Query 024726
Match_columns 263
No_of_seqs 68 out of 70
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 99.0 5.4E-09 1.2E-13 106.3 14.1 122 127-249 308-430 (632)
2 PF02845 CUE: CUE domain; Int 98.3 1.2E-06 2.6E-11 59.5 5.0 40 47-86 2-41 (42)
3 smart00546 CUE Domain that may 98.3 1.6E-06 3.5E-11 58.9 4.9 39 47-85 3-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.5 0.00023 5.1E-09 49.1 4.6 35 49-83 4-38 (39)
5 PF00627 UBA: UBA/TS-N domain; 96.1 0.013 2.7E-07 38.7 4.4 35 47-83 3-37 (37)
6 COG3074 Uncharacterized protei 95.7 0.2 4.4E-06 39.1 10.1 68 155-234 5-72 (79)
7 PRK15422 septal ring assembly 95.7 0.2 4.4E-06 39.5 10.2 69 154-234 4-72 (79)
8 PF15619 Lebercilin: Ciliary p 94.8 0.71 1.5E-05 41.2 12.3 74 172-245 14-98 (194)
9 PF09744 Jnk-SapK_ap_N: JNK_SA 94.5 0.88 1.9E-05 39.6 12.0 77 153-236 32-110 (158)
10 cd00194 UBA Ubiquitin Associat 93.3 0.21 4.5E-06 32.4 4.6 35 48-84 3-37 (38)
11 smart00165 UBA Ubiquitin assoc 93.2 0.21 4.6E-06 32.3 4.5 34 48-83 3-36 (37)
12 PF10205 KLRAQ: Predicted coil 93.2 0.77 1.7E-05 37.8 8.5 51 188-248 9-59 (102)
13 PF06005 DUF904: Protein of un 92.9 1.8 4E-05 33.2 9.8 62 154-234 4-65 (72)
14 PF02403 Seryl_tRNA_N: Seryl-t 92.0 3.3 7.1E-05 32.6 10.6 87 156-242 11-101 (108)
15 PRK10884 SH3 domain-containing 91.9 3.2 6.9E-05 37.5 11.6 70 175-246 98-170 (206)
16 PF15058 Speriolin_N: Sperioli 91.6 0.27 5.8E-06 44.6 4.4 24 175-199 17-40 (200)
17 PHA02047 phage lambda Rz1-like 91.6 1.2 2.6E-05 36.6 7.7 63 197-262 26-90 (101)
18 PRK09413 IS2 repressor TnpA; R 89.9 0.59 1.3E-05 38.0 4.7 34 173-206 74-107 (121)
19 PF05010 TACC: Transforming ac 89.3 14 0.0003 33.6 13.4 94 153-246 43-142 (207)
20 PF13851 GAS: Growth-arrest sp 89.2 12 0.00025 33.5 12.7 71 172-249 50-120 (201)
21 PLN02678 seryl-tRNA synthetase 89.1 7.4 0.00016 39.0 12.5 82 172-262 35-116 (448)
22 KOG1853 LIS1-interacting prote 88.2 4.5 9.8E-05 38.7 9.8 66 178-243 53-126 (333)
23 PRK05431 seryl-tRNA synthetase 87.9 9.4 0.0002 37.6 12.3 74 171-244 29-102 (425)
24 PRK11637 AmiB activator; Provi 87.2 30 0.00066 33.6 16.1 9 139-147 145-153 (428)
25 KOG4005 Transcription factor X 87.2 6.9 0.00015 37.1 10.3 66 164-230 76-153 (292)
26 PF13747 DUF4164: Domain of un 87.1 13 0.00029 29.4 11.9 83 142-233 3-85 (89)
27 PF10473 CENP-F_leu_zip: Leuci 87.0 8.1 0.00018 33.2 9.9 67 173-249 48-114 (140)
28 TIGR00414 serS seryl-tRNA synt 86.7 12 0.00027 36.7 12.3 71 173-243 33-104 (418)
29 PF04111 APG6: Autophagy prote 86.5 19 0.00041 34.3 13.0 27 212-238 110-136 (314)
30 PF15058 Speriolin_N: Sperioli 86.5 1.7 3.6E-05 39.6 5.7 37 179-226 7-43 (200)
31 PF10211 Ax_dynein_light: Axon 86.3 23 0.0005 31.3 14.6 67 179-247 122-188 (189)
32 TIGR03495 phage_LysB phage lys 85.7 12 0.00026 32.1 10.2 68 175-243 28-96 (135)
33 PF14555 UBA_4: UBA-like domai 85.0 1.9 4E-05 29.3 4.1 36 49-85 3-38 (43)
34 PF11932 DUF3450: Protein of u 83.9 29 0.00063 31.4 12.5 49 170-218 49-97 (251)
35 KOG0971 Microtubule-associated 83.4 45 0.00097 37.1 15.3 78 169-246 324-441 (1243)
36 PF07106 TBPIP: Tat binding pr 80.9 12 0.00026 31.9 8.4 67 169-236 71-137 (169)
37 PF10828 DUF2570: Protein of u 80.8 21 0.00046 28.8 9.4 64 172-238 27-90 (110)
38 PF10226 DUF2216: Uncharacteri 80.3 10 0.00022 34.5 8.1 63 178-241 56-127 (195)
39 PRK13182 racA polar chromosome 80.3 27 0.00058 30.9 10.6 98 127-228 41-145 (175)
40 PF11559 ADIP: Afadin- and alp 79.7 34 0.00075 28.5 14.1 101 145-247 43-151 (151)
41 TIGR03752 conj_TIGR03752 integ 79.7 16 0.00035 37.2 10.1 17 175-191 78-94 (472)
42 PRK03918 chromosome segregatio 79.4 85 0.0018 32.8 16.3 31 135-165 150-180 (880)
43 PLN02320 seryl-tRNA synthetase 79.2 29 0.00064 35.5 11.8 66 171-237 94-159 (502)
44 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.9 36 0.00077 28.2 12.0 75 175-249 8-93 (132)
45 PRK09039 hypothetical protein; 78.8 41 0.00088 32.4 12.2 65 145-210 111-177 (343)
46 TIGR03752 conj_TIGR03752 integ 78.1 18 0.00038 36.9 9.8 24 175-198 71-94 (472)
47 KOG0241 Kinesin-like protein [ 77.5 13 0.00028 41.6 9.0 79 169-260 363-442 (1714)
48 KOG4588 Predicted ubiquitin-co 76.6 2.6 5.5E-05 39.6 3.2 32 56-87 1-32 (267)
49 PRK02224 chromosome segregatio 76.4 1.1E+02 0.0023 32.3 16.4 63 173-235 209-271 (880)
50 COG4797 Predicted regulatory d 76.1 2 4.3E-05 40.6 2.4 25 53-77 4-29 (268)
51 PF11932 DUF3450: Protein of u 75.9 34 0.00073 31.0 10.2 67 171-247 43-109 (251)
52 PF08317 Spc7: Spc7 kinetochor 75.1 77 0.0017 30.0 13.1 59 174-235 206-264 (325)
53 COG3206 GumC Uncharacterized p 74.8 62 0.0014 31.7 12.4 83 154-237 320-402 (458)
54 PF08614 ATG16: Autophagy prot 74.5 39 0.00084 29.6 10.0 78 153-242 101-178 (194)
55 PF07888 CALCOCO1: Calcium bin 74.5 40 0.00086 35.1 11.3 73 174-246 189-265 (546)
56 KOG2264 Exostosin EXT1L [Signa 74.3 21 0.00046 37.8 9.4 73 134-238 79-151 (907)
57 KOG0995 Centromere-associated 74.3 65 0.0014 33.8 12.7 66 173-238 297-362 (581)
58 KOG0804 Cytoplasmic Zn-finger 74.2 42 0.00091 34.4 11.1 27 220-246 426-452 (493)
59 KOG4603 TBP-1 interacting prot 73.8 21 0.00045 32.4 8.1 58 170-235 79-143 (201)
60 PF11577 NEMO: NF-kappa-B esse 73.7 36 0.00079 26.0 8.3 56 182-237 4-67 (68)
61 PRK13922 rod shape-determining 73.7 58 0.0013 29.6 11.2 37 188-224 73-109 (276)
62 PRK13729 conjugal transfer pil 73.0 21 0.00045 36.4 8.8 24 175-198 74-97 (475)
63 PF07058 Myosin_HC-like: Myosi 72.7 23 0.00051 34.6 8.7 71 173-248 3-85 (351)
64 PF02954 HTH_8: Bacterial regu 71.8 3.2 6.9E-05 28.0 2.0 25 60-84 5-29 (42)
65 PF01166 TSC22: TSC-22/dip/bun 71.7 5.3 0.00011 30.1 3.3 30 170-199 14-43 (59)
66 PF04849 HAP1_N: HAP1 N-termin 71.5 64 0.0014 31.3 11.3 93 143-238 206-306 (306)
67 CHL00098 tsf elongation factor 70.7 7.3 0.00016 35.2 4.6 40 48-88 3-42 (200)
68 PF10186 Atg14: UV radiation r 70.4 79 0.0017 28.2 11.4 34 175-208 61-94 (302)
69 COG4026 Uncharacterized protei 69.6 1E+02 0.0023 29.3 12.3 113 126-247 69-202 (290)
70 KOG0989 Replication factor C, 69.6 1.2E+02 0.0025 30.0 12.7 53 33-90 182-238 (346)
71 PHA02562 46 endonuclease subun 69.2 1.2E+02 0.0026 29.8 13.8 65 175-239 179-244 (562)
72 PF09744 Jnk-SapK_ap_N: JNK_SA 69.2 52 0.0011 28.7 9.4 63 173-235 85-148 (158)
73 PF11488 Lge1: Transcriptional 68.9 23 0.0005 27.3 6.4 48 203-250 25-72 (80)
74 KOG0976 Rho/Rac1-interacting s 68.6 90 0.002 34.6 12.6 91 154-244 298-408 (1265)
75 KOG2561 Adaptor protein NUB1, 68.3 12 0.00025 38.5 5.8 40 44-85 427-466 (568)
76 KOG4797 Transcriptional regula 68.1 15 0.00031 31.1 5.5 35 166-200 63-97 (123)
77 PF12325 TMF_TATA_bd: TATA ele 67.8 72 0.0016 26.7 11.1 20 178-197 31-50 (120)
78 PRK10884 SH3 domain-containing 67.3 54 0.0012 29.7 9.4 53 174-236 115-167 (206)
79 PRK12332 tsf elongation factor 67.2 9.5 0.00021 34.3 4.6 41 47-88 5-45 (198)
80 PF10506 MCC-bdg_PDZ: PDZ doma 66.8 56 0.0012 25.0 8.6 60 181-241 2-65 (67)
81 TIGR00219 mreC rod shape-deter 65.6 18 0.00039 33.8 6.3 17 173-189 69-85 (283)
82 KOG4360 Uncharacterized coiled 65.3 1.5E+02 0.0031 31.2 12.9 113 145-261 207-324 (596)
83 PF07888 CALCOCO1: Calcium bin 65.3 1.1E+02 0.0023 32.0 12.1 19 12-30 8-26 (546)
84 PF06156 DUF972: Protein of un 65.2 25 0.00054 28.9 6.3 26 173-198 18-43 (107)
85 PF10046 BLOC1_2: Biogenesis o 65.1 68 0.0015 25.4 13.2 54 194-247 38-91 (99)
86 PF06810 Phage_GP20: Phage min 64.6 71 0.0015 27.6 9.3 66 176-249 26-95 (155)
87 PF15070 GOLGA2L5: Putative go 64.6 94 0.002 32.6 11.7 41 173-213 90-130 (617)
88 PRK13169 DNA replication intia 64.2 26 0.00056 29.1 6.2 27 172-198 17-43 (110)
89 PF01166 TSC22: TSC-22/dip/bun 64.0 13 0.00028 28.0 4.0 31 215-245 14-44 (59)
90 PF02341 RcbX: RbcX protein; 63.5 39 0.00085 28.2 7.2 29 124-161 49-77 (111)
91 PF07334 IFP_35_N: Interferon- 63.0 14 0.00031 29.0 4.3 30 173-202 3-32 (76)
92 PF10234 Cluap1: Clusterin-ass 63.0 1.1E+02 0.0024 29.0 11.0 100 124-235 129-249 (267)
93 PRK06369 nac nascent polypepti 62.5 9.7 0.00021 31.9 3.5 35 50-85 80-114 (115)
94 PF08614 ATG16: Autophagy prot 61.7 24 0.00051 30.9 5.9 61 175-238 86-146 (194)
95 KOG0977 Nuclear envelope prote 61.6 1.5E+02 0.0033 30.9 12.4 39 211-249 151-189 (546)
96 smart00787 Spc7 Spc7 kinetocho 61.4 1.6E+02 0.0034 28.3 13.1 72 176-250 203-287 (312)
97 PF04111 APG6: Autophagy prote 60.2 1.6E+02 0.0035 28.1 12.8 80 173-252 53-136 (314)
98 PF13851 GAS: Growth-arrest sp 59.3 1.3E+02 0.0029 26.8 14.0 61 173-233 65-125 (201)
99 PF09728 Taxilin: Myosin-like 59.2 99 0.0021 29.5 10.0 63 171-236 238-300 (309)
100 PF05911 DUF869: Plant protein 58.9 2.5E+02 0.0053 30.6 13.8 69 175-246 90-158 (769)
101 KOG0250 DNA repair protein RAD 58.8 2E+02 0.0043 32.5 13.3 59 175-237 406-465 (1074)
102 TIGR00264 alpha-NAC-related pr 58.6 12 0.00026 31.5 3.4 26 59-84 90-115 (116)
103 TIGR00116 tsf translation elon 58.3 8.1 0.00018 36.7 2.6 41 47-88 5-45 (290)
104 PF06005 DUF904: Protein of un 58.1 70 0.0015 24.5 7.3 26 172-197 27-52 (72)
105 PRK15354 type III secretion sy 58.1 1.6E+02 0.0035 27.5 11.8 39 125-163 19-65 (224)
106 PF10211 Ax_dynein_light: Axon 57.7 86 0.0019 27.8 8.8 57 175-233 132-188 (189)
107 TIGR00219 mreC rod shape-deter 57.7 28 0.00061 32.6 6.1 39 186-224 68-107 (283)
108 PF11559 ADIP: Afadin- and alp 57.5 1.1E+02 0.0024 25.4 12.0 63 171-236 60-122 (151)
109 PRK09377 tsf elongation factor 57.3 8.1 0.00018 36.7 2.5 41 47-88 6-46 (290)
110 PF05055 DUF677: Protein of un 57.3 1.9E+02 0.0042 28.1 12.0 77 172-248 252-328 (336)
111 PF13118 DUF3972: Protein of u 56.9 68 0.0015 27.4 7.6 19 183-201 84-102 (126)
112 PHA02562 46 endonuclease subun 56.7 1.6E+02 0.0034 29.1 11.3 87 145-232 260-354 (562)
113 TIGR01837 PHA_granule_1 poly(h 56.1 43 0.00093 27.6 6.2 91 127-235 23-116 (118)
114 KOG0612 Rho-associated, coiled 56.0 1.6E+02 0.0035 33.7 12.1 74 175-248 463-541 (1317)
115 PF14662 CCDC155: Coiled-coil 55.6 1.7E+02 0.0036 26.8 11.2 78 172-249 104-192 (193)
116 KOG0978 E3 ubiquitin ligase in 54.8 3.1E+02 0.0066 29.6 14.3 81 179-259 50-134 (698)
117 PF09789 DUF2353: Uncharacteri 54.7 43 0.00094 32.5 6.9 31 173-203 82-112 (319)
118 PF04380 BMFP: Membrane fusoge 54.5 98 0.0021 23.8 8.5 29 208-236 50-78 (79)
119 KOG0977 Nuclear envelope prote 54.1 38 0.00082 35.2 6.7 47 200-250 31-77 (546)
120 smart00804 TAP_C C-terminal do 53.9 21 0.00045 26.7 3.7 34 55-88 20-53 (63)
121 KOG4343 bZIP transcription fac 53.6 22 0.00047 37.2 4.9 58 154-211 278-336 (655)
122 PRK13922 rod shape-determining 53.6 1.3E+02 0.0029 27.3 9.6 23 174-196 73-95 (276)
123 PF05300 DUF737: Protein of un 53.0 1.6E+02 0.0035 26.5 9.8 28 209-239 138-165 (187)
124 KOG4343 bZIP transcription fac 52.7 46 0.001 34.9 7.0 47 149-197 297-343 (655)
125 KOG3119 Basic region leucine z 52.6 46 0.001 31.0 6.6 37 183-229 221-257 (269)
126 COG5296 Transcription factor i 52.6 25 0.00053 35.7 5.0 55 178-240 348-402 (521)
127 PF11180 DUF2968: Protein of u 52.5 1.9E+02 0.004 26.5 13.3 21 150-170 84-104 (192)
128 TIGR03185 DNA_S_dndD DNA sulfu 52.3 2.9E+02 0.0062 28.6 14.1 16 42-57 37-52 (650)
129 PRK14872 rod shape-determining 52.3 36 0.00078 33.2 6.0 18 173-190 60-77 (337)
130 KOG3647 Predicted coiled-coil 52.2 2E+02 0.0043 28.1 10.7 65 122-192 70-134 (338)
131 PF09726 Macoilin: Transmembra 51.9 2.4E+02 0.0051 30.2 12.3 32 213-244 550-581 (697)
132 PF10267 Tmemb_cc2: Predicted 51.8 1.3E+02 0.0028 30.1 9.8 25 214-238 61-85 (395)
133 TIGR01837 PHA_granule_1 poly(h 51.4 1.4E+02 0.003 24.6 10.4 70 127-197 41-116 (118)
134 PF06156 DUF972: Protein of un 51.3 1.3E+02 0.0027 24.8 8.2 39 212-250 19-57 (107)
135 cd07685 F-BAR_Fes The F-BAR (F 51.2 2.2E+02 0.0047 26.8 12.3 50 184-236 98-149 (237)
136 PF07989 Microtub_assoc: Micro 50.7 1.1E+02 0.0025 23.5 8.1 22 215-236 50-71 (75)
137 PRK11091 aerobic respiration c 50.3 3E+02 0.0065 28.3 12.6 21 145-165 80-100 (779)
138 cd07429 Cby_like Chibby, a nuc 50.1 20 0.00044 29.8 3.4 17 175-191 84-100 (108)
139 COG2433 Uncharacterized conser 48.5 3.1E+02 0.0068 29.3 12.2 36 200-235 466-501 (652)
140 PF12805 FUSC-like: FUSC-like 48.4 83 0.0018 28.8 7.5 76 154-230 180-258 (284)
141 PF05769 DUF837: Protein of un 48.3 2E+02 0.0043 25.6 12.1 22 210-231 72-93 (181)
142 PF06364 DUF1068: Protein of u 47.9 83 0.0018 28.4 7.0 44 181-229 81-124 (176)
143 PRK03918 chromosome segregatio 47.9 3.5E+02 0.0077 28.3 14.3 10 45-54 35-44 (880)
144 PF09006 Surfac_D-trimer: Lung 47.4 42 0.00091 24.2 4.2 24 180-203 2-25 (46)
145 COG5185 HEC1 Protein involved 47.4 1.7E+02 0.0036 30.7 9.9 90 136-225 290-385 (622)
146 PF03962 Mnd1: Mnd1 family; I 47.3 1.9E+02 0.0042 25.6 9.4 33 216-248 136-168 (188)
147 PF14915 CCDC144C: CCDC144C pr 46.6 1.7E+02 0.0038 28.5 9.4 70 175-245 4-79 (305)
148 PF13097 CENP-U: CENP-A nucleo 46.3 1.1E+02 0.0025 27.4 7.7 52 144-199 102-157 (175)
149 TIGR03007 pepcterm_ChnLen poly 46.2 3E+02 0.0064 27.0 11.4 24 64-87 165-188 (498)
150 TIGR01834 PHA_synth_III_E poly 46.2 2.9E+02 0.0064 27.0 13.7 29 209-237 290-318 (320)
151 COG1308 EGD2 Transcription fac 46.2 24 0.00051 30.1 3.2 23 62-84 99-121 (122)
152 TIGR02449 conserved hypothetic 46.1 1.3E+02 0.0029 22.9 8.7 24 174-197 18-41 (65)
153 PF04803 Cor1: Cor1/Xlr/Xmr co 45.7 1.8E+02 0.004 24.6 8.6 28 214-241 88-115 (130)
154 PF07851 TMPIT: TMPIT-like pro 45.4 2.1E+02 0.0045 28.0 10.0 73 171-246 12-85 (330)
155 PF05597 Phasin: Poly(hydroxya 45.3 1.3E+02 0.0028 25.6 7.6 25 145-169 74-98 (132)
156 PF10174 Cast: RIM-binding pro 44.8 4.5E+02 0.0097 28.7 13.1 117 130-249 402-568 (775)
157 PF13870 DUF4201: Domain of un 44.8 2E+02 0.0043 24.6 10.9 72 173-245 45-121 (177)
158 PHA02047 phage lambda Rz1-like 44.8 95 0.0021 25.7 6.4 48 175-228 32-79 (101)
159 PF03961 DUF342: Protein of un 44.7 2E+02 0.0043 28.4 9.8 34 215-248 375-408 (451)
160 TIGR01069 mutS2 MutS2 family p 44.5 4.1E+02 0.0089 28.6 12.8 6 151-156 501-506 (771)
161 PLN02939 transferase, transfer 44.4 2.8E+02 0.006 31.1 11.6 26 182-207 224-249 (977)
162 PF07445 priB_priC: Primosomal 44.1 37 0.0008 29.7 4.3 63 186-248 72-135 (173)
163 PRK00846 hypothetical protein; 43.5 1.6E+02 0.0035 23.1 7.9 36 217-252 29-64 (77)
164 PF04102 SlyX: SlyX; InterPro 43.4 99 0.0021 23.1 5.9 34 216-249 19-52 (69)
165 PF01486 K-box: K-box region; 43.2 94 0.002 24.3 6.1 33 167-199 65-97 (100)
166 PF04899 MbeD_MobD: MbeD/MobD 43.1 1.5E+02 0.0033 22.8 8.0 39 155-198 11-49 (70)
167 PF03961 DUF342: Protein of un 42.8 2.1E+02 0.0045 28.2 9.7 25 213-237 380-404 (451)
168 PF10267 Tmemb_cc2: Predicted 42.5 2E+02 0.0044 28.8 9.5 48 185-235 270-318 (395)
169 PF12128 DUF3584: Protein of u 42.4 4.4E+02 0.0096 29.6 13.0 14 73-86 255-268 (1201)
170 PRK10929 putative mechanosensi 42.3 2.3E+02 0.005 32.0 10.8 68 181-250 212-279 (1109)
171 PF03943 TAP_C: TAP C-terminal 42.2 11 0.00024 26.8 0.7 30 59-88 12-41 (51)
172 KOG1071 Mitochondrial translat 42.0 22 0.00048 34.8 2.8 43 45-88 45-87 (340)
173 PF01486 K-box: K-box region; 41.9 1.5E+02 0.0033 23.1 7.1 29 217-245 70-98 (100)
174 PF11544 Spc42p: Spindle pole 41.8 1.7E+02 0.0038 23.1 8.1 54 188-244 2-55 (76)
175 PRK04863 mukB cell division pr 41.6 5.5E+02 0.012 30.0 13.8 33 214-246 389-421 (1486)
176 TIGR02894 DNA_bind_RsfA transc 41.4 1.8E+02 0.0038 26.0 8.0 39 153-197 86-124 (161)
177 COG4467 Regulator of replicati 41.2 44 0.00095 28.2 4.0 27 171-197 16-42 (114)
178 KOG4286 Dystrophin-like protei 41.1 75 0.0016 34.8 6.6 56 195-250 192-248 (966)
179 TIGR03319 YmdA_YtgF conserved 40.9 4.2E+02 0.009 27.2 15.4 13 145-157 27-39 (514)
180 KOG4571 Activating transcripti 40.7 2.1E+02 0.0046 27.7 9.1 40 178-227 249-288 (294)
181 PF09787 Golgin_A5: Golgin sub 40.7 2.4E+02 0.0053 28.4 10.0 57 144-200 236-297 (511)
182 PLN03025 replication factor C 40.6 52 0.0011 30.5 4.9 56 25-88 147-206 (319)
183 PF06008 Laminin_I: Laminin Do 40.4 2.9E+02 0.0062 25.1 12.8 98 143-246 123-223 (264)
184 KOG4603 TBP-1 interacting prot 40.1 76 0.0017 28.9 5.7 69 169-237 26-101 (201)
185 PF12958 DUF3847: Protein of u 39.8 50 0.0011 26.4 4.0 31 209-239 2-32 (86)
186 KOG4571 Activating transcripti 39.8 49 0.0011 31.9 4.7 30 172-201 257-286 (294)
187 COG1196 Smc Chromosome segrega 39.6 5.8E+02 0.013 28.5 15.5 20 217-236 476-495 (1163)
188 PF03938 OmpH: Outer membrane 39.5 2.1E+02 0.0046 23.4 10.1 29 206-237 81-109 (158)
189 TIGR01843 type_I_hlyD type I s 39.5 3.2E+02 0.007 25.5 13.2 17 240-256 264-280 (423)
190 PF06637 PV-1: PV-1 protein (P 39.4 4.3E+02 0.0094 26.9 12.1 30 208-247 363-392 (442)
191 PF12777 MT: Microtubule-bindi 39.2 2.4E+02 0.0052 26.9 9.2 127 129-260 200-329 (344)
192 KOG4809 Rab6 GTPase-interactin 39.0 1.6E+02 0.0036 31.1 8.5 61 166-236 327-387 (654)
193 PF14645 Chibby: Chibby family 38.9 37 0.0008 28.2 3.3 29 175-203 69-97 (116)
194 PRK13169 DNA replication intia 38.8 2.3E+02 0.0049 23.5 8.2 36 213-248 20-55 (110)
195 PRK13729 conjugal transfer pil 38.5 1.5E+02 0.0033 30.4 8.2 13 127-139 53-65 (475)
196 PF09311 Rab5-bind: Rabaptin-l 38.2 27 0.00059 30.5 2.6 64 171-234 16-83 (181)
197 PF09738 DUF2051: Double stran 37.9 3.8E+02 0.0082 25.8 13.1 84 149-235 83-167 (302)
198 TIGR02894 DNA_bind_RsfA transc 37.1 1.8E+02 0.004 25.8 7.5 44 187-233 100-143 (161)
199 COG1792 MreC Cell shape-determ 37.1 1E+02 0.0022 29.1 6.3 37 188-224 70-106 (284)
200 PF07200 Mod_r: Modifier of ru 37.0 2.4E+02 0.0052 23.3 10.1 22 173-194 30-51 (150)
201 KOG2991 Splicing regulator [RN 36.8 2.2E+02 0.0048 27.6 8.4 66 166-234 104-169 (330)
202 TIGR03017 EpsF chain length de 36.4 4E+02 0.0086 25.6 13.3 17 69-85 180-196 (444)
203 KOG4083 Head-elevated expressi 36.0 81 0.0018 28.8 5.2 16 223-238 102-117 (192)
204 PF15070 GOLGA2L5: Putative go 35.9 4.9E+02 0.011 27.5 11.5 71 178-248 168-242 (617)
205 PF04003 Utp12: Dip2/Utp12 Fam 35.7 2E+02 0.0044 22.1 7.9 54 194-247 54-109 (110)
206 PRK09458 pspB phage shock prot 35.5 75 0.0016 25.0 4.3 24 213-236 40-63 (75)
207 COG1938 Archaeal enzymes of AT 35.5 59 0.0013 30.5 4.4 43 145-191 183-225 (244)
208 TIGR01010 BexC_CtrB_KpsE polys 35.5 3.9E+02 0.0084 25.2 12.0 49 142-190 139-190 (362)
209 KOG0447 Dynamin-like GTP bindi 35.4 1.8E+02 0.0038 31.4 8.2 59 169-234 232-295 (980)
210 PRK05564 DNA polymerase III su 35.2 55 0.0012 30.2 4.2 53 25-85 141-193 (313)
211 KOG0161 Myosin class II heavy 35.1 7E+02 0.015 30.2 13.5 70 175-247 1489-1558(1930)
212 TIGR00606 rad50 rad50. This fa 35.1 6E+02 0.013 28.7 12.7 22 217-238 890-911 (1311)
213 PF10226 DUF2216: Uncharacteri 35.1 2.3E+02 0.0049 26.1 7.9 56 145-201 81-139 (195)
214 KOG2129 Uncharacterized conser 35.0 2.6E+02 0.0057 28.9 9.0 11 219-229 147-157 (552)
215 PRK10920 putative uroporphyrin 35.0 4.7E+02 0.01 26.1 11.6 18 175-192 65-82 (390)
216 KOG4330 Uncharacterized conser 34.2 3.7E+02 0.0081 24.7 12.3 17 71-87 82-98 (206)
217 PRK04406 hypothetical protein; 34.1 2.2E+02 0.0047 21.9 8.1 34 217-250 27-60 (75)
218 KOG2264 Exostosin EXT1L [Signa 33.8 4.5E+02 0.0097 28.5 10.7 47 206-252 105-151 (907)
219 TIGR01730 RND_mfp RND family e 33.8 2.3E+02 0.0049 25.3 7.8 20 215-234 109-128 (322)
220 COG1196 Smc Chromosome segrega 33.8 7.1E+02 0.015 27.8 14.8 24 63-86 607-632 (1163)
221 KOG2751 Beclin-like protein [S 33.7 2.7E+02 0.0058 28.5 8.9 67 181-247 147-215 (447)
222 PF03962 Mnd1: Mnd1 family; I 33.2 3.5E+02 0.0075 24.0 11.3 95 129-236 68-163 (188)
223 PF10018 Med4: Vitamin-D-recep 33.0 3.3E+02 0.0073 23.8 9.3 48 186-237 4-51 (188)
224 PRK14011 prefoldin subunit alp 32.8 64 0.0014 27.8 3.9 27 209-235 18-44 (144)
225 KOG0250 DNA repair protein RAD 32.8 7.9E+02 0.017 28.0 13.9 73 172-244 237-317 (1074)
226 KOG0161 Myosin class II heavy 32.8 9.8E+02 0.021 29.1 15.2 84 126-211 1357-1441(1930)
227 PF14915 CCDC144C: CCDC144C pr 32.7 3.4E+02 0.0075 26.5 9.1 57 175-241 226-283 (305)
228 PRK14950 DNA polymerase III su 32.7 5.6E+02 0.012 26.3 11.8 42 47-88 182-227 (585)
229 PF09730 BicD: Microtubule-ass 32.7 2.2E+02 0.0047 30.8 8.5 56 178-243 266-321 (717)
230 TIGR02976 phageshock_pspB phag 32.7 88 0.0019 24.3 4.3 24 213-236 40-63 (75)
231 PRK04195 replication factor C 32.6 60 0.0013 32.1 4.2 50 33-87 154-207 (482)
232 PF15188 CCDC-167: Coiled-coil 32.6 2.3E+02 0.0049 22.7 6.7 26 214-239 42-67 (85)
233 KOG4552 Vitamin-D-receptor int 32.5 3E+02 0.0064 26.1 8.3 81 157-237 3-96 (272)
234 PRK04863 mukB cell division pr 32.3 8.9E+02 0.019 28.4 15.3 38 177-214 383-420 (1486)
235 PRK02793 phi X174 lysis protei 32.1 2.3E+02 0.0049 21.5 7.9 35 217-251 24-58 (72)
236 KOG2273 Membrane coat complex 31.9 5.2E+02 0.011 25.7 13.3 73 175-247 354-435 (503)
237 PF04375 HemX: HemX; InterPro 31.9 4.8E+02 0.01 25.3 10.7 23 214-236 99-121 (372)
238 PF07106 TBPIP: Tat binding pr 31.8 3.1E+02 0.0067 23.2 7.9 22 48-72 21-42 (169)
239 PF13870 DUF4201: Domain of un 31.8 3.3E+02 0.0071 23.3 10.5 63 175-237 110-174 (177)
240 PRK00888 ftsB cell division pr 31.6 2E+02 0.0043 23.2 6.4 23 213-235 39-61 (105)
241 PRK11459 multidrug resistance 31.5 5.1E+02 0.011 25.4 13.8 105 143-249 368-472 (478)
242 PF07989 Microtub_assoc: Micro 31.4 1.3E+02 0.0027 23.2 5.0 61 171-231 8-73 (75)
243 PF05384 DegS: Sensor protein 31.3 2.4E+02 0.0053 24.7 7.3 42 207-248 26-67 (159)
244 KOG2891 Surface glycoprotein [ 31.2 5.3E+02 0.012 25.5 13.3 81 150-234 322-419 (445)
245 PHA03162 hypothetical protein; 31.1 2.2E+02 0.0047 24.8 6.7 26 178-203 14-39 (135)
246 PF15463 ECM11: Extracellular 31.1 1.7E+02 0.0038 24.5 6.2 59 128-191 71-133 (139)
247 PF09340 NuA4: Histone acetylt 31.1 91 0.002 24.2 4.2 38 216-253 3-41 (80)
248 PRK10803 tol-pal system protei 31.1 3.5E+02 0.0076 25.0 8.7 12 157-168 43-54 (263)
249 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.0 3E+02 0.0066 22.6 14.3 91 150-246 38-129 (132)
250 PF12718 Tropomyosin_1: Tropom 31.0 3.3E+02 0.0072 23.1 9.7 59 172-230 37-95 (143)
251 PRK02119 hypothetical protein; 30.8 2.4E+02 0.0053 21.5 7.9 35 217-251 25-59 (73)
252 PF05622 HOOK: HOOK protein; 30.8 16 0.00036 38.0 0.0 10 144-153 261-270 (713)
253 KOG1937 Uncharacterized conser 30.6 1.8E+02 0.0039 30.1 7.2 76 171-246 411-500 (521)
254 PF04012 PspA_IM30: PspA/IM30 30.5 3.7E+02 0.008 23.5 14.0 10 130-139 26-35 (221)
255 PRK00106 hypothetical protein; 30.4 6.4E+02 0.014 26.2 14.0 12 146-157 49-60 (535)
256 TIGR01730 RND_mfp RND family e 30.3 3.6E+02 0.0077 24.0 8.4 9 224-232 111-119 (322)
257 PRK14954 DNA polymerase III su 30.2 6.7E+02 0.015 26.4 13.1 51 33-88 180-234 (620)
258 PHA03162 hypothetical protein; 30.1 87 0.0019 27.2 4.2 34 224-257 15-48 (135)
259 cd00632 Prefoldin_beta Prefold 29.9 2.8E+02 0.006 21.8 7.3 55 134-190 50-104 (105)
260 PF08172 CASP_C: CASP C termin 29.9 1.8E+02 0.0038 27.1 6.6 47 199-245 83-130 (248)
261 KOG0976 Rho/Rac1-interacting s 29.9 7.6E+02 0.016 27.9 11.8 42 192-236 100-141 (1265)
262 PF05812 Herpes_BLRF2: Herpesv 29.9 78 0.0017 26.8 3.8 26 179-204 5-30 (118)
263 COG0264 Tsf Translation elonga 29.7 41 0.0009 32.4 2.5 27 65-91 23-49 (296)
264 PF01008 IF-2B: Initiation fac 29.6 3E+02 0.0066 24.8 8.0 53 147-203 4-59 (282)
265 PF12999 PRKCSH-like: Glucosid 29.6 4.2E+02 0.0091 23.8 8.7 13 223-235 161-173 (176)
266 KOG4643 Uncharacterized coiled 29.4 9.1E+02 0.02 27.7 12.8 39 182-220 455-493 (1195)
267 PF15035 Rootletin: Ciliary ro 29.3 4E+02 0.0087 23.6 8.5 26 175-200 79-104 (182)
268 PF14193 DUF4315: Domain of un 29.2 1.2E+02 0.0025 24.1 4.5 57 189-250 6-62 (83)
269 PRK00409 recombination and DNA 29.2 7.5E+02 0.016 26.7 12.7 9 152-160 518-526 (782)
270 PF10186 Atg14: UV radiation r 29.1 4.1E+02 0.0089 23.6 14.9 27 175-201 82-108 (302)
271 KOG2070 Guanine nucleotide exc 28.7 1.2E+02 0.0027 31.8 5.7 30 208-237 623-652 (661)
272 COG4942 Membrane-bound metallo 28.6 6.4E+02 0.014 25.7 14.7 41 172-212 163-203 (420)
273 PF00170 bZIP_1: bZIP transcri 28.4 2.3E+02 0.0049 20.4 8.4 25 217-241 35-59 (64)
274 PF13991 BssS: BssS protein fa 28.4 59 0.0013 25.4 2.7 23 218-240 45-67 (73)
275 KOG2391 Vacuolar sorting prote 28.4 5.4E+02 0.012 25.8 9.7 105 138-246 210-327 (365)
276 PF11236 DUF3037: Protein of u 28.4 61 0.0013 26.5 2.9 23 51-73 39-61 (118)
277 COG2959 HemX Uncharacterized e 28.3 5.3E+02 0.012 26.0 9.8 59 177-235 63-124 (391)
278 PF12711 Kinesin-relat_1: Kine 28.3 3.1E+02 0.0068 22.0 7.8 35 173-211 27-67 (86)
279 KOG1840 Kinesin light chain [C 28.1 4.9E+02 0.011 26.8 9.9 90 142-233 296-389 (508)
280 PF02183 HALZ: Homeobox associ 27.8 2.2E+02 0.0047 20.0 6.0 23 175-197 3-25 (45)
281 KOG3850 Predicted membrane pro 27.7 3.9E+02 0.0086 27.2 8.8 37 193-235 82-118 (455)
282 PF05812 Herpes_BLRF2: Herpesv 27.6 1E+02 0.0022 26.1 4.2 27 224-250 5-31 (118)
283 PF15254 CCDC14: Coiled-coil d 27.5 3.6E+02 0.0078 29.8 9.0 86 154-242 360-454 (861)
284 PF07412 Geminin: Geminin; In 27.5 1.7E+02 0.0036 26.9 5.8 58 161-226 110-167 (200)
285 PF06667 PspB: Phage shock pro 27.2 1.2E+02 0.0027 23.6 4.3 23 214-236 41-63 (75)
286 PRK09087 hypothetical protein; 27.2 63 0.0014 28.9 3.1 58 25-87 139-200 (226)
287 PRK05707 DNA polymerase III su 27.2 89 0.0019 29.8 4.2 54 23-84 152-205 (328)
288 KOG4674 Uncharacterized conser 27.0 9.7E+02 0.021 29.0 12.8 65 171-245 655-719 (1822)
289 PF11336 DUF3138: Protein of u 26.8 1.1E+02 0.0025 31.4 5.0 61 177-237 25-105 (514)
290 COG4567 Response regulator con 26.7 64 0.0014 29.1 2.9 25 63-87 145-169 (182)
291 PF07544 Med9: RNA polymerase 26.6 1.6E+02 0.0035 22.7 4.9 55 174-231 25-82 (83)
292 PF06810 Phage_GP20: Phage min 26.6 4E+02 0.0087 22.9 7.8 51 182-232 18-68 (155)
293 PF04102 SlyX: SlyX; InterPro 26.2 2.8E+02 0.006 20.7 7.3 21 215-235 32-52 (69)
294 PRK09112 DNA polymerase III su 26.1 84 0.0018 30.3 3.9 55 23-85 187-243 (351)
295 PRK04132 replication factor C 26.1 63 0.0014 35.2 3.3 57 24-88 677-737 (846)
296 PRK10328 DNA binding protein, 26.1 2.6E+02 0.0056 23.9 6.4 34 201-234 35-68 (134)
297 PF07361 Cytochrom_B562: Cytoc 26.0 3.5E+02 0.0075 21.7 8.6 87 137-230 15-101 (103)
298 KOG4077 Cytochrome c oxidase, 26.0 72 0.0016 28.0 3.1 27 61-87 83-111 (149)
299 PF14257 DUF4349: Domain of un 25.8 4.5E+02 0.0096 23.8 8.3 15 74-88 59-73 (262)
300 PRK11166 chemotaxis regulator 25.7 5E+02 0.011 23.9 8.6 52 140-191 43-99 (214)
301 PF07544 Med9: RNA polymerase 25.4 3.2E+02 0.0069 21.1 6.6 53 194-247 25-77 (83)
302 PHA01750 hypothetical protein 25.3 3.3E+02 0.0073 21.3 7.7 47 188-236 24-70 (75)
303 PF06818 Fez1: Fez1; InterPro 25.2 4.6E+02 0.01 24.1 8.2 71 178-248 32-106 (202)
304 PF05557 MAD: Mitotic checkpoi 25.2 2.3E+02 0.0049 29.8 7.1 21 145-165 515-535 (722)
305 PF05769 DUF837: Protein of un 25.2 4.9E+02 0.011 23.1 11.9 38 185-235 71-108 (181)
306 PRK09841 cryptic autophosphory 25.1 8.3E+02 0.018 25.8 11.7 49 149-197 239-294 (726)
307 PF12781 AAA_9: ATP-binding dy 25.0 1.3E+02 0.0027 27.3 4.6 39 194-238 158-196 (228)
308 PF14775 NYD-SP28_assoc: Sperm 24.9 2.9E+02 0.0063 20.4 5.9 13 215-227 47-59 (60)
309 PRK00106 hypothetical protein; 24.8 8.1E+02 0.018 25.5 15.7 9 148-156 40-48 (535)
310 PF02268 TFIIA_gamma_N: Transc 24.7 72 0.0016 23.1 2.4 27 137-165 20-46 (49)
311 PF08703 PLC-beta_C: PLC-beta 24.6 4E+02 0.0088 24.1 7.6 54 196-252 114-176 (185)
312 PRK13710 plasmid maintenance p 24.4 1.6E+02 0.0035 22.7 4.4 42 155-196 24-65 (72)
313 KOG3856 Uncharacterized conser 24.4 1.7E+02 0.0037 25.3 5.0 35 208-242 10-44 (135)
314 PF14662 CCDC155: Coiled-coil 24.3 5.6E+02 0.012 23.5 10.9 21 214-234 66-86 (193)
315 PHA03155 hypothetical protein; 24.3 1.1E+02 0.0023 26.0 3.6 23 180-202 11-33 (115)
316 PF07111 HCR: Alpha helical co 24.3 9.6E+02 0.021 26.2 11.6 78 173-250 474-556 (739)
317 KOG3119 Basic region leucine z 24.2 4.8E+02 0.01 24.4 8.4 39 214-252 221-259 (269)
318 PF06548 Kinesin-related: Kine 24.0 1.7E+02 0.0036 30.2 5.6 13 215-227 126-138 (488)
319 PRK10803 tol-pal system protei 23.9 3.6E+02 0.0078 24.9 7.4 50 146-197 39-88 (263)
320 KOG4421 Uncharacterized conser 23.9 2.2E+02 0.0047 29.2 6.3 58 173-247 18-75 (637)
321 PF12718 Tropomyosin_1: Tropom 23.8 4.5E+02 0.0098 22.3 13.5 77 173-249 24-100 (143)
322 KOG0971 Microtubule-associated 23.8 7.3E+02 0.016 28.3 10.6 57 190-246 496-556 (1243)
323 COG2433 Uncharacterized conser 23.8 9.4E+02 0.02 25.9 12.7 70 175-247 420-492 (652)
324 KOG4807 F-actin binding protei 23.8 7E+02 0.015 25.8 9.8 11 191-201 442-452 (593)
325 PF15456 Uds1: Up-regulated Du 23.6 4.4E+02 0.0096 22.1 11.5 78 169-246 21-112 (124)
326 COG5302 Post-segregation antit 23.5 1.6E+02 0.0035 23.5 4.3 51 146-196 23-73 (80)
327 PRK04778 septation ring format 23.4 8.1E+02 0.018 25.1 12.5 13 47-59 218-230 (569)
328 PRK04325 hypothetical protein; 23.4 3.4E+02 0.0074 20.7 7.9 33 217-249 25-57 (74)
329 PRK12402 replication factor C 23.4 1E+02 0.0022 27.9 3.7 41 47-87 187-231 (337)
330 PF08657 DASH_Spc34: DASH comp 23.4 6.3E+02 0.014 23.8 9.9 51 154-204 161-214 (259)
331 PTZ00464 SNF-7-like protein; P 23.3 5.7E+02 0.012 23.3 9.7 53 142-203 13-67 (211)
332 PF10481 CENP-F_N: Cenp-F N-te 23.3 7.1E+02 0.015 24.4 10.1 44 209-252 89-132 (307)
333 PF06972 DUF1296: Protein of u 23.3 2E+02 0.0044 21.8 4.6 38 49-86 8-45 (60)
334 COG5281 Phage-related minor ta 23.2 5.7E+02 0.012 28.3 9.6 20 215-234 541-560 (833)
335 PF06034 DUF919: Nucleopolyhed 23.1 3.3E+02 0.0072 20.6 5.8 40 181-222 5-45 (62)
336 PF04344 CheZ: Chemotaxis phos 22.9 5E+02 0.011 23.4 8.0 23 141-163 32-54 (214)
337 PF10168 Nup88: Nuclear pore c 22.8 3.8E+02 0.0081 28.8 8.2 85 150-234 614-704 (717)
338 PF06785 UPF0242: Uncharacteri 22.7 7.7E+02 0.017 24.8 9.7 69 182-250 73-155 (401)
339 PF14197 Cep57_CLD_2: Centroso 22.7 3.5E+02 0.0075 20.5 9.5 23 175-197 3-25 (69)
340 KOG0796 Spliceosome subunit [R 22.5 7.5E+02 0.016 24.3 10.0 35 51-85 36-70 (319)
341 COG4026 Uncharacterized protei 22.4 3.1E+02 0.0066 26.2 6.6 18 74-91 17-34 (290)
342 PRK05896 DNA polymerase III su 22.3 1.2E+02 0.0025 32.0 4.3 57 25-89 167-227 (605)
343 TIGR02169 SMC_prok_A chromosom 22.3 9.8E+02 0.021 25.6 15.0 7 53-59 147-153 (1164)
344 TIGR03007 pepcterm_ChnLen poly 22.3 6.4E+02 0.014 24.7 9.2 16 173-188 278-293 (498)
345 PF10243 MIP-T3: Microtubule-b 22.2 29 0.00064 35.0 0.0 67 172-238 458-525 (539)
346 PRK14955 DNA polymerase III su 22.1 81 0.0018 30.4 3.0 51 33-88 180-234 (397)
347 COG1792 MreC Cell shape-determ 22.1 5.6E+02 0.012 24.1 8.4 54 196-249 54-110 (284)
348 cd07429 Cby_like Chibby, a nuc 22.0 1E+02 0.0023 25.6 3.2 28 175-202 70-97 (108)
349 PRK12704 phosphodiesterase; Pr 21.9 8.8E+02 0.019 24.9 15.4 12 146-157 34-45 (520)
350 PF04977 DivIC: Septum formati 21.9 3.1E+02 0.0067 19.7 5.7 25 210-234 26-50 (80)
351 PF11981 DUF3482: Domain of un 21.8 3.9E+02 0.0084 25.5 7.3 17 221-237 87-103 (292)
352 PF15372 DUF4600: Domain of un 21.8 3.9E+02 0.0085 23.0 6.6 62 173-243 18-81 (129)
353 PF05557 MAD: Mitotic checkpoi 21.7 9.5E+02 0.021 25.2 11.6 32 170-201 503-534 (722)
354 PF09755 DUF2046: Uncharacteri 21.7 5.2E+02 0.011 25.3 8.2 30 174-203 38-68 (310)
355 TIGR00999 8a0102 Membrane Fusi 21.6 4.2E+02 0.0091 23.1 7.1 26 209-234 55-80 (265)
356 COG1842 PspA Phage shock prote 21.6 6.4E+02 0.014 23.2 12.2 105 129-241 26-132 (225)
357 PLN02902 pantothenate kinase 21.6 3.9E+02 0.0085 29.6 8.1 37 129-165 523-567 (876)
358 PF06632 XRCC4: DNA double-str 21.6 7.7E+02 0.017 24.1 11.9 49 175-230 156-209 (342)
359 PF00517 GP41: Retroviral enve 21.5 5.2E+02 0.011 23.1 7.8 20 217-236 41-60 (204)
360 PRK14127 cell division protein 21.4 2.1E+02 0.0045 23.8 4.8 21 215-235 51-71 (109)
361 TIGR01541 tape_meas_lam_C phag 21.3 7.5E+02 0.016 23.9 12.2 21 216-236 84-104 (332)
362 KOG0933 Structural maintenance 21.3 1.3E+03 0.028 26.6 13.1 54 194-247 808-861 (1174)
363 PF05622 HOOK: HOOK protein; 21.3 31 0.00068 36.0 0.0 68 174-241 447-521 (713)
364 PRK14872 rod shape-determining 21.3 4.1E+02 0.0088 26.1 7.5 41 185-225 58-98 (337)
365 PF14282 FlxA: FlxA-like prote 21.2 4.4E+02 0.0095 21.2 6.7 14 175-188 24-37 (106)
366 PF04849 HAP1_N: HAP1 N-termin 21.2 7.7E+02 0.017 24.0 11.5 44 206-249 225-268 (306)
367 KOG0980 Actin-binding protein 21.2 1E+03 0.022 26.8 11.0 9 65-73 235-243 (980)
368 PF08549 SWI-SNF_Ssr4: Fungal 21.2 1.8E+02 0.0038 31.2 5.3 41 154-199 360-403 (669)
369 PRK10361 DNA recombination pro 21.2 9.2E+02 0.02 24.9 11.5 74 173-247 26-99 (475)
370 PF11180 DUF2968: Protein of u 21.1 6.5E+02 0.014 23.1 12.1 30 208-237 154-183 (192)
371 PF09753 Use1: Membrane fusion 21.1 2E+02 0.0043 26.1 5.1 63 153-225 8-70 (251)
372 PF07716 bZIP_2: Basic region 21.0 3E+02 0.0066 19.2 7.4 23 213-235 30-52 (54)
373 PRK06975 bifunctional uroporph 21.0 8.6E+02 0.019 25.6 10.3 23 215-237 385-407 (656)
374 PF09397 Ftsk_gamma: Ftsk gamm 20.9 79 0.0017 23.9 2.1 14 149-162 34-47 (65)
375 COG5185 HEC1 Protein involved 20.8 9.7E+02 0.021 25.3 10.3 31 217-247 332-362 (622)
376 KOG0981 DNA topoisomerase I [R 20.8 1.9E+02 0.0042 30.9 5.4 63 170-237 636-698 (759)
377 TIGR02302 aProt_lowcomp conser 20.6 8.2E+02 0.018 27.1 10.3 37 143-179 496-532 (851)
378 KOG2077 JNK/SAPK-associated pr 20.6 8.6E+02 0.019 26.4 10.0 40 209-248 337-376 (832)
379 PF10241 KxDL: Uncharacterized 20.6 4.2E+02 0.009 20.6 6.2 22 214-235 56-77 (88)
380 smart00338 BRLZ basic region l 20.5 3.3E+02 0.0072 19.5 8.0 30 213-242 31-60 (65)
381 KOG0447 Dynamin-like GTP bindi 20.5 2.8E+02 0.0061 30.0 6.5 68 151-227 203-270 (980)
382 PF08989 DUF1896: Domain of un 20.5 2E+02 0.0043 25.2 4.7 35 142-176 27-61 (144)
383 PRK07471 DNA polymerase III su 20.4 1.3E+02 0.0029 29.1 4.0 54 24-85 188-241 (365)
384 PRK09609 hypothetical protein; 20.3 2.9E+02 0.0063 27.0 6.2 25 217-241 140-164 (312)
385 COG2900 SlyX Uncharacterized p 20.3 3.2E+02 0.0069 21.4 5.3 32 200-234 17-48 (72)
386 PHA00276 phage lambda Rz-like 20.1 4.7E+02 0.01 23.0 6.9 27 221-247 55-81 (144)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=99.00 E-value=5.4e-09 Score=106.30 Aligned_cols=122 Identities=25% Similarity=0.306 Sum_probs=105.6
Q ss_pred ChhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024726 127 NGAEWVELFVKEMTS-ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHE 205 (263)
Q Consensus 127 ~g~eWVEl~V~EM~~-Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQhe 205 (263)
.|-.+|.-||.|... -....+...|..+.++..|+.+...+..++. .+..|..++|..++.|..+.+.|+++++++++
T Consensus 308 e~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al-~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 308 EQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREAL-ALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666555544 4458888899999999999998777665544 56779999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
...+++.+.++++++++++.+||+|||+|...||++..||.+.+
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~ 430 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSP 430 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999855
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.31 E-value=1.2e-06 Score=59.50 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=35.9
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
++.|..|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4568999999999999999999999999999999999764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.27 E-value=1.6e-06 Score=58.91 Aligned_cols=39 Identities=31% Similarity=0.607 Sum_probs=35.9
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
...++.|+.+||++++..++.+|++|++|++.||..|.+
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 346899999999999999999999999999999999864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.46 E-value=0.00023 Score=49.10 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=32.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHH
Q 024726 49 LLDRLRAFFPQLEPQLLERALEECNADLDSTIKKL 83 (263)
Q Consensus 49 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 83 (263)
.++-|..+||+..+.+||.+|+.||.|+-.||..+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 38999999999999999999999999999999864
No 5
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.10 E-value=0.013 Score=38.70 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=31.1
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHH
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKL 83 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 83 (263)
+..|..|..+ +.++....+||..||+|++.||.-|
T Consensus 3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 5678999999 9999999999999999999999865
No 6
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.2 Score=39.11 Aligned_cols=68 Identities=34% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 155 VLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 155 vLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
|||-+|.-|.. +-+.+.-+|.|...||+.-..|..|-.- .||.| +...+|.++||+--..+||+||.|
T Consensus 5 v~ekLE~Kiqq--AvdTI~LLQmEieELKEknn~l~~e~q~------~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 5 VFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQN------AQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544544 3456777888988888877666655432 35544 456788999999999999999987
No 7
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.66 E-value=0.2 Score=39.50 Aligned_cols=69 Identities=29% Similarity=0.352 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
-||+-+|.=|-+ +-|.+.-+|.|...||++-..|..|+.-++ +.| +..++|.++||+--..+|++||.
T Consensus 4 EvleqLE~KIqq--AvdtI~LLqmEieELKekn~~L~~e~~~~~------~~r----~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 4 EVFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQNAQ------HQR----EELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556655544 445677789999999999888888876543 333 34578899999999999999998
Q ss_pred H
Q 024726 234 L 234 (263)
Q Consensus 234 L 234 (263)
|
T Consensus 72 L 72 (79)
T PRK15422 72 L 72 (79)
T ss_pred H
Confidence 7
No 8
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.78 E-value=0.71 Score=41.24 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=52.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRN-----------REVEYQKHMVSQYQEQLRTLEINNYA 240 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~-----------~E~q~Lkqlv~qyqEqir~LE~~NYa 240 (263)
+..++-+...++..++.+.+||.+||+.=.-|---...|++-+ .|+..|+..+-.|++++++++...=-
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999997766666666776544 55555666666666666665554443
Q ss_pred HHHHH
Q 024726 241 LSMHL 245 (263)
Q Consensus 241 L~~HL 245 (263)
...+|
T Consensus 94 ~~~el 98 (194)
T PF15619_consen 94 KDEEL 98 (194)
T ss_pred HHHHH
Confidence 33333
No 9
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=94.53 E-value=0.88 Score=39.64 Aligned_cols=77 Identities=26% Similarity=0.293 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-hHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024726 153 SRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHE-RQKDYEN-RNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 153 sRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQhe-R~~e~e~-~~~E~q~Lkqlv~qyqEq 230 (263)
=+|||.||.++..+... .-|...|++..+.|..+..- ++...-|-+ +.-++++ -.+|.+.|...|++.|++
T Consensus 32 V~vLE~Le~~~~~n~~~------~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e 104 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH------EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEE 104 (158)
T ss_pred HHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999888876543 33556666666666655543 223333322 3333333 456777787788888888
Q ss_pred HHHHHh
Q 024726 231 LRTLEI 236 (263)
Q Consensus 231 ir~LE~ 236 (263)
.|.|+.
T Consensus 105 ~r~L~~ 110 (158)
T PF09744_consen 105 NRQLEL 110 (158)
T ss_pred HHHHHH
Confidence 888883
No 10
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.33 E-value=0.21 Score=32.44 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.9
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
..|.+|..+ +.+.+.+..||+.|++|++.|+.-|.
T Consensus 3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 457788887 67799999999999999999998764
No 11
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=93.23 E-value=0.21 Score=32.29 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHH
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKL 83 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 83 (263)
..|.+|..+ +.++.....+|+.||+|++.|+.-|
T Consensus 3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788888 7888999999999999999998765
No 12
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=93.15 E-value=0.77 Score=37.78 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 188 TVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 188 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
.|--+|.+||+||-- .+.++ ..|+.-+-+....||++|+.|-+|.+|-+|=
T Consensus 9 KLraQ~~vLKKaVie-------EQ~k~---~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL 59 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIE-------EQAKN---AELKEQLKEKEQALRKLEQENDSLTFRNQQL 59 (102)
T ss_pred HHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567999999972 22232 3355567778888999999999999988773
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.87 E-value=1.8 Score=33.18 Aligned_cols=62 Identities=39% Similarity=0.438 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
.+|+-+|.=|.+ +-+....++.|+..||++-..|..+|.-|+ +|.++|++--...+++|+.
T Consensus 4 E~l~~LE~ki~~--aveti~~Lq~e~eeLke~n~~L~~e~~~L~-----------------~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 4 ELLEQLEEKIQQ--AVETIALLQMENEELKEKNNELKEENEELK-----------------EENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 356666666654 334566688888888877766665555554 4444555555555555555
Q ss_pred H
Q 024726 234 L 234 (263)
Q Consensus 234 L 234 (263)
|
T Consensus 65 L 65 (72)
T PF06005_consen 65 L 65 (72)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=91.98 E-value=3.3 Score=32.64 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHh-h---HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 156 LEILEKSIMARA-S---DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQL 231 (263)
Q Consensus 156 LEafEksi~~ra-~---ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqi 231 (263)
.+.+.+++..|. . -+..-.+.++...++.+++.+..+.+.+-+.|+.--.-..+.+....|+..+|.-+..+++++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777773 2 333445667888899999999999998888888765443577888899999999999999999
Q ss_pred HHHHhhhHHHH
Q 024726 232 RTLEINNYALS 242 (263)
Q Consensus 232 r~LE~~NYaL~ 242 (263)
+.+|..-+.+-
T Consensus 91 ~~~e~~l~~~l 101 (108)
T PF02403_consen 91 KELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998766653
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.87 E-value=3.2 Score=37.52 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQH---ERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQh---eR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
+++|...|+.++..+..+..- +.-.+|. ++.+...+...|.++|++-+.+.+.+++.||..|-.+.-..+
T Consensus 98 le~el~~l~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQ--RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555331 1111121 233344446777888888899999999999999988875443
No 16
>PF15058 Speriolin_N: Speriolin N terminus
Probab=91.56 E-value=0.27 Score=44.59 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRA 199 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRA 199 (263)
+=.||+.||+|+ +|++||.-||||
T Consensus 17 Lv~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 17 LVRENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred HHhhhHHHHHHH-HHHHHHHHHHHH
Confidence 445777777777 677777777777
No 17
>PHA02047 phage lambda Rz1-like protein
Probab=91.55 E-value=1.2 Score=36.59 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=47.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC-CCCCC-CCCCC
Q 024726 197 KRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSS-SIPGR-FHPDV 262 (263)
Q Consensus 197 KRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~-s~~g~-~~PDV 262 (263)
.|+..|=|++-+.. .+.+.+++.-+..||+||..||.+--.=+--+++|-..+ +-.+. -||+|
T Consensus 26 ~r~~g~~h~~a~~l---a~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPpaV 90 (101)
T PHA02047 26 YRALGIAHEEAKRQ---TARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPPAV 90 (101)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHH
Confidence 57888889877666 566888999999999999999999888888888887643 33333 35554
No 18
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=89.90 E-value=0.59 Score=37.96 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=29.4
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHER 206 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR 206 (263)
...++|+..|+.+++.|..||.|||+|..|=..|
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3468899999999999999999999999886433
No 19
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.32 E-value=14 Score=33.62 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhHHHH--HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHH
Q 024726 153 SRVLEILEKSIMARASDEAA--QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENR----NREVEYQKHMVSQ 226 (263)
Q Consensus 153 sRvLEafEksi~~ra~ae~~--~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~q~Lkqlv~q 226 (263)
..|.+.|||.|....+.... ...+.+...+....+.+..+-.-+-++|.=.|.|..-+.+- ..-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46899999998885544211 11222344444455556666677889999888886644321 1112347888999
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 024726 227 YQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 227 yqEqir~LE~~NYaL~~HL~ 246 (263)
|.+.|+..|+..-+|.-|-.
T Consensus 123 y~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999854
No 20
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.23 E-value=12 Score=33.52 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=47.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
+..+..||..|.+=|..+..|+.-|++-+. .|+.-...++.+|.-+...+++|+.|+..+-.|.....+.+
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~-------~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLK-------NYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777776654 23323344777777777778888888877777776665543
No 21
>PLN02678 seryl-tRNA synthetase
Probab=89.11 E-value=7.4 Score=39.01 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcC
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQS 251 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~ 251 (263)
.-.+-+|...++.+++.|..+.+.+-+.++.=..-..+.++..+|+++||+-+.+.+++++.+|..-+.+-.
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~-------- 106 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK-------- 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334556667777777777777777777776422222355566778888888888888888888887775433
Q ss_pred CCCCCCCCCCC
Q 024726 252 SSIPGRFHPDV 262 (263)
Q Consensus 252 ~s~~g~~~PDV 262 (263)
.+|-..||||
T Consensus 107 -~iPNi~~~~V 116 (448)
T PLN02678 107 -TIGNLVHDSV 116 (448)
T ss_pred -hCCCCCCccC
Confidence 2455566665
No 22
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.18 E-value=4.5 Score=38.68 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhHHHH-------HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024726 178 ENATLKEQIETVIRENSILK-------RAVAIQHERQKDY-ENRNREVEYQKHMVSQYQEQLRTLEINNYALSM 243 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLK-------RAv~IQheR~~e~-e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~ 243 (263)
+...++.+...|..+|+-|+ --+--||-..-.. .....++.|++.+.+|.++.||.||+.|.-|--
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444455555555555444 3333333222111 124478899999999999999999999987743
No 23
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=87.90 E-value=9.4 Score=37.61 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMH 244 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~H 244 (263)
..-.+-++-..++.+++.|.++.+.+-+.++.-.....+.+....|..+||+-+.+..++++.+|..-+.+-++
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445667777888888888888888777765221222455556677777777777777777777766555443
No 24
>PRK11637 AmiB activator; Provisional
Probab=87.24 E-value=30 Score=33.62 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=4.4
Q ss_pred HhcCCCcHH
Q 024726 139 MTSATSMDD 147 (263)
Q Consensus 139 M~~Asd~dD 147 (263)
+.++.++++
T Consensus 145 Ll~a~~~~~ 153 (428)
T PRK11637 145 ILSGEESQR 153 (428)
T ss_pred HhcCCChhH
Confidence 345555533
No 25
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=87.23 E-value=6.9 Score=37.06 Aligned_cols=66 Identities=24% Similarity=0.274 Sum_probs=45.5
Q ss_pred HHHhhHHHHHh--------cHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 164 MARASDEAAQS--------FQKENATLKEQIETVIRENSILKR----AVAIQHERQKDYENRNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 164 ~~ra~ae~~~~--------~~~E~~~lk~ql~~l~~eN~iLKR----Av~IQheR~~e~e~~~~E~q~Lkqlv~qyqEq 230 (263)
..|++|+.+.. +..|++.|-+.-+.|..||..|.+ .++-||+--.+++..++||..||| --||+..
T Consensus 76 KNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~-~~~~~~~ 153 (292)
T KOG4005|consen 76 KNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ-QQQHNTR 153 (292)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH-HHHHhhH
Confidence 34666655543 334566677777777777777754 578889888899889999999888 3344433
No 26
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=87.11 E-value=13 Score=29.36 Aligned_cols=83 Identities=24% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024726 142 ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQK 221 (263)
Q Consensus 142 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lk 221 (263)
...+++|-.|=.+.|..||++|..|-...... ..+.+.++.|..+..-|-..+--.-.|....+.-+.|+.+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~-- 74 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR-- 74 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH--
Confidence 45788999999999999999999987763321 4566667777777777777777777777777777777655
Q ss_pred HHHHHHHHHHHH
Q 024726 222 HMVSQYQEQLRT 233 (263)
Q Consensus 222 qlv~qyqEqir~ 233 (263)
-+.-..|.||.
T Consensus 75 -rL~~a~e~Ir~ 85 (89)
T PF13747_consen 75 -RLDSAIETIRA 85 (89)
T ss_pred -HHHHHHHHHHH
Confidence 45555666654
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.97 E-value=8.1 Score=33.25 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=49.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
.+-++|+..|+++++.+..+.+-|.- |+..-..|...|.+.+.+-|++|..||..|..+.-||+-..
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~----------EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLEL----------ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44567778888888888877776653 33334466666777788889999999999999998887644
No 28
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=86.69 E-value=12 Score=36.73 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=38.3
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKD-YENRNREVEYQKHMVSQYQEQLRTLEINNYALSM 243 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e-~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~ 243 (263)
-.+-++-..++.+++.|..|.+.+-+.++.--....+ .+....+..+||+-+.+++++++.+|..-+.+-+
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777766666666441111112 3444455666666566666666655555444433
No 29
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.52 E-value=19 Score=34.30 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 212 NRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 212 ~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
..+.|++.|+.-+...++|+.+|+..|
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334555555555555556666665544
No 30
>PF15058 Speriolin_N: Speriolin N terminus
Probab=86.49 E-value=1.7 Score=39.59 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024726 179 NATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQ 226 (263)
Q Consensus 179 ~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~q 226 (263)
++.|.+|+++|.+||.=||+-|..- +|.+.||.++.|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi-----------rEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI-----------RENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4568899999999999999998765 456667776444
No 31
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.28 E-value=23 Score=31.33 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 179 NATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 179 ~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
...++.++..|..++.-|+.-+.-.-.+....+.+..|..+ .....+++.|.-|..+|--|+-+|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777788888888888887777665555555544444444 24577899999999999999888864
No 32
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=85.68 E-value=12 Score=32.05 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYEN-RNREVEYQKHMVSQYQEQLRTLEINNYALSM 243 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~ 243 (263)
+...+..++.+-..+..-|+-|.++ .++-++...++. ..+++.+...++.+.+.+|+.|...|-.|+-
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4444455555555555555555554 555555554443 4577888888999999999999999998864
No 33
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=84.95 E-value=1.9 Score=29.31 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 49 LLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 49 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+|.++..+- +.++.+-...|+.|+.||+.||..+.+
T Consensus 3 ~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456666666 569999999999999999999988765
No 34
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.89 E-value=29 Score=31.41 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=35.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024726 170 EAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVE 218 (263)
Q Consensus 170 e~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q 218 (263)
+..+.+..|...|+.+++.|...|.-|++-|.-|++...+.+.+..++.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888888888888888888777777765554444
No 35
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.42 E-value=45 Score=37.13 Aligned_cols=78 Identities=28% Similarity=0.375 Sum_probs=58.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHH------------------HHHHHHhHHH---------------------
Q 024726 169 DEAAQSFQKENATLKEQIETVIRENSILKRA------------------VAIQHERQKD--------------------- 209 (263)
Q Consensus 169 ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRA------------------v~IQheR~~e--------------------- 209 (263)
.|-++.+|.|..++||+++.|.-+--|||-= +-+||.|++|
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK 403 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4455779999999999999999888888852 4577777654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 210 -YENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 210 -~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
.|.++.|+..|++.-+-.+.++-.+|-..--|.-..-
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888777777777777776666654443
No 36
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.86 E-value=12 Score=31.85 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=44.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 169 DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 169 ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+....+..|+..|++++..+..++..|+.-+..-......- +...++.+|++-+.++++++..|..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777777778777777777776666665444322 4556677777777777777777765
No 37
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=80.80 E-value=21 Score=28.84 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
...+..||+...+.+..-..-|.-|+..+.+.+.-.. ..++.-+++++--++++|+||+...+|
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~---~~~~~~qq~r~~~e~~~e~ik~~lk~d 90 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVE---EQQKREQQLRQQSEERRESIKTALKDD 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4556677777777777777777777776665433222 334445667778899999999876654
No 38
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.34 E-value=10 Score=34.51 Aligned_cols=63 Identities=30% Similarity=0.372 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-HhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQH-ERQKDYENRNRE--------VEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~E--------~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
|+.+||+-.++|..||+=|+-.-.+.- .|+|--. ..+| -.-++|-|.+||.+|+.||..--.|
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888889888876655542 2333221 1222 2235677888999998887665444
No 39
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=80.33 E-value=27 Score=30.87 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHhcCCCcHHHHHHHHHHH---HHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHH---
Q 024726 127 NGAEWVELFVKEMTSATSMDDARARASRVL---EILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAV--- 200 (263)
Q Consensus 127 ~g~eWVEl~V~EM~~Asd~dDAraRAsRvL---EafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv--- 200 (263)
+--+|++++.+-..+.-.+.|-+.+..==| +...+ ...+..+-..-+......+.++++.|.+.-..+-.-|
T Consensus 41 ~dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~--G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY 118 (175)
T PRK13182 41 EDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTI--VQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY 118 (175)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 445899999999999999999988663111 00000 0000011112233333344444444433333332222
Q ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024726 201 -AIQHERQKDYENRNREVEYQKHMVSQYQ 228 (263)
Q Consensus 201 -~IQheR~~e~e~~~~E~q~Lkqlv~qyq 228 (263)
..||. .|.|++...++.|.+.+.+-+
T Consensus 119 qll~hr--~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 119 QLLQHR--REMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 23564 377888888888877777633
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.73 E-value=34 Score=28.47 Aligned_cols=101 Identities=24% Similarity=0.232 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH--------HHHHH
Q 024726 145 MDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYE--------NRNRE 216 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e--------~~~~E 216 (263)
|-.-|.|-....|.++.-+..-.+. ...++..+..|+++++.+.++...++.-..-.....+..+ +.++-
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d--~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSD--IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888777664333 2335555666666666666655544433322222222111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
...+.+...||.-.||+-|...-.|.-+|.+
T Consensus 121 k~~~~~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 121 KNQLQQRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2255577789999999999999888887753
No 41
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.70 E-value=16 Score=37.22 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIR 191 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~ 191 (263)
+.++|+.||++.++|.+
T Consensus 78 l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 78 LISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=79.39 E-value=85 Score=32.81 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=19.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 024726 135 FVKEMTSATSMDDARARASRVLEILEKSIMA 165 (263)
Q Consensus 135 ~V~EM~~Asd~dDAraRAsRvLEafEksi~~ 165 (263)
++.++......+.+..++..+...++..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777776666666665544
No 43
>PLN02320 seryl-tRNA synthetase
Probab=79.22 E-value=29 Score=35.51 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=34.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
..-.+.++...++.+++.|..|.+-+-+.+.. ..-..+.+...+|...||+-+....++++.+|..
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777777777776666666643 1111233344445555555444444444444443
No 44
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.90 E-value=36 Score=28.16 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYEN-----------RNREVEYQKHMVSQYQEQLRTLEINNYALSM 243 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~-----------~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~ 243 (263)
++.|...++++...+..+-..++.=+..|+.+-++.+. -.++++.||.-+.+++.+|..|+..-.+...
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555544332 1356667777777777777777777776666
Q ss_pred HHHHhh
Q 024726 244 HLKQAQ 249 (263)
Q Consensus 244 HL~qA~ 249 (263)
-|.++.
T Consensus 88 ~l~~~e 93 (132)
T PF07926_consen 88 ELEESE 93 (132)
T ss_pred HHHHHH
Confidence 665544
No 45
>PRK09039 hypothetical protein; Validated
Probab=78.84 E-value=41 Score=32.40 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 024726 145 MDDARARASRVLEIL--EKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDY 210 (263)
Q Consensus 145 ~dDAraRAsRvLEaf--Eksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~ 210 (263)
...+..|+...=+.+ +|.+.+.+.++ +..++.|+..||.|+..|..+-..++.--.-++.+..++
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~-V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQ-VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665543333 23333334442 334555555555555555555555555444444444444
No 46
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.13 E-value=18 Score=36.93 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
+.+|...|..+-+.|..||.-||+
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666654
No 47
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.51 E-value=13 Score=41.58 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=54.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 169 DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEY-QKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 169 ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~-Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
+.....+.+|...|.+||+. |=+.|-. +++++-+|... .+++-..|+|+||.+|.-|-.++-||..
T Consensus 363 arvirElReEve~lr~qL~~----------ae~~~~~---el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~ 429 (1714)
T KOG0241|consen 363 ARVIRELREEVEKLREQLEQ----------AEAMKLP---ELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLES 429 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------hhhccch---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777776654 3333433 34444444433 3566778999999999999999999999
Q ss_pred hhcCCCCCCCCCC
Q 024726 248 AQQSSSIPGRFHP 260 (263)
Q Consensus 248 A~~~~s~~g~~~P 260 (263)
+..+--.+|.|+-
T Consensus 430 ~gis~~~sgikv~ 442 (1714)
T KOG0241|consen 430 MGISLENSGIKVG 442 (1714)
T ss_pred HHHHHhccccccc
Confidence 9877667777653
No 48
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=2.6 Score=39.63 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.7
Q ss_pred hCCCCCHHHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 56 FFPQLEPQLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 56 lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
+||.||-+++|-||++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 69999999999999998889999999998765
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=76.45 E-value=1.1e+02 Score=32.31 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=35.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
..++.+...+++++..+..+..-|++-+.--+.+.++++...+++..+..-+...++++..+|
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e 271 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666655556666665555555444444444444444443
No 50
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=76.10 E-value=2 Score=40.60 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=23.2
Q ss_pred HHhhCC-CCCHHHHHHHHHHhcccHH
Q 024726 53 LRAFFP-QLEPQLLERALEECNADLD 77 (263)
Q Consensus 53 L~~lFP-~md~q~le~aLe~cgndlD 77 (263)
|.+.|| .|++++.|+.+..||||+=
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~i 29 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDII 29 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccchh
Confidence 789999 8999999999999999974
No 51
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.88 E-value=34 Score=30.96 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
..+++..|...|+.+++.+.+|...|+. ++++++.+ +..+++-++..++||..++...=.|.=.+.+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~~~------v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEV----YNEQLERQ------VASQEQELASLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888876 33333332 5555556666677777777666555554444
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.05 E-value=77 Score=30.02 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=40.8
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 174 SFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
--+.|...+|++|..+..+..-+|+-+.-.....++. +.++..++....+++++|..+|
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l---~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEEL---EEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888888888888887776665444444 4445556666777777777766
No 53
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=74.79 E-value=62 Score=31.66 Aligned_cols=83 Identities=22% Similarity=0.222 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
.-++.+++.+..-... .......|...+..+...|..+-..+|.-+..=.+.+.+|.+.++|++-.+++..+|-.+.+.
T Consensus 320 ~q~~~~~~~~~~e~~~-~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 320 AQLAELRQQIAAELRQ-ILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555443332 233345567788889999999999999999998889999999999999999998888888877
Q ss_pred HHhh
Q 024726 234 LEIN 237 (263)
Q Consensus 234 LE~~ 237 (263)
+...
T Consensus 399 ~~~~ 402 (458)
T COG3206 399 LSIQ 402 (458)
T ss_pred HHHh
Confidence 7654
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.47 E-value=39 Score=29.56 Aligned_cols=78 Identities=26% Similarity=0.296 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 153 SRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLR 232 (263)
Q Consensus 153 sRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir 232 (263)
..-|+.+++.+...... ...+..|+..|++.+..+..+-.-+.+++.+. +-|+.-|.--+...+++++
T Consensus 101 ~~~l~~l~~~~~~~~~~--l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l----------~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 101 NDELQELEKELSEKERR--LAELEAELAQLEEKIKDLEEELKEKNKANEIL----------QDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp -------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 33455555555554433 44466666777666666666666666665554 3444444445566678888
Q ss_pred HHHhhhHHHH
Q 024726 233 TLEINNYALS 242 (263)
Q Consensus 233 ~LE~~NYaL~ 242 (263)
.||.-|--|-
T Consensus 169 ~l~~En~~Lv 178 (194)
T PF08614_consen 169 KLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887663
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.47 E-value=40 Score=35.05 Aligned_cols=73 Identities=22% Similarity=0.268 Sum_probs=34.6
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 174 SFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRN----REVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~----~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
.+..++..+....+.+..|+..|+.-..-+-.|..++++.. +......+++.++++-...+|+.+.-|.-+|+
T Consensus 189 ~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk 265 (546)
T PF07888_consen 189 QLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLK 265 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555556666555555555555554322 22233333444444444445555544444444
No 56
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=74.32 E-value=21 Score=37.80 Aligned_cols=73 Identities=27% Similarity=0.288 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 024726 134 LFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENR 213 (263)
Q Consensus 134 l~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~ 213 (263)
..|+||. |-+++--+|..|--+.. |+++.|+..+...+|.+.+ ....+
T Consensus 79 r~~~e~~--------RI~~sVs~EL~ele~kr-------qel~seI~~~n~kiEelk~-----------------~i~~~ 126 (907)
T KOG2264|consen 79 RILREQK--------RILASVSLELTELEVKR-------QELNSEIEEINTKIEELKR-----------------LIPQK 126 (907)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHH-----------------HHHHh
Confidence 4567763 66777777777654432 5577777777766665543 34457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
++|+.+||-.++|.|-|.+.|-++|
T Consensus 127 q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 127 QLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 8999999999999999999987666
No 57
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.29 E-value=65 Score=33.80 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=51.3
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
..++.|.+.--++++.|..+|.-||.-|..|.==-.|.+.+++|+.+|++-|..-+-++-.|-..-
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777889999999999999999976677999999999999988876665555554433
No 58
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.16 E-value=42 Score=34.37 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 220 QKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 220 Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
+|..+..++++|.-|+..--=|-+||-
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 344555666666666655555555553
No 59
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=73.84 E-value=21 Score=32.44 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=39.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 170 EAAQSFQKENATLKEQIETVIR-------ENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 170 e~~~~~~~E~~~lk~ql~~l~~-------eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
+.-+.+..++..|.+++..|.. |-..|-.++.| ++++.+.+.|+..|..|.|+|+.+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666654 34455555544 4677888999999999999998774
No 60
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=73.72 E-value=36 Score=26.04 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-------hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 024726 182 LKEQIETVIRENSILKRAVAIQHE-------RQKDYENRN-REVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQhe-------R~~e~e~~~-~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
+.+++..|+.||.-||-|+.-=|. -+..+.+.+ .|..-++.-+....+-|.+|...
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456788899999999988764332 222222333 23333444455555555555443
No 61
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.68 E-value=58 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024726 188 TVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMV 224 (263)
Q Consensus 188 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv 224 (263)
.+..||..||+=++....+..+++...+|.++||+++
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444433333333344444455566666544
No 62
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.96 E-value=21 Score=36.44 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
.|.....|+++|+.+.+|..++++
T Consensus 74 qQ~kasELEKqLaaLrqElq~~sa 97 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNK 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566677777777555554444
No 63
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=72.72 E-value=23 Score=34.63 Aligned_cols=71 Identities=31% Similarity=0.430 Sum_probs=50.6
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQK--DYENRNREVEYQKHM----------VSQYQEQLRTLEINNYA 240 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~--e~e~~~~E~q~Lkql----------v~qyqEqir~LE~~NYa 240 (263)
+.+|-.|-.|+.||+.-..||.||-+. .||+ |.|...|-+++|... |-.||-|+..|-..--.
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~-----hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrt 77 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKM-----HRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRT 77 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999875 3555 566666666666543 45688777666555555
Q ss_pred HHHHHHHh
Q 024726 241 LSMHLKQA 248 (263)
Q Consensus 241 L~~HL~qA 248 (263)
|---|-.|
T Consensus 78 LeRELARa 85 (351)
T PF07058_consen 78 LERELARA 85 (351)
T ss_pred HHHHHHHh
Confidence 55555544
No 64
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=71.78 E-value=3.2 Score=27.97 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 60 LEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 60 md~q~le~aLe~cgndlDaAIksL~ 84 (263)
++.++|+.+|+.||.++..|-+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999988774
No 65
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.70 E-value=5.3 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=21.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHhHHHHHH
Q 024726 170 EAAQSFQKENATLKEQIETVIRENSILKRA 199 (263)
Q Consensus 170 e~~~~~~~E~~~lk~ql~~l~~eN~iLKRA 199 (263)
|+.+.++.-+..|.++...|..||.+||.-
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777777777777888887753
No 66
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.52 E-value=64 Score=31.25 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH-------HHHH
Q 024726 143 TSMDDARARASRVLEILEKSIMARAS-DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDY-------ENRN 214 (263)
Q Consensus 143 sd~dDAraRAsRvLEafEksi~~ra~-ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~-------e~~~ 214 (263)
..+++|....+.+=+.+.+-...... -+.+..+.-+...|+..+..+.-||-=|..-+.+=++.+..+ +++-
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655554444322 223334555556666666666667665555555444443333 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
.|+.. ++...||++|+|...|
T Consensus 286 ~E~~~---mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 286 AECMA---MLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHH---HHHHHHHHHHHhhCCC
Confidence 33333 5667888888886544
No 67
>CHL00098 tsf elongation factor Ts
Probab=70.67 E-value=7.3 Score=35.16 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
.+|-.||.. -+-.-.--.+||++||+|+|.||.-|..--+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~ 42 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGL 42 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 345666665 3344444789999999999999999988433
No 68
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.40 E-value=79 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQK 208 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~ 208 (263)
+..|...++.++..+..+..-+|+.+..-.+|..
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444433333
No 69
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.63 E-value=1e+02 Score=29.26 Aligned_cols=113 Identities=23% Similarity=0.371 Sum_probs=70.7
Q ss_pred CChhhHHHHHHHHHhcCCCcHHHHHHHHHH------------HHHHHHHHHH---HhhHHHHH------hcHHHHHHHHH
Q 024726 126 QNGAEWVELFVKEMTSATSMDDARARASRV------------LEILEKSIMA---RASDEAAQ------SFQKENATLKE 184 (263)
Q Consensus 126 ~~g~eWVEl~V~EM~~Asd~dDAraRAsRv------------LEafEksi~~---ra~ae~~~------~~~~E~~~lk~ 184 (263)
..|-+..+.|-.|+..-.. +--|| ++..+|-+.. ||+-...+ .++.-...+|+
T Consensus 69 ~~GReLA~kf~eeLrg~VG------hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~ke 142 (290)
T COG4026 69 RVGRELAEKFFEELRGMVG------HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKE 142 (290)
T ss_pred chhHHHHHHHHHHHHHhhh------hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 4677888888666542110 11111 3344443333 45544444 56677788999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 185 QIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 185 ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
.++.+++||.-|-.-+ .+-+.+|++-+.++..|..-.++..|..|.|+-.-|-|.-.+-.
T Consensus 143 kl~E~~~EkeeL~~el---eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 143 KLEELQKEKEELLKEL---EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 9999999987553322 12224777777778888778888888888888777877765543
No 70
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=69.60 E-value=1.2e+02 Score=30.05 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCcchHHHHHHhhC----CCCCHHHHHHHHHHhcccHHHHHHHHhhhcccc
Q 024726 33 PSKFTPPPPPTTTAPQLLDRLRAFF----PQLEPQLLERALEECNADLDSTIKKLNELCSRS 90 (263)
Q Consensus 33 p~r~~~~~~~~~~~~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~~ 90 (263)
-.||.+- ..++.+..|+.+= =+||+..+..+++-||+||-.||--|-+|.+.+
T Consensus 182 KfrFk~L-----~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 182 KFRFKKL-----KDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhcCCCc-----chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 4667763 3367788888775 479999999999999999999999999988743
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=69.19 E-value=1.2e+02 Score=29.84 Aligned_cols=65 Identities=8% Similarity=0.165 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NY 239 (263)
.+.++..++.++..+..+-..+++.+.-+-+..+ +.++...++..+...+.+++.++..|+..-.
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~ 244 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELL 244 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544443333322111 1223334444444444444444444444433
No 72
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=69.16 E-value=52 Score=28.73 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=42.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVE-YQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q-~Lkqlv~qyqEqir~LE 235 (263)
+.+..|...|..+++.|..+|.-|..-+.-.+....-++++..++. .++.+...|.+-|+++-
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998555554544444444344432 45566667777666653
No 73
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=68.89 E-value=23 Score=27.26 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 203 QHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 203 QheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
-..|.++.+.+++++.+|++-.-+-+--++.|+..-+.+..|+|.+++
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~E 72 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQE 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHH
Confidence 456888888999999999988888889999999999999999998854
No 74
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=68.61 E-value=90 Score=34.60 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHH--hhHHHHHhcHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHhH--HHHHHH
Q 024726 154 RVLEILEKSIMAR--ASDEAAQSFQKENATLKEQIETVIRENSIL----------------KRAVAIQHERQ--KDYENR 213 (263)
Q Consensus 154 RvLEafEksi~~r--a~ae~~~~~~~E~~~lk~ql~~l~~eN~iL----------------KRAv~IQheR~--~e~e~~ 213 (263)
+.|+.+-+++.+. -..++.+-++.||+.|+.|...+..+-.-- ||+-+.-+-|. .-.+.-
T Consensus 298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv 377 (1265)
T KOG0976|consen 298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV 377 (1265)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555555442 124566778888888887765543221111 12222211111 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINNYALSMH 244 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~H 244 (263)
..|+|.|+.+-++-||||--|.-..+.|.+-
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4678889999999999999999888888877
No 75
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.31 E-value=12 Score=38.52 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=32.7
Q ss_pred CCcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 44 TTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 44 ~~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+.....|+.|..+ +.+.-.-+.|||.-||++|-|++.|..
T Consensus 427 ~vd~~~la~Lv~m--GF~e~~A~~ALe~~gnn~~~a~~~L~~ 466 (568)
T KOG2561|consen 427 QVDGISLAELVSM--GFEEGKARSALEAGGNNEDTAQRLLSA 466 (568)
T ss_pred ccchhhHHHHHHh--ccccchHHHHHHhcCCcHHHHHHHHHH
Confidence 3445667888766 677778899999999999999999975
No 76
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.15 E-value=15 Score=31.13 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.5
Q ss_pred HhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 166 RASDEAAQSFQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 166 ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
.|-.|+.+.++.-+..|-++..+|.+||.+||+-+
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455667777778888888888888999988754
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.83 E-value=72 Score=26.70 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 024726 178 ENATLKEQIETVIRENSILK 197 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLK 197 (263)
|...||.++.++..+..-|-
T Consensus 31 E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 78
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.30 E-value=54 Score=29.68 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=25.6
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 174 SFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+..+...|++.++....+..=| .++++...+|++.++.-++..+.++.+++.
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~L----------~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 115 TWNQRTAEMQQKVAQSDSVINGL----------KEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666555433332211 123333445555555555555555555554
No 79
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=67.21 E-value=9.5 Score=34.32 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=31.5
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
..+|-.||.. -+....--.+||++|++|+|.||.-|..--+
T Consensus 5 a~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~ 45 (198)
T PRK12332 5 AKLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGL 45 (198)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 4567777776 3444455789999999999999999988543
No 80
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=66.78 E-value=56 Score=25.00 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 181 TLKEQIETVIRENSILKRAVAIQHERQKDYE----NRNREVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 181 ~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
.|+..|+.|.-.|..|-.+..+.|.+-.++- ..+...-.| ++.-+|+++++.++..=-+|
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999998887655442 334455566 77889999999988654443
No 81
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=65.61 E-value=18 Score=33.83 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=12.4
Q ss_pred HhcHHHHHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETV 189 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l 189 (263)
.++++||+.||+++..+
T Consensus 69 ~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 69 NNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44778888888777665
No 82
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=65.35 E-value=1.5e+02 Score=31.21 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHhHH--HHHHHHHHHHH
Q 024726 145 MDDARARASRVLEILEKSIMARASD-EAAQSFQKENATLKEQIETVIRENSILKRAVA--IQHERQK--DYENRNREVEY 219 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ra~a-e~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~--IQheR~~--e~e~~~~E~q~ 219 (263)
++|+-.-+.++=|-+++-+.+-+.- |...++--+...+|+.+-.+.+||..|+--+. |+-.|+- |+++.+-.-.+
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666554332 22333444556677777777777777665442 3333322 22222222233
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCCC
Q 024726 220 QKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHPD 261 (263)
Q Consensus 220 Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~s~~g~~~PD 261 (263)
+-+...+.||.|+.|. +--++++|.+-+...+- +|+|+
T Consensus 287 ~m~~~~EaeeELk~lr-s~~~p~~~s~~~~~~~~---~fp~~ 324 (596)
T KOG4360|consen 287 CMQMLHEAEEELKCLR-SCDAPKLISQEALSHGH---HFPQL 324 (596)
T ss_pred HHHHHHHHHHHHHhhc-cCCCcchhHHHHHHhhh---hCChh
Confidence 4456777777777774 45678899988886431 56554
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=65.29 E-value=1.1e+02 Score=32.04 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=9.4
Q ss_pred cccCCCCCCCCCcccccCC
Q 024726 12 FFEDLPSSPPVSKRVRCGS 30 (263)
Q Consensus 12 ~fedl~~spp~sKR~Rcss 30 (263)
+|-++..|=++..++-|.-
T Consensus 8 iF~nV~~~Y~P~~~v~C~Y 26 (546)
T PF07888_consen 8 IFNNVAKSYIPGTDVECHY 26 (546)
T ss_pred EEeccccccCCCCCeEEEE
Confidence 5666553333345555543
No 84
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.18 E-value=25 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=18.9
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
+.+..+...||.++..|+.||.-|+.
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888888877654
No 85
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=65.08 E-value=68 Score=25.44 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
.=+++.+.--+.=.+++..+..+++..-+.+++-.+||..||..-|.|--+.++
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555666667766667888888899998888888765543
No 86
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=64.61 E-value=71 Score=27.56 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 176 QKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVS----QYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~----qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
..|...||.||...-.+-.=||.. ..+.++.+.++..|+.-.. .|+.++..+.. ||||...|..|.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~-------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~al~~ak 95 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKS-------AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 456667777777666666666662 2344455555555555555 88888888876 899999998864
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.57 E-value=94 Score=32.63 Aligned_cols=41 Identities=29% Similarity=0.419 Sum_probs=29.3
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENR 213 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~ 213 (263)
..+++|...|.++++...++|.-|-+...-|-+|..+++..
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~ 130 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEE 130 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777777777777776643
No 88
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.16 E-value=26 Score=29.05 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.1
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
.+.+.+|...||.++..|+.||.-|+-
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788889999999999999988764
No 89
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.00 E-value=13 Score=28.04 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
.||.-||.-|...++++..||..|.-|+-+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677788888999999999999998887653
No 90
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=63.49 E-value=39 Score=28.21 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=22.3
Q ss_pred CCCChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 024726 124 FPQNGAEWVELFVKEMTSATSMDDARARASRVLEILEK 161 (263)
Q Consensus 124 ~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEk 161 (263)
.+.||..|++.|++| + +.=|.||+++=|-
T Consensus 49 ~~~DGd~fl~~L~~e-----~----~~LA~RIM~vR~~ 77 (111)
T PF02341_consen 49 PLQDGDAFLEALMRE-----N----QELALRIMEVREH 77 (111)
T ss_dssp TCSSHHHHHHHHHCC----------HHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH-----C----HHHHHHHHHHHHH
Confidence 467999999999999 1 4459999986443
No 91
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=63.04 E-value=14 Score=29.00 Aligned_cols=30 Identities=40% Similarity=0.450 Sum_probs=22.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~I 202 (263)
+.+++||..||+.|+.|..|-.-+||-+.|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457889999988888887777667766655
No 92
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.00 E-value=1.1e+02 Score=29.02 Aligned_cols=100 Identities=26% Similarity=0.434 Sum_probs=61.9
Q ss_pred CCCChhhHHHHHHHHHhcCCCcHHHHHHHHH-H--HHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHH----
Q 024726 124 FPQNGAEWVELFVKEMTSATSMDDARARASR-V--LEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSIL---- 196 (263)
Q Consensus 124 ~p~~g~eWVEl~V~EM~~Asd~dDAraRAsR-v--LEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iL---- 196 (263)
+...|+.--++|=+|+ ++-++|.+|.. - +.-+||+|.+. ......+...++.++..+..+..-|
T Consensus 129 it~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~a-----i~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 129 ITQRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEA-----IKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999998 56667766654 1 34477777763 3346667777777777776665544
Q ss_pred -----------HHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 197 -----------KRAVAIQHER---QKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 197 -----------KRAv~IQheR---~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
||-=..|+-| +.|||....||+. +-..|=++.|.|+
T Consensus 200 ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~---lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 200 EKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK---LYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHHHHhHH
Confidence 3333334333 3456555555444 4666666666654
No 93
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=62.46 E-value=9.7 Score=31.93 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 50 LDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 50 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
++-+..-+ +.+..-..+||++|++||-.||..|..
T Consensus 80 I~lv~~q~-gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 80 IELVAEQT-GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 44444433 455566789999999999999998853
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.74 E-value=24 Score=30.93 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
+++.+..+.++|-.+..++.-|+.-......+..++ ..++..|+.-+.+..+.|+-.+..|
T Consensus 86 l~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l---~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 86 LYRSKGELAQQLVELNDELQELEKELSEKERRLAEL---EAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ----------------------------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555444444444444 2334444444444444444444443
No 95
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.64 E-value=1.5e+02 Score=30.94 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 211 ENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 211 e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
...+.|+..+|..+....+.++.|-..|-.|.-+|..+-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345788999999999999999999999999999887654
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.44 E-value=1.6e+02 Score=28.33 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhHHHH
Q 024726 176 QKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI-------------NNYALS 242 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~-------------~NYaL~ 242 (263)
+.|...+|+.|..+..++...++=+....++.++. +..+...+....+++++|+.+|. +++-.+
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l---~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~ 279 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQEL---ESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ 279 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44778888888888888888887777776555555 44455566677788888887765 445555
Q ss_pred HHHHHhhc
Q 024726 243 MHLKQAQQ 250 (263)
Q Consensus 243 ~HL~qA~~ 250 (263)
++.-|...
T Consensus 280 ~~~Le~l~ 287 (312)
T smart00787 280 LKLLQSLT 287 (312)
T ss_pred HHHHHHHh
Confidence 55555543
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.22 E-value=1.6e+02 Score=28.07 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=37.4
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENR----NREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
+.+++|...|.++|..|.+|+.-|.+-........++.+.. -++...++.-+.++++....|+..--..+-||..-
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555444433222222211 13333344445555555566655555555565555
Q ss_pred hcCC
Q 024726 249 QQSS 252 (263)
Q Consensus 249 ~~~~ 252 (263)
...+
T Consensus 133 ~ktN 136 (314)
T PF04111_consen 133 RKTN 136 (314)
T ss_dssp HT--
T ss_pred HhcC
Confidence 4433
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.25 E-value=1.3e+02 Score=26.83 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=33.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
....+|...|+.++....++...|+.+-.....-.+++.+...|-..|.|-+.+-+..-..
T Consensus 65 ~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 65 KKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666555555555544444444444444444433333
No 99
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.16 E-value=99 Score=29.48 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.-..|.+|+.-+-..+..|-+||..+|+-+---+ ...-++..|...+..-+..++.|+..||-
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n---~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSN---KALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999998776655 24445567777777778888888888874
No 100
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=58.90 E-value=2.5e+02 Score=30.56 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
++.....++.+|..+.-||..|.+++ .+|-+-..+...+..+...-+.-.+.++..+|..|-+|+|-++
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777888899999999999988 4565656555666666666667778888888888988888765
No 101
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.77 E-value=2e+02 Score=32.47 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 175 FQKENATLKEQIETVIRE-NSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~e-N~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
+++|++.|.+++..|-.| |.+...+..+|+++.. ...+..+|+.-+.+++++|+.|..+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~----i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEH----IEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444332 4444556666655422 2355677888899999999999864
No 102
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=58.62 E-value=12 Score=31.52 Aligned_cols=26 Identities=42% Similarity=0.652 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 59 QLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 59 ~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
+.+..-..+||++|++||-.||-.|.
T Consensus 90 gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 90 NVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 34455567899999999999998774
No 103
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=58.30 E-value=8.1 Score=36.74 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=28.8
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
..+|-.||.. -+-.----.+||++|++|+|.||+-|..--+
T Consensus 5 a~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~ 45 (290)
T TIGR00116 5 AQLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESGI 45 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhch
Confidence 3456666655 1222223679999999999999999988443
No 104
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.15 E-value=70 Score=24.54 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.1
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
...++++|..|++..+.|..||.-||
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888
No 105
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=58.07 E-value=1.6e+02 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=28.1
Q ss_pred CCChhhH----HHHHHHH---HhcCCC-cHHHHHHHHHHHHHHHHHH
Q 024726 125 PQNGAEW----VELFVKE---MTSATS-MDDARARASRVLEILEKSI 163 (263)
Q Consensus 125 p~~g~eW----VEl~V~E---M~~Asd-~dDAraRAsRvLEafEksi 163 (263)
|.=.+.| .-+|..| |.-.-| +.+||.-|..||.+=++.=
T Consensus 19 ~iI~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~ 65 (224)
T PRK15354 19 NIIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQ 65 (224)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455899 6666668 765555 5789999999998766543
No 106
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.73 E-value=86 Score=27.76 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
+..|+..|+.++..+.....-+++...- .+..+.....-|+.-||+--.|...++++
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ek~~~e--~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQLEKREEE--LRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444443322 23333334566777777777776666654
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=57.67 E-value=28 Score=32.58 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH
Q 024726 186 IETVIRENSILKRAVAIQHERQKD-YENRNREVEYQKHMV 224 (263)
Q Consensus 186 l~~l~~eN~iLKRAv~IQheR~~e-~e~~~~E~q~Lkqlv 224 (263)
+..+.+||.-||+=++-.+.+++. +++..+|..+||+++
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666554433233332 222456666666644
No 108
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.51 E-value=1.1e+02 Score=25.41 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=45.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
....+..++..|+..+++|..++.-++|-+....++...... ++..+...+-.+.+.+.+|..
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~---~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK---QLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345566688888888888888888888888888777776643 344555566677777776653
No 109
>PRK09377 tsf elongation factor Ts; Provisional
Probab=57.34 E-value=8.1 Score=36.73 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=29.2
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
..+|-.||.. -+-.-.--.+||++|++|+|.||+-|..--+
T Consensus 6 ~~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~ 46 (290)
T PRK09377 6 AALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKGL 46 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhch
Confidence 3456666665 2233333679999999999999999988433
No 110
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=57.33 E-value=1.9e+02 Score=28.12 Aligned_cols=77 Identities=25% Similarity=0.252 Sum_probs=60.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
+--+.+.....+..+++|..|-...|..+.+==+|..+......-+++||.-..-+.+||.-||..-|-=.+....|
T Consensus 252 tyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrA 328 (336)
T PF05055_consen 252 TYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRA 328 (336)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888999999999999988777666665444455689999999999999999999988766655544
No 111
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=56.94 E-value=68 Score=27.44 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 024726 183 KEQIETVIRENSILKRAVA 201 (263)
Q Consensus 183 k~ql~~l~~eN~iLKRAv~ 201 (263)
.|.|+.+..||..||-|+.
T Consensus 84 dETI~~lk~EN~fLKeAl~ 102 (126)
T PF13118_consen 84 DETIEALKNENRFLKEALY 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3558899999999999975
No 112
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.67 E-value=1.6e+02 Score=29.12 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 145 MDDARARASRVLEILEKSIMARA--------SDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNRE 216 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ra--------~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E 216 (263)
+.++...+..-++.+++.+.-.- ... ..+...+.+.|+.++..+..+-..|..+..-.-+...++.....+
T Consensus 260 l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~-~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~ 338 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ-ISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777755321 110 011133445555555555555555555555333333333333334
Q ss_pred HHHHHHHHHHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQLR 232 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir 232 (263)
+..+++.+.+..+.|.
T Consensus 339 i~el~~~i~~~~~~i~ 354 (562)
T PHA02562 339 LLELKNKISTNKQSLI 354 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444433333333333
No 113
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=56.09 E-value=43 Score=27.57 Aligned_cols=91 Identities=16% Similarity=0.327 Sum_probs=43.3
Q ss_pred ChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 127 NGAEWVELFVKEMTSATSMDDARARASRVLEILEKSI---MARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 127 ~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEksi---~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
.|.++++-||++ .-...+++|..+--+++...-.+ ...+...+...+.+-..++.+++..++..-++-
T Consensus 23 k~~k~~~~LVkk--Ge~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~------- 93 (118)
T TIGR01837 23 EGSKFFNRLVKE--GELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIP------- 93 (118)
T ss_pred HHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCC-------
Confidence 456777777765 33445566666666665555222 112222122222222233333333222221111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 204 HERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 204 heR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
...|+..|+.-|++...+|+.|+
T Consensus 94 ---------tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 94 ---------SREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHh
Confidence 12456666666777777777765
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.96 E-value=1.6e+02 Score=33.71 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 175 FQKENATLKEQIETVIRENSILKR-AVAIQHERQKDYENR----NREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKR-Av~IQheR~~e~e~~----~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
..++++.|.+.++.+..+-..|+| =.+|-...+++++++ ..+.+.|+..+.+|+++++-++..|-.+.-+++..
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345555666666666666666664 111111234555433 34566677788888888888888888777776653
No 115
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.60 E-value=1.7e+02 Score=26.82 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=46.3
Q ss_pred HHhcHHHHHHHH-------HHHHHHHHHhHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024726 172 AQSFQKENATLK-------EQIETVIRENSILKRAV----AIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYA 240 (263)
Q Consensus 172 ~~~~~~E~~~lk-------~ql~~l~~eN~iLKRAv----~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYa 240 (263)
++.|+.||..|+ .+...|..+|.-||+=| .+=..|-....++++....|++.|.+|.-=...|....--
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~ 183 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSR 183 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666654444 44444445555555555 2223344455567777788888888887766666666666
Q ss_pred HHHHHHHhh
Q 024726 241 LSMHLKQAQ 249 (263)
Q Consensus 241 L~~HL~qA~ 249 (263)
|--+|.|++
T Consensus 184 LEeql~q~~ 192 (193)
T PF14662_consen 184 LEEQLSQMQ 192 (193)
T ss_pred HHHHHHhhc
Confidence 666666554
No 116
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=3.1e+02 Score=29.64 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC
Q 024726 179 NATLKEQIETVIRENSILKRAVAIQHERQKDYENR----NREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSI 254 (263)
Q Consensus 179 ~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~s~ 254 (263)
+..|.++.+.|...+.-|-+..+--++...+|.++ ..++.+|++-++..|--+-..-..+|.|-+||-.+......
T Consensus 50 ~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 50 FDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33444555555555555555555555555555443 36677777788888888888888899999999999876665
Q ss_pred CCCCC
Q 024726 255 PGRFH 259 (263)
Q Consensus 255 ~g~~~ 259 (263)
+|..+
T Consensus 130 ~~~~~ 134 (698)
T KOG0978|consen 130 YGNGN 134 (698)
T ss_pred CCCcc
Confidence 55443
No 117
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=54.70 E-value=43 Score=32.51 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=24.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
..++.|..+|++.+..+..++.+|+.-++-|
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4477788888888888888888888766654
No 118
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=54.47 E-value=98 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.|+|...+.+..+++-++..+.+|..||.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777777777777777777777777774
No 119
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.08 E-value=38 Score=35.21 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 200 VAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 200 v~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
..|-+.|.+|- +|+++|.--++-|=|+||-||..|-.|..-+.-...
T Consensus 31 s~ir~sR~rEK----~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 31 SPIRDSREREK----KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred hhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666665 789999999999999999999999999998877664
No 120
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=53.93 E-value=21 Score=26.73 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.1
Q ss_pred hhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 55 AFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 55 ~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
..-=+|-.+--++.||++|=|++.|++.+.+|.-
T Consensus 20 ~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 20 SAQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3446899999999999999999999999999874
No 121
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=53.62 E-value=22 Score=37.22 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKEN-ATLKEQIETVIRENSILKRAVAIQHERQKDYE 211 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~-~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e 211 (263)
.||.-..+.|..|-.|.+...-+||. ..|+..|.+|+.||.+||+-=+---.|+.++.
T Consensus 278 kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 278 KVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 36777778888888877777667765 56888888888888888876666655655553
No 122
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=53.57 E-value=1.3e+02 Score=27.27 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=12.6
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHH
Q 024726 174 SFQKENATLKEQIETVIRENSIL 196 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iL 196 (263)
++++||+.||+++..|..++.-+
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 73 DLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666555555555444
No 123
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=52.97 E-value=1.6e+02 Score=26.55 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NY 239 (263)
+++++..| ||.+=+=|.|||-.||..|-
T Consensus 138 qLe~ke~e---l~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 138 QLEEKEAE---LKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHHhhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34455555 56677889999999999873
No 124
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=52.65 E-value=46 Score=34.93 Aligned_cols=47 Identities=36% Similarity=0.461 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 149 RARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 149 raRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
|-|=...++.+|.=+-+--. +-+.+.+||..||.||+.+.+||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~--Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLS--ENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 33344456666655544222 235689999999999999999999986
No 125
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=52.60 E-value=46 Score=31.04 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 183 KEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQE 229 (263)
Q Consensus 183 k~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqE 229 (263)
+.++.-|.+||..|++-|. ...+|+..|+++..+|..
T Consensus 221 ~~r~~~leken~~lr~~v~----------~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVE----------QLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhcc
Confidence 3445555555555544332 224455555555555543
No 126
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=52.58 E-value=25 Score=35.73 Aligned_cols=55 Identities=27% Similarity=0.335 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYA 240 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYa 240 (263)
++..-|.++..... |.|+-+-+.+|- ||..++-.+. .++.+||.||+++|.+-|+
T Consensus 348 ~~V~~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n~------k~~~ey~~qL~~~E~~~~~ 402 (521)
T COG5296 348 KMVACKDEVHPKRS-NVIHEKTELRQK-RQRAIELKNK------KAAMEYQRQLEEIEDNEGA 402 (521)
T ss_pred HHHHHHHhcCccch-hHHHHHHHHHHH-HHHHHHccCH------HHHHHHHHHHHHHHHhhhc
Confidence 33444555554444 888888888884 6666654443 3799999999999998876
No 127
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=52.50 E-value=1.9e+02 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 024726 150 ARASRVLEILEKSIMARASDE 170 (263)
Q Consensus 150 aRAsRvLEafEksi~~ra~ae 170 (263)
+||-.|-..|-+-...-+..|
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA~~e 104 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLADVE 104 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 577788888877766656554
No 128
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.34 E-value=2.9e+02 Score=28.59 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=10.2
Q ss_pred CCCCcchHHHHHHhhC
Q 024726 42 PTTTAPQLLDRLRAFF 57 (263)
Q Consensus 42 ~~~~~~~~~~~L~~lF 57 (263)
+..++.++++.+...|
T Consensus 37 Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 37 NGAGKTTLLDAIQLAL 52 (650)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3346778888875544
No 129
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.33 E-value=36 Score=33.25 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=9.4
Q ss_pred HhcHHHHHHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVI 190 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~ 190 (263)
.++++||..||+++..|.
T Consensus 60 ~~L~~EN~~Lk~Ena~L~ 77 (337)
T PRK14872 60 LVLETENFLLKERIALLE 77 (337)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556655555554443
No 130
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.17 E-value=2e+02 Score=28.12 Aligned_cols=65 Identities=26% Similarity=0.380 Sum_probs=39.1
Q ss_pred CCCCCChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHH
Q 024726 122 SGFPQNGAEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRE 192 (263)
Q Consensus 122 ~~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~e 192 (263)
+.+|..|.-.-|+|-+|..-.-...-|-+|+--++|+ ||.... ++++++.+...++.+|..+.-+
T Consensus 70 t~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk~-----aIq~i~~~~q~~~~~Lnnvasd 134 (338)
T KOG3647|consen 70 TDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLKS-----AIQAIQVRLQSSRAQLNNVASD 134 (338)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHhhH
Confidence 3467888888888888877666666666665555543 343332 3444555555555555554433
No 131
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.88 E-value=2.4e+02 Score=30.19 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEINNYALSMH 244 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~H 244 (263)
...|+.+|+.-+-+-+|+++.||...-.|+++
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888899999999999888666665
No 132
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.85 E-value=1.3e+02 Score=30.14 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
.++..+|..-+.+|+.+++.||.+.
T Consensus 61 a~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 61 AQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999987
No 133
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=51.36 E-value=1.4e+02 Score=24.61 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc----HHHHHHHHHHHHHHHHHhHHHH
Q 024726 127 NGAEWVELFVKEMTS--ATSMDDARARASRVLEILEKSIMARASDEAAQSF----QKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 127 ~g~eWVEl~V~EM~~--Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~----~~E~~~lk~ql~~l~~eN~iLK 197 (263)
.|-+-++-++..+-. -+.+++.+.+|..-.+-+|+.+.++... +.+.+ ++|...|+.+|..|..+-.=|+
T Consensus 41 e~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~-~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 41 RGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQ-ALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444431 2346788888888888888888887654 33333 3577777777776666544443
No 134
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.32 E-value=1.3e+02 Score=24.76 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 212 NRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 212 ~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
....++..||+.+.+.-|.=.+|.+-|.-|+-+|.+..+
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446777788888888888888888888888888887654
No 135
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=51.25 E-value=2.2e+02 Score=26.85 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 024726 184 EQIETVIRENSILKRAVAIQHERQKDYENRN--REVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 184 ~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~--~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+|..|+.+..-+|+++.+||+..++.=.+. .||. .+=.+|++-.+..|.
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eve---K~Kk~Y~~~c~~~e~ 149 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIE---KLKSQYRSLAKDSAQ 149 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 6788899999999999999999988543322 2444 445578777766553
No 136
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.68 E-value=1.1e+02 Score=23.48 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024726 215 REVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
-|+..|++-+.+|+..|+.++.
T Consensus 50 ve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 50 VEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555543
No 137
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=50.35 E-value=3e+02 Score=28.26 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 024726 145 MDDARARASRVLEILEKSIMA 165 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ 165 (263)
+.+.+.|=.++.+.+++....
T Consensus 80 l~~~~~~l~~~~~~l~~~~~~ 100 (779)
T PRK11091 80 LEESRQRLSRLVAKLEEMRER 100 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554433
No 138
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.06 E-value=20 Score=29.77 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIR 191 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~ 191 (263)
+++||-+||.+++.|+.
T Consensus 84 LeEENNlLklKievLLD 100 (108)
T cd07429 84 LEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666655554
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.53 E-value=3.1e+02 Score=29.32 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 200 VAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 200 v~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
+..-+..-++++.+..++..|+.-+..-.+.|..||
T Consensus 466 ~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 466 VRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443333333333333
No 140
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=48.37 E-value=83 Score=28.83 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRE--NSILKRAVAIQHERQKDY-ENRNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~e--N~iLKRAv~IQheR~~e~-e~~~~E~q~Lkqlv~qyqEq 230 (263)
.+.+.||.++..+..-+...+.-+ +..+...+++++++ +.+-.-|.+|++.|.-.+ .+..++++.+++.+..|+++
T Consensus 180 ~a~Dl~E~~~as~~~y~~l~~~f~-~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 180 EAVDLFERALASHYDYEELREQFK-HSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred HHHHHHHHHHhccccHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 456788888888777655544333 44444445555444 234445788886665533 34556677777766666666
No 141
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=48.33 E-value=2e+02 Score=25.57 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024726 210 YENRNREVEYQKHMVSQYQEQL 231 (263)
Q Consensus 210 ~e~~~~E~q~Lkqlv~qyqEqi 231 (263)
..+.++|..+|+..+.+||.-+
T Consensus 72 i~~Lq~EN~eL~~~leEhq~al 93 (181)
T PF05769_consen 72 IRQLQQENRELRQSLEEHQSAL 93 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777776666443
No 142
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=47.90 E-value=83 Score=28.37 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 181 TLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQE 229 (263)
Q Consensus 181 ~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqE 229 (263)
.+..++..|+.|--.|..+|+-.|.|+.+. -+-.-|.+.+|||.
T Consensus 81 EmeK~~~~LL~EELkLqe~~A~e~~~~~~~-----~lleAkk~asqYQk 124 (176)
T PF06364_consen 81 EMEKNFVDLLSEELKLQEAVANENQRRADM-----ALLEAKKMASQYQK 124 (176)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 344566677888888999999888776554 25667888999994
No 143
>PRK03918 chromosome segregation protein; Provisional
Probab=47.88 E-value=3.5e+02 Score=28.34 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=5.5
Q ss_pred CcchHHHHHH
Q 024726 45 TAPQLLDRLR 54 (263)
Q Consensus 45 ~~~~~~~~L~ 54 (263)
+..++++++.
T Consensus 35 GKStil~ai~ 44 (880)
T PRK03918 35 GKSSILEAIL 44 (880)
T ss_pred CHHHHHHHHH
Confidence 5555556554
No 144
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=47.38 E-value=42 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 180 ATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 180 ~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
..||+|++.|..+-++|..+|.++
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777777655
No 145
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.37 E-value=1.7e+02 Score=30.70 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHhcCCCcHHHHHHHH----HHHHHHHHHHHH--HhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 024726 136 VKEMTSATSMDDARARAS----RVLEILEKSIMA--RASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKD 209 (263)
Q Consensus 136 V~EM~~Asd~dDAraRAs----RvLEafEksi~~--ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e 209 (263)
+.+|..+.-.-|-|-||. -.++++++.+.. +.-...+..++.|.+.-.++++.|....--||.-|.-|---..+
T Consensus 290 a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 290 AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 455666666666666664 355666666554 34455577788888888889999988888999999888666678
Q ss_pred HHHHHHHHHHHHHHHH
Q 024726 210 YENRNREVEYQKHMVS 225 (263)
Q Consensus 210 ~e~~~~E~q~Lkqlv~ 225 (263)
++.+++|..+|-.-++
T Consensus 370 fe~mn~Ere~L~reL~ 385 (622)
T COG5185 370 FELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887755443
No 146
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.31 E-value=1.9e+02 Score=25.57 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 216 EVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 216 E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
.++++++-+..+.+.+-+---|.|+|.-|++.-
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 355566666666667777777899999999873
No 147
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=46.60 E-value=1.7e+02 Score=28.46 Aligned_cols=70 Identities=29% Similarity=0.391 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENS-----ILKRAVAIQHERQKDYENRNRE-VEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~-----iLKRAv~IQheR~~e~e~~~~E-~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
++.|++||+..+..+..+|. .|+- +-|-.+...+++....= -.-|.+-|.||..|+..|-.-|--|.--|
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ed-iei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLED-IEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHH
Confidence 67778888777776654443 2221 22222333333211000 02366789999999999998888887666
No 148
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=46.31 E-value=1.1e+02 Score=27.44 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhH---H-HHHhcHHHHHHHHHHHHHHHHHhHHHHHH
Q 024726 144 SMDDARARASRVLEILEKSIMARASD---E-AAQSFQKENATLKEQIETVIRENSILKRA 199 (263)
Q Consensus 144 d~dDAraRAsRvLEafEksi~~ra~a---e-~~~~~~~E~~~lk~ql~~l~~eN~iLKRA 199 (263)
|+.|= --||.+|||.+.+.=-. . --+.+.+=+..+|+||-.++.|-+-||..
T Consensus 102 DItEL----DVvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 102 DITEL----DVVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred cchHH----HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 25899999998873111 0 00113333456777777777777776653
No 149
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.24 E-value=3e+02 Score=27.00 Aligned_cols=24 Identities=8% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHhcccHHHHHHHHhhhc
Q 024726 64 LLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 64 ~le~aLe~cgndlDaAIksL~~L~ 87 (263)
.|++=+.+-...|+.|-+.|.+++
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555665555555554
No 150
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=46.20 E-value=2.9e+02 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
|.++..+.+.+||+-+.....+|++|+.+
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444445555555555555555555543
No 151
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=46.20 E-value=24 Score=30.08 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHh
Q 024726 62 PQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 62 ~q~le~aLe~cgndlDaAIksL~ 84 (263)
..=..+||++||.||-.||=+|.
T Consensus 99 reeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 99 REEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhc
Confidence 33367899999999999998875
No 152
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.10 E-value=1.3e+02 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=16.4
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 174 SFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
.++.||..|++++..+..|+..|+
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777766654
No 153
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=45.68 E-value=1.8e+02 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
.+.+..+|++.+||=.-|..||.+++.+
T Consensus 88 ~Qrlk~iK~l~eqflK~le~le~~~~~~ 115 (130)
T PF04803_consen 88 NQRLKAIKELHEQFLKSLEDLEKSHDNQ 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778999999999999999998874
No 154
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.43 E-value=2.1e+02 Score=28.04 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=43.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKH-MVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkq-lv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
..+++|+.+...+++++.+.+--.--...+.-|-.|.++.. ..++.++. .-.+-.+.++.||.+-...+-.+.
T Consensus 12 efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~---~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 12 EFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELK---KSLKRCKKSLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCCChhHHHHHHHHHHHHHHHHhhHH
Confidence 34567788888888888887777777777777777777663 33333311 122344555555554444333333
No 155
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=45.32 E-value=1.3e+02 Score=25.64 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhH
Q 024726 145 MDDARARASRVLEILEKSIMARASD 169 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ra~a 169 (263)
++|.+.||..-+.-+|+.+-.|...
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~ 98 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVAR 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776553
No 156
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.85 E-value=4.5e+02 Score=28.66 Aligned_cols=117 Identities=22% Similarity=0.352 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHH---------HHHHHHHHHHHHH----------------hhHHHHHhcHHHHHHHHH
Q 024726 130 EWVELFVKEMTSATSMDDARARAS---------RVLEILEKSIMAR----------------ASDEAAQSFQKENATLKE 184 (263)
Q Consensus 130 eWVEl~V~EM~~Asd~dDAraRAs---------RvLEafEksi~~r----------------a~ae~~~~~~~E~~~lk~ 184 (263)
+|++-.+++ ...-++.++.|-. .++.-+|+++... -..+....+++|+..++.
T Consensus 402 e~Lee~l~e--kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~ 479 (775)
T PF10174_consen 402 ENLEEQLRE--KDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA 479 (775)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-------------------------hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024726 185 QIETVIRE-------------------------NSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 185 ql~~l~~e-------------------------N~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NY 239 (263)
.++.|..+ +.-||++--.--....++.....++..++. ..++...|+.||..+-
T Consensus 480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~-~~e~~~r~~~Le~ev~ 558 (775)
T PF10174_consen 480 KLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRA-NAELRDRIQQLEQEVT 558 (775)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CHhhcchHHHHHHHHH
Q ss_pred HHHHHHHHhh
Q 024726 240 ALSMHLKQAQ 249 (263)
Q Consensus 240 aL~~HL~qA~ 249 (263)
....-+-.|+
T Consensus 559 ~~~ee~~kaq 568 (775)
T PF10174_consen 559 RYREESEKAQ 568 (775)
T ss_pred HHHHHHHHHH
No 157
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.84 E-value=2e+02 Score=24.60 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=47.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAV-----AIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv-----~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
..++-||..|.++|+.=-.|=.-||... .+.|.|-+-. ....+...+++-+...++.+..++..-|.+....
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~-~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH-FLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888888876666655555544 3456665543 3456677777777777777777777776665543
No 158
>PHA02047 phage lambda Rz1-like protein
Probab=44.81 E-value=95 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQ 228 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyq 228 (263)
-|++.+.|+.||+.+...-.-+-+.|.--|.| .++..+++|+.+.+++
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k------ae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR------TNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCC
Confidence 48888899999988876666666666666555 2233444555555543
No 159
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.66 E-value=2e+02 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
..++.+++...++.++++.|+..-..|.--|+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444445555544444444444443
No 160
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.45 E-value=4.1e+02 Score=28.58 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.3
Q ss_pred HHHHHH
Q 024726 151 RASRVL 156 (263)
Q Consensus 151 RAsRvL 156 (263)
||..++
T Consensus 501 ~A~~~~ 506 (771)
T TIGR01069 501 QAKTFY 506 (771)
T ss_pred HHHHHH
Confidence 333333
No 161
>PLN02939 transferase, transferring glycosyl groups
Probab=44.42 E-value=2.8e+02 Score=31.09 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQ 207 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~ 207 (263)
|-+.+..|..||.+||..+..--.-.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45566777788888887655544333
No 162
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=44.09 E-value=37 Score=29.72 Aligned_cols=63 Identities=24% Similarity=0.220 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 186 IETVIRENSILKRAVAIQHERQKDYENR-NREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 186 l~~l~~eN~iLKRAv~IQheR~~e~e~~-~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
.++|..+-.-|.|+++.++-|.++-... ..-...|.+-+.+|+|-.|+|...+--....|.++
T Consensus 72 aEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~ 135 (173)
T PF07445_consen 72 AEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQA 135 (173)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4577778888999999999888876441 24556677889999999999998777666666654
No 163
>PRK00846 hypothetical protein; Provisional
Probab=43.51 E-value=1.6e+02 Score=23.10 Aligned_cols=36 Identities=6% Similarity=-0.144 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSS 252 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~ 252 (263)
+.+|.+.|.+.|.+|..|...--.|.-.|+.++.++
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455666777777777777777777788888887554
No 164
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.38 E-value=99 Score=23.09 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 216 EVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 216 E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
-+.+|.++|.+-|.+|.+|+...=.|.-.|+...
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777888888888888888888888888766
No 165
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.20 E-value=94 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=20.4
Q ss_pred hhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHH
Q 024726 167 ASDEAAQSFQKENATLKEQIETVIRENSILKRA 199 (263)
Q Consensus 167 a~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRA 199 (263)
+.+.-.+.+..++..||.+...+..+|..|+.-
T Consensus 65 VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 65 VRSRKDQLLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344344556666667777777777777766653
No 166
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.10 E-value=1.5e+02 Score=22.75 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 155 VLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 155 vLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
+||.++++...+-.+ ++.....|+.+++...++|.-|+.
T Consensus 11 ale~Lq~~y~~q~~~-----Wq~sy~~Lq~~~~~t~~~~a~L~~ 49 (70)
T PF04899_consen 11 ALEELQQSYEKQQQE-----WQSSYADLQHMFEQTSQENAALSE 49 (70)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 567777777765554 778888888888888888885543
No 167
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.76 E-value=2.1e+02 Score=28.21 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
..+...+|++.+.++++++..|+..
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555443
No 168
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.52 E-value=2e+02 Score=28.77 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 185 QIETVIRENSILKRAVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 185 ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
.++...+|-.-||..++-=-||.. .+.++.+++++ .++.+|.+|-.||
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E---~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWE---VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 345556677778877766666655 44467777666 6888889999998
No 169
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.41 E-value=4.4e+02 Score=29.58 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=7.6
Q ss_pred cccHHHHHHHHhhh
Q 024726 73 NADLDSTIKKLNEL 86 (263)
Q Consensus 73 gndlDaAIksL~~L 86 (263)
++++.++.+.|..|
T Consensus 255 ~~~l~~~~~~L~~l 268 (1201)
T PF12128_consen 255 YRQLQALEQQLCHL 268 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 170
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.32 E-value=2.3e+02 Score=31.99 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 181 TLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 181 ~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
-++.+++.+..+-..|+.++.-| |+++-|...++.+.+.+-......-|+.+-..|..|+--|.+.++
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~k--R~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQ--RQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666555 444444444444433222223333355555557777766666544
No 171
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=42.17 E-value=11 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 59 QLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 59 ~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
+|.++.-.+.|+++|=|++.|+..+.+|.-
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~ 41 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKA 41 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677888899999999999999999998764
No 172
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=42.01 E-value=22 Score=34.82 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=32.4
Q ss_pred CcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 45 TAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 45 ~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
.+.++|.+||.-= +-.---..++|++||+||+-|-+-|+.=..
T Consensus 45 ~~~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~aq 87 (340)
T KOG1071|consen 45 SSKALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKAQ 87 (340)
T ss_pred ccHHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3577888888642 222334889999999999999999987533
No 173
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.87 E-value=1.5e+02 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
.+.|..-+...+.+++.|+..|+.|+.-+
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455567778889999999999987543
No 174
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=41.79 E-value=1.7e+02 Score=23.06 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024726 188 TVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMH 244 (263)
Q Consensus 188 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~H 244 (263)
.|+++|.-||.=+. .++.|.+..+.=+..|+.-+-.|-+==+.||..+-.+..+
T Consensus 2 ~Li~qNk~L~~kL~---~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 2 ELIKQNKELKKKLN---DKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp ----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777776553 3445666666667777777777777777888888877774
No 175
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.63 E-value=5.5e+02 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
..+++.|+.-+..|+..+..++..-+.+..-+.
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555554444443
No 176
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.36 E-value=1.8e+02 Score=25.97 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 153 SRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 153 sRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
-+.|+.|..... ..+.+++||..|++++..|..+|.-|.
T Consensus 86 I~fLq~l~~~~~------~~~~~~~e~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 86 ISFLQNLKTTNP------SDQALQKENERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHhcch------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666654322 123355566666666655555555443
No 177
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=41.19 E-value=44 Score=28.17 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
....+..|...||++++.++.||..|.
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345578899999999999999999875
No 178
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=41.09 E-value=75 Score=34.76 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 195 ILKRAVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 195 iLKRAv~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
-+.|++.||-++.+ ..+..+.++..-...|+..=|+++.||.+---|+.||++|..
T Consensus 192 ~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~ 248 (966)
T KOG4286|consen 192 NVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEV 248 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 36789999999988 456677887777788999999999999999999999999985
No 179
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.88 E-value=4.2e+02 Score=27.16 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHH
Q 024726 145 MDDARARASRVLE 157 (263)
Q Consensus 145 ~dDAraRAsRvLE 157 (263)
+.+|+..|..+++
T Consensus 27 l~~Ae~eAe~i~k 39 (514)
T TIGR03319 27 LGSAEELAKRIIE 39 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 3456676666654
No 180
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=40.72 E-value=2.1e+02 Score=27.72 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQY 227 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qy 227 (263)
|.+.|-.+++.|.+.|.=||+=+ +.+.+|++.|||++.+.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa----------~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQA----------SELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 44555566777777777666532 12346666677766554
No 181
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=40.65 E-value=2.4e+02 Score=28.44 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHH---hhHHHHHh--cHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 144 SMDDARARASRVLEILEKSIMAR---ASDEAAQS--FQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 144 d~dDAraRAsRvLEafEksi~~r---a~ae~~~~--~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
-+.|=|+||.|+|+.=||-|..= +..+..+. ..-|...||...+-+..|+..|.+-+
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999988751 22211110 00245566666666667777777665
No 182
>PLN03025 replication factor C subunit; Provisional
Probab=40.61 E-value=52 Score=30.50 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=41.8
Q ss_pred ccccCCCCCCCCCCCCCCCCCcchHHHHHHhhC----CCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 25 RVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFF----PQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 25 R~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
|.||- .++|.++. .+.++..|..++ =.++++.++.+++.||.|+-.||..|.....
T Consensus 147 ~SRc~---~i~f~~l~-----~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 147 QSRCA---IVRFSRLS-----DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS 206 (319)
T ss_pred HHhhh---cccCCCCC-----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44562 57777732 367777877664 3578999999999999999999999875443
No 183
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.35 E-value=2.9e+02 Score=25.14 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHH---HHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024726 143 TSMDDARARASRVLEIL---EKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEY 219 (263)
Q Consensus 143 sd~dDAraRAsRvLEaf---Eksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~ 219 (263)
.++.-+-+-|.++|+.. -=......+.++....+.=....+..+.....+|..|+..+.-+ +.+|..+ |+.
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~---L~~~~~k---L~D 196 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDD---LNDYNAK---LQD 196 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHH---HHHHHHH---HHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 220 QKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 220 Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
|+.++.+.+++++.-+.-|-.=.-.|+
T Consensus 197 l~~~l~eA~~~~~ea~~ln~~n~~~l~ 223 (264)
T PF06008_consen 197 LRDLLNEAQNKTREAEDLNRANQKNLE 223 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 184
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.13 E-value=76 Score=28.94 Aligned_cols=69 Identities=12% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHHHhcHHHH---HHHHHHHHHHHHHhHHHHHHHHHHH---HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 169 DEAAQSFQKEN---ATLKEQIETVIRENSILKRAVAIQH---ERQKDYEN-RNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 169 ae~~~~~~~E~---~~lk~ql~~l~~eN~iLKRAv~IQh---eR~~e~e~-~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
.++..+||+|| ...++-|+-|..+-.|--+-..-|- -+|..++. -..|++.|+--+.-|+|+++.|..+
T Consensus 26 q~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t 101 (201)
T KOG4603|consen 26 QDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQT 101 (201)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445555555 3344445555555444444333331 12222221 1245555555555555555555443
No 185
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.81 E-value=50 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NY 239 (263)
.++..++|....++-+.||+.+++.|+..--
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888876543
No 186
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=39.77 E-value=49 Score=31.93 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=27.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~ 201 (263)
.+.+.++|..||+|+..|.+|..-||.+|.
T Consensus 257 ~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 257 LEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999985
No 187
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.60 E-value=5.8e+02 Score=28.48 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024726 217 VEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~ 236 (263)
++.+++.+..++.++-+||.
T Consensus 476 ~~~~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 476 LQRLEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 188
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=39.51 E-value=2.1e+02 Score=23.42 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
|.++++.+.++ |++....++.++...+..
T Consensus 81 ~~~~l~~~~~~---l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 81 RQQELQQKEQE---LQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33444444444 333444555555444433
No 189
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.47 E-value=3.2e+02 Score=25.46 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=7.0
Q ss_pred HHHHHHHHhhcCCCCCC
Q 024726 240 ALSMHLKQAQQSSSIPG 256 (263)
Q Consensus 240 aL~~HL~qA~~~~s~~g 256 (263)
.+...|....-..++.|
T Consensus 264 ~~~~~l~~~~i~AP~dG 280 (423)
T TIGR01843 264 KARDRLQRLIIRSPVDG 280 (423)
T ss_pred HHHHHHhhcEEECCCCc
Confidence 33334444443334444
No 190
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.40 E-value=4.3e+02 Score=26.93 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
+++|++.+|++|| +. .+.++|-||.--.+.
T Consensus 363 keLeekkreleql-------~~---q~~v~~saLdtCika 392 (442)
T PF06637_consen 363 KELEEKKRELEQL-------KM---QLAVKTSALDTCIKA 392 (442)
T ss_pred HHHHHHHHHHHHH-------HH---HHHhhhhHHHHHHHh
Confidence 3555555555443 22 356788888877765
No 191
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.17 E-value=2.4e+02 Score=26.91 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHH---HHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024726 129 AEWVELFVKEMTSATSMDDARARASRV---LEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHE 205 (263)
Q Consensus 129 ~eWVEl~V~EM~~Asd~dDAraRAsRv---LEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQhe 205 (263)
-.||-.+++=--.-..+.=-|.+...+ |+..++-... .......+..+...|+.+++...+|..-|+.-+.+-..
T Consensus 200 c~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~--~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 200 CKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAE--KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579888776433344444333333332 3332222221 11123335555666666666666666655555444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCC
Q 024726 206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHP 260 (263)
Q Consensus 206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~s~~g~~~P 260 (263)
|+.--... +..|..--..+++++..|+.....|--..--+--.-+..|+|++
T Consensus 278 kl~rA~~L---i~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~ 329 (344)
T PF12777_consen 278 KLERAEKL---ISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTP 329 (344)
T ss_dssp HHHHHHHH---HHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred hhccHHHH---HhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCH
Confidence 43332211 22222233445666666666655554444333333355666654
No 192
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.98 E-value=1.6e+02 Score=31.11 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=38.9
Q ss_pred HhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 166 RASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 166 ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
|-.-|.++++.+|+..|||++..|.. -|+-+-. -+.+| ..+-.+|+-.....+..+++||+
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~---~l~eke~----sl~dl---kehassLas~glk~ds~Lk~leI 387 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQA---ELTEKES----SLIDL---KEHASSLASAGLKRDSKLKSLEI 387 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHH---HHHHHHHHHHhhhhhhhhhHHHH
Confidence 44456677788888888888865554 2333333 33566 34466677777777777777664
No 193
>PF14645 Chibby: Chibby family
Probab=38.93 E-value=37 Score=28.20 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
...++..++++...|..||+.||-=+-|-
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999988655444
No 194
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.77 E-value=2.3e+02 Score=23.53 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
..+++..||+.+.+.-|.-.+|++-|--|+-+|.+.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777777777777777777764
No 195
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.51 E-value=1.5e+02 Score=30.40 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=8.1
Q ss_pred ChhhHHHHHHHHH
Q 024726 127 NGAEWVELFVKEM 139 (263)
Q Consensus 127 ~g~eWVEl~V~EM 139 (263)
|=..-|+..+.+|
T Consensus 53 ~~~~vV~~~Fddk 65 (475)
T PRK13729 53 DMTGVVDTTFDDK 65 (475)
T ss_pred CccceecchhHHH
Confidence 3344677777776
No 196
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=38.24 E-value=27 Score=30.47 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=11.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQK----DYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~----e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
-+..+..+...|+.++.+|..||.-|.--.+-=..++. +....-.++.+|+-++..|++-+...
T Consensus 16 ~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~ 83 (181)
T PF09311_consen 16 HLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIES 83 (181)
T ss_dssp HHHHHHHCCHHHHT------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccccc
Confidence 45667788999999999999999999877665444442 22234467777777888877665443
No 197
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.86 E-value=3.8e+02 Score=25.82 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024726 149 RARASRVLEILEKSIMARASDE-AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQY 227 (263)
Q Consensus 149 raRAsRvLEafEksi~~ra~ae-~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qy 227 (263)
|..=.-|=|-|-|++...|-=+ ....+.-+...||..|+.+.....-|+|=+. +..++++-..+...-|+--++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777788889988866522 2334555667777777777777766666552 23334433333344455556666
Q ss_pred HHHHHHHH
Q 024726 228 QEQLRTLE 235 (263)
Q Consensus 228 qEqir~LE 235 (263)
+++|+..+
T Consensus 160 re~L~~rd 167 (302)
T PF09738_consen 160 REQLKQRD 167 (302)
T ss_pred HHHHHHHH
Confidence 66666554
No 198
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.07 E-value=1.8e+02 Score=25.83 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 187 ETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 187 ~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
..+..||.-|++=+.--..+.+.+ ..|+..|++-...|+|--++
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~L---e~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEEL---EKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344445554444433333232222 23344444444444444443
No 199
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=37.06 E-value=1e+02 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024726 188 TVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMV 224 (263)
Q Consensus 188 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv 224 (263)
.+.+||..||.=.+....++.+.+...+|.++||.++
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444333333333333333344444444443
No 200
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.95 E-value=2.4e+02 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=11.1
Q ss_pred HhcHHHHHHHHHHHHHHHHHhH
Q 024726 173 QSFQKENATLKEQIETVIRENS 194 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~ 194 (263)
+.++.+..++..+...+.+.|-
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL 51 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNL 51 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555553
No 201
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=36.75 E-value=2.2e+02 Score=27.63 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=40.4
Q ss_pred HhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 166 RASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 166 ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
|--.+.+++++.+-+.||+|.+...+--+||-+-++--- +|+.+-.-.++.||+...=.--|+|++
T Consensus 104 rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kE---QEmqe~~sqi~~lK~qq~Ps~~qlR~~ 169 (330)
T KOG2991|consen 104 RLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKE---QEMQECTSQIQYLKQQQQPSVAQLRST 169 (330)
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 344556788888889999999888877777765555433 233333444555555444444455554
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.37 E-value=4e+02 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=6.3
Q ss_pred HHHhcccHHHHHHHHhh
Q 024726 69 LEECNADLDSTIKKLNE 85 (263)
Q Consensus 69 Le~cgndlDaAIksL~~ 85 (263)
|++-..+|+.|-+.|..
T Consensus 180 l~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 180 IAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 203
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=36.00 E-value=81 Score=28.80 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 024726 223 MVSQYQEQLRTLEINN 238 (263)
Q Consensus 223 lv~qyqEqir~LE~~N 238 (263)
-.+-|-||+-+||.||
T Consensus 102 ~daf~Ke~larlEen~ 117 (192)
T KOG4083|consen 102 QDAFYKEQLARLEENS 117 (192)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4555555555555555
No 204
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.93 E-value=4.9e+02 Score=27.50 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHERQKDYENR----NREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
-...|+...-.|..+|.=|+-++-.-....+++..+ ..++..+|.-|.---+-+..|...+-.+.-||+|.
T Consensus 168 QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 168 QLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333455667766666654433333333222 12222233222222223445555555555566654
No 205
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=35.72 E-value=2e+02 Score=22.10 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDY-ENRNREVEYQKHMVSQYQEQLRTLEINN-YALSMHLKQ 247 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~-e~~~~E~q~Lkqlv~qyqEqir~LE~~N-YaL~~HL~q 247 (263)
..++-.+.+........ .+...-+..|.+.+.+....++.+=.-| |+|.|-..|
T Consensus 54 ~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~q 109 (110)
T PF04003_consen 54 RWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLSQ 109 (110)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 45666666666666666 6677888999999999888888888888 999997765
No 206
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.53 E-value=75 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
-.+.+++|-.....-|++|.|||.
T Consensus 40 d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 40 EQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677787888899999999995
No 207
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=35.53 E-value=59 Score=30.52 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHH
Q 024726 145 MDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIR 191 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~ 191 (263)
..|=++ |++++|++.|.+.-....+ .|.||-+++++|++.+.+
T Consensus 183 ~PDP~A-Aa~vve~lnk~~~l~V~td---~L~keAe~i~~~lekl~e 225 (244)
T COG1938 183 RPDPRA-AARVVEALNKMLGLNVDTD---KLEKEAEEIEEQLEKLAE 225 (244)
T ss_pred CCChHH-HHHHHHHHHHHhcCccCHH---HHHHHHHHHHHHHHHHHH
Confidence 336555 7899999999988777664 477777777666665544
No 208
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.52 E-value=3.9e+02 Score=25.23 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH---HhhHHHHHhcHHHHHHHHHHHHHHH
Q 024726 142 ATSMDDARARASRVLEILEKSIMA---RASDEAAQSFQKENATLKEQIETVI 190 (263)
Q Consensus 142 Asd~dDAraRAsRvLEafEksi~~---ra~ae~~~~~~~E~~~lk~ql~~l~ 190 (263)
+.|-++|..-|-.+++..|..|.. +...++..-++++...+++++....
T Consensus 139 ~~dP~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 139 AFDAEEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATK 190 (362)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554433333322 2222333334444444444444433
No 209
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=35.39 E-value=1.8e+02 Score=31.42 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=32.2
Q ss_pred HHHHHhcHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024726 169 DEAAQSFQKENAT----LKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQ-KHMVSQYQEQLRTL 234 (263)
Q Consensus 169 ae~~~~~~~E~~~----lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~L-kqlv~qyqEqir~L 234 (263)
.+.++.+|.|..- .+..|++|.+||..||+-| ||-.-..-. ...| |-|++-|-|=+--|
T Consensus 232 ~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~ll-l~kd~k~i~------~kklKkSLIDMYSEVLD~L 295 (980)
T KOG0447|consen 232 KEKIDQLQEELLHTQLKYQRILERLEKENKELRKLV-LQKDDKGIH------HRKLKKSLIDMYSEVLDVL 295 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hhccchhhH------HHHHHHHHHHHHHHHHHHH
Confidence 3445667776532 3455788888888888544 332111111 1111 24677777766654
No 210
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=35.16 E-value=55 Score=30.19 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=39.6
Q ss_pred ccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 25 RVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 25 R~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
|+||- .++|.++.. +.+...|...|+.+++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~---~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ---IYKLNRLSK-----EEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce---eeeCCCcCH-----HHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 566766333 677788888999998888888888888877777765543
No 211
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=35.15 E-value=7e+02 Score=30.22 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
+..||+.|+..+..+...+.=+-+.| |+..+.......|...|+..+..++..++..|...+.+.+-+++
T Consensus 1489 l~renk~l~~ei~dl~~~~~e~~k~v---~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1489 LRRENKNLSQEIEDLEEQKDEGGKRV---HELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44444444444444444443333333 33334444444555556667777777777777777665555444
No 212
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.15 E-value=6e+02 Score=28.74 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 024726 217 VEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~N 238 (263)
+..|+..+.++.+.|+.++..-
T Consensus 890 L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444333
No 213
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.10 E-value=2.3e+02 Score=26.07 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=27.8
Q ss_pred cHHHHHHHHH---HHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024726 145 MDDARARASR---VLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 145 ~dDAraRAsR---vLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~ 201 (263)
+||.|..+-+ =-+-|-.-...-..- .+...++....|....+.|++||..||....
T Consensus 81 LDddRqKgrklarEWQrFGryta~vmr~-eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 81 LDDDRQKGRKLAREWQRFGRYTASVMRQ-EVAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred cchhHHHhHHHhHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5777776544 345555443332222 2222444555555555555666555555443
No 214
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.01 E-value=2.6e+02 Score=28.86 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 024726 219 YQKHMVSQYQE 229 (263)
Q Consensus 219 ~Lkqlv~qyqE 229 (263)
.|.|++.||||
T Consensus 147 ~lEq~leqeqe 157 (552)
T KOG2129|consen 147 PLEQLLEQEQE 157 (552)
T ss_pred cHHHHHHHHHH
Confidence 45688999994
No 215
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=34.97 E-value=4.7e+02 Score=26.07 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRE 192 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~e 192 (263)
.+.++..|+.++..+..+
T Consensus 65 ~~~~~~~L~~ql~~~~~~ 82 (390)
T PRK10920 65 QTATNDALANQLTALQKA 82 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466778888888777655
No 216
>KOG4330 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.25 E-value=3.7e+02 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=12.3
Q ss_pred HhcccHHHHHHHHhhhc
Q 024726 71 ECNADLDSTIKKLNELC 87 (263)
Q Consensus 71 ~cgndlDaAIksL~~L~ 87 (263)
.-.-+|--+||+++.-+
T Consensus 82 ~~~~~ikqei~R~~k~r 98 (206)
T KOG4330|consen 82 QINLNIKQEIKRSQKRR 98 (206)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33456778999999873
No 217
>PRK04406 hypothetical protein; Provisional
Probab=34.14 E-value=2.2e+02 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
+.+|.+.|.+-|.+|..|+..-=.|.-.|+.+..
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455566666666666666665555556666554
No 218
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.85 E-value=4.5e+02 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 024726 206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSS 252 (263)
Q Consensus 206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~ 252 (263)
-+.|.++-++...+||+++.|-|..+-+|+...-.-...++.+.+.+
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34567777788888999999999999999887777777777665543
No 219
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=33.82 E-value=2.3e+02 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~L 234 (263)
.+++.++..+...+.++..+
T Consensus 109 ~~~~~~~~~l~~~~~~l~~~ 128 (322)
T TIGR01730 109 AAVEAAQADLEAAKASLASA 128 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333
No 220
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.81 E-value=7.1e+02 Score=27.81 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=15.6
Q ss_pred HHHHHHHHHhc--ccHHHHHHHHhhh
Q 024726 63 QLLERALEECN--ADLDSTIKKLNEL 86 (263)
Q Consensus 63 q~le~aLe~cg--ndlDaAIksL~~L 86 (263)
.++..+|.... +||+.|.+-...+
T Consensus 607 ~~~~~~l~~t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 607 PAVRFVLGDTLVVDDLEQARRLARKL 632 (1163)
T ss_pred HHHHHHhCCeEEecCHHHHHHHHHhc
Confidence 44555555432 5788888888777
No 221
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=33.72 E-value=2.7e+02 Score=28.52 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 181 TLKEQIETVIRENSILKRAVAIQHERQK--DYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 181 ~lk~ql~~l~~eN~iLKRAv~IQheR~~--e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
.|+++++-+.+|+..-|+-+.|--+-.+ ++++...|+++|+.-=.+.-.|++.||.++|-|---|+.
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888877777777554444 456677777777766666667788888888877665554
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.23 E-value=3.5e+02 Score=23.99 Aligned_cols=95 Identities=19% Similarity=0.308 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHhH
Q 024726 129 AEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQ-HERQ 207 (263)
Q Consensus 129 ~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQ-heR~ 207 (263)
-.+++.+..+ +++.+.+-..+-+.+|.+-..|...+ |-..+-+.++.|..++.-|+.=+.-. ..=-
T Consensus 68 ~~~~~~l~~~------~~~~~~~i~~l~~~i~~~~~~r~~~~-------eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp 134 (188)
T PF03962_consen 68 QNKLEKLQKE------IEELEKKIEELEEKIEEAKKGREESE-------EREELLEELEELKKELKELKKELEKYSENDP 134 (188)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3455555554 35566666666667776655554432 23333334444444444444433311 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
..++.+.+++..++..+..+-+-|=.|+.
T Consensus 135 ~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 23455667777788888887777776653
No 223
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.98 E-value=3.3e+02 Score=23.75 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 186 IETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 186 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
++.|+.-+..|+.++..- .+|+...+++++|++-+....++||.+-.+
T Consensus 4 ~~~L~~~d~~L~~~L~~l----~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~ 51 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL----QEHQENQARIQQLRAEIEELDEQIRDILKQ 51 (188)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666665443 222233344555555555555555444333
No 224
>PRK14011 prefoldin subunit alpha; Provisional
Probab=32.84 E-value=64 Score=27.76 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
+.+..+++++.|+.....|++-+.+|+
T Consensus 18 qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 18 QVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557778888888888888888887
No 225
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.84 E-value=7.9e+02 Score=28.03 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHhcHHHHHHHHHHHHHHHH------HhHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIR------ENSIL--KRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSM 243 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~------eN~iL--KRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~ 243 (263)
...++++.+.+++.+..+-+ .-..| |=|.+--.+..++|.....+....+..++.||+.|+....++-.++-
T Consensus 237 i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~ 316 (1074)
T KOG0250|consen 237 IKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQ 316 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666555555542221 11222 23566667788899888889999999999999999999988887764
Q ss_pred H
Q 024726 244 H 244 (263)
Q Consensus 244 H 244 (263)
-
T Consensus 317 k 317 (1074)
T KOG0250|consen 317 K 317 (1074)
T ss_pred h
Confidence 3
No 226
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=32.79 E-value=9.8e+02 Score=29.08 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=53.5
Q ss_pred CChhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024726 126 QNGAEWVELFVKEMTS-ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQH 204 (263)
Q Consensus 126 ~~g~eWVEl~V~EM~~-Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQh 204 (263)
+.-.+|--.+..+... ...++++|.+...=|+..+..+..-...- ..+.+=...|+..++.+.-+..-...+++-..
T Consensus 1357 ~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~--~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le 1434 (1930)
T KOG0161|consen 1357 AELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKN--ASLEKAKNRLQQELEDLQLDLERSRAAVAALE 1434 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4668899888888776 88999999999999999999887744331 22333333344444444444444444444444
Q ss_pred HhHHHHH
Q 024726 205 ERQKDYE 211 (263)
Q Consensus 205 eR~~e~e 211 (263)
..++-++
T Consensus 1435 ~k~k~f~ 1441 (1930)
T KOG0161|consen 1435 KKQKRFE 1441 (1930)
T ss_pred HHHHHHH
Confidence 4444443
No 227
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=32.74 E-value=3.4e+02 Score=26.48 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKR-AVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKR-Av~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
+|.||+-|++||+-+...-.+-.+ ...|| .+..+. ++.|-+.+..|+--||..|--|
T Consensus 226 lqsEN~LLrQQLddA~~K~~~kek~ViniQ-~~f~d~---------~~~L~ae~ekq~lllEErNKeL 283 (305)
T PF14915_consen 226 LQSENMLLRQQLDDAHNKADNKEKTVINIQ-DQFQDI---------VKKLQAESEKQVLLLEERNKEL 283 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHH---------HHHHHHHHHHHHHHHHHHhHHH
Confidence 455666666666555443333332 33344 222222 3444566666666676666544
No 228
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.71 E-value=5.6e+02 Score=26.29 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=34.9
Q ss_pred chHHHHHHhhC----CCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFF----PQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
..++..|..++ =.++++.++.+.+.||.|+..|+.-|..|.+
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56677777663 2488999999999999999999999998866
No 229
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=32.69 E-value=2.2e+02 Score=30.77 Aligned_cols=56 Identities=29% Similarity=0.274 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSM 243 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~ 243 (263)
|+.-||+||.-+-+|+..|-..+.. .+..+.+-+..+...+++|..|-.+.-+|.-
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e----------~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQE----------SQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677999999999999999877643 3455555666666667777777666555543
No 230
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=32.68 E-value=88 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
-.+.+++|-+-...-+|+|.+||.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777778888899999985
No 231
>PRK04195 replication factor C large subunit; Provisional
Probab=32.64 E-value=60 Score=32.13 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCCCcchHHHHHHhhC----CCCCHHHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 33 PSKFTPPPPPTTTAPQLLDRLRAFF----PQLEPQLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 33 p~r~~~~~~~~~~~~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
.++|.++.. ..++..|..++ -.+++.+|+.+.+.||.||-.||..|..+.
T Consensus 154 ~I~f~~~~~-----~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 154 MIEFKRLST-----RSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred EEEecCCCH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 466766333 56667777654 247899999999999999999998887643
No 232
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.59 E-value=2.3e+02 Score=22.70 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~NY 239 (263)
..|+..|+..+..|+++++.|-..|.
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 46777788888888888888887664
No 233
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=32.51 E-value=3e+02 Score=26.07 Aligned_cols=81 Identities=23% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--hhHHHHHhcHHHH-HHH----HHHHHHHHHHhHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHH
Q 024726 157 EILEKSIMAR--ASDEAAQSFQKEN-ATL----KEQIETVIRENSILKRAVAIQHE------RQKDYENRNREVEYQKHM 223 (263)
Q Consensus 157 EafEksi~~r--a~ae~~~~~~~E~-~~l----k~ql~~l~~eN~iLKRAv~IQhe------R~~e~e~~~~E~q~Lkql 223 (263)
++||.|.++| ..++-.+.+-+|. .+| |+.+-.--.+++|||=-+.-+-+ +--++....++.+.|+.-
T Consensus 3 ~t~~~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~ 82 (272)
T KOG4552|consen 3 ETDERSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAH 82 (272)
T ss_pred ccccccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 024726 224 VSQYQEQLRTLEIN 237 (263)
Q Consensus 224 v~qyqEqir~LE~~ 237 (263)
|+.-.+-|.+|+.+
T Consensus 83 VEkrD~~IQqLqk~ 96 (272)
T KOG4552|consen 83 VEKRDEVIQQLQKN 96 (272)
T ss_pred HHHhHHHHHHHHHH
No 234
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.25 E-value=8.9e+02 Score=28.43 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 024726 177 KENATLKEQIETVIRENSILKRAVAIQHERQKDYENRN 214 (263)
Q Consensus 177 ~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~ 214 (263)
.+...+++++..+..+..-+..++..+..+...|+...
T Consensus 383 eEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444445555555555555554333
No 235
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.07 E-value=2.3e+02 Score=21.53 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcC
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQS 251 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~ 251 (263)
+..|..+|.+-|.+|.+|+..-=.|.-.|+....+
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566677777777777776655566666665543
No 236
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=5.2e+02 Score=25.65 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQL---------RTLEINNYALSMHL 245 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqi---------r~LE~~NYaL~~HL 245 (263)
.+++...|.+++..+++-....|.++.-=..-.+..+..++++...+..+.++..+. +..|..++-+.-+.
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Confidence 577888899999999998888888886544434444555666666666666666666 44455555444443
Q ss_pred HH
Q 024726 246 KQ 247 (263)
Q Consensus 246 ~q 247 (263)
.+
T Consensus 434 ~~ 435 (503)
T KOG2273|consen 434 NE 435 (503)
T ss_pred HH
Confidence 33
No 237
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.87 E-value=4.8e+02 Score=25.26 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
++++..+.+-+.+.+.++.+|+.
T Consensus 99 ~~~l~~~~~~l~~l~~~~~~l~~ 121 (372)
T PF04375_consen 99 QQELAQLQQQLAELQQQLAALSQ 121 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666777777776664
No 238
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.79 E-value=3.1e+02 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=12.3
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHh
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEEC 72 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~c 72 (263)
++++-|+. .+....+.++|+.+
T Consensus 21 di~~nL~~---~~~K~~v~k~Ld~L 42 (169)
T PF07106_consen 21 DIFDNLHN---KVGKTAVQKALDSL 42 (169)
T ss_pred HHHHHHHh---hccHHHHHHHHHHH
Confidence 44455555 44556666666655
No 239
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.78 E-value=3.3e+02 Score=23.27 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQH--ERQKDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQh--eR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
+..+...+|.+...+..+|.-|+.--.+=+ .=+.||+....++..|++-|..++..++.|+..
T Consensus 110 ~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 110 LREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444443333211 123478888888899999888888888888754
No 240
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.61 E-value=2e+02 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
.++|++.|++--.+.+++|..|.
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444
No 241
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=31.49 E-value=5.1e+02 Score=25.39 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=71.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024726 143 TSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKH 222 (263)
Q Consensus 143 sd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkq 222 (263)
..++-|+++.......|++.+..-... . .+---....+.++++...+.-...++++.+...|.+.=-.-.-+|-+-+.
T Consensus 368 a~~~~A~a~~~~a~~~y~~t~~~a~~e-V-~~a~~~~~~~~~~~~~~~~~~~~a~~~~~la~~ry~~G~~~~l~vl~aq~ 445 (478)
T PRK11459 368 ANLDIAKAQSNLSIASYNKAVVDAVND-V-ARAASQVETLAEKNQHQQQIERDALRVVGLAQARFNAGIIAGSRVSEAKI 445 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 345667788888888898888874443 3 33344556777888888888888888888888887632222244444555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 223 MVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 223 lv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
-+-+.|.++-+++.+...-.+.|-+|-
T Consensus 446 ~~l~~~~~~~~~~~~~~~~~v~L~~AL 472 (478)
T PRK11459 446 PALRERANGLLLQGQWLDASIQLTSAL 472 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566677777777777777777777776
No 242
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.43 E-value=1.3e+02 Score=23.24 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=30.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSIL----KRAVAIQHE-RQKDYENRNREVEYQKHMVSQYQEQL 231 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iL----KRAv~IQhe-R~~e~e~~~~E~q~Lkqlv~qyqEqi 231 (263)
....+++||=.||-++--|...-.-+ -..+.-++- ..-+.+...+|++.+++++.+.+..|
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557777766665554333222200 011111221 12255556677777777777666543
No 243
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.33 E-value=2.4e+02 Score=24.72 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 207 QKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 207 ~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
.+||+...+|+.++|..+.++-+++-.||...-.-+..|-..
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888888888888888887777777553
No 244
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.16 E-value=5.3e+02 Score=25.53 Aligned_cols=81 Identities=25% Similarity=0.246 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcH----------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHh-----HHHHHH
Q 024726 150 ARASRVLEILEKSIMARASDEAAQSFQ----------KENATLKEQIETVIREN--SILKRAVAIQHER-----QKDYEN 212 (263)
Q Consensus 150 aRAsRvLEafEksi~~ra~ae~~~~~~----------~E~~~lk~ql~~l~~eN--~iLKRAv~IQheR-----~~e~e~ 212 (263)
.|-.|-||--||--.++-+.+...... +|...+.+.-.+-.++. .+||+-|..|..| +++.+.
T Consensus 322 e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeek 401 (445)
T KOG2891|consen 322 EIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEK 401 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455666666666555554443332222 22222222122223333 6899988666544 334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024726 213 RNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~L 234 (263)
...|.|..|+ .+|+|+.-
T Consensus 402 lk~e~qkike----leek~~ee 419 (445)
T KOG2891|consen 402 LKAEEQKIKE----LEEKIKEE 419 (445)
T ss_pred HHHHHHHHHH----HHHHHHHH
Confidence 5566665554 45555543
No 245
>PHA03162 hypothetical protein; Provisional
Probab=31.12 E-value=2.2e+02 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
-.+.|..+|..|.-||.-||+-+.-+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888888888888888544
No 246
>PF15463 ECM11: Extracellular mutant protein 11
Probab=31.11 E-value=1.7e+02 Score=24.49 Aligned_cols=59 Identities=20% Similarity=0.427 Sum_probs=40.2
Q ss_pred hhhHHHH---HHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHH
Q 024726 128 GAEWVEL---FVKEMT-SATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIR 191 (263)
Q Consensus 128 g~eWVEl---~V~EM~-~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~ 191 (263)
=.+|.+. |+.+.. -..-|.++|.-=.++-+.||+.|..|+.+ +..+...|.++|+.+..
T Consensus 71 ~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-----v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 71 FDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-----VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3455542 343333 33457888888888999999999999888 56666666666666543
No 247
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=31.11 E-value=91 Score=24.20 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHhhcCCC
Q 024726 216 EVEYQKHMVSQYQEQLRTLEINNYALS-MHLKQAQQSSS 253 (263)
Q Consensus 216 E~q~Lkqlv~qyqEqir~LE~~NYaL~-~HL~qA~~~~s 253 (263)
+|.+|-+--.+.++++.+||...|.+- -+|......|.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GN 41 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGN 41 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCC
Confidence 344444445566777888888888874 34553554443
No 248
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.09 E-value=3.5e+02 Score=24.98 Aligned_cols=12 Identities=25% Similarity=0.191 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhh
Q 024726 157 EILEKSIMARAS 168 (263)
Q Consensus 157 EafEksi~~ra~ 168 (263)
..+|..+..+..
T Consensus 43 ~~le~~~~~~~~ 54 (263)
T PRK10803 43 TQLERISNAHSQ 54 (263)
T ss_pred HHHHHHHHhhhH
Confidence 344444444443
No 249
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.98 E-value=3e+02 Score=22.64 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHH
Q 024726 150 ARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYEN-RNREVEYQKHMVSQYQ 228 (263)
Q Consensus 150 aRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~q~Lkqlv~qyq 228 (263)
.+|..+=+=||.=+..|+.. -++...||+++..+..+..-|+..+..........+. -..+-..|+.-+...+
T Consensus 38 ~~a~~Aq~~YE~El~~Ha~~------~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 38 KIAQEAQQKYERELVKHAED------IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444455555555443 2244556666666666666666666555555554443 2344566777888899
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 024726 229 EQLRTLEINNYALSMHLK 246 (263)
Q Consensus 229 Eqir~LE~~NYaL~~HL~ 246 (263)
.++.-|...|=-|--+|.
T Consensus 112 ~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 112 QRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988766654
No 250
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.96 E-value=3.3e+02 Score=23.09 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEq 230 (263)
+..|++-+..|..+++.+..+-.-+|..+..=+.+....+..++.++.|-.=+++....
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554444444444444444444444433333
No 251
>PRK02119 hypothetical protein; Provisional
Probab=30.85 E-value=2.4e+02 Score=21.48 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcC
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQS 251 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~ 251 (263)
+..|..+|.+=|.+|..|+..-=.|.-.|+....+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566666666777777776666666666665533
No 252
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=30.81 E-value=16 Score=37.99 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred CcHHHHHHHH
Q 024726 144 SMDDARARAS 153 (263)
Q Consensus 144 d~dDAraRAs 153 (263)
-.+|.|.++.
T Consensus 261 ~~~d~~~~~e 270 (713)
T PF05622_consen 261 QRDDLKIELE 270 (713)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3555555554
No 253
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.61 E-value=1.8e+02 Score=30.08 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHhcHHHHHHHHHHHHHH--HHHhHH------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 171 AAQSFQKENATLKEQIETV--IRENSI------------LKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l--~~eN~i------------LKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+..+|||...+.++|.+- .-+--+ -.+-++--|.=-.+.-++..+.-.+++-|..|++||-.-+.
T Consensus 411 etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~ 490 (521)
T KOG1937|consen 411 ETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQ 490 (521)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHH
Confidence 3466788777777776641 111111 12234445665566666777777788888888888888888
Q ss_pred hhHHHHHHHH
Q 024726 237 NNYALSMHLK 246 (263)
Q Consensus 237 ~NYaL~~HL~ 246 (263)
.||--++-.-
T Consensus 491 k~~l~slEkl 500 (521)
T KOG1937|consen 491 KQYLKSLEKL 500 (521)
T ss_pred HHHHhhHHHH
Confidence 8877665443
No 254
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.54 E-value=3.7e+02 Score=23.51 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 024726 130 EWVELFVKEM 139 (263)
Q Consensus 130 eWVEl~V~EM 139 (263)
.=++..++||
T Consensus 26 ~~l~q~ird~ 35 (221)
T PF04012_consen 26 KMLEQAIRDM 35 (221)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 255
>PRK00106 hypothetical protein; Provisional
Probab=30.42 E-value=6.4e+02 Score=26.24 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 024726 146 DDARARASRVLE 157 (263)
Q Consensus 146 dDAraRAsRvLE 157 (263)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 466676666653
No 256
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.33 E-value=3.6e+02 Score=24.04 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024726 224 VSQYQEQLR 232 (263)
Q Consensus 224 v~qyqEqir 232 (263)
+...+.++.
T Consensus 111 ~~~~~~~l~ 119 (322)
T TIGR01730 111 VEAAQADLE 119 (322)
T ss_pred HHHHHHHHH
Confidence 333333333
No 257
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.21 E-value=6.7e+02 Score=26.40 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCcchHHHHHHhhCC----CCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 33 PSKFTPPPPPTTTAPQLLDRLRAFFP----QLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 33 p~r~~~~~~~~~~~~~~~~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
.++|.+... ..+...|..+|- .+++..++.+.+.||.|+..|+.-|..|.+
T Consensus 180 ~vef~~l~~-----~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 180 RFNFKRIPL-----DEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred EEecCCCCH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566766333 666777887764 489999999999999999999999988765
No 258
>PHA03162 hypothetical protein; Provisional
Probab=30.13 E-value=87 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 024726 224 VSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGR 257 (263)
Q Consensus 224 v~qyqEqir~LE~~NYaL~~HL~qA~~~~s~~g~ 257 (263)
+++.+.+|-+|+..|-+|.--|++......+||-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d 48 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGD 48 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 5667778888999999999999887766666664
No 259
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.87 E-value=2.8e+02 Score=21.85 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHH
Q 024726 134 LFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVI 190 (263)
Q Consensus 134 l~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~ 190 (263)
..|-+|.--.+.++|...=..-++.+++.|..-... ...++++...+|.+|..+.
T Consensus 50 ~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~--~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 50 KLVGNVLVKQEKEEARTELKERLETIELRIKRLERQ--EEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 667778888999999999999999999888875544 4557778888887776654
No 260
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.87 E-value=1.8e+02 Score=27.13 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 199 AVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 199 Av~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
.|.-|-.|.+ -..+..+|+.++++.+...+.+|.+|...|--|---.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 2234456777788888888888888888886664333
No 261
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=29.86 E-value=7.6e+02 Score=27.92 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 192 ENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 192 eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
+..-+|+-+.|-..+..+. .-|+|.|...+..||+++|.-|.
T Consensus 100 dlk~~~sQiriLQn~c~~l---E~ekq~lQ~ti~~~q~d~ke~et 141 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRL---EMEKQKLQDTIQGAQDDKKENEI 141 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333 34566677788889999886443
No 262
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=29.85 E-value=78 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024726 179 NATLKEQIETVIRENSILKRAVAIQH 204 (263)
Q Consensus 179 ~~~lk~ql~~l~~eN~iLKRAv~IQh 204 (263)
.+.|-.+|..|.-||.-||+-|.-.-
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34566778888888888888876443
No 263
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=29.66 E-value=41 Score=32.44 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.5
Q ss_pred HHHHHHHhcccHHHHHHHHhhhccccc
Q 024726 65 LERALEECNADLDSTIKKLNELCSRSD 91 (263)
Q Consensus 65 le~aLe~cgndlDaAIksL~~L~L~~a 91 (263)
-.+||++++.|||.||+-|..--+-.+
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA 49 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKA 49 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhh
Confidence 579999999999999999998544333
No 264
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=29.65 E-value=3e+02 Score=24.83 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHH---hHHHHHHHHHH
Q 024726 147 DARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRE---NSILKRAVAIQ 203 (263)
Q Consensus 147 DAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~e---N~iLKRAv~IQ 203 (263)
-+..+|-.+|++|-+.|...-.. ..+++. ..|+.....|.+- ...+.+++..-
T Consensus 4 Gs~~~ai~al~~L~~~i~~~~~~-~~~el~---~~L~~~~~~L~~arP~~~~l~n~v~~~ 59 (282)
T PF01008_consen 4 GSPAIAIAALEALRQVISDSKAT-TVQELI---EELRKAAKRLIKARPTSVSLGNAVRRI 59 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHCS-SHHHHH---HHHHHHHHHHHTSSTS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCCC-CHHHHH---HHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 36789999999999988875422 233343 3444444444432 22444544433
No 265
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.57 E-value=4.2e+02 Score=23.81 Aligned_cols=13 Identities=0% Similarity=0.304 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 024726 223 MVSQYQEQLRTLE 235 (263)
Q Consensus 223 lv~qyqEqir~LE 235 (263)
-+.++++.|...+
T Consensus 161 ~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 161 KLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 266
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.40 E-value=9.1e+02 Score=27.70 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQ 220 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~L 220 (263)
+..-+++-..+|..+-+-+--||++..++++..+..+.|
T Consensus 455 ~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknl 493 (1195)
T KOG4643|consen 455 VTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNL 493 (1195)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445567777777777777777776543333333
No 267
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.30 E-value=4e+02 Score=23.64 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
+..-|.+|++||+.....|.-|..=+
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~dl 104 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQEDL 104 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999998888888886544
No 268
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.24 E-value=1.2e+02 Score=24.10 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 189 VIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 189 l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
+..|-.=-|.=.+-+..|+++++.+-.|...+ ++=.=||.+-.+.--|..-|+....
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~-----EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAENL-----EIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33333333333445556777777666665553 3345678888888889999988754
No 269
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.20 E-value=7.5e+02 Score=26.65 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 024726 152 ASRVLEILE 160 (263)
Q Consensus 152 AsRvLEafE 160 (263)
..++|+-+|
T Consensus 518 ~~~li~~l~ 526 (782)
T PRK00409 518 LNELIASLE 526 (782)
T ss_pred HHHHHHHHH
Confidence 333443333
No 270
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.08 E-value=4.1e+02 Score=23.58 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~ 201 (263)
.++++...|+++..+..++.-.+..+.
T Consensus 82 ~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 82 LRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555444444444444
No 271
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=28.70 E-value=1.2e+02 Score=31.77 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
.+..+.+||.+++|+.+..=|.--|.||.+
T Consensus 623 d~v~~lqqd~~kmkk~leeEqkaRrdLe~l 652 (661)
T KOG2070|consen 623 DEVSELQQDNKKMKKVLEEEQKARRDLEKL 652 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777777777777777777764
No 272
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.59 E-value=6.4e+02 Score=25.65 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYEN 212 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~ 212 (263)
+..+......|+..-..+..|..=|+.+..-|.++++..+-
T Consensus 163 i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~ 203 (420)
T COG4942 163 IDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666555443
No 273
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.44 E-value=2.3e+02 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
+..|..-..++.+++..|+..+..|
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 274
>PF13991 BssS: BssS protein family
Probab=28.38 E-value=59 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 024726 218 EYQKHMVSQYQEQLRTLEINNYA 240 (263)
Q Consensus 218 q~Lkqlv~qyqEqir~LE~~NYa 240 (263)
.+.|||+...|++|..||-+-|.
T Consensus 45 e~Ar~Li~~L~~~I~kiE~se~~ 67 (73)
T PF13991_consen 45 EMARQLISILEAGIDKIESSEYQ 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 35789999999999999998874
No 275
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.37 E-value=5.4e+02 Score=25.78 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=50.5
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----
Q 024726 138 EMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENR---- 213 (263)
Q Consensus 138 EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~---- 213 (263)
+|++ .+.++-|.|+-..++-+-+-...-... .+.+..-...|+++.++|.+|-..|+...-|-..--.|..++
T Consensus 210 svis-a~~eklR~r~eeeme~~~aeq~slkRt--~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~ 286 (365)
T KOG2391|consen 210 SVIS-AVREKLRRRREEEMERLQAEQESLKRT--EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL 286 (365)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
Confidence 4444 456778888877776654444332111 112333333344444444444444444444443322221111
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 214 ---------NREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 214 ---------~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
.-+----||+|.-|..-. +.|-..|.|.--++
T Consensus 287 ~~~~~D~~~~~~~~l~kq~l~~~A~d~-aieD~i~~L~~~~r 327 (365)
T KOG2391|consen 287 EALDIDEAIECTAPLYKQILECYALDL-AIEDAIYSLGKSLR 327 (365)
T ss_pred cCCCchhhhhccchHHHHHHHhhhhhh-HHHHHHHHHHHHHh
Confidence 112233567777777665 45666666654333
No 276
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=28.35 E-value=61 Score=26.48 Aligned_cols=23 Identities=52% Similarity=0.873 Sum_probs=20.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHhc
Q 024726 51 DRLRAFFPQLEPQLLERALEECN 73 (263)
Q Consensus 51 ~~L~~lFP~md~q~le~aLe~cg 73 (263)
..|+++||+.|.++++++|+.-.
T Consensus 39 ~Rl~~f~~~~D~~~~~~~l~~~~ 61 (118)
T PF11236_consen 39 KRLRAFFPELDIDLVRAALEAFE 61 (118)
T ss_pred HHHHHhCccCCHHHHHHHHHHHH
Confidence 88999999999999999887654
No 277
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=28.29 E-value=5.3e+02 Score=26.04 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH--HHHHHhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 177 KENATLKEQIE--TVIRENSI-LKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 177 ~E~~~lk~ql~--~l~~eN~i-LKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
.|...+..|+. .+..||+. +++-..++-.-+.+++..++++..+.+-++.-|.+++++-
T Consensus 63 ~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 63 QELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 34444444444 33333333 4444444444444444444444444444555555555554
No 278
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.28 E-value=3.1e+02 Score=21.95 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=19.6
Q ss_pred HhcHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHhHHHHH
Q 024726 173 QSFQKENATLKEQIE------TVIRENSILKRAVAIQHERQKDYE 211 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~------~l~~eN~iLKRAv~IQheR~~e~e 211 (263)
..+.+|+..|++|++ +..-||.-|+ -|..|.+.+.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~----ee~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLR----EELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 446777777776654 3445555554 3445555544
No 279
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=28.09 E-value=4.9e+02 Score=26.83 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH----HHHHHH
Q 024726 142 ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYE----NRNREV 217 (263)
Q Consensus 142 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~ 217 (263)
-..+++|+.=..|+++.++| +.. +..........|...+.+........-.+|++|+.|+-....+.. ..-..+
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~-~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEK-LLG-ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred cCChHHHHHHHHHHHHHHHH-hhc-cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 46788999999999999999 333 233334445566777777777777888888888888763322221 122445
Q ss_pred HHHHHHHHHHHHHHHH
Q 024726 218 EYQKHMVSQYQEQLRT 233 (263)
Q Consensus 218 q~Lkqlv~qyqEqir~ 233 (263)
..|.+...+|+|-..-
T Consensus 374 ~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEEL 389 (508)
T ss_pred HHHHHHhcchhHHHHH
Confidence 5666666777665443
No 280
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.84 E-value=2.2e+02 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
+.++...||..-+.|..+|..|+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~ 25 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLK 25 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777766665
No 281
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=27.73 E-value=3.9e+02 Score=27.25 Aligned_cols=37 Identities=14% Similarity=0.350 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 193 NSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 193 N~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
-.-+|.+|--||++. .++..||..-+.||.+++|-+|
T Consensus 82 ~~rIkq~FEkkNqks------ahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 82 VARIKQVFEKKNQKS------AHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred hHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHh
Confidence 345566676666542 4668889999999999999999
No 282
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=27.65 E-value=1e+02 Score=26.12 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 224 VSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 224 v~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
+++.+.+|-+|+..|-+|.--|++...
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 566777888899999999999988764
No 283
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.55 E-value=3.6e+02 Score=29.75 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-H--------HHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYEN-R--------NREVEYQKHMV 224 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~-~--------~~E~q~Lkqlv 224 (263)
|++--+|.+|.---+--..-++|-|++-- ++-|-.||.-|+|=++|-+.+++|.|. + +=||--|+-+=
T Consensus 360 RLitEvE~cislLPav~g~tniq~EIALA---~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN 436 (861)
T PF15254_consen 360 RLITEVEACISLLPAVSGSTNIQVEIALA---MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLN 436 (861)
T ss_pred HHHHHHHHHHHhhhhhhccccchhhhHhh---hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 024726 225 SQYQEQLRTLEINNYALS 242 (263)
Q Consensus 225 ~qyqEqir~LE~~NYaL~ 242 (263)
--.|.|++.....--.|.
T Consensus 437 ~~Lq~ql~es~k~~e~lq 454 (861)
T PF15254_consen 437 MSLQNQLQESLKSQELLQ 454 (861)
T ss_pred HHHHHHHHHHHHhHHHHH
No 284
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=27.54 E-value=1.7e+02 Score=26.88 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=32.3
Q ss_pred HHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024726 161 KSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQ 226 (263)
Q Consensus 161 ksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~q 226 (263)
|-|.++-.- +-..-=+||..|.+.++.+-.|+..|| -.+..+++. ..+++.|..+|..
T Consensus 110 k~lAE~RR~-AL~eaL~ENe~Lh~~ie~~~eEi~~lk----~en~~L~el---ae~~~~la~~ie~ 167 (200)
T PF07412_consen 110 KELAEERRK-ALEEALEENEKLHKEIEQKDEEIAKLK----EENEELKEL---AEHVQYLAEVIER 167 (200)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHH
Confidence 334443322 455555688888888888878877777 233333443 3344444444444
No 285
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.24 E-value=1.2e+02 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+.+++|-+....-+++|.|||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888999999995
No 286
>PRK09087 hypothetical protein; Validated
Probab=27.16 E-value=63 Score=28.86 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=41.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCC----CCCHHHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 25 RVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFP----QLEPQLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 25 R~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
|.||..+-.+++.++ +.++...-|+..|- .+++++++-.++.++.|+-+++.-|+.|.
T Consensus 139 ~SRl~~gl~~~l~~p-----d~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 139 KSRLKAATVVEIGEP-----DDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred HHHHhCCceeecCCC-----CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456654444555552 23555666665553 68999999999999999999999888774
No 287
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=27.16 E-value=89 Score=29.76 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=38.0
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 23 SKRVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 23 sKR~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
+=|+||- .++|.|+.. +..+..|...+|..++.-+..++.-++.....|++-+.
T Consensus 152 TI~SRc~---~~~~~~~~~-----~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 152 TIKSRCQ---QQACPLPSN-----EESLQWLQQALPESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHhhce---eeeCCCcCH-----HHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 5688995 567776322 66677888777777777777777777777777776543
No 288
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=26.98 E-value=9.7e+02 Score=28.97 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
-...+++++..|+..+..+..++.=|+.....+-+|.+ -|...|+.|.+++.+|+..|--|.-++
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle----------~L~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLE----------NLEKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888777766643 344456666666666666655554443
No 289
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=26.76 E-value=1.1e+02 Score=31.41 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH----------------H----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 177 KENATLKEQIETVIRENSILKRAVAIQHERQKD----------------Y----ENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 177 ~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e----------------~----e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+++.|+.||.+|.++-+-|+..++-|+.---- . .--+.+++++||-|+-.|=++..||.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~d 104 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLED 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhh
Confidence 456677777777777777788877777542100 0 00145677778778877777777765
Q ss_pred h
Q 024726 237 N 237 (263)
Q Consensus 237 ~ 237 (263)
.
T Consensus 105 a 105 (514)
T PF11336_consen 105 A 105 (514)
T ss_pred H
Confidence 3
No 290
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=26.75 E-value=64 Score=29.10 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 63 QLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 63 q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
+-|.++|++||.+|.++.++||-.|
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4589999999999999999998653
No 291
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.61 E-value=1.6e+02 Score=22.71 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=29.8
Q ss_pred hcHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 174 SFQKENATLKEQIET---VIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQL 231 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~---l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqi 231 (263)
.+..+-..||-+|.. +++++.=+-|-+.-|.+..++++ +++...++++..|.+++
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le---~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELE---EQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 344455555555433 23333335566666665555554 44555666777777764
No 292
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.56 E-value=4e+02 Score=22.92 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLR 232 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir 232 (263)
.|.++..+..|..-||--+.--+.-.+++...+.-+..|+.-+..||+...
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333322333333334444444443
No 293
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.25 E-value=2.8e+02 Score=20.66 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE 235 (263)
+++..|+..+....++|+.++
T Consensus 32 ~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444455555554
No 294
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=26.15 E-value=84 Score=30.29 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=40.6
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCCC--CCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 23 SKRVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQ--LEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 23 sKR~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP~--md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+=|.||. .++|.|+. .+.+.+.|....+. +|+..+..+++.+|.+.-.||.-|..
T Consensus 187 tIrSRc~---~i~l~pl~-----~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 187 TIRSRCQ---PISLKPLD-----DDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred HHHhhcc---EEEecCCC-----HHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4577884 56677632 36677777765544 56899999999999999999987754
No 295
>PRK04132 replication factor C small subunit; Provisional
Probab=26.12 E-value=63 Score=35.19 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=43.5
Q ss_pred cccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCC----CCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 24 KRVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFP----QLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 24 KR~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
=|+||- .++|.|+. ...++..|..+.. .++++.+..+...|+.|+-.||..|..+..
T Consensus 677 IrSRC~---~i~F~~ls-----~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 677 IQSRCA---IFRFRPLR-----DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA 737 (846)
T ss_pred Hhhhce---EEeCCCCC-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467784 67777732 2677777876643 368999999999999999999999877543
No 296
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=26.06 E-value=2.6e+02 Score=23.87 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 201 AIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 201 ~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
.|-.+|..+.+...++.++.+..+.+|.+.|...
T Consensus 35 ~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~ 68 (134)
T PRK10328 35 VVTKERREEEEQQQRELAERQEKINTWLELMKAD 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777888888888999999988753
No 297
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=26.01 E-value=3.5e+02 Score=21.71 Aligned_cols=87 Identities=8% Similarity=0.151 Sum_probs=60.7
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 137 KEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNRE 216 (263)
Q Consensus 137 ~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E 216 (263)
+-.+.|+|+++.+.-..++-.+.+.|-... +.....-..|....++-+..|+.+-..++.+|.- -++++..++
T Consensus 15 k~~~~a~~~~e~~~~l~~m~~~a~~ak~~~--P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~~~-----G~l~~AK~~ 87 (103)
T PF07361_consen 15 KQAAKADDAAEMKTALDKMRAAAEDAKQGK--PPKLEGDSAEVKDYQEGLDKLIDQIDKAEALAEA-----GKLDEAKAA 87 (103)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHHTTTS---GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHHHT-----THHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhcC--CccccccchHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHH
Confidence 445689999999998777777777665543 3222223456777888888888888888876653 355666777
Q ss_pred HHHHHHHHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQ 230 (263)
Q Consensus 217 ~q~Lkqlv~qyqEq 230 (263)
++.|..+-.+|-..
T Consensus 88 l~~l~~lR~eyHkk 101 (103)
T PF07361_consen 88 LKKLDDLRKEYHKK 101 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHh
Confidence 88888877777554
No 298
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.00 E-value=72 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.646 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhc--ccHHHHHHHHhhhc
Q 024726 61 EPQLLERALEECN--ADLDSTIKKLNELC 87 (263)
Q Consensus 61 d~q~le~aLe~cg--ndlDaAIksL~~L~ 87 (263)
+|.|+|.+|.+|- |||-.||+-|.-+.
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5889999999996 89999999987763
No 299
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.81 E-value=4.5e+02 Score=23.77 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.7
Q ss_pred ccHHHHHHHHhhhcc
Q 024726 74 ADLDSTIKKLNELCS 88 (263)
Q Consensus 74 ndlDaAIksL~~L~L 88 (263)
.|++.|.+.+.++.-
T Consensus 59 ~d~~~a~~~i~~~~~ 73 (262)
T PF14257_consen 59 KDVEKAVKKIENLVE 73 (262)
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999999855
No 300
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=25.68 E-value=5e+02 Score=23.93 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHh-hHH----HHHhcHHHHHHHHHHHHHHHH
Q 024726 140 TSATSMDDARARASRVLEILEKSIMARA-SDE----AAQSFQKENATLKEQIETVIR 191 (263)
Q Consensus 140 ~~Asd~dDAraRAsRvLEafEksi~~ra-~ae----~~~~~~~E~~~lk~ql~~l~~ 191 (263)
.+++.+.|||.|=.-|.+.=|++...-= +-| -...+..+...|+++.+++..
T Consensus 43 ~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~ 99 (214)
T PRK11166 43 EAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFA 99 (214)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3667788898886666666666543311 111 123355566667776665544
No 301
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.43 E-value=3.2e+02 Score=21.07 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
.+-..+-.|.| |.+..-...+++-.+..=+++-+++|+.||.++-..+-.|+.
T Consensus 25 d~~~~~~~lk~-Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 25 DLDTATGSLKH-KLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555 444443444444445555667777777777777766665554
No 302
>PHA01750 hypothetical protein
Probab=25.34 E-value=3.3e+02 Score=21.30 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 188 TVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 188 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
-..+=++.||.||.-= =++|+++..-|++.+|--.+..++||+.+..
T Consensus 24 lYlKIKq~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 24 LYLKIKQALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445556777777532 2467777788888888888888888877653
No 303
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.24 E-value=4.6e+02 Score=24.07 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 178 ENATLKEQIETVIRENSIL----KRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iL----KRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
|+..||.++..+-.+.... ...-...+.+..+.+.-..|++..+.-++..+++|-.||..+-.|+--+..+
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 6666776665544333322 2222344567778888889999999889999999999999998888877765
No 304
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=25.21 E-value=2.3e+02 Score=29.78 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 024726 145 MDDARARASRVLEILEKSIMA 165 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ 165 (263)
+.....+--+-++.+|.-|..
T Consensus 515 Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 515 LERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777766654
No 305
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=25.19 E-value=4.9e+02 Score=23.12 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 185 QIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 185 ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
++..|.+||.-|+-++. ||+ ..|.-+.+.|.+|+..|-
T Consensus 71 qi~~Lq~EN~eL~~~le-------Ehq------~alelIM~KyReq~~~l~ 108 (181)
T PF05769_consen 71 QIRQLQQENRELRQSLE-------EHQ------SALELIMSKYREQMSQLM 108 (181)
T ss_pred HHHHHHHHHHHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHH
Confidence 34566677776666552 331 224558899999988874
No 306
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.09 E-value=8.3e+02 Score=25.76 Aligned_cols=49 Identities=8% Similarity=0.268 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH-----HHHHH--hhHHHHHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 149 RARASRVLEILEK-----SIMAR--ASDEAAQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 149 raRAsRvLEafEk-----si~~r--a~ae~~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
..||++||.++=. .+..+ .+..+.+-++++...++.+++....+-.-+|
T Consensus 239 P~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 239 PQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678887776533 23332 2222334455555555555555544433333
No 307
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=24.97 E-value=1.3e+02 Score=27.35 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
++|..+| +|+| -+++++ ..+|-+...+|+.++++||.+-
T Consensus 158 qll~~vv--~~e~-PeLe~~---r~~L~~~~~~~k~~L~~lEd~l 196 (228)
T PF12781_consen 158 QLLSIVV--KHER-PELEEQ---RNELLKEIAENKIQLKELEDQL 196 (228)
T ss_dssp HHHHHHH--HHHC-HHHHHH---HHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHH--HHHh-HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665 5554 556544 3445456889999999999864
No 308
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=24.87 E-value=2.9e+02 Score=20.40 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQY 227 (263)
Q Consensus 215 ~E~q~Lkqlv~qy 227 (263)
++..+|+.++-||
T Consensus 47 ~qN~eLr~lLkqY 59 (60)
T PF14775_consen 47 QQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHhh
Confidence 3344455566666
No 309
>PRK00106 hypothetical protein; Provisional
Probab=24.78 E-value=8.1e+02 Score=25.53 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 024726 148 ARARASRVL 156 (263)
Q Consensus 148 AraRAsRvL 156 (263)
|+..|..++
T Consensus 40 A~~~A~~Il 48 (535)
T PRK00106 40 AEQEAVNLR 48 (535)
T ss_pred HHHHHHHHH
Confidence 334444333
No 310
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=24.73 E-value=72 Score=23.07 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 024726 137 KEMTSATSMDDARARASRVLEILEKSIMA 165 (263)
Q Consensus 137 ~EM~~Asd~dDAraRAsRvLEafEksi~~ 165 (263)
.||...--+. ..=|.+||+-|.|+|.+
T Consensus 20 Deli~~~~I~--p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 20 DELIQEGKIT--PQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHTTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 4555444444 24589999999999976
No 311
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=24.59 E-value=4e+02 Score=24.06 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 024726 196 LKRAVAIQHERQKDYENRNREV---------EYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSS 252 (263)
Q Consensus 196 LKRAv~IQheR~~e~e~~~~E~---------q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~ 252 (263)
.||--..|-.|+.++..+.+++ +-..++...|+++++.|+. -.+-+++-....+
T Consensus 114 ikrL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~~---Ei~~~v~~~~~~~ 176 (185)
T PF08703_consen 114 IKRLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLPQ---EIRESVQECMKEG 176 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhc
Confidence 3444455666666665544332 2234678899999999988 3455666666544
No 312
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=24.41 E-value=1.6e+02 Score=22.68 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHH
Q 024726 155 VLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSIL 196 (263)
Q Consensus 155 vLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iL 196 (263)
+=.++|+.+.+.........+++||..--+.+.+.+.+|+++
T Consensus 24 lS~~~e~~L~~~~~~~~~~~W~~eN~eai~~~n~~ve~~G~~ 65 (72)
T PRK13710 24 ISGLVNTAMQNEARRLRAERWKAENREGMAEVARFIEMNGSF 65 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345677888887777777889999988888888888888765
No 313
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.38 E-value=1.7e+02 Score=25.33 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEINNYALS 242 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~ 242 (263)
+-|+.-.+||..|-+--....|++-.||+..|++-
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666667777776666677788889999999984
No 314
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.31 E-value=5.6e+02 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024726 214 NREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~L 234 (263)
..|+..||..+...+|+-+.|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555544444
No 315
>PHA03155 hypothetical protein; Provisional
Probab=24.31 E-value=1.1e+02 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 024726 180 ATLKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 180 ~~lk~ql~~l~~eN~iLKRAv~I 202 (263)
+.|..+|.+|.-||.-||+.+.-
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667788888888888888753
No 316
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.26 E-value=9.6e+02 Score=26.23 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=53.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKR----AVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKR----Av~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
..+.-|...|++...++..|-.+--+ -|+-=++... |........++|.+-+.+|++.+..++.+=.+....++-
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34667888888888888887553322 2222222221 333445667889999999999999999998888888877
Q ss_pred hhc
Q 024726 248 AQQ 250 (263)
Q Consensus 248 A~~ 250 (263)
++.
T Consensus 554 s~e 556 (739)
T PF07111_consen 554 STE 556 (739)
T ss_pred HHH
Confidence 654
No 317
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.23 E-value=4.8e+02 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSS 252 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~ 252 (263)
.+.+..|..--..+..+|.+|+..++.|+-.+.+.....
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPG 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344555555666677788889999999999888865433
No 318
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=24.00 E-value=1.7e+02 Score=30.24 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQY 227 (263)
Q Consensus 215 ~E~q~Lkqlv~qy 227 (263)
.+..||.+||.||
T Consensus 126 akIeQLNrLVqQy 138 (488)
T PF06548_consen 126 AKIEQLNRLVQQY 138 (488)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 319
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.95 E-value=3.6e+02 Score=24.94 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 146 DDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 146 dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
+|-=.|..|+++.--.+..+--. ..+.++.|+..|+.++|.+.++..-++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~--ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQ--QLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45445666777666555554332 256688899999999888887765443
No 320
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=2.2e+02 Score=29.19 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=39.4
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
+.+.+|+..|+.|- ++||.||--- |.| +..|+.-+.||..-||+.|..|.+|.+.-.|
T Consensus 18 qklaqeysklraqa-------kvlke~viee--~gk--------~~kl~eelk~k~a~irrieaendsl~frndq 75 (637)
T KOG4421|consen 18 QKLAQEYSKLRAQA-------KVLKEAVIEE--QGK--------EAKLREELKQKAASIRRIEAENDSLGFRNDQ 75 (637)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHH--hcc--------hhHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence 44555666555544 8899988532 322 2234556778999999999999999876555
No 321
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.85 E-value=4.5e+02 Score=22.28 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=56.9
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
..+..++..+-.+|..|.+-|..|-.=|-.-.++.++......+.....+.+.+++.+|..||..=-...-+|+.++
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33566777777788888888888888888888888888777777777667777788888887776555555555543
No 322
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.85 E-value=7.3e+02 Score=28.27 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 190 IRENSILKRAVAIQHERQKDYE----NRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 190 ~~eN~iLKRAv~IQheR~~e~e----~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
-+|--.+|-|+.+-+.|..+-. ++.+-+-.+++++.+.|+|++-|--.|.++--.++
T Consensus 496 reEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~ 556 (1243)
T KOG0971|consen 496 REELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQ 556 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence 3444566677766665554332 46677888899999999999988777776654433
No 323
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.82 E-value=9.4e+02 Score=25.93 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQ---YQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~q---yqEqir~LE~~NYaL~~HL~q 247 (263)
..++...+.+++++|.+||..||+-+--+- ++.+....++.+++.-+.+ -.-.|+.++..+|.|..-|+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888887664442 3444444444444433321 112345566777777776654
No 324
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=23.76 E-value=7e+02 Score=25.82 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=5.9
Q ss_pred HHhHHHHHHHH
Q 024726 191 RENSILKRAVA 201 (263)
Q Consensus 191 ~eN~iLKRAv~ 201 (263)
-||+.|-+|+-
T Consensus 442 LEnahLaqalE 452 (593)
T KOG4807|consen 442 LENAHLAQALE 452 (593)
T ss_pred HHHHHHHHHHH
Confidence 35555555553
No 325
>PF15456 Uds1: Up-regulated During Septation
Probab=23.63 E-value=4.4e+02 Score=22.11 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 169 DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQK--------------DYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 169 ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~--------------e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
-|.++.+++|...|..+++.+.+--.+.++-=.--|...+ .......|+.++.+-|+++..++-.+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567778888888888888777655544433222222211 12345578888999999999999999
Q ss_pred HhhhHHHHHHHH
Q 024726 235 EINNYALSMHLK 246 (263)
Q Consensus 235 E~~NYaL~~HL~ 246 (263)
|..---++..|-
T Consensus 101 e~R~~~~~~rLL 112 (124)
T PF15456_consen 101 ENRLAEVRQRLL 112 (124)
T ss_pred HHHHHHHHHHHH
Confidence 877665555543
No 326
>COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]
Probab=23.48 E-value=1.6e+02 Score=23.51 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHH
Q 024726 146 DDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSIL 196 (263)
Q Consensus 146 dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iL 196 (263)
.+||++.--|=-+.|..|..-....++..+|.||..--.-..++...|+++
T Consensus 23 e~Ar~~~lNiS~~~et~ia~e~~k~~t~~WqeEN~EaiA~~n~~vd~~G~~ 73 (80)
T COG5302 23 ERARALGLNISALAETAIAAELRKSATDRWQEENAEAIATGNRFVDVNGLF 73 (80)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCh
Confidence 467777766777788888887777788889999988777777777777654
No 327
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.43 E-value=8.1e+02 Score=25.07 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=6.6
Q ss_pred chHHHHHHhhCCC
Q 024726 47 PQLLDRLRAFFPQ 59 (263)
Q Consensus 47 ~~~~~~L~~lFP~ 59 (263)
|.++..|...||+
T Consensus 218 P~l~~~~~~~~P~ 230 (569)
T PRK04778 218 PELLKELQTELPD 230 (569)
T ss_pred HHHHHHHHHHhhH
Confidence 3445555555553
No 328
>PRK04325 hypothetical protein; Provisional
Probab=23.42 E-value=3.4e+02 Score=20.69 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
+.+|..+|.+-|.+|.+|+..-=.|.-.|+...
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555666777777777777776556655666654
No 329
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=23.36 E-value=1e+02 Score=27.89 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=32.5
Q ss_pred chHHHHHHhhCC----CCCHHHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 47 PQLLDRLRAFFP----QLEPQLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 47 ~~~~~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
..+...|..++. .+++..++...+.||.|+..++..|..+.
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556666666543 58899999999999999999998887654
No 330
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.36 E-value=6.3e+02 Score=23.76 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhHHH---HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEA---AQSFQKENATLKEQIETVIRENSILKRAVAIQH 204 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~---~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQh 204 (263)
-+|+++|+-+.----+++ ...+..++..|...++.|..+-.--+.-+..++
T Consensus 161 vLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 161 VLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688888888777544432 223444444444444444444444444444443
No 331
>PTZ00464 SNF-7-like protein; Provisional
Probab=23.35 E-value=5.7e+02 Score=23.27 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHH--HHHhHHHHHHHHHH
Q 024726 142 ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETV--IRENSILKRAVAIQ 203 (263)
Q Consensus 142 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l--~~eN~iLKRAv~IQ 203 (263)
..+++||-.+--.-++.++|=|. .+.+|....|+++... ..+|..=.||..+-
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~---------~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~L 67 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARIN---------KIDAELMKLKEQIQRTRGMTQSRHKQRAMQLL 67 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 34577777666666777777662 2566666666666433 22333334444444
No 332
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.33 E-value=7.1e+02 Score=24.35 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSS 252 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~ 252 (263)
|+..+...|.-|..-+.-.-.||.+||...--+.-.|..+++..
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666777777777778899999999999999998877644
No 333
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=23.33 E-value=2e+02 Score=21.83 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 49 LLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 49 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
+|..|..+--.-.++=+-.+|.+||.|-|.|..+|..+
T Consensus 8 ~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 8 TVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 34445544444344557789999999999999998763
No 334
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=23.19 E-value=5.7e+02 Score=28.29 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~L 234 (263)
..++++|+...+|..||-.|
T Consensus 541 ~~l~~~kk~~l~y~~Qla~~ 560 (833)
T COG5281 541 KALLEHKKETLEYTSQLAEL 560 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999998776
No 335
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=23.10 E-value=3.3e+02 Score=20.61 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Q 024726 181 TLKEQIETVIRENSILKRAVAIQH-ERQKDYENRNREVEYQKH 222 (263)
Q Consensus 181 ~lk~ql~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~E~q~Lkq 222 (263)
.|++||..+..-+.-| .+-+|| ||.+-.+.--.|++.+.+
T Consensus 5 ~L~~QLd~I~~~K~~l--~ik~~H~Ekl~kitK~p~El~~i~~ 45 (62)
T PF06034_consen 5 SLTQQLDEINQMKRQL--TIKSQHWEKLKKITKNPKELQEIEK 45 (62)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 4677777665544432 456677 787776655566666543
No 336
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=22.91 E-value=5e+02 Score=23.39 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=15.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHH
Q 024726 141 SATSMDDARARASRVLEILEKSI 163 (263)
Q Consensus 141 ~Asd~dDAraRAsRvLEafEksi 163 (263)
.+..+.|||.|=.-|.+.=|++.
T Consensus 32 ~~~~ipdA~~rL~yV~~~TE~AA 54 (214)
T PF04344_consen 32 AAEEIPDARDRLNYVITMTEQAA 54 (214)
T ss_dssp TTTTHHHHHHHTTTHHHHHHHTT
T ss_pred HHhhCccHHHHHHHHHHHHHHHH
Confidence 57789999999665555555543
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.82 E-value=3.8e+02 Score=28.76 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-----HHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Q 024726 150 ARASRVLEILEK-----SIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQK-DYENRNREVEYQKHM 223 (263)
Q Consensus 150 aRAsRvLEafEk-----si~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~q~Lkql 223 (263)
.|+.++|..+.. |..+|.-.++.+.++.+...|+..++.+.+...-.++-+.-|..+++ .+.=-..+...++++
T Consensus 614 ~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~i 693 (717)
T PF10168_consen 614 KRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEI 693 (717)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 024726 224 VSQYQEQLRTL 234 (263)
Q Consensus 224 v~qyqEqir~L 234 (263)
+.|--++|+.|
T Consensus 694 L~~~~~~I~~~ 704 (717)
T PF10168_consen 694 LKQQGEEIDEL 704 (717)
T ss_pred HHHHHHHHHHH
No 338
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.71 E-value=7.7e+02 Score=24.83 Aligned_cols=69 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQE--------------QLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqE--------------qir~LE~~NYaL~~HL~q 247 (263)
|+..+..+...|-=|+..-.--.+||+|-+..+-..++|+.-+.+.++ =|+.++..|--|.|.|+.
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred hhc
Q 024726 248 AQQ 250 (263)
Q Consensus 248 A~~ 250 (263)
.++
T Consensus 153 l~~ 155 (401)
T PF06785_consen 153 LQQ 155 (401)
T ss_pred HHH
No 339
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.69 E-value=3.5e+02 Score=20.53 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
+..|+..|++++..+.+.|.+-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~ 25 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHE 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777776544
No 340
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=22.51 E-value=7.5e+02 Score=24.35 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 51 DRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 51 ~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
..|-.+-|+-=.+--..=|-.|--.-|.++|...+
T Consensus 36 ~fLvg~CPHDlF~nTk~dlg~C~kvHd~~lk~~Ye 70 (319)
T KOG0796|consen 36 SFLVGFCPHDLFQNTKMDLGPCPKVHDEALKADYE 70 (319)
T ss_pred HHHhCCCcHHHhhhhhcccCcccchhhHHHHHHHh
Confidence 55666666543333333366777778888887776
No 341
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.36 E-value=3.1e+02 Score=26.24 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=10.6
Q ss_pred ccHHHHHHHHhhhccccc
Q 024726 74 ADLDSTIKKLNELCSRSD 91 (263)
Q Consensus 74 ndlDaAIksL~~L~L~~a 91 (263)
.|+..--|.|..+.||+.
T Consensus 17 sDvE~iSkalQr~aLG~e 34 (290)
T COG4026 17 SDVEVISKALQRLALGSE 34 (290)
T ss_pred chHHHHHHHHHHhhhccc
Confidence 355555555666677764
No 342
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=22.32 E-value=1.2e+02 Score=32.02 Aligned_cols=57 Identities=16% Similarity=0.316 Sum_probs=44.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCcchHHHHHHhhC---C-CCCHHHHHHHHHHhcccHHHHHHHHhhhccc
Q 024726 25 RVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFF---P-QLEPQLLERALEECNADLDSTIKKLNELCSR 89 (263)
Q Consensus 25 R~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lF---P-~md~q~le~aLe~cgndlDaAIksL~~L~L~ 89 (263)
|.||- .++|.++.+ ..+...|..++ . .+++..++.+.+.||.|+..|+.-|..|...
T Consensus 167 ~SRcq---~ieF~~Ls~-----~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 167 ISRCQ---RYNFKKLNN-----SELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTF 227 (605)
T ss_pred Hhhhh---hcccCCCCH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 55674 567777433 66777788754 3 5899999999999999999999999997653
No 343
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.28 E-value=9.8e+02 Score=25.59 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.7
Q ss_pred HHhhCCC
Q 024726 53 LRAFFPQ 59 (263)
Q Consensus 53 L~~lFP~ 59 (263)
+..++|.
T Consensus 147 ~~~~~~~ 153 (1164)
T TIGR02169 147 FISMSPV 153 (1164)
T ss_pred HHCCCHH
Confidence 3333443
No 344
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.28 E-value=6.4e+02 Score=24.70 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=8.4
Q ss_pred HhcHHHHHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIET 188 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~ 188 (263)
..++.+...|+.++..
T Consensus 278 ~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 278 IATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555443
No 345
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=22.23 E-value=29 Score=35.03 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
++-+|+....|...|+....||..+..++.-...-.. ..+....+|.+|.+.|..|++.|.++-.+.
T Consensus 458 ~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~I 525 (539)
T PF10243_consen 458 MDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANI 525 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777888888888877666544322222 344567888889899999999988876553
No 346
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.10 E-value=81 Score=30.44 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCcchHHHHHHhhC----CCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 33 PSKFTPPPPPTTTAPQLLDRLRAFF----PQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 33 p~r~~~~~~~~~~~~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
.++|.|... .++...|..++ -.++++.++.+.+.+|.|+..|+.-|..|.+
T Consensus 180 ~v~f~~l~~-----~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 180 RFNFKRIPL-----EEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIA 234 (397)
T ss_pred HhhcCCCCH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 466666322 56666777765 4699999999999999999999999998754
No 347
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.08 E-value=5.6e+02 Score=24.11 Aligned_cols=54 Identities=24% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 196 LKRAVAIQHERQKDYENRNREVEYQKHMV---SQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 196 LKRAv~IQheR~~e~e~~~~E~q~Lkqlv---~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
..+-|.-.-+..+++.+...|.+.||..+ .+++..+..||..|=.|+--|--..
T Consensus 54 p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 54 PFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34444444445556655556666666555 4556677888888888876665444
No 348
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=21.99 E-value=1e+02 Score=25.61 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~I 202 (263)
...|...||.+...|..||+.||==+-|
T Consensus 70 ~~~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 70 SGREVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888999999999999854333
No 349
>PRK12704 phosphodiesterase; Provisional
Probab=21.93 E-value=8.8e+02 Score=24.91 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 024726 146 DDARARASRVLE 157 (263)
Q Consensus 146 dDAraRAsRvLE 157 (263)
.+|+..|..+++
T Consensus 34 ~~Ae~eAe~I~k 45 (520)
T PRK12704 34 KEAEEEAKRILE 45 (520)
T ss_pred HHHHHHHHHHHH
Confidence 566776666653
No 350
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.88 E-value=3.1e+02 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 210 YENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 210 ~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
+...+.++.++++-..+++++|..|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444455555555554
No 351
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=21.83 E-value=3.9e+02 Score=25.48 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024726 221 KHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 221 kqlv~qyqEqir~LE~~ 237 (263)
+.++..||++||+.|+.
T Consensus 87 ~~~~~~~q~~vRq~E~~ 103 (292)
T PF11981_consen 87 AELVQRLQDAVRQREQQ 103 (292)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788999999999986
No 352
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.79 E-value=3.9e+02 Score=22.98 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=37.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLE--INNYALSM 243 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE--~~NYaL~~ 243 (263)
..|.+....|+++++.+.......+..+.. |+.+. +..|+++|-|....=+.|| +.+|+|++
T Consensus 18 ~QLekqi~~l~~kiek~r~n~~drl~siR~-------ye~Ms--~~~l~~llkqLEkeK~~Le~qlk~~e~rL 81 (129)
T PF15372_consen 18 DQLEKQIIILREKIEKIRGNPSDRLSSIRR-------YEQMS--VESLNQLLKQLEKEKRSLENQLKDYEWRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccHHHHH-------Hhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888887777766666665555 43332 2446666666666666665 34566554
No 353
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=21.72 E-value=9.5e+02 Score=25.25 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024726 170 EAAQSFQKENATLKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 170 e~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~ 201 (263)
+....++.++..|...+..|..++.+|..-+.
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888898888899999988887664
No 354
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.67 E-value=5.2e+02 Score=25.28 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=21.5
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Q 024726 174 SFQKENATLKEQIETVIRENSILKR-AVAIQ 203 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLKR-Av~IQ 203 (263)
.+..|...+|.+...|..+|.-||. +|.||
T Consensus 38 ~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 38 VLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777888888887776 46666
No 355
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=21.65 E-value=4.2e+02 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
+++....+++.++.-+.+.+.+++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (265)
T TIGR00999 55 EFESAEYALEEAQAEVQAAKSELRSA 80 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444444433
No 356
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.62 E-value=6.4e+02 Score=23.19 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHhH
Q 024726 129 AEWVELFVKEMTSATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIE-TVIRENSILKRAVAIQHERQ 207 (263)
Q Consensus 129 ~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~-~l~~eN~iLKRAv~IQheR~ 207 (263)
-.-++.-+++|-. ++.+||.=.+.++--. |. -....+..+.....+..+-. +|..-|.-|=|.+.+.-...
T Consensus 26 ~~~l~Q~ird~~~--~l~~ar~~~A~~~a~~-k~-----~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~l 97 (225)
T COG1842 26 EKMLEQAIRDMES--ELAKARQALAQAIARQ-KQ-----LERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSL 97 (225)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3667777777764 4555555444443211 11 11111222333333333322 33334444444444432222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 208 K-DYENRNREVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 208 ~-e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
. ......++++++...+.+...+|..||...--|
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233455666666667777777777776654433
No 357
>PLN02902 pantothenate kinase
Probab=21.62 E-value=3.9e+02 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=28.1
Q ss_pred hhHHHHHHH------HHhcCC--CcHHHHHHHHHHHHHHHHHHHH
Q 024726 129 AEWVELFVK------EMTSAT--SMDDARARASRVLEILEKSIMA 165 (263)
Q Consensus 129 ~eWVEl~V~------EM~~As--d~dDAraRAsRvLEafEksi~~ 165 (263)
..|++.|.+ |-..|+ +.+||..||.+.=++|..-...
T Consensus 523 ~yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~~~L~~ 567 (876)
T PLN02902 523 EYWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLAR 567 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999943 333344 7899999999988888776655
No 358
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.61 E-value=7.7e+02 Score=24.15 Aligned_cols=49 Identities=16% Similarity=0.378 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVI-----RENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~-----~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEq 230 (263)
+..|+..+..|++.++ .|..++++-+.+-|+...- +.+|++++...++.
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~K-------IR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAK-------IRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHhhcc
Confidence 4455556666666665 4567888888888765333 34444455555543
No 359
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=21.51 E-value=5.2e+02 Score=23.10 Aligned_cols=20 Identities=35% Similarity=0.167 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024726 217 VEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~ 236 (263)
+..+|+.|-+.|.+|-+||.
T Consensus 41 v~gik~~V~~L~aRV~alE~ 60 (204)
T PF00517_consen 41 VWGIKQGVKQLQARVLALER 60 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHHHHHH
Confidence 55788888888888888886
No 360
>PRK14127 cell division protein GpsB; Provisional
Probab=21.39 E-value=2.1e+02 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE 235 (263)
.|+..|+.-+.+|+.|+...+
T Consensus 51 ~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 51 QENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 345556666666776666544
No 361
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=21.35 E-value=7.5e+02 Score=23.94 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024726 216 EVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 216 E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.++++.++=.+|++|++.|+.
T Consensus 84 r~~~~~~i~~~~~~q~~~l~~ 104 (332)
T TIGR01541 84 RLDARLQIDRTFRKQQRDLNK 104 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444
No 362
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.33 E-value=1.3e+03 Score=26.60 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
..+|+.-.-=..-+-|+|+.++|++.+|+.+.+-..+++.|+..+-.|..-+..
T Consensus 808 ~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 808 KELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444544333222234677777888888888888888888888777776655543
No 363
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.33 E-value=31 Score=35.96 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=0.0
Q ss_pred hcHHHH--HHHHHHHHHHHHHhHHHHHHHHHH-HHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 174 SFQKEN--ATLKEQIETVIRENSILKRAVAIQ-HERQ----KDYENRNREVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 174 ~~~~E~--~~lk~ql~~l~~eN~iLKRAv~IQ-heR~----~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
.+..|. ..+++.+.+|.+||..||..+.-. .++. ...++.++....|..-.....+++..|+...-.|
T Consensus 447 ~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 447 NLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred chhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 357889999999999998765443 2222 2333333333333333333344444444443333
No 364
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.28 E-value=4.1e+02 Score=26.14 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=21.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024726 185 QIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVS 225 (263)
Q Consensus 185 ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~ 225 (263)
..-.+.+||.-||+-++....+...+++..+|...|+.++.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455555555555555444454555555555554554443
No 365
>PF14282 FlxA: FlxA-like protein
Probab=21.23 E-value=4.4e+02 Score=21.17 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=5.9
Q ss_pred cHHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIET 188 (263)
Q Consensus 175 ~~~E~~~lk~ql~~ 188 (263)
|++....|+++|..
T Consensus 24 L~~Qi~~Lq~ql~~ 37 (106)
T PF14282_consen 24 LQKQIKQLQEQLQE 37 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 366
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.23 E-value=7.7e+02 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
+..++..++.|+.+|.--+...|..+|.+=.-|.=|+.||..+.
T Consensus 225 k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 225 KTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33456566777888777778888888888888888888887764
No 367
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.20 E-value=1e+03 Score=26.79 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=5.5
Q ss_pred HHHHHHHhc
Q 024726 65 LERALEECN 73 (263)
Q Consensus 65 le~aLe~cg 73 (263)
|....++|-
T Consensus 235 Lk~FY~~~S 243 (980)
T KOG0980|consen 235 LKQFYADCS 243 (980)
T ss_pred HHHHHHhcc
Confidence 555666674
No 368
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=21.17 E-value=1.8e+02 Score=31.23 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHH---HHhHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVI---RENSILKRA 199 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~---~eN~iLKRA 199 (263)
-..|-|.|.|.++.+. ++.|++.||.+.++.+ +.|.+||.|
T Consensus 360 ~~aeeF~kRV~~~ia~-----~~AEIekmK~~Hak~m~k~k~~s~lk~A 403 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIAD-----MNAEIEKMKARHAKRMAKFKRNSLLKDA 403 (669)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 3578899999998877 5777887777766543 455666655
No 369
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.16 E-value=9.2e+02 Score=24.87 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
...+++...|.++ +.+..+...++.-+.-..+-..+++....+++++++.+...+.+++.|+...-+.+-+...
T Consensus 26 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~e 99 (475)
T PRK10361 26 QHAQQKAEQLAER-EEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADD 99 (475)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 370
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=21.11 E-value=6.5e+02 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
+|......|.+..+.-+.+.|.||+.||..
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333434455555556555543
No 371
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=21.09 E-value=2e+02 Score=26.13 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024726 153 SRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVS 225 (263)
Q Consensus 153 sRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~ 225 (263)
-|+|..-|-.+.+...... -.+.+....|.++|..|..+... +=.+..++|. +++..||+++.
T Consensus 8 ~RLL~rcE~la~~~~~~~~-~rl~~yv~~L~~~l~~L~~~~~~------~s~e~l~eY~---~ri~~Lk~l~~ 70 (251)
T PF09753_consen 8 RRLLSRCERLAKEKRSQNQ-WRLEKYVETLREMLEELEESLSK------PSKEVLNEYS---ERIDFLKGLIE 70 (251)
T ss_pred HHHHHHHHHHHhcccccch-HhHHHHHHHHHHHHHHHHhccCC------CCHHHHHHHH---HHHHHHHHHHh
Confidence 3677777777664333322 33688889999999999888211 1233446774 44666666553
No 372
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.97 E-value=3e+02 Score=19.22 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
...+++.|+.-..+.+.+|..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 373
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.96 E-value=8.6e+02 Score=25.56 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 024726 215 REVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
+.+.+|...+.+++.|+..||..
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~ 407 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQ 407 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555543
No 374
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=20.85 E-value=79 Score=23.87 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 024726 149 RARASRVLEILEKS 162 (263)
Q Consensus 149 raRAsRvLEafEks 162 (263)
=+||+|+++.+|+.
T Consensus 34 ynrAariid~LE~~ 47 (65)
T PF09397_consen 34 YNRAARIIDQLEEE 47 (65)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
Confidence 37999999999973
No 375
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.81 E-value=9.7e+02 Score=25.33 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
+.+|+--|..-+|+|+.|..+...|.+.++.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5567777888899999999999999988865
No 376
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=20.79 E-value=1.9e+02 Score=30.94 Aligned_cols=63 Identities=27% Similarity=0.398 Sum_probs=36.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 170 EAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 170 e~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
..+++++.-+..+|+||..+..+ |++|=+-- --++...--.++..++..+.+.+|||..||+.
T Consensus 636 ~smekl~~kI~~~keql~e~~~~---l~~ak~~~--~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q 698 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAE---LKSAKADE--KKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQ 698 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhhccc--cccccccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 35566777777777776554433 33332210 00111111236777888899999999999864
No 377
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.58 E-value=8.2e+02 Score=27.06 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHH
Q 024726 143 TSMDDARARASRVLEILEKSIMARASDEAAQSFQKEN 179 (263)
Q Consensus 143 sd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~ 179 (263)
-|+.||..|=-++=|+|..++..-++.+++..+=+|.
T Consensus 496 G~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eL 532 (851)
T TIGR02302 496 GDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKL 532 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7899999999999999999999998887765554443
No 378
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=20.57 E-value=8.6e+02 Score=26.39 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
|.+...-|+...||.-...|||||.||..--.++--+--|
T Consensus 337 E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 337 EKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678888889999999999999998876666555444
No 379
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.55 E-value=4.2e+02 Score=20.64 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024726 214 NREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE 235 (263)
.+-+.++|.=++--+.+||.|.
T Consensus 56 ~~~l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 56 TKLLKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666777777777665
No 380
>smart00338 BRLZ basic region leucin zipper.
Probab=20.55 E-value=3.3e+02 Score=19.50 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEINNYALS 242 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~ 242 (263)
...+++.|.......+.+|..|+..|..|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554443
No 381
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=20.52 E-value=2.8e+02 Score=30.00 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024726 151 RASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQY 227 (263)
Q Consensus 151 RAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qy 227 (263)
|+--++-++--.|.+-.... .-+|.+..++++++.|..| +|+- |-.=|+++|....|...||+++-+-
T Consensus 203 k~~~~~A~L~~~~~~~~ts~---E~~K~~vs~~e~i~~LQeE--~l~t----Q~kYQreLErlEKENkeLr~lll~k 270 (980)
T KOG0447|consen 203 RKGLLGALLLLQIQEESTSY---EQQKRKVSDKEKIDQLQEE--LLHT----QLKYQRILERLEKENKELRKLVLQK 270 (980)
T ss_pred hhhhHHHHHHHHHhhccCCH---HHHhhhhhHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 44444444544444433322 2467888899999988876 4443 3333467777777788888777553
No 382
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=20.46 E-value=2e+02 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcH
Q 024726 142 ATSMDDARARASRVLEILEKSIMARASDEAAQSFQ 176 (263)
Q Consensus 142 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~ 176 (263)
|.|-+=-+.||..+.++||.+|.+......++.+.
T Consensus 27 ~~d~~fI~~Rad~Aa~aYe~A~~~G~~~~~A~e~A 61 (144)
T PF08989_consen 27 AGDTEFIEERADMAAEAYEQAVRSGYSHDEAEEIA 61 (144)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHT--HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44555568899999999999999987776555433
No 383
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=20.38 E-value=1.3e+02 Score=29.07 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=39.3
Q ss_pred cccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 24 KRVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 24 KR~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
=|.||. .++|.|+. .+.....|...++..+...+..++.-||.+.-.|+.-+..
T Consensus 188 i~SRc~---~i~l~~l~-----~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 188 IRSRCR---KLRLRPLA-----PEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLAGG 241 (365)
T ss_pred hhccce---EEECCCCC-----HHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 466774 56676632 3677778888888877776678888888888888877653
No 384
>PRK09609 hypothetical protein; Provisional
Probab=20.34 E-value=2.9e+02 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
.+.+++.+.-|+++++.+|..||-.
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~~~~~ 164 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKTNEEK 164 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 5668889999999999999777653
No 385
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.26 E-value=3.2e+02 Score=21.43 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 200 VAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 200 v~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
++.|- +..++.|.-|.+....+++-|+|+|.|
T Consensus 17 ~AfQE---~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 17 LAFQE---QTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44553 344455666777777899999999876
No 386
>PHA00276 phage lambda Rz-like lysis protein
Probab=20.08 E-value=4.7e+02 Score=22.99 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 221 KHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 221 kqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
-++-.+||+.+--.|-.|-.|.-.|+.
T Consensus 55 aal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 55 NAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 346788999888888888888877775
Done!