Query 024726
Match_columns 263
No_of_seqs 68 out of 70
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 13:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhy_A CUE domain-containing p 99.0 5.4E-10 1.8E-14 83.3 6.9 44 47-90 19-62 (67)
2 1wgl_A TOLL-interacting protei 99.0 3.5E-10 1.2E-14 82.2 5.3 46 46-91 9-54 (59)
3 1p3q_Q VPS9P, vacuolar protein 97.9 2.7E-06 9.2E-11 61.2 1.4 40 47-86 13-52 (54)
4 1otr_A Protein CUE2; protein-p 97.7 4.6E-05 1.6E-09 53.6 4.4 40 47-86 5-44 (49)
5 2di0_A Activating signal coint 96.3 0.0057 1.9E-07 46.1 5.2 39 47-85 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 95.9 0.12 4.3E-06 39.7 10.9 69 154-234 6-74 (81)
7 1vej_A Riken cDNA 4931431F19; 95.2 0.047 1.6E-06 41.1 6.3 38 46-85 29-67 (74)
8 1vg5_A RSGI RUH-014, rhomboid 95.2 0.074 2.5E-06 39.8 7.3 39 45-85 28-66 (73)
9 1z96_A DNA-damage, UBA-domain 95.0 0.039 1.3E-06 35.4 4.8 35 47-83 5-39 (40)
10 2jy5_A Ubiquilin-1; UBA, alter 94.7 0.082 2.8E-06 36.7 6.0 37 47-85 13-50 (52)
11 2g3q_A Protein YBL047C; endocy 93.9 0.074 2.5E-06 35.0 4.3 37 47-85 5-41 (43)
12 2v66_B Nuclear distribution pr 93.8 0.72 2.5E-05 37.2 10.6 70 178-247 4-74 (111)
13 2v71_A Nuclear distribution pr 93.4 0.89 3E-05 39.6 11.3 74 175-248 54-128 (189)
14 2knz_A Ubiquilin-4; cytoplasm, 93.3 0.078 2.7E-06 36.9 3.7 36 48-85 13-49 (53)
15 2dae_A KIAA0733 protein; mitog 92.8 0.087 3E-06 40.0 3.6 39 47-85 11-49 (75)
16 2cpw_A CBL-interacting protein 92.6 0.45 1.5E-05 34.3 7.0 37 47-85 20-57 (64)
17 2dah_A Ubiquilin-3; UBA domain 92.0 0.38 1.3E-05 33.7 5.8 38 47-86 10-48 (54)
18 2ejs_A Autocrine motility fact 91.6 0.34 1.2E-05 35.0 5.4 41 47-88 14-54 (58)
19 1ify_A HHR23A, UV excision rep 91.5 0.21 7.1E-06 34.2 4.0 37 47-85 9-45 (49)
20 2bwb_A Ubiquitin-like protein 91.2 0.34 1.2E-05 32.9 4.8 37 47-85 8-45 (46)
21 1wji_A Tudor domain containing 90.9 0.37 1.3E-05 34.8 4.9 37 47-85 10-46 (63)
22 1wj7_A Hypothetical protein (R 89.8 0.45 1.6E-05 38.0 5.1 37 48-85 41-77 (104)
23 1wr1_B Ubiquitin-like protein 89.5 0.58 2E-05 33.4 4.9 37 47-85 18-55 (58)
24 2dak_A Ubiquitin carboxyl-term 89.2 0.73 2.5E-05 32.8 5.3 37 47-85 10-46 (63)
25 2ekf_A Ancient ubiquitous prot 88.9 0.57 1.9E-05 34.2 4.6 42 46-88 13-54 (61)
26 3hnw_A Uncharacterized protein 88.7 4.8 0.00017 33.0 10.7 96 129-238 34-133 (138)
27 1veg_A NEDD8 ultimate buster-1 88.3 0.86 2.9E-05 34.9 5.5 38 46-85 29-66 (83)
28 4g3o_A E3 ubiquitin-protein li 88.1 0.87 3E-05 33.0 5.1 38 47-85 18-55 (58)
29 2dag_A Ubiquitin carboxyl-term 87.7 1.9 6.4E-05 31.9 6.9 39 46-86 9-48 (74)
30 2cp9_A EF-TS, EF-TSMT, elongat 87.6 0.34 1.2E-05 35.6 2.7 39 47-86 10-48 (64)
31 3oja_B Anopheles plasmodium-re 87.5 14 0.00046 35.0 14.4 75 173-250 505-579 (597)
32 1whc_A RSGI RUH-027, UBA/UBX 3 87.3 1.4 5E-05 31.5 5.9 39 46-86 9-48 (64)
33 1wiv_A UBP14, ubiquitin-specif 86.0 1.5 5E-05 32.4 5.5 38 46-85 29-66 (73)
34 1dv0_A DNA repair protein HHR2 86.0 0.34 1.2E-05 33.0 1.9 37 47-85 5-41 (47)
35 2dai_A Ubadc1, ubiquitin assoc 84.6 2 6.9E-05 32.5 5.8 39 46-86 29-67 (83)
36 2ekk_A UBA domain from E3 ubiq 84.3 2.1 7.1E-05 28.6 5.2 36 47-85 10-45 (47)
37 2dkl_A Trinucleotide repeat co 83.7 1.6 5.6E-05 33.2 5.0 41 47-89 22-62 (85)
38 2oqq_A Transcription factor HY 83.4 3.7 0.00013 28.0 6.0 36 208-246 6-41 (42)
39 2dq0_A Seryl-tRNA synthetase; 81.2 17 0.00057 34.9 12.0 97 157-262 12-114 (455)
40 1ses_A Seryl-tRNA synthetase; 81.1 9.5 0.00033 36.1 10.2 95 157-262 12-109 (421)
41 2dfs_A Myosin-5A; myosin-V, in 80.9 30 0.001 36.7 14.8 65 171-235 985-1050(1080)
42 2crn_A Ubash3A protein; compac 80.5 2.4 8.3E-05 30.5 4.6 38 47-86 10-48 (64)
43 2dna_A Unnamed protein product 80.0 1.6 5.6E-05 32.2 3.6 36 49-86 22-58 (67)
44 3qne_A Seryl-tRNA synthetase, 78.5 25 0.00085 34.3 12.4 66 175-240 38-103 (485)
45 2lbc_A Ubiquitin carboxyl-term 78.3 3.5 0.00012 32.6 5.4 38 46-85 78-115 (126)
46 1hjb_A Ccaat/enhancer binding 78.3 5.2 0.00018 30.8 6.1 41 180-230 39-79 (87)
47 1ci6_A Transcription factor AT 77.5 3.8 0.00013 29.3 4.8 40 176-225 22-61 (63)
48 1gk7_A Vimentin; intermediate 77.5 3.9 0.00013 27.1 4.5 32 215-246 6-37 (39)
49 1ci6_A Transcription factor AT 77.4 14 0.00048 26.3 7.9 29 172-200 32-60 (63)
50 1wle_A Seryl-tRNA synthetase; 76.8 49 0.0017 32.2 14.0 68 172-239 72-147 (501)
51 1vdl_A Ubiquitin carboxyl-term 76.5 7 0.00024 29.9 6.2 43 46-88 24-66 (80)
52 1hjb_A Ccaat/enhancer binding 76.2 5.6 0.00019 30.6 5.8 30 172-201 45-74 (87)
53 2zxx_A Geminin; coiled-coil, c 74.3 8.7 0.0003 29.3 6.3 44 206-249 25-68 (79)
54 4fla_A Regulation of nuclear P 73.5 38 0.0013 28.1 12.9 78 149-245 67-144 (152)
55 3oja_B Anopheles plasmodium-re 72.4 31 0.0011 32.5 11.1 34 175-208 528-561 (597)
56 1nkp_B MAX protein, MYC proto- 68.3 9.6 0.00033 28.0 5.3 24 223-246 55-78 (83)
57 2cwb_A Chimera of immunoglobul 68.3 4.6 0.00016 32.2 3.7 38 47-85 67-104 (108)
58 2w6b_A RHO guanine nucleotide 67.7 28 0.00096 25.0 7.3 20 182-201 15-34 (56)
59 1v92_A NSFL1 cofactor P47; 3-h 67.6 8.6 0.0003 24.9 4.4 38 47-85 6-43 (46)
60 1gu4_A CAAT/enhancer binding p 66.8 6.7 0.00023 29.5 4.2 23 175-197 48-70 (78)
61 1gd2_E Transcription factor PA 66.6 11 0.00039 27.8 5.3 23 175-197 48-70 (70)
62 1vek_A UBP14, ubiquitin-specif 65.8 13 0.00044 28.0 5.7 39 46-86 29-68 (84)
63 4ae4_A Ubiquitin-associated pr 65.0 5.7 0.00019 31.8 3.7 35 49-85 79-113 (118)
64 2yy0_A C-MYC-binding protein; 64.8 8.5 0.00029 26.9 4.1 28 171-198 20-47 (53)
65 1a93_B MAX protein, coiled coi 64.1 9.1 0.00031 25.0 3.8 22 214-235 13-34 (34)
66 2dfs_A Myosin-5A; myosin-V, in 63.0 40 0.0014 35.7 10.6 14 60-73 673-686 (1080)
67 2dq3_A Seryl-tRNA synthetase; 62.9 9.4 0.00032 36.1 5.4 66 175-240 35-100 (425)
68 3ghg_A Fibrinogen alpha chain; 62.3 49 0.0017 33.1 10.4 25 214-238 130-154 (562)
69 1deb_A APC protein, adenomatou 61.8 28 0.00097 24.7 6.3 45 181-228 7-51 (54)
70 1i84_S Smooth muscle myosin he 61.6 63 0.0022 34.2 11.8 14 60-73 695-708 (1184)
71 1wgn_A UBAP1, ubiquitin associ 61.5 7.3 0.00025 28.6 3.4 37 47-85 20-56 (63)
72 1uii_A Geminin; human, DNA rep 60.3 34 0.0012 26.2 7.1 21 177-197 46-66 (83)
73 1aip_C EF-TS, elongation facto 60.2 4.8 0.00016 35.2 2.6 26 65-90 21-46 (196)
74 3s4r_A Vimentin; alpha-helix, 60.0 11 0.00039 28.8 4.5 34 216-249 10-43 (93)
