLREVQLGPGRVEVDSSG 265 (293)
T ss_pred cCchhhh-hcccccc-------hHHHHHHhcc------CCccchHHHHHHHeeCCcCCccccccccCCCceEEEcCCC
Confidence 7665411 1111112 2223333221 127899999999999997 787654 456666555
No 18
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=91.98 E-value=0.24 Score=43.49 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=42.0
Q ss_pred CccHHHHHHHHHHcC-CCceEEEEecchHHHHHHHHh---------CcchhhccCcEEEecc
Q 024725 48 DKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR---------DSSFASKVKNIVVLGG 99 (263)
Q Consensus 48 ~~~A~~~l~e~~~~~-p~~vtivaiGPlTNlA~al~~---------~P~~~~~i~~i~iMGG 99 (263)
+.++.++|++.+.+. +.+|.|.+=|-...||.||.. .+++.+|+ +||..++
T Consensus 98 ~s~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~~~Kl-rvy~I~d 158 (260)
T PF07632_consen 98 DSEGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKETRSPEEAARFVSKL-RVYSISD 158 (260)
T ss_dssp --HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHHHS-HHHHHHHHHTE-EEEEES-
T ss_pred CChHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHHhcCHHHHHHHHhhE-EEEeccC
Confidence 478999999999987 688999999999999999998 78899999 6888765
No 19
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=86.54 E-value=0.44 Score=43.82 Aligned_cols=88 Identities=26% Similarity=0.299 Sum_probs=66.8
Q ss_pred CccHHHHHHHHHHcCC---CceEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCC------CCCC------Ccccc
Q 024725 48 DKNASEFLVDKVSEYP---GEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFA------LGNV------NPAAE 112 (263)
Q Consensus 48 ~~~A~~~l~e~~~~~p---~~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~------~Gn~------~~~aE 112 (263)
+.+|++-..+.. +.| .++.+...+++|+.|.....++.-...+...+++++.... .|+. ...++
T Consensus 191 DPeAA~~vl~~~-k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~a 269 (350)
T KOG2938|consen 191 DPEAAHTVLTRT-KDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYNGAYGNIFTPYPDNIYVA 269 (350)
T ss_pred ChHHHHHHHhcC-CCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcccccCCccCCCCCcHHHHH
Confidence 677887555554 333 3577889999999999999999888888899999998752 2432 34689
Q ss_pred ccccCCHHHHHHHHhcCCcEEEEc
Q 024725 113 ANIYGDPEAADVVFTSGANIAVVG 136 (263)
Q Consensus 113 ~N~~~DpeAA~~Vl~s~~~i~lvp 136 (263)
||++.||-+++.++.+....+..|
T Consensus 270 ~~i~~d~~~~~~~~~~~~~~~~~~ 293 (350)
T KOG2938|consen 270 FAIFPDPLAAKTVYVSVDVLLDSP 293 (350)
T ss_pred HHhhhhhhhhhhhhheeeeeecCc
Confidence 999999999999888754444443
No 20
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=78.05 E-value=12 Score=30.37 Aligned_cols=73 Identities=12% Similarity=0.246 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCCCceEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcC
Q 024725 50 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 129 (263)
Q Consensus 50 ~A~~~l~e~~~~~p~~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~ 129 (263)
+-...|++.+.+.+ ++|||+-. .++|..|...|++ +|+++||.+.. +...+..|.|.+.+-+-.
T Consensus 29 tT~~~la~~L~~~~-~ltVvTns--l~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~~ 92 (161)
T PF00455_consen 29 TTTLELAKYLPDKK-NLTVVTNS--LPIANELSENPNI-----EVILLGGEVNP--------KSLSFVGPIALEALRQFR 92 (161)
T ss_pred hHHHHHHHHhhcCC-ceEEEECC--HHHHHHHHhcCce-----EEEEeCCEEEc--------CCCcEECchHHHHHHhhc
Confidence 34556788877765 79998764 3577888888854 89999999873 556777888888887766
Q ss_pred CcEEEEcCc
Q 024725 130 ANIAVVGIN 138 (263)
Q Consensus 130 ~~i~lvpld 138 (263)
..+.+++.+
T Consensus 93 ~d~afi~~~ 101 (161)
T PF00455_consen 93 FDKAFIGAD 101 (161)
T ss_pred cceEEeccc
Confidence 777777754
No 21
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=74.37 E-value=15 Score=32.49 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=40.6
Q ss_pred ceEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCc
Q 024725 65 EVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGIN 138 (263)
Q Consensus 65 ~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpld 138 (263)
.+|||+... ++|..|...|++ ++++.||.+.. +.+....|.|.+.+=+-...+.+++-+
T Consensus 130 ~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~~--------~~~~~~G~~a~~~l~~~~~d~afig~~ 188 (269)
T PRK09802 130 DVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLRR--------QSQSFYGDQAEQSLQNYHFDMLFLGVD 188 (269)
T ss_pred CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEec--------CCCceECHHHHHHHHhccCCEEEEcCc
Confidence 366666542 455555555554 69999999873 567788888888886666677777654
No 22
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=70.62 E-value=22 Score=31.07 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCceEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcE
Q 024725 53 EFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANI 132 (263)
Q Consensus 53 ~~l~e~~~~~p~~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i 132 (263)
..|++.+... ++||++.+. ++|.+|...|++ ++++.||.+.. +.+.+..|. ++.+=+-...+
T Consensus 106 ~~la~~L~~~--~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~--------~~~~~~G~~-~~~l~~~~~d~ 167 (251)
T PRK13509 106 FLLGRELCGK--PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK--------SQSITLSPQ-GSENSLYAGHW 167 (251)
T ss_pred HHHHHHhCCC--CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC--------CcceeECHH-HHHHHhCcCCE
Confidence 3455555332 366666654 566666666654 68999999863 456677786 45443335677
Q ss_pred EEEcCc
Q 024725 133 AVVGIN 138 (263)
Q Consensus 133 ~lvpld 138 (263)
.+++.+
T Consensus 168 aFig~~ 173 (251)
T PRK13509 168 MFTSGK 173 (251)
T ss_pred EEECCC
Confidence 777654
No 23
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=57.09 E-value=50 Score=28.59 Aligned_cols=58 Identities=7% Similarity=0.221 Sum_probs=37.0
Q ss_pred eEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCc
Q 024725 66 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGIN 138 (263)
Q Consensus 66 vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpld 138 (263)
+|||+-.+ ++|..|...|++ ++++.||.+.. +.+....|.|.+.+=+-.....+++.+
T Consensus 117 ltVvTNs~--~ia~~l~~~~~~-----~vil~GG~~~~--------~~~~~~G~~a~~~l~~~~~d~afis~~ 174 (240)
T PRK10411 117 IQVFTNSH--PICQELGKRERI-----QLISSGGTLER--------KYGCYVNPSLISQLKSLEIDLFIFSCE 174 (240)
T ss_pred eEEEeCCH--HHHHHHhcCCCC-----EEEEECCEEeC--------CCCceECHHHHHHHHhcCCCEEEEece
Confidence 55544432 234444445553 68999998873 566777888888776656667777654
No 24
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=56.59 E-value=55 Score=28.51 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=39.1
Q ss_pred ceEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCc
Q 024725 65 EVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGIN 138 (263)
Q Consensus 65 ~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpld 138 (263)
++|||+.. .++|..|...|++ ++++.||.+.. +.+....+.|.+.+=+-...+.+++.+
T Consensus 116 ~ltvvTns--l~i~~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~~~~~l~~~~~D~afig~~ 174 (252)
T PRK10681 116 PFTAVCYS--LNTFLALQEKPHC-----RAILCGGEFHA--------SNAIFKPLDFQQTLDNICPDIAFYSAA 174 (252)
T ss_pred CeEEEECC--HHHHHHHhhCCCC-----EEEEECcEEec--------CcceeeCHHHHHHHHhhCCCEEEEeCc
Confidence 36666543 2345555555554 68999999863 446778888877776656777777753
No 25
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=54.62 E-value=57 Score=30.80 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHcCCCceEEEE---ecchHHHHHHHHhCcchhhccCcEEEeccccCCC
Q 024725 49 KNASEFLVDKVSEYPGEVSILA---LGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 104 (263)
Q Consensus 49 ~~A~~~l~e~~~~~p~~vtiva---iGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~ 104 (263)
++-++.|.+.++.-..++++++ -|.++=.|.|+..+..-..+++.++.|||-++..
T Consensus 153 dDYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 153 EDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCC
Confidence 4556788888865543355544 4777777888877766566799999999988753
No 26
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=53.02 E-value=81 Score=27.53 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHcCCCceEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcC
Q 024725 50 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 129 (263)
Q Consensus 50 ~A~~~l~e~~~~~p~~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~ 129 (263)
+-..++++.+...+. ++|++-+. |+|..+...|.. .+++.||.+.. +.+.+..|.|.+.+=+-.
T Consensus 101 TT~~~la~~L~~~~~-ltviTNsl--~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~~ 164 (253)
T COG1349 101 TTTLALARALPDDNN-LTVITNSL--NIAAALLEKPNI-----EVILLGGTVRK--------KSGSFVGPLAEEFLRQFN 164 (253)
T ss_pred cHHHHHHHHhCcCCC-eEEEeCCH--HHHHHHHhCCCC-----eEEEeCcEEEc--------CCCeEEcHHHHHHHHhCc
Confidence 334445555544432 66655543 345555555433 56889998873 566777787777776666
Q ss_pred CcEEEEcCc
Q 024725 130 ANIAVVGIN 138 (263)
Q Consensus 130 ~~i~lvpld 138 (263)
....+++.+
T Consensus 165 ~d~aFig~~ 173 (253)
T COG1349 165 FDKAFIGAD 173 (253)
T ss_pred ccEEEEecc
Confidence 778887754
No 27
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=49.13 E-value=1e+02 Score=26.81 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=37.0
Q ss_pred eEEEEecchHHHHHHHHhCcchhhccCcEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCc
Q 024725 66 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGIN 138 (263)
Q Consensus 66 vtivaiGPlTNlA~al~~~P~~~~~i~~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpld 138 (263)
+||++... ++|..|...|++ ++++.||.+.. +......|.|.+.+=+-...+.+++.+
T Consensus 116 ltVvTNsl--~ia~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~a~~~l~~~~~d~afi~~~ 173 (252)
T PRK10906 116 LRIVTNNL--NVANTLMAKEDF-----RIILAGGELRS--------RDGGIIGEATLDFISQFRLDFGILGIS 173 (252)
T ss_pred cEEEECcH--HHHHHHhhCCCC-----EEEEECCEEec--------CCCccCCHHHHHHHHhccCCEEEEcCC
Confidence 55544322 344445445553 68999999873 456677888888876656677777643
No 28
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=47.59 E-value=8.1 Score=35.55 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=18.6
Q ss_pred CceEEEEecchHHHHHHHHhCcchhhccCcEEEe
Q 024725 64 GEVSILALGPLTNLALAIKRDSSFASKVKNIVVL 97 (263)
Q Consensus 64 ~~vtivaiGPlTNlA~al~~~P~~~~~i~~i~iM 97 (263)
+.++|||+||||.=| +.++|+++.-+
T Consensus 129 dg~~vIATGPLTs~~--------La~~i~~ltG~ 154 (439)
T COG1206 129 DGITVIATGPLTSDA--------LAEKIKELTGE 154 (439)
T ss_pred CCcEEEecCCCCCHH--------HHHHHHHhhCC
Confidence 679999999999755 44556555444
No 29
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=42.45 E-value=1.3e+02 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=28.0
Q ss_pred cEEEeccccCCCCCCCccccccccCCHHHHHHHHhcCCcEEEEcCc
Q 024725 93 NIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGIN 138 (263)
Q Consensus 93 ~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpld 138 (263)
++++.||.+.. +.+....|.|.+.+=+-...+.+++.+
T Consensus 137 ~v~l~GG~~~~--------~~~~~~G~~a~~~l~~~~~D~afi~~~ 174 (256)
T PRK10434 137 TILMPGGTFRK--------KSASFHGQLAENAFEHFTFDKLFIGTD 174 (256)
T ss_pred EEEEECCEEeC--------CCCeEECHHHHHHHHhCcCCEEEEcCc
Confidence 68999999873 456778888887775555677777654
No 30
>CHL00181 cbbX CbbX; Provisional
Probab=38.50 E-value=58 Score=29.03 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=36.5
Q ss_pred CccHHHHHHHHHHcCCCceEEEEecchHHHHHHHHhCcchhhccCc
Q 024725 48 DKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKN 93 (263)
Q Consensus 48 ~~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~al~~~P~~~~~i~~ 93 (263)
..++++.|.+.+..+.+++.||+.|.-..+...+..+|.+.+++..
T Consensus 144 ~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~ 189 (287)
T CHL00181 144 GSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIAN 189 (287)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCc
Confidence 3567777777777766778899999877888888889999999854
No 31
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=33.96 E-value=2e+02 Score=25.83 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=19.2
Q ss_pred HhcCCcEEEEcCccccccccCHHHHHHHH
Q 024725 126 FTSGANIAVVGINITTQVKLTDADFLELR 154 (263)
Q Consensus 126 l~s~~~i~lvpldvt~~~~~~~~~~~~l~ 154 (263)
+++|.....+.-.......+++++++.+.
T Consensus 181 ~eaGad~i~i~d~~a~~~~isp~~f~e~~ 209 (326)
T cd03307 181 LEAGADIITIADPTASPELISPEFYEEFA 209 (326)
T ss_pred HHcCCCEEEecCCCccccccCHHHHHHHH
Confidence 34577766665555556677898887654
No 32
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=33.20 E-value=2.4e+02 Score=22.20 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhcCCcEEEEcCccccccccCHHHHHHHHhcCChhhHHHHHHH
Q 024725 117 GDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMC 168 (263)
Q Consensus 117 ~DpeAA~~Vl~s~~~i~lvpldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 168 (263)
.-|.=|+.|.+|...-.++|++-|+-..+.-+ +.|+..++.++.
T Consensus 84 iTp~mA~AI~~S~A~KiLiPl~~~~~~ivG~~--------~~pl~~li~~~v 127 (131)
T PF12953_consen 84 ITPAMAEAIAQSPAKKILIPLNRCNIEIVGVE--------NEPLPHLIDEAV 127 (131)
T ss_pred ccHHHHHHHhcCCCCEEEEeecCCCCEEECCC--------CCCHHHHHHHHH
Confidence 34788999999999999999998876554322 345666555544
No 33
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=32.24 E-value=1.9e+02 Score=24.88 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCC-ceEEEEecchHHHHHHHHhCcchhhccC-cEEEeccccCCCCCCCccccccccCCHHHHHHHHh-
Q 024725 51 ASEFLVDKVSEYPG-EVSILALGPLTNLALAIKRDSSFASKVK-NIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFT- 127 (263)
Q Consensus 51 A~~~l~e~~~~~p~-~vtivaiGPlTNlA~al~~~P~~~~~i~-~i~iMGG~~~~~Gn~~~~aE~N~~~DpeAA~~Vl~- 127 (263)
-++.+.+.....++ ++.++.+|.=.|=...=...++..+..+ .++||+|--.. .| -|.+|+-.|.
T Consensus 18 v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpa----aP--------GP~kARE~l~~ 85 (277)
T COG1927 18 VVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPA----AP--------GPKKAREILSD 85 (277)
T ss_pred HHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCC----CC--------CchHHHHHHhh
Confidence 45556555444443 5777888876666544444555666666 78888764321 11 2777877776
Q ss_pred cCCcEEEEc
Q 024725 128 SGANIAVVG 136 (263)
Q Consensus 128 s~~~i~lvp 136 (263)
|++|..+++
T Consensus 86 s~~Paiiig 94 (277)
T COG1927 86 SDVPAIIIG 94 (277)
T ss_pred cCCCEEEec
Confidence 677776665
No 34
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=31.75 E-value=2.8e+02 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCccccccccCHHHHHHHHh
Q 024725 127 TSGANIAVVGINITTQVKLTDADFLELRQ 155 (263)
Q Consensus 127 ~s~~~i~lvpldvt~~~~~~~~~~~~l~~ 155 (263)
++|..+..+.-+.. ..++++.++++..
T Consensus 188 eaGad~i~i~d~~~--~~lsp~~f~ef~~ 214 (335)
T cd00717 188 EAGAQAVQIFDSWA--GALSPEDFEEFVL 214 (335)
T ss_pred HhCCCEEEEeCccc--ccCCHHHHHHHHH
Confidence 45767665543322 3689988877653
No 35
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=30.72 E-value=77 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHcCCCceEEEEecchHHHHHHHHhCcchhhccC
Q 024725 49 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVK 92 (263)
Q Consensus 49 ~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~al~~~P~~~~~i~ 92 (263)
.++.+.+.+.+..+.+++.++.+|.-+.+-.++..+|.+.+++.
T Consensus 127 ~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~ 170 (261)
T TIGR02881 127 KEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFP 170 (261)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccc
Confidence 34666777777766677777778877777777778888888874
No 36
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=27.63 E-value=62 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCC-CceEEEEecchHHH
Q 024725 52 SEFLVDKVSEYP-GEVSILALGPLTNL 77 (263)
Q Consensus 52 ~~~l~e~~~~~p-~~vtivaiGPlTNl 77 (263)
.+.|.+.++++. +.|.++++||...+
T Consensus 155 ~d~I~~~i~~~~~~~LiLiaLGPTAtV 181 (225)
T PF08759_consen 155 YDEILEAIKKYAKDKLILIALGPTATV 181 (225)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCcchh
Confidence 567788888774 67999999997654
No 37
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=24.30 E-value=1.2e+02 Score=29.22 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=38.1
Q ss_pred CcchhhccCcEEEeccccCCCCC----------CCccccccccCCHHHHHHHHhcCCcEEEEcCcc-ccccccCHHHHHH
Q 024725 84 DSSFASKVKNIVVLGGAFFALGN----------VNPAAEANIYGDPEAADVVFTSGANIAVVGINI-TTQVKLTDADFLE 152 (263)
Q Consensus 84 ~P~~~~~i~~i~iMGG~~~~~Gn----------~~~~aE~N~~~DpeAA~~Vl~s~~~i~lvpldv-t~~~~~~~~~~~~ 152 (263)
.+.-.++| ++++|||+|.+.-- ...-..| ..|-|.|+..=+.+ ....+++.+ |+.=.+.++.+++
T Consensus 128 igh~~~Kv-EliimGGTFta~~~~yqe~Fi~~~~~amn~f--~~~le~a~~~ne~~-~~r~vgitiETRPD~~~ee~ld~ 203 (515)
T COG1243 128 IGHTSDKV-ELIIMGGTFTALSLEYQEWFLKVALKAMNDF--GYDLEEAQRKNETA-ELRCVGITIETRPDYIDEEHLDQ 203 (515)
T ss_pred cCCCcceE-EEEEecccccCCCHHHHHHHHHHHHHhhhcc--chhHHHHHHhhccc-ccceeEEEEecCccccCHHHHHH
Confidence 34445566 89999999975310 0111234 66677777766543 333444433 4445556666766
Q ss_pred HHh
Q 024725 153 LRQ 155 (263)
Q Consensus 153 l~~ 155 (263)
+.+
T Consensus 204 mlk 206 (515)
T COG1243 204 MLK 206 (515)
T ss_pred HHh
Confidence 654
No 38
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=23.41 E-value=1.9e+02 Score=25.54 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHcCCCceEEEEecchHHHHHHHHhCcchhhccCcEE
Q 024725 49 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 95 (263)
Q Consensus 49 ~~A~~~l~e~~~~~p~~vtivaiGPlTNlA~al~~~P~~~~~i~~i~ 95 (263)
.++.+.|.+.+.....++.||+.|..-.+-..+..+|.+.+++...+
T Consensus 144 ~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i 190 (284)
T TIGR02880 144 QEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHV 190 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEE
Confidence 45667777777766667888888876666777788999999886433
No 39
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=23.38 E-value=2e+02 Score=22.52 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHcCC-CceEEEEecchHHHHHHHH-hCcchhhccCcEEEeccccC
Q 024725 49 KNASEFLVDKVSEYP-GEVSILALGPLTNLALAIK-RDSSFASKVKNIVVLGGAFF 102 (263)
Q Consensus 49 ~~A~~~l~e~~~~~p-~~vtivaiGPlTNlA~al~-~~P~~~~~i~~i~iMGG~~~ 102 (263)
.+-++.+.+.+++.. +++.+++-.==..+|+.+. ++|+ +|+.++++++...
T Consensus 50 ~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 50 EDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPD---RVKGLVLLSPPPP 102 (228)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGG---GEEEEEEESESSS
T ss_pred hhhhhhhhhccccccccccccccccccccccccccccccc---ccccceeeccccc
Confidence 344566777777664 6899999877777777554 4787 7888999987653
No 40
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=22.07 E-value=87 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=20.1
Q ss_pred HHHHHHHHHcC-CCceEEEEecchHHH
Q 024725 52 SEFLVDKVSEY-PGEVSILALGPLTNL 77 (263)
Q Consensus 52 ~~~l~e~~~~~-p~~vtivaiGPlTNl 77 (263)
.+.|.+.++++ ++.|.++|+||...+
T Consensus 173 yd~I~e~i~~~~k~~LiLlaLGPTAkV 199 (265)
T TIGR03728 173 YDEILEAIRENAKNKLILLMLGPTAKV 199 (265)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCchhh
Confidence 55677777777 578999999997554
No 41
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.46 E-value=1.2e+02 Score=22.86 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=15.1
Q ss_pred CceEEEEecchHHHHHHH
Q 024725 64 GEVSILALGPLTNLALAI 81 (263)
Q Consensus 64 ~~vtivaiGPlTNlA~al 81 (263)
.+++||+.|+++..|+..
T Consensus 10 ~di~iia~G~~~~~al~A 27 (124)
T PF02780_consen 10 ADITIIAYGSMVEEALEA 27 (124)
T ss_dssp SSEEEEEETTHHHHHHHH
T ss_pred CCEEEEeehHHHHHHHHH
Confidence 579999999999888644
No 42
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=20.63 E-value=62 Score=24.58 Aligned_cols=13 Identities=54% Similarity=1.145 Sum_probs=11.1
Q ss_pred CCceEEEEecchH
Q 024725 63 PGEVSILALGPLT 75 (263)
Q Consensus 63 p~~vtivaiGPlT 75 (263)
|+..|+|++||..
T Consensus 90 pgs~TvlaigP~~ 102 (116)
T PF01981_consen 90 PGSVTVLAIGPAP 102 (116)
T ss_dssp TTCEEEEEEEEEE
T ss_pred CCCeEEEEECcCC
Confidence 6788999999964
No 43
>PF13964 Kelch_6: Kelch motif
Probab=20.48 E-value=1e+02 Score=19.06 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=9.3
Q ss_pred CcEEEeccccC
Q 024725 92 KNIVVLGGAFF 102 (263)
Q Consensus 92 ~~i~iMGG~~~ 102 (263)
++||++||...
T Consensus 12 ~~iyv~GG~~~ 22 (50)
T PF13964_consen 12 GKIYVFGGYDN 22 (50)
T ss_pred CEEEEECCCCC
Confidence 57999999876
No 44
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.08 E-value=2e+02 Score=23.64 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCCceEEEEecch
Q 024725 53 EFLVDKVSEYPGEVSILALGPL 74 (263)
Q Consensus 53 ~~l~e~~~~~p~~vtivaiGPl 74 (263)
+.+++.+++..-++.+|++|.-
T Consensus 90 ~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 90 KAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHHHHHHcCCCEEEEEcCCc
Confidence 3455555555435666666643
Done!