75 1gu4_A CAAT/enhancer binding p 59.5 12 0.00041 28.1 4.4 39 178-226 37-75 (78)
76 2v4h_A NF-kappa-B essential mo 57.7 73 0.0025 25.6 10.8 18 222-239 90-107 (110)
77 1c1g_A Tropomyosin; contractIl 57.6 71 0.0024 25.4 11.0 20 217-236 78-97 (284)
78 1xb2_B EF-TS, elongation facto 56.7 5.7 0.00019 36.4 2.6 21 65-85 22-42 (291)
79 1oai_A Nuclear RNA export fact 56.7 13 0.00045 26.3 4.0 31 58-88 18-48 (59)
80 1wlq_A Geminin; coiled-coil; 2 56.7 35 0.0012 26.2 6.6 34 208-241 31-64 (83)
81 3a7p_A Autophagy protein 16; c 55.8 92 0.0032 26.2 9.9 30 209-238 97-126 (152)
82 3iox_A AGI/II, PA; alpha helix 55.8 1.4E+02 0.0049 29.4 12.4 71 150-235 23-93 (497)
83 2j5u_A MREC protein; bacterial 55.6 7.6 0.00026 34.3 3.2 34 191-224 26-59 (255)
84 3oja_A Leucine-rich immune mol 55.2 71 0.0024 29.5 9.8 36 213-248 426-461 (487)
85 3jsv_C NF-kappa-B essential mo 55.1 66 0.0023 25.2 8.1 75 156-242 11-88 (94)
86 1uii_A Geminin; human, DNA rep 55.0 29 0.00098 26.7 5.9 23 175-197 51-73 (83)
87 2py8_A Hypothetical protein RB 54.9 48 0.0016 27.8 7.7 28 125-161 50-77 (147)
88 1dip_A Delta-sleep-inducing pe 54.8 6.8 0.00023 29.8 2.3 24 175-198 20-43 (78)
89 1t2k_D Cyclic-AMP-dependent tr 54.7 21 0.00073 24.9 4.8 37 178-224 23-59 (61)
90 2dal_A Protein KIAA0794; FAS a 54.4 21 0.00073 25.1 4.8 38 47-85 16-53 (62)
91 1c1g_A Tropomyosin; contractIl 54.0 82 0.0028 25.1 11.8 24 214-237 82-105 (284)
92 2wvr_A Geminin; DNA replicatio 53.4 37 0.0013 30.0 7.1 26 172-197 110-135 (209)
93 2d9s_A CBL E3 ubiquitin protei 52.9 43 0.0015 23.7 6.1 39 47-87 10-48 (53)
94 1go4_E MAD1 (mitotic arrest de 52.3 64 0.0022 25.4 7.7 24 178-201 13-36 (100)
95 2ooa_A E3 ubiquitin-protein li 52.3 18 0.00063 25.6 4.1 40 47-88 12-51 (52)
96 4emc_A Monopolin complex subun 52.2 46 0.0016 29.0 7.5 48 159-206 7-56 (190)
97 2wt7_A Proto-oncogene protein 52.2 24 0.00083 24.9 4.8 39 177-225 23-61 (63)
98 2cp8_A NEXT to BRCA1 gene 1 pr 50.6 12 0.00042 26.5 3.0 37 49-87 12-49 (54)
99 4ae4_A Ubiquitin-associated pr 50.5 15 0.00051 29.3 3.9 39 46-86 8-46 (118)
100 1tr8_A Conserved protein (MTH1 50.0 12 0.00042 29.3 3.2 33 50-83 69-101 (102)
101 1dip_A Delta-sleep-inducing pe 49.5 14 0.00046 28.2 3.2 31 215-245 15-45 (78)
102 3vp9_A General transcriptional 49.4 47 0.0016 25.8 6.4 15 223-237 69-83 (92)
103 3e21_A HFAF1, FAS-associated f 49.1 23 0.00078 24.0 4.0 38 45-82 4-41 (45)
104 4emc_A Monopolin complex subun 48.8 69 0.0024 27.9 8.0 46 186-234 22-67 (190)
105 3lss_A Seryl-tRNA synthetase; 48.7 2E+02 0.0068 28.0 12.9 37 224-262 113-149 (484)
106 2dam_A ETEA protein; KIAA0887, 48.6 25 0.00086 25.3 4.5 41 45-85 17-57 (67)
107 2lva_A Ubiquitin carboxyl-term 54.1 3.7 0.00013 33.9 0.0 44 47-90 19-62 (129)
108 1nkp_A C-MYC, MYC proto-oncoge 48.1 55 0.0019 24.5 6.5 25 223-247 60-84 (88)
109 2w83_C C-JUN-amino-terminal ki 48.0 88 0.003 23.7 8.5 53 184-236 9-72 (77)
110 3e7l_A Transcriptional regulat 47.6 5.6 0.00019 27.5 0.8 26 59-84 18-43 (63)
111 3na7_A HP0958; flagellar bioge 47.2 98 0.0034 26.8 9.0 51 182-232 30-84 (256)
112 2lbc_A Ubiquitin carboxyl-term 47.2 24 0.00081 27.7 4.5 38 47-86 4-42 (126)
113 4dzn_A Coiled-coil peptide CC- 46.1 43 0.0015 21.3 4.7 24 175-198 7-30 (33)
114 1gd2_E Transcription factor PA 45.8 72 0.0025 23.4 6.7 46 192-246 15-60 (70)
115 2dzl_A Protein FAM100B; UBA-li 45.5 26 0.0009 25.2 4.2 37 48-85 19-55 (66)
116 1nlw_A MAD protein, MAX dimeri 44.8 54 0.0019 24.2 6.0 8 194-201 40-47 (80)
117 3ghg_A Fibrinogen alpha chain; 44.7 2.1E+02 0.0072 28.7 11.6 101 65-211 51-151 (562)
118 3k9o_A Ubiquitin-conjugating e 44.7 26 0.00089 29.6 4.7 36 48-85 165-200 (201)
119 3tnu_A Keratin, type I cytoske 44.1 1.2E+02 0.004 24.0 8.7 21 182-202 50-70 (131)
120 3ka1_A RBCX protein; chaperone 43.9 1.1E+02 0.0037 25.1 8.0 28 124-160 49-76 (126)
121 3m9b_A Proteasome-associated A 43.7 28 0.00095 31.5 4.9 19 217-235 77-95 (251)
122 2akf_A Coronin-1A; coiled coil 43.5 51 0.0018 21.0 4.7 24 215-238 6-29 (32)
123 3hnw_A Uncharacterized protein 43.4 1.3E+02 0.0045 24.4 11.1 70 173-245 64-133 (138)
124 2oqq_A Transcription factor HY 43.1 41 0.0014 22.9 4.5 27 174-200 14-40 (42)
125 2yy0_A C-MYC-binding protein; 42.5 44 0.0015 23.2 4.8 28 208-235 19-46 (53)
126 2v4h_A NF-kappa-B essential mo 42.4 1.3E+02 0.0045 24.1 9.9 57 175-234 50-109 (110)
127 3he5_B Synzip2; heterodimeric 41.9 84 0.0029 21.7 6.7 41 179-236 5-45 (52)
128 3cvf_A Homer-3, homer protein 41.1 1.1E+02 0.0039 23.0 7.3 58 176-233 5-63 (79)
129 3hx3_A Retinaldehyde-binding p 41.0 31 0.001 30.7 4.8 30 57-86 87-116 (316)
130 1umq_A Photosynthetic apparatu 41.0 13 0.00046 27.7 2.1 25 60-84 41-65 (81)
131 4e29_A Chimeric WZZB chain len 41.0 1.6E+02 0.0053 26.3 9.4 19 223-244 144-162 (248)
132 4ath_A MITF, microphthalmia-as 40.0 88 0.003 23.9 6.5 43 194-247 32-74 (83)
133 4dzn_A Coiled-coil peptide CC- 39.7 32 0.0011 21.9 3.3 21 178-198 3-23 (33)
134 3s9g_A Protein hexim1; cyclin 39.6 1.4E+02 0.0049 23.7 10.4 69 157-242 17-85 (104)
135 1aua_A Phosphatidylinositol tr 39.0 59 0.002 28.1 6.2 40 47-86 31-76 (296)
136 3hhm_B NISH2 P85alpha; PI3KCA, 38.7 1.2E+02 0.0041 28.3 8.6 53 180-232 208-264 (373)
137 2jp7_A MRNA export factor MEX6 38.1 26 0.0009 24.7 3.1 29 58-86 17-45 (57)
138 1nkp_B MAX protein, MYC proto- 38.1 92 0.0031 22.6 6.3 41 194-234 40-80 (83)
139 1jnm_A Proto-oncogene C-JUN; B 38.0 51 0.0017 23.0 4.6 21 178-198 23-43 (62)
140 4dk0_A Putative MACA; alpha-ha 37.8 32 0.0011 30.3 4.4 49 208-256 115-163 (369)
141 3tnu_B Keratin, type II cytosk 37.5 1.5E+02 0.0051 23.3 10.2 21 182-202 48-68 (129)
142 3viq_A SWI5-dependent recombin 37.3 74 0.0025 25.6 6.1 30 174-203 4-33 (122)
143 2qsf_X RAD23, UV excision repa 36.9 40 0.0014 28.7 4.6 37 47-85 131-167 (171)
144 1t6f_A Geminin; coiled-coil, c 36.7 45 0.0015 22.0 3.8 25 173-197 10-34 (37)
145 1t6f_A Geminin; coiled-coil, c 36.3 66 0.0022 21.3 4.5 27 215-241 7-33 (37)
146 2oo9_A E3 ubiquitin-protein li 35.2 43 0.0015 23.1 3.7 35 50-86 8-42 (46)
147 1m1j_B Fibrinogen beta chain; 35.0 3.2E+02 0.011 26.5 12.8 27 215-241 168-194 (464)
148 2p22_A Suppressor protein STP2 34.4 2.2E+02 0.0074 24.3 9.8 55 195-249 36-90 (174)
149 2dgc_A Protein (GCN4); basic d 34.2 56 0.0019 23.2 4.4 23 176-198 29-51 (63)
150 2peq_A ORF134; helix bundle, p 33.9 1E+02 0.0036 25.3 6.5 28 125-161 50-77 (134)
151 1ik9_A DNA repair protein XRCC 33.6 2.3E+02 0.008 24.4 11.7 53 174-233 150-208 (213)
152 2w6b_A RHO guanine nucleotide 33.3 1.3E+02 0.0045 21.5 6.6 30 208-237 17-46 (56)
153 3mq9_A Bone marrow stromal ant 33.3 2.8E+02 0.0097 25.3 13.1 30 182-211 378-407 (471)
154 1joc_A EEA1, early endosomal a 32.8 1.8E+02 0.0061 22.8 8.8 9 238-246 48-56 (125)
155 1hlo_A Protein (transcription 32.1 58 0.002 23.6 4.3 22 217-238 59-80 (80)
156 1deq_A Fibrinogen (alpha chain 30.7 2.2E+02 0.0076 27.3 9.0 24 65-89 54-77 (390)
157 2apl_A Hypothetical protein PG 30.6 70 0.0024 27.1 5.1 38 141-178 27-64 (157)
158 1kmi_Z CHEZ, chemotaxis protei 30.2 2.7E+02 0.0091 24.0 9.2 23 141-163 44-77 (214)
159 1ntc_A Protein (nitrogen regul 30.0 8.8 0.0003 28.4 -0.5 26 59-84 50-75 (91)
160 2zxx_A Geminin; coiled-coil, c 29.9 53 0.0018 24.9 3.8 26 173-198 37-62 (79)
161 1oqy_A HHR23A, UV excision rep 29.3 25 0.00084 33.0 2.3 37 47-85 169-205 (368)
162 3efg_A Protein SLYX homolog; x 29.0 1.1E+02 0.0037 22.7 5.3 34 217-250 30-63 (78)
163 4b4t_K 26S protease regulatory 28.9 89 0.003 29.6 6.1 51 176-236 41-91 (428)
164 1oqy_A HHR23A, UV excision rep 28.6 22 0.00075 33.3 1.8 39 45-85 324-362 (368)
165 1a5t_A Delta prime, HOLB; zinc 28.5 34 0.0012 30.1 2.9 53 25-86 156-208 (334)
166 1am9_A Srebp-1A, protein (ster 28.2 1.4E+02 0.0048 21.8 5.9 20 228-247 56-75 (82)
167 3hyb_A RBCX protein; rubisco, 27.6 2.5E+02 0.0085 23.7 7.9 29 123-160 67-95 (155)
168 3i00_A HIP-I, huntingtin-inter 27.6 2.3E+02 0.008 22.5 10.3 22 172-193 17-38 (120)
169 1nkp_A C-MYC, MYC proto-oncoge 27.6 1.4E+02 0.0046 22.3 5.8 41 194-234 45-85 (88)
170 1t2k_D Cyclic-AMP-dependent tr 27.5 1.5E+02 0.0052 20.4 8.9 53 193-245 4-59 (61)
171 3nmd_A CGMP dependent protein 27.1 1.9E+02 0.0064 21.5 6.3 15 213-227 52-66 (72)
172 1deb_A APC protein, adenomatou 27.1 1.7E+02 0.0057 20.7 6.7 41 210-250 12-52 (54)
173 1eto_A FIS, factor for inversi 27.1 31 0.0011 26.3 2.1 26 59-84 57-82 (98)
174 2qho_B E3 ubiquitin-protein li 27.0 1.5E+02 0.0052 20.9 5.4 38 47-84 10-47 (53)
175 3v6i_A V-type ATP synthase sub 27.0 2.5E+02 0.0087 22.8 9.9 16 222-237 81-96 (187)
176 2oto_A M protein; helical coil 26.7 2.5E+02 0.0085 22.5 9.5 60 172-238 45-113 (155)
177 2jn6_A Protein CGL2762, transp 26.6 1.7 5.7E-05 31.9 -5.0 29 175-203 64-92 (97)
178 1nlw_A MAD protein, MAX dimeri 26.5 96 0.0033 22.9 4.7 29 170-198 47-75 (80)
179 3na7_A HP0958; flagellar bioge 26.5 3.1E+02 0.011 23.6 11.8 12 144-155 68-79 (256)
180 2juj_A E3 ubiquitin-protein li 26.5 55 0.0019 23.5 3.1 40 47-88 8-47 (56)
181 2l5g_B Putative uncharacterize 26.4 1.5E+02 0.0052 20.0 5.3 29 209-237 10-38 (42)
182 2ve7_A Kinetochore protein HEC 26.0 92 0.0031 28.2 5.4 52 142-198 162-213 (315)
183 3jsv_C NF-kappa-B essential mo 25.8 2.4E+02 0.0081 22.0 8.7 30 173-202 19-51 (94)
184 2oxj_A Hybrid alpha/beta pepti 25.7 1.3E+02 0.0045 19.5 4.6 15 182-196 6-20 (34)
185 1olm_A SEC14-like protein 2; l 25.4 59 0.002 29.5 4.0 30 57-86 30-59 (403)
186 3vem_A Helicase protein MOM1; 25.3 2.7E+02 0.0092 22.5 8.0 48 182-235 37-85 (115)
187 1r5l_A Alpha-TTP, protein (alp 25.2 66 0.0022 26.9 4.0 28 59-86 30-57 (262)
188 3mq7_A Bone marrow stromal ant 25.0 2.8E+02 0.0095 22.6 10.8 40 210-249 73-112 (121)
189 2j5u_A MREC protein; bacterial 25.0 44 0.0015 29.4 3.0 16 176-191 25-40 (255)
190 3nr7_A DNA-binding protein H-N 24.9 2.2E+02 0.0077 21.4 6.9 39 196-234 33-71 (86)
191 3nmd_A CGMP dependent protein 24.8 2.2E+02 0.0074 21.2 6.8 29 217-245 35-63 (72)
192 3cqx_C BAG family molecular ch 24.8 1.1E+02 0.0036 23.8 4.7 54 130-191 10-78 (88)
193 2fxo_A Myosin heavy chain, car 24.6 2.5E+02 0.0087 22.0 8.7 53 183-235 68-124 (129)
194 2w6a_A ARF GTPase-activating p 24.6 2.1E+02 0.007 20.9 7.2 44 196-242 18-61 (63)
195 1hlo_A Protein (transcription 24.5 86 0.003 22.7 4.1 8 194-201 50-57 (80)
196 3q8g_A CRAL-TRIO domain-contai 24.1 95 0.0032 27.7 5.1 39 47-85 40-84 (320)
197 1a92_A Delta antigen; leucine 24.0 1.9E+02 0.0064 20.2 5.6 43 157-202 4-46 (50)
198 2wvr_A Geminin; DNA replicatio 23.9 2.3E+02 0.008 25.0 7.3 29 172-200 117-145 (209)
199 1i84_S Smooth muscle myosin he 22.5 3.9E+02 0.013 28.2 10.0 20 220-239 925-944 (1184)
200 2j69_A Bacterial dynamin-like 22.5 2.9E+02 0.0099 27.3 8.6 52 144-200 331-382 (695)
201 3c3f_A Alpha/beta peptide with 22.4 1.7E+02 0.0057 19.0 4.6 10 185-194 9-18 (34)
202 4a5u_A RNA replicase polyprote 22.1 39 0.0013 28.8 2.0 74 11-86 28-117 (160)
203 3o0z_A RHO-associated protein 21.9 3.7E+02 0.013 22.8 11.1 27 220-246 88-114 (168)
204 3d2f_A Heat shock protein homo 21.5 3.9E+02 0.013 26.4 9.3 39 196-234 613-651 (675)
205 1ytz_I Troponin I; muscle, THI 21.4 83 0.0029 27.2 3.9 31 218-248 58-88 (182)
206 2ve8_A FTSK, DNA translocase F 21.1 48 0.0017 24.7 2.1 34 129-162 13-51 (73)
207 3mq7_A Bone marrow stromal ant 21.1 3.4E+02 0.012 22.1 7.8 13 175-187 76-88 (121)
208 4dzo_A Mitotic spindle assembl 20.8 2.5E+02 0.0085 22.3 6.4 27 176-202 3-29 (123)
209 2bni_A General control protein 20.8 1.6E+02 0.0056 19.1 4.2 11 184-194 8-18 (34)
210 1g2h_A Transcriptional regulat 20.5 24 0.00084 24.2 0.3 26 57-83 18-43 (61)
211 3fpp_A Macrolide-specific effl 20.4 72 0.0025 27.8 3.4 29 208-236 114-142 (341)
212 1lwu_C Fibrinogen gamma chain; 20.4 3E+02 0.01 25.4 7.7 15 215-229 40-54 (323)
No 1
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=5.4e-10 Score=83.31 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=41.5
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcccc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRS 90 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~~ 90 (263)
+..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 67799999999999999999999999999999999999998755
No 2
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=99.00 E-value=3.5e-10 Score=82.22 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=42.4
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhccccc
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRSD 91 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~~a 91 (263)
.+.-+.+|+.+||+||+++|+.+|++|++|+|.||+.|.++...+.
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 3677999999999999999999999999999999999999887654
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.91 E-value=2.7e-06 Score=61.18 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=30.8
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
...+..|+.+||+||+++|+.+|+.++.++|+||.+|.++
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 3458899999999999999999999999999999998775
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.66 E-value=4.6e-05 Score=53.61 Aligned_cols=40 Identities=35% Similarity=0.348 Sum_probs=36.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
++=+..|..+||..+...+..+|+.||.|+|.||..|.+.
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3457899999999999999999999999999999998874
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.31 E-value=0.0057 Score=46.05 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=37.0
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.+.+.+++.|||++....+++.|+.+|+|++.+|-.|.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 566899999999999999999999999999999999987
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.87 E-value=0.12 Score=39.66 Aligned_cols=69 Identities=26% Similarity=0.285 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 154 RVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 154 RvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
-+|+-+|.=|-. +-+.+.-++.|+..||++-..|..||.-++.- .+...+|.++||+-...+|++|+.
T Consensus 6 ElleqLE~KIq~--avdtI~lLqmEieELKekN~~L~~e~~e~~~~----------~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 6 EVFEKLEAKVQQ--AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ----------REELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666654 33456778999999999999999988876542 244678899999999999999998
Q ss_pred H
Q 024726 234 L 234 (263)
Q Consensus 234 L 234 (263)
|
T Consensus 74 L 74 (81)
T 2jee_A 74 L 74 (81)
T ss_dssp H
T ss_pred H
Confidence 7
No 7
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.21 E-value=0.047 Score=41.10 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=33.3
Q ss_pred cchHHHHHHhhCCCC-CHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 46 APQLLDRLRAFFPQL-EPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 46 ~~~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 85 (263)
-+.-|.+|..+ ++ |.+...+||..+++|++.||..|..
T Consensus 29 ye~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 29 YQQELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp SHHHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35678999998 54 7898999999999999999999987
No 8
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.17 E-value=0.074 Score=39.84 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=35.1
Q ss_pred CcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 45 TAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 45 ~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
..+..|.+|..+ +.+...+.+||..|++|++.|+..|..
T Consensus 28 ~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 447789999998 789999999999999999999998876
No 9
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.04 E-value=0.039 Score=35.36 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.8
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHH
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKL 83 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 83 (263)
+..|.+|..+ +.++....+||..|++|++.||..|
T Consensus 5 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5678999998 8999999999999999999999876
No 10
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.67 E-value=0.082 Score=36.73 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=33.1
Q ss_pred chHHHHHHhhCCCC-CHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQL-EPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|.+|..+ +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5678999998 78 9999999999999999999998854
No 11
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.94 E-value=0.074 Score=35.05 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=32.1
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5668888887 678899999999999999999988754
No 12
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.79 E-value=0.72 Score=37.19 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHE-RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQhe-R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
-+..|+...++|..|.--+|.=+.-++. -.+..-..+.|+.+|+..-..|+.+||.||+.|--|----+-
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3556777777888887777776655432 223344568899999999999999999999999988654443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.37 E-value=0.89 Score=39.63 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHER-QKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR-~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
..+-+..|+.++..|..|..-+|.=+..++.- .+.....+.|+.+|+....+++.+||.||+.|--|---.|.+
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455666666777777766666555444322 234455688999999999999999999999999886555443
No 14
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=93.34 E-value=0.078 Score=36.91 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.8
Q ss_pred hHHHHHHhhCCCC-CHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 48 QLLDRLRAFFPQL-EPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 48 ~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 85 (263)
..|.+|..+ +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 347888887 67 8999999999999999999999876
No 15
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.84 E-value=0.087 Score=39.98 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=36.1
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
--+++.|+..||.+...||...+-+.++++|+.|..|.+
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 346899999999999999999999999999999999976
No 16
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.61 E-value=0.45 Score=34.31 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=33.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcc-cHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNA-DLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 85 (263)
+..|.+|..+ ++++....+||..||| |++.|+.-|.+
T Consensus 20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5679999998 7888999999999998 99999999976
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.95 E-value=0.38 Score=33.74 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=32.7
Q ss_pred chHHHHHHhhCCCC-CHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQL-EPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~L 86 (263)
+.-|.+|..+ +. |.+...+||..|++|++.||..|...
T Consensus 10 ~~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5568999998 56 67778999999999999999999874
No 18
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.63 E-value=0.34 Score=35.00 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=37.0
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
++.+++++.+||+++...+..=|+..| +++..|..+.+=+|
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 567899999999999999999999998 99999999877554
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.52 E-value=0.21 Score=34.19 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=32.9
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|.+|..+ +.++....+||..|+||++.|+.-|.+
T Consensus 9 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5568888888 789999999999999999999998865
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.24 E-value=0.34 Score=32.92 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=30.8
Q ss_pred chHHHHHHhhCCCC-CHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQL-EPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+.-|.+|..+ +. |.+...+||..|++|++.||..|..
T Consensus 8 ~~~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4457888887 44 7888899999999999999998853
No 21
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.88 E-value=0.37 Score=34.79 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=33.7
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|.+|..+ +++.....+||..|++|++.|+.-|.+
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6678999988 789999999999999999999999877
No 22
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.81 E-value=0.45 Score=38.03 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=32.0
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.-|..|..+ .++++.-...||++|++||..||..|.+
T Consensus 41 ekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 41 EKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 346777777 6788999999999999999999999986
No 23
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=89.49 E-value=0.58 Score=33.41 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.5
Q ss_pred chHHHHHHhhCCCC-CHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQL-EPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+.-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 18 ~~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457889988 44 7888899999999999999999865
No 24
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.20 E-value=0.73 Score=32.78 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=33.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|.+|..+ +.+.....+||..|+||++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6778999998 667899999999999999999999987
No 25
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.92 E-value=0.57 Score=34.22 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=37.9
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
-.+.+++++.+||++....+..=|+..| +++..|..+.+=++
T Consensus 13 l~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 13 LATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 3667999999999999999999999998 99999999887665
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.68 E-value=4.8 Score=33.01 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024726 129 AEWVELFVKEMTSA---TSMDDARARASRVLEILEKSIMAR-ASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQH 204 (263)
Q Consensus 129 ~eWVEl~V~EM~~A---sd~dDAraRAsRvLEafEksi~~r-a~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQh 204 (263)
+..|+-=++||... ..+++-| .+|.+. .-++.--.+++++..|..+++.+.+|..-||-=+.--.
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r-----------~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAEL-----------RTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777654 3333332 334332 23444556777888899999998888888886443332
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 205 ERQKDYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 205 eR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
-.++...+|+..|+.-+...|+++..||..+
T Consensus 103 ---~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 ---IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455557778888888888888888887543
No 27
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.32 E-value=0.86 Score=34.92 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=35.4
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.+..|.+|..+ ++++..+.+||..|++|++-|+.-|..
T Consensus 29 ~ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47789999999 789999999999999999999999987
No 28
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=88.15 E-value=0.87 Score=33.00 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=33.2
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
++.+++++.+||+++...+..-|+.. +++++.|..+.+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 35689999999999999999999998 589999988754
No 29
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.68 E-value=1.9 Score=31.89 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=34.7
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcc-cHHHHHHHHhhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNA-DLDSTIKKLNEL 86 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 86 (263)
.+..|.+|..+ +++.....+||..||| |++.|+.-|.+.
T Consensus 9 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 9 DESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp CHHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 36789999998 7788999999999997 899999999884
No 30
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=87.60 E-value=0.34 Score=35.57 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=31.0
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
...|..||... +..-.--.+||++|++||+.||.-|..-
T Consensus 10 ~~~Vk~LRe~T-Gag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 10 KELLMKLRRKT-GYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CHHHHHHHHHH-CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46688888873 3444457799999999999999999864
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.53 E-value=14 Score=34.97 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
+.+.++...+++..+.+.+++..+++++.- .+++|+...+|+..+++.+..-++++..|.+.|-.++--+++-.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADA---KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhh---hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777633 346666667888888889999999999999998888777776553
No 32
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.34 E-value=1.4 Score=31.54 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=33.9
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHh-cccHHHHHHHHhhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEEC-NADLDSTIKKLNEL 86 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~c-gndlDaAIksL~~L 86 (263)
.+..|.+|..+ +++.....+||..| ++|++.|+.-|.+.
T Consensus 9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 36779999998 67789999999999 48999999999873
No 33
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=86.04 E-value=1.5 Score=32.39 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=34.2
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.+..|.+|..+ +.+.....+||..||||++.|+.-|.+
T Consensus 29 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 29 DQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36779999998 678999999999999999999999876
No 34
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=85.96 E-value=0.34 Score=32.98 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=31.9
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
...|.+|..+ +.++..+.+||.+||+|.+.|..-|-.
T Consensus 5 ~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5567888888 889999999999999999999988754
No 35
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.61 E-value=2 Score=32.52 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=35.3
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
.+..|.+|..+ +++.....+||..|++|++.|+.-|.+.
T Consensus 29 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 29 DEAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 47789999998 7888999999999999999999999873
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.33 E-value=2.1 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=30.8
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|.+|..+ +.++....+||..|| |++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 6778999988 566788999999997 99999998864
No 37
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.72 E-value=1.6 Score=33.22 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=35.5
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhccc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSR 89 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 89 (263)
+..|.+|..+ +++++..++||..|++|++.|+.-|.+...+
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 5668899998 7788999999999999999999999885443
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=83.41 E-value=3.7 Score=28.04 Aligned_cols=36 Identities=36% Similarity=0.447 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
.++|.+..+++. ..++..++|.||+..|+-|+--|+
T Consensus 6 ~eLE~r~k~le~---~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLEN---KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 455556555444 788889999999999999987765
No 39
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=81.17 E-value=17 Score=34.88 Aligned_cols=97 Identities=11% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhh------HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 157 EILEKSIMARAS------DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 157 EafEksi~~ra~------ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEq 230 (263)
|.+.+++..|-. -+..-.+-++...++.+++.|..+.+.+-+.+..--....+.+..-.|+.+||.-+...+++
T Consensus 12 ~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 12 ELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555532 23344455667777777777777777777666542111122333344445555444444444
Q ss_pred HHHHHhhhHHHHHHHHHhhcCCCCCCCCCCCC
Q 024726 231 LRTLEINNYALSMHLKQAQQSSSIPGRFHPDV 262 (263)
Q Consensus 231 ir~LE~~NYaL~~HL~qA~~~~s~~g~~~PDV 262 (263)
++.+| --|.... ..+|-..||||
T Consensus 92 ~~~~~-------~~~~~~~--~~ipN~~~~~v 114 (455)
T 2dq0_A 92 VEELK-------KKIDYYL--WRLPNITHPSV 114 (455)
T ss_dssp HHHHH-------HHHHHHH--TTSCCCCCTTS
T ss_pred HHHHH-------HHHHHHH--HhCCCCCCccC
Confidence 44444 4443322 23555566655
No 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=81.07 E-value=9.5 Score=36.07 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhh---HHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 157 EILEKSIMARAS---DEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 157 EafEksi~~ra~---ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~ 233 (263)
+.+.+++..|-. -+..-.+-++...++.+++.|..+.+.+-+.+.. +.+ .+.+.|+.-+.+..++|+.
T Consensus 12 ~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~------~~~~~l~~~~~~~~~~~~~ 82 (421)
T 1ses_A 12 EVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK---APP------EEKEALIARGKALGEEAKR 82 (421)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcc------ccHHHHHHHHHHHHHHHHH
Confidence 455555655532 3455556677888888888888888888877764 211 1233344445555556666
Q ss_pred HHhhhHHHHHHHHHhhcCCCCCCCCCCCC
Q 024726 234 LEINNYALSMHLKQAQQSSSIPGRFHPDV 262 (263)
Q Consensus 234 LE~~NYaL~~HL~qA~~~~s~~g~~~PDV 262 (263)
||..-+.+.--|.... ..+|-..||||
T Consensus 83 ~~~~~~~~~~~~~~~~--~~ipN~~~~~v 109 (421)
T 1ses_A 83 LEEALREKEARLEALL--LQVPLPPWPGA 109 (421)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHH--HhCCCCCCCCC
Confidence 6666555555554432 23555566665
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.85 E-value=30 Score=36.71 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=34.5
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQK-DYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
...++++|+..|+++++.+.+|+..|+....--.++++ .......|++.|+|-+++...++.+.+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888777665322211111 111223444444444444444444443
No 42
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.49 E-value=2.4 Score=30.49 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=34.0
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcc-cHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNA-DLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 86 (263)
+..|.+|..+ +++.....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5668999997 7888999999999998 999999999874
No 43
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.02 E-value=1.6 Score=32.19 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHhh-CCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 49 LLDRLRAF-FPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 49 ~~~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
-|.+|+.+ | .|.+...+||.+|++|++.||..|...
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 47777776 3 578888999999999999999999883
No 44
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.49 E-value=25 Score=34.30 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYA 240 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYa 240 (263)
+-++-..++.+++.|..+.+.+-+.++.--....+.+...+|+.+||.-+...+++++.+|..-+.
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555444444443211111234445566666766666666666666655443
No 45
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=78.32 E-value=3.5 Score=32.59 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=34.4
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.+..|.+|..+ +.+.....+||..||||++.|+.-|..
T Consensus 78 ~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 78 PEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47789999998 778999999999999999999999976
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.29 E-value=5.2 Score=30.75 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 180 ATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQ 230 (263)
Q Consensus 180 ~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEq 230 (263)
..++...+.|..||..|+.=|. ....|++.|++++.|..++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~----------~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCcHH
Confidence 3344555666666666654333 2345666666666665544
No 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.52 E-value=3.8 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024726 176 QKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVS 225 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~ 225 (263)
..+...|..+++.|..+|.-|+.=+ +....|++.||+++.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i----------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERA----------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 3455666666677777776666433 223556666666654
No 48
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=77.47 E-value=3.9 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
.++|.|..-++-|=++||.||..|-.|...+.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999999999999999876654
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.45 E-value=14 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=21.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
.+.+.++|..|+.++..|..|+..||.-+
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778888888888888887777654
No 50
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.80 E-value=49 Score=32.22 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQ--------KDYENRNREVEYQKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~--------~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NY 239 (263)
.-.+-++...++.+++.|..+.+.+-+.++.--... .+.+...+|+.+||.-+...+++++.+|..-+
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666555555554311000 12333344555555555555555555554433
No 51
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.48 E-value=7 Score=29.86 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=38.7
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
...+|.+|+.|----|+++|..||.++..||..|+--|.+=+.
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~ 66 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNA 66 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 4568999999999999999999999999999999999988433
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.16 E-value=5.6 Score=30.58 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~ 201 (263)
+..|.+||..|+.+++.|..|...||..|.
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455899999999999999999999998765
No 53
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=74.28 E-value=8.7 Score=29.29 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 206 RQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 206 R~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
|.+.+.+.-.|..+|.+-|.+.++.|.+|+..|-.|.--+.+++
T Consensus 25 RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 25 RRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666767777777777777777766665555543
No 54
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=73.51 E-value=38 Score=28.11 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024726 149 RARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQ 228 (263)
Q Consensus 149 raRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyq 228 (263)
|..+.++++.||.++.- +...|..|..+++.=..=...|..+...|.+. +.+.+..+..|+
T Consensus 67 k~~~e~l~~~veeA~~~---------L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~----------l~e~e~~leeyK 127 (152)
T 4fla_A 67 KEAAERLSKTVDEACLL---------LAEYNGRLAAELEDRRQLARMLVEYTQNQKDV----------LSEKEKKLEEYK 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 66677777777776554 33444444444433333334444444444222 333333444455
Q ss_pred HHHHHHHhhhHHHHHHH
Q 024726 229 EQLRTLEINNYALSMHL 245 (263)
Q Consensus 229 Eqir~LE~~NYaL~~HL 245 (263)
+.+.++..-.=-|.-|+
T Consensus 128 ~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 128 QKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444333344443
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.43 E-value=31 Score=32.46 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQK 208 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~ 208 (263)
++++....+++++.+.+|+.-|++-+..+-++..
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 3334444455555555555555555555544433
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.32 E-value=9.6 Score=28.00 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 223 MVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 223 lv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
-+..+++++..|+..|..|...|+
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555544443
No 57
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=68.29 E-value=4.6 Score=32.21 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=31.3
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+.-|.+|+.+= -.|.+...+||..|+.|++.||..|..
T Consensus 67 ~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 55678888761 136788999999999999999999976
No 58
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=67.68 E-value=28 Score=24.97 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~ 201 (263)
||-|+..|.+||.-||+++-
T Consensus 15 LkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777764
No 59
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=67.58 E-value=8.6 Score=24.90 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=31.2
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
..+|.++..+ -+.++..-..+|+.|+.||+.||..+.+
T Consensus 6 ~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 6 QDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456777765 5679999999999999999999987754
No 60
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.78 E-value=6.7 Score=29.52 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
|.+||..|+.+++.|..|...||
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.59 E-value=11 Score=27.76 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
+..||..|+.++..|..||..||
T Consensus 48 l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566666666666666665554
No 62
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=65.81 E-value=13 Score=27.97 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=34.2
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhc-ccHHHHHHHHhhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECN-ADLDSTIKKLNEL 86 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cg-ndlDaAIksL~~L 86 (263)
.+..|.+|..+ +++.....+||..++ +|++.|+.-|.+.
T Consensus 29 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 37789999998 788899999999997 4999999999873
No 63
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=64.98 E-value=5.7 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 49 LLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 49 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.|..|..+ +.+...+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666665 578899999999999999999998754
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.75 E-value=8.5 Score=26.90 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=22.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 171 AAQSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 171 ~~~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
....++.||..||.+++.|..++.-||+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999998888888888887776
No 65
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.09 E-value=9.1 Score=25.03 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024726 214 NREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE 235 (263)
++++.+||.--...++|||+||
T Consensus 13 qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 4555555555566666777665
No 66
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.95 E-value=40 Score=35.74 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHhc
Q 024726 60 LEPQLLERALEECN 73 (263)
Q Consensus 60 md~q~le~aLe~cg 73 (263)
+|..+|-.=|.-||
T Consensus 673 fd~~~V~~QLr~~G 686 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG 686 (1080)
T ss_dssp CCHHHHHHHHHTTT
T ss_pred cCHHhhHHHHhhcc
Confidence 46666666666665
No 67
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=62.94 E-value=9.4 Score=36.10 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYA 240 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYa 240 (263)
+-++...++.+++.|..+.+.+-+.++.--....+.+....|+..||.-+....++++.+|..-+.
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666555555544210001122233355556666555566666655554443
No 68
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.33 E-value=49 Score=33.08 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
.+.++.|+..|..--.+|++||+..
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777654
No 69
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=61.75 E-value=28 Score=24.69 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024726 181 TLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQ 228 (263)
Q Consensus 181 ~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyq 228 (263)
.|-.|++.|.+||.-|+|-+.---.....+ ..|...+|.++-+.|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskL---E~ets~mKevlk~lq 51 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKL---ETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHH---HhhhhhHHHHHHHHc
Confidence 355678888888888877554322222222 334444555544443
No 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.61 E-value=63 Score=34.16 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHhc
Q 024726 60 LEPQLLERALEECN 73 (263)
Q Consensus 60 md~q~le~aLe~cg 73 (263)
+|..+|-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 44445545454444
No 71
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.46 E-value=7.3 Score=28.64 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=30.0
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|+.|-.+ +..++...+||.+|||||+.|..-|-.
T Consensus 20 ~e~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 20 RQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4456666665 467888999999999999999998876
No 72
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=60.26 E-value=34 Score=26.25 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 024726 177 KENATLKEQIETVIRENSILK 197 (263)
Q Consensus 177 ~E~~~lk~ql~~l~~eN~iLK 197 (263)
+||+.|.++++.+..|+..||
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 73
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=60.20 E-value=4.8 Score=35.22 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.7
Q ss_pred HHHHHHHhcccHHHHHHHHhhhcccc
Q 024726 65 LERALEECNADLDSTIKKLNELCSRS 90 (263)
Q Consensus 65 le~aLe~cgndlDaAIksL~~L~L~~ 90 (263)
-.+||++|++|+|.||.-|..--+..
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~ak 46 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMK 46 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCch
Confidence 46999999999999999998854433
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=60.04 E-value=11 Score=28.81 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 216 EVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 216 E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
+++.|.--++-|=++||.||+.|-.|...+++-+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777888999999999999999988776654
No 75
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=59.47 E-value=12 Score=28.14 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQ 226 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~q 226 (263)
-...++.....|..||..|+.=|. ....|+..||+++.|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~----------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 345566788888899988886554 236777777776654
No 76
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.74 E-value=73 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 024726 222 HMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 222 qlv~qyqEqir~LE~~NY 239 (263)
.-..+|++|++.|...|-
T Consensus 90 ~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 346677888888776653
No 77
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=57.58 E-value=71 Score=25.43 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024726 217 VEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~ 236 (263)
+..+..-+..+++++..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ 97 (284)
T 1c1g_A 78 ATDAEADVASLNRRIQLFEE 97 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433
No 78
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=56.70 E-value=5.7 Score=36.40 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.5
Q ss_pred HHHHHHHhcccHHHHHHHHhh
Q 024726 65 LERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 65 le~aLe~cgndlDaAIksL~~ 85 (263)
-.+||++|++|+|.||+-|..
T Consensus 22 CKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 22 CKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 569999999999999999986
No 79
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=56.66 E-value=13 Score=26.32 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 58 PQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 58 P~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
=+|-.+-=++.|+++|=|++.|++.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999999864
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=56.66 E-value=35 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
+.+++--.|..+|...+.+-++.|.+|...|--|
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444433
No 81
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.81 E-value=92 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
..+..+.|+..|+--+...+++++.|+.-|
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555666666777777755
No 82
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.81 E-value=1.4e+02 Score=29.41 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 150 ARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQE 229 (263)
Q Consensus 150 aRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqE 229 (263)
..=+.+-+++|+.+.+ .+.+|+.++...+++.+.|.-.|-...-- +..| +++|...++-++.|+.
T Consensus 23 kana~aka~Ye~~~ae---------~~a~n~~i~aeNeaikkrNa~aka~Ye~~---l~kY---~~dlakY~~~~AeY~~ 87 (497)
T 3iox_A 23 KANADAKAAYEAAVAA---------NNAANAALTAENTAIKKRNADAKADYEAK---LAKY---QADLAKYQKDLADYPV 87 (497)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHH
Confidence 3334455666666655 34445555555555555565555443221 1122 3444444445555555
Q ss_pred HHHHHH
Q 024726 230 QLRTLE 235 (263)
Q Consensus 230 qir~LE 235 (263)
++.+-|
T Consensus 88 kl~aYe 93 (497)
T 3iox_A 88 KLKAYE 93 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 83
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=55.63 E-value=7.6 Score=34.35 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024726 191 RENSILKRAVAIQHERQKDYENRNREVEYQKHMV 224 (263)
Q Consensus 191 ~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv 224 (263)
+||.-||+=++....++.+++...+|+++||+++
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344443333333334444444556666666653
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.15 E-value=71 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.037 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 213 RNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
.+.|...+++....+|+++..|+..|-.|..-++..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 445555667889999999999999998888776653
No 85
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=55.10 E-value=66 Score=25.18 Aligned_cols=75 Identities=24% Similarity=0.269 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhHHHHHhcHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 156 LEILEKSIMARASDEAAQSFQKENATLK---EQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLR 232 (263)
Q Consensus 156 LEafEksi~~ra~ae~~~~~~~E~~~lk---~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir 232 (263)
|..-|+++.. .-..+++++.+..-++ +++..|..+..|.|.=|. -|| .+-|..+ +-..++++|++
T Consensus 11 L~~aEeaL~~--kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~--aER-adREkl~-------~eKe~L~~ql~ 78 (94)
T 3jsv_C 11 LQQAEEALVA--KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ--AER-HAREKLV-------EKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHH-------HTTSHHHHHHH
T ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHH-------hHHHHHHHHHH
Confidence 3444555544 2333455666555554 555555566666655443 233 2222223 33556677777
Q ss_pred HHHhhhHHHH
Q 024726 233 TLEINNYALS 242 (263)
Q Consensus 233 ~LE~~NYaL~ 242 (263)
.|...|-.|.
T Consensus 79 ~lq~q~~~L~ 88 (94)
T 3jsv_C 79 QLQREFNKLK 88 (94)
T ss_dssp HHHHTTC---
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 86
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.96 E-value=29 Score=26.68 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
|++++..|++.+..+..+|.-||
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 87
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=54.87 E-value=48 Score=27.80 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=21.5
Q ss_pred CCChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 024726 125 PQNGAEWVELFVKEMTSATSMDDARARASRVLEILEK 161 (263)
Q Consensus 125 p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEk 161 (263)
+.||..|++.|++| + +.=|.||+++=|-
T Consensus 50 l~DGd~fL~~Lmre-----~----~~LAlRIMeVR~~ 77 (147)
T 2py8_A 50 IQNGETFLTELLDE-----N----KELVLRILAVRED 77 (147)
T ss_dssp CSSHHHHHHHHHTT-----C----HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhh-----C----HHHHHHHHHHHHH
Confidence 57999999999998 2 3458888876443
No 88
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=54.84 E-value=6.8 Score=29.80 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
++.-+..|-+++..|..||.+||.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555553
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.67 E-value=21 Score=24.86 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMV 224 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv 224 (263)
....|..+++.|..+|.-|+.=|. ....|+.+||+++
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~----------~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVT----------LLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHh
Confidence 455566666666666666654332 2345566666554
No 90
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.37 E-value=21 Score=25.11 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=32.7
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.++|.++..+ -+.++..-..+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5667887776 5788999999999999999999988765
No 91
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=54.01 E-value=82 Score=25.06 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 214 NREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 214 ~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
..++..++.-+..+...+..++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ 105 (284)
T 1c1g_A 82 EADVASLNRRIQLFEEELDRAQER 105 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555554443
No 92
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=53.41 E-value=37 Score=30.04 Aligned_cols=26 Identities=35% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
-..-=+||+.|.++++.+..|+..||
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344466666666666666655555
No 93
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.94 E-value=43 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=33.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
++-+.+|-.+ +.|++-+.+||..++||+|.|.--|.+.-
T Consensus 10 e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 10 SSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4558888887 78999999999999999999998888743
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.35 E-value=64 Score=25.39 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKRAVA 201 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKRAv~ 201 (263)
+...|++.++.|-+||.=|++=+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554433
No 95
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=52.25 E-value=18 Score=25.59 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.2
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
++-|++|-.+ +.|.+-+.+||..++||+|-|.--|.+..+
T Consensus 12 ~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 12 DAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 4568888877 789999999999999999999998887643
No 96
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.24 E-value=46 Score=29.04 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHHH--hhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 024726 159 LEKSIMAR--ASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHER 206 (263)
Q Consensus 159 fEksi~~r--a~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR 206 (263)
|-++|-++ .+.-.+++++.||.+|.++++....|+.-||+=++-..+.
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444443 3333456677788888888876666666665544444333
No 97
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.23 E-value=24 Score=24.88 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024726 177 KENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVS 225 (263)
Q Consensus 177 ~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~ 225 (263)
.....|..+.+.|..+|.-|+.-+ .....|+++|++++.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 356667777777788887777543 233566777776653
No 98
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.59 E-value=12 Score=26.47 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=30.5
Q ss_pred HHHHHHhh-CCCCCHHHHHHHHHHhcccHHHHHHHHhhhc
Q 024726 49 LLDRLRAF-FPQLEPQLLERALEECNADLDSTIKKLNELC 87 (263)
Q Consensus 49 ~~~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L~ 87 (263)
.+.+|+.+ | .|.+.-.++|..+|.||+.||..|..+.
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 46677766 3 3888999999999999999999998753
No 99
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=50.50 E-value=15 Score=29.28 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=32.8
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 46 APQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 46 ~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
...+|.+|..+ +.+...+.+||.+||||.+.|+.-|...
T Consensus 8 e~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 8 ERQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 35667888776 5567889999999999999999999875
No 100
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=50.03 E-value=12 Score=29.31 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHH
Q 024726 50 LDRLRAFFPQLEPQLLERALEECNADLDSTIKKL 83 (263)
Q Consensus 50 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 83 (263)
++-+..- .+.+..-..+||++|++||=.||..|
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5555555 36777788999999999999999876
No 101
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=49.50 E-value=14 Score=28.16 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
.|+.-||.-|.+..+++..||..|.-|+-+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566788888888999999999999888774
No 102
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=49.44 E-value=47 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhh
Q 024726 223 MVSQYQEQLRTLEIN 237 (263)
Q Consensus 223 lv~qyqEqir~LE~~ 237 (263)
+-.+|+|.|.+|...
T Consensus 69 mKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 69 MKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456888888887654
No 103
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=49.12 E-value=23 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=29.2
Q ss_pred CcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHH
Q 024726 45 TAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKK 82 (263)
Q Consensus 45 ~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIks 82 (263)
..+.+|+++..+==--|+..-..+||.++-||+.|+-+
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34667777777654444588999999999999999854
No 104
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.78 E-value=69 Score=27.93 Aligned_cols=46 Identities=11% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 186 IETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 186 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
+..|..||..|..-+. .|.+|.+..+.+++.||.-+..++.++...
T Consensus 22 V~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 22 VANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 4578888888876665 344455555566666666666666666543
No 105
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=48.72 E-value=2e+02 Score=27.96 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCCCC
Q 024726 224 VSQYQEQLRTLEINNYALSMHLKQAQQSSSIPGRFHPDV 262 (263)
Q Consensus 224 v~qyqEqir~LE~~NYaL~~HL~qA~~~~s~~g~~~PDV 262 (263)
+.+..++|+.||..-..+.--+.... ..+|-..||||
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l--~~iPN~~~~~v 149 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM--LNVGNILHESV 149 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCCccC
Confidence 44555555555555555554454322 23455556654
No 106
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.60 E-value=25 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=34.6
Q ss_pred CcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 45 TAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 45 ~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
....+|.++..+=---|+..-..+|+.++-||+.||-.+.+
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34567888888765478999999999999999999998876
No 107
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=54.11 E-value=3.7 Score=33.94 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=38.4
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcccc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCSRS 90 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~~ 90 (263)
..+|-+|+.|==-=|+++|..||.+|..||--|+--|++=+...
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 45789999998888999999999999999999999998855533
No 108
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=48.12 E-value=55 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 223 MVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 223 lv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
-...+++++..|+..|-.|..-|++
T Consensus 60 ~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 60 EEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555444443
No 109
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.97 E-value=88 Score=23.70 Aligned_cols=53 Identities=30% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHH---HHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 184 EQIETVIRENSIL---KRAVAIQH--------ERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 184 ~ql~~l~~eN~iL---KRAv~IQh--------eR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+++.|++||.=| |.|+.|.- +-..|++..+.|+..+++.....+++|+.||.
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 45555542 23345666778888888888888888888875
No 110
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=47.57 E-value=5.6 Score=27.46 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 59 QLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 59 ~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
.++.++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45789999999999999998888763
No 111
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.19 E-value=98 Score=26.79 Aligned_cols=51 Identities=6% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQKDYE----NRNREVEYQKHMVSQYQEQLR 232 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~q~Lkqlv~qyqEqir 232 (263)
|...+..+..+-.-|+..+..-.....+.+ ....++..+++.+..|++++.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333332 334556666666777776664
No 112
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=47.18 E-value=24 Score=27.71 Aligned_cols=38 Identities=5% Similarity=-0.032 Sum_probs=30.8
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcc-cHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNA-DLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 86 (263)
+..|.+|..+ +.+....++||..||| |++.|+.-|...
T Consensus 4 ~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 4 ESSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp THHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4567777765 4556889999999988 999999999873
No 113
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.09 E-value=43 Score=21.30 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
+++|...||..+.+|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555555543
No 114
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.80 E-value=72 Score=23.37 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 192 ENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 192 eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
+|..=-|||. +|...| +..|.+-|.+++.....|...|+.|+-.+.
T Consensus 15 qNR~AQRafR---eRK~~~------i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 15 QNRAAQRAFR---KRKEDH------LKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHH---HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHH---HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556665 344433 334444455555555555555555554443
No 115
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.48 E-value=26 Score=25.16 Aligned_cols=37 Identities=3% Similarity=0.156 Sum_probs=32.0
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.++.++..+ -+-++.+-..+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567777766 6789999999999999999999998865
No 116
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.82 E-value=54 Score=24.22 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=4.9
Q ss_pred HHHHHHHH
Q 024726 194 SILKRAVA 201 (263)
Q Consensus 194 ~iLKRAv~ 201 (263)
.||++|..
T Consensus 40 ~iL~kA~~ 47 (80)
T 1nlw_A 40 SLLTKAKL 47 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.70 E-value=2.1e+02 Score=28.67 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=65.5
Q ss_pred HHHHHHHhcccHHHHHHHHhhhcccccccccccccccCCCccccccccccCCCCCCCCCCCCChhhHHHHHHHHHhcCCC
Q 024726 65 LERALEECNADLDSTIKKLNELCSRSDQERLGFKEELGTNSAAGEETAAASDSSSDPSGFPQNGAEWVELFVKEMTSATS 144 (263)
Q Consensus 65 le~aLe~cgndlDaAIksL~~L~L~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~g~eWVEl~V~EM~~Asd 144 (263)
|...|.+-+-||..-|.-|++..-.- +.+ ..+-..|+..++.++-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdl-sKn------------------------------sKdseqy~k~~~E~Lr---- 95 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEY-QKN------------------------------NKDSHSLTTNIMEILR---- 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH-HHH------------------------------HHHHHHHHHHHHHTTS----
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHH-Hhh------------------------------chhHHHHHHHHHHHHH----
Confidence 77778888899999999998843322 221 1245667766665553
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 024726 145 MDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYE 211 (263)
Q Consensus 145 ~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e 211 (263)
.|....- -.+-.+.+ ..++|.+-+..||+.|..-+...++|+..|.-|+.-++-+|
T Consensus 96 -----~rq~q~~-dNdNtynE-----~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 96 -----GDFSSAN-NRDNTYNR-----VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp -----SHHHHHH-HHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhhh-ccchhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 33333333 22237777788888888888888899999988887777665
No 118
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=44.66 E-value=26 Score=29.59 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.7
Q ss_pred hHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 48 QLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 48 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
..|..|..+ +.|+.-+..||..|+.|++.|+..|-.
T Consensus 165 ekV~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 165 KKIENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345555555 788888999999999999999988753
No 119
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.15 E-value=1.2e+02 Score=24.00 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~I 202 (263)
|.-+++.+...|..|.+.++-
T Consensus 50 L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333444444445555555443
No 120
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=43.89 E-value=1.1e+02 Score=25.11 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 024726 124 FPQNGAEWVELFVKEMTSATSMDDARARASRVLEILE 160 (263)
Q Consensus 124 ~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafE 160 (263)
.+.||..|++.|++| + +.=|.|||++=|
T Consensus 49 ~~~DGe~fl~~L~~E-----~----~~LA~RIM~vR~ 76 (126)
T 3ka1_A 49 SIQDGERYLEALFRE-----Q----PDLGFRILTVRE 76 (126)
T ss_dssp CSSCHHHHHHHHHHH-----C----HHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhh-----C----HHHHHHHHHHHH
Confidence 467999999999999 1 567899997644
No 121
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.67 E-value=28 Score=31.54 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE 235 (263)
++++++-+.+++++|.+|.
T Consensus 77 Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 77 LKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4445555555566665553
No 122
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=43.46 E-value=51 Score=20.99 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~N 238 (263)
.++..|.-+|.+.|+++.+||.+-
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888999999999999764
No 123
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.38 E-value=1.3e+02 Score=24.36 Aligned_cols=70 Identities=7% Similarity=0.076 Sum_probs=31.9
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
=++..|...++++.+.|..+..-+++-+.--.. +....+-++..+++-+..+++++..|+..+=-|.-+|
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~---el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKH---ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444333222211 2222233344444455555555555555555444333
No 124
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.08 E-value=41 Score=22.87 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=21.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 174 SFQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
.++.-|..|.+++-.|.+||..|+..+
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 367777888888888999988887654
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.50 E-value=44 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
.|++...+|++.||+-+...++++..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555554443
No 126
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=42.41 E-value=1.3e+02 Score=24.10 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred cHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 175 FQKENATLKE---QIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 175 ~~~E~~~lk~---ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
++.|...+++ ++..|..+..|.|.=|.. || .+-|..+.|..+|++-+...|-|+..|
T Consensus 50 lk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a--ER-adREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 50 LKEEAEQHKIVMETVPVLKAQADIYKADFQA--ER-HAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ch-hhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4444444444 444455555555554432 33 344556677777777777777776544
No 127
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.87 E-value=84 Score=21.71 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 179 NATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 179 ~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
|.-|+..+.+|.++|--| +| .-|.|..+++.....|-+||-
T Consensus 5 naylrkkiarlkkdnlql--------er---------deqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQL--------ER---------DEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhh--------hh---------hHhhHHHHHHHHHHHHHHHHH
Confidence 456778888888887543 33 123466788888888888874
No 128
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.11 E-value=1.1e+02 Score=22.99 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 024726 176 QKENATLKEQIETVIRENSILKRAVAIQHERQKDYEN-RNREVEYQKHMVSQYQEQLRT 233 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~q~Lkqlv~qyqEqir~ 233 (263)
..|+..+-++++.+..+|.-|+.=|.--..+..+... +.+--.+||+++.+.--+|--
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344445555556666666665555444334333321 112223344444444444433
No 129
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=41.01 E-value=31 Score=30.70 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 57 FPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 57 FP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
++..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 577899999999999999999999999774
No 130
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=40.99 E-value=13 Score=27.67 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 60 LEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 60 md~q~le~aLe~cgndlDaAIksL~ 84 (263)
++.++|+.+|+.||.++..|.+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 3678999999999999999988764
No 131
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=40.97 E-value=1.6e+02 Score=26.28 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 024726 223 MVSQYQEQLRTLEINNYALSMH 244 (263)
Q Consensus 223 lv~qyqEqir~LE~~NYaL~~H 244 (263)
+-.+|+.+|.+| +|||++=
T Consensus 144 ak~qr~~rI~rL---~~AL~IA 162 (248)
T 4e29_A 144 AQEQKDLRIRQI---EEALRYA 162 (248)
T ss_dssp HHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHH
Confidence 445666666666 7888764
No 132
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=39.99 E-value=88 Score=23.86 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~q 247 (263)
+|||++|-.=..-+ +|++. +.+-+.+.|.||..|-.|-.-+|.
T Consensus 32 ~IL~ksvdYI~~Lq-------~e~~r----~~e~e~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 32 TILKASVDYIRKLQ-------REQQR----AKDLENRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHHHHH-------HTHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHH----HHHHHHHHHHhhhhhHHHHHHHHH
Confidence 68999986432222 22222 223344556666666666555553
No 133
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=39.68 E-value=32 Score=21.93 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKR 198 (263)
|...||+.+.+|.+|..-||=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 667788888887777777763
No 134
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.58 E-value=1.4e+02 Score=23.68 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 157 EILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 157 EafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
++||+.=.++-.-=..+.+=+|...|...++.+..||+-|++. .+.+..+ |...+..|++|-.
T Consensus 17 e~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~-------~~~~~~~----------v~eLe~everL~~ 79 (104)
T 3s9g_A 17 ETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE-------SKRLDAR----------VRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccchhh----------HHHHHHHHHHHHH
Confidence 4566655554333334557779999999999999999988765 1223222 3333455666666
Q ss_pred hhHHHH
Q 024726 237 NNYALS 242 (263)
Q Consensus 237 ~NYaL~ 242 (263)
.|-.|.
T Consensus 80 ENq~L~ 85 (104)
T 3s9g_A 80 ENLQLL 85 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 135
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=39.03 E-value=59 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=32.6
Q ss_pred chHHHHHHhhC------CCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 47 PQLLDRLRAFF------PQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 47 ~~~~~~L~~lF------P~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
...|.+|+..+ +.+|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 31 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~ 76 (296)
T 1aua_A 31 EKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENC 76 (296)
T ss_dssp HHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44567776543 45899999999999999999999999763
No 136
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=38.67 E-value=1.2e+02 Score=28.31 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024726 180 ATLKEQIETVIRENSILKRAVAIQHERQKDYENR----NREVEYQKHMVSQYQEQLR 232 (263)
Q Consensus 180 ~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~q~Lkqlv~qyqEqir 232 (263)
.-||.+|+.+..-..-|..-+..|-....+.|.+ .-|+.+|+..-++|.+.+.
T Consensus 208 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~ 264 (373)
T 3hhm_B 208 DKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLT 264 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444444444444444322 2355666666666654443
No 137
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=38.15 E-value=26 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 58 PQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 58 P~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
=.|-.+-=++.|+++|=|++.||..+.++
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47888889999999999999999999996
No 138
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.14 E-value=92 Score=22.58 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
.||+.|+..=..-+.+.+....|+..|++-..+.+.+|.+|
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666665443344444444555556666555555555554
No 139
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.03 E-value=51 Score=22.99 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 024726 178 ENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 178 E~~~lk~ql~~l~~eN~iLKR 198 (263)
....|...++.|..+|.-|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666653
No 140
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=37.76 E-value=32 Score=30.30 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCC
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQSSSIPG 256 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~~~s~~g 256 (263)
++++....++...+.-+...+.+++.++..--.+...|....-...+.|
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G 163 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDG 163 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCe
Confidence 3455555556655555666666666655443333333333333334444
No 141
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.47 E-value=1.5e+02 Score=23.27 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~I 202 (263)
|.-+++.+...|..|.+.++-
T Consensus 48 L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 333444444455555555543
No 142
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=37.33 E-value=74 Score=25.57 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=26.3
Q ss_pred hcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 174 SFQKENATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
.+.++...|..+|..+.++-..||+|+.|-
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~ 33 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVE 33 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999998886
No 143
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=36.88 E-value=40 Score=28.75 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=32.5
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
..-|..|..+ +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 131 ~eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 131 DQAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3458999998 799999999999999999999988865
No 144
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.73 E-value=45 Score=22.05 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=16.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILK 197 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLK 197 (263)
+++|+|...-.+++.+|..||.-|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4566666666667777766665543
No 145
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.32 E-value=66 Score=21.28 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
+|..+|-.-++|-+|+|.+|...|--|
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455556666777777777777776554
No 146
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=35.16 E-value=43 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 50 LDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 50 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 8 I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 8 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 4444443 7789999999999999999998888764
No 147
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.03 E-value=3.2e+02 Score=26.49 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024726 215 REVEYQKHMVSQYQEQLRTLEINNYAL 241 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqEqir~LE~~NYaL 241 (263)
..++.|+.++.++.++|..||...-.+
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888765433
No 148
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=34.42 E-value=2.2e+02 Score=24.26 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 195 ILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 195 iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
++-+-..+|..-.+--++.....+.|+..+.+.+++...|+.+.-.|.-|....+
T Consensus 36 l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 36 ILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443322333334566666777777777777777777777777666554
No 149
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.15 E-value=56 Score=23.21 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 024726 176 QKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
+.....|..+++.|..+|.-|+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777766653
No 150
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=33.94 E-value=1e+02 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 024726 125 PQNGAEWVELFVKEMTSATSMDDARARASRVLEILEK 161 (263)
Q Consensus 125 p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafEk 161 (263)
+.||..|++.|++|= +.=|.|||++=|-
T Consensus 50 l~DGd~fL~~L~~e~---------~~LAlRIM~VRe~ 77 (134)
T 2peq_A 50 IQESDLYLEAMMLEN---------KELVLRILTVREN 77 (134)
T ss_dssp TTSHHHHHHHHHTTC---------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhHC---------HHHHHHHHHHHHH
Confidence 579999999998861 5558999986443
No 151
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.61 E-value=2.3e+02 Score=24.44 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=33.5
Q ss_pred hcHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 024726 174 SFQKENATLKEQIETVI-----RENSILKRAVAIQHERQKDYENRNREVEYQK-HMVSQYQEQLRT 233 (263)
Q Consensus 174 ~~~~E~~~lk~ql~~l~-----~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lk-qlv~qyqEqir~ 233 (263)
.++.++..|++|++.++ +|+.++++=+.+.|+...-. .+|+ +|+.+.||.-+.
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KI-------R~lq~~Ll~~~~~~~~~ 208 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKI-------RSLHNKLLNAAQEREKD 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHhhhh
Confidence 35666667777777765 46788999999998664333 3333 455555554443
No 152
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=33.35 E-value=1.3e+02 Score=21.48 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
.+..+..+|+.+|++-++.=|.--|.||..
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666778888888888877777788764
No 153
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.28 E-value=2.8e+02 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQKDYE 211 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~~e~e 211 (263)
++++++.++.++..-+.+-.+++.-++.++
T Consensus 378 ~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~ 407 (471)
T 3mq9_A 378 AQTRITAARDGLRAVMEARNVTHLLQQELT 407 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Confidence 334444444444444444444444444333
No 154
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.81 E-value=1.8e+02 Score=22.85 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 024726 238 NYALSMHLK 246 (263)
Q Consensus 238 NYaL~~HL~ 246 (263)
|-.|.+.+.
T Consensus 48 ~~~lq~~~~ 56 (125)
T 1joc_A 48 NQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 334444433
No 155
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.15 E-value=58 Score=23.64 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 024726 217 VEYQKHMVSQYQEQLRTLEINN 238 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~N 238 (263)
+.+|++.+.++++++..|+..|
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555666666666666554
No 156
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.70 E-value=2.2e+02 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHHHhcccHHHHHHHHhhhccc
Q 024726 65 LERALEECNADLDSTIKKLNELCSR 89 (263)
Q Consensus 65 le~aLe~cgndlDaAIksL~~L~L~ 89 (263)
|...|.+-..||-..|..|++ .|.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~-~L~ 77 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRD-SLF 77 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-HHH
Confidence 777888888899999999988 443
No 157
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=30.63 E-value=70 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=29.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHH
Q 024726 141 SATSMDDARARASRVLEILEKSIMARASDEAAQSFQKE 178 (263)
Q Consensus 141 ~Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E 178 (263)
-|.|-+=-++||..++++||++|.+-...+.++.+..|
T Consensus 27 ~a~D~~FI~~Rad~Aa~aYe~A~~~G~~~~~A~e~A~~ 64 (157)
T 2apl_A 27 MSGNNPFITARSDEALTAYCDAVAQGFSHPEAESMASE 64 (157)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 35666667899999999999999998877766555443
No 158
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=30.15 E-value=2.7e+02 Score=24.02 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=16.5
Q ss_pred cCCCcHHHHHH-----------HHHHHHHHHHHH
Q 024726 141 SATSMDDARAR-----------ASRVLEILEKSI 163 (263)
Q Consensus 141 ~Asd~dDAraR-----------AsRvLEafEksi 163 (263)
.+..+.||+.| |.|+|++.|++.
T Consensus 44 a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~ 77 (214)
T 1kmi_Z 44 AAEAIPDARDRLYYVVQMTAQAAERALNSVEASQ 77 (214)
T ss_dssp TTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999998 456666666554
No 159
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.97 E-value=8.8 Score=28.35 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 59 QLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 59 ~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
.++.++|..+|+.||.++..|.+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999888887653
No 160
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.91 E-value=53 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=19.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 173 QSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
.++|++...+++.+..|..||..||-
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777777788888877753
No 161
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=29.30 E-value=25 Score=32.97 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=31.5
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
+..|..|..+ +.+...+.+||..++||+|.|+.-|..
T Consensus 169 ~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 169 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3457888887 678899999999999999999998855
No 162
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.98 E-value=1.1e+02 Score=22.68 Aligned_cols=34 Identities=6% Similarity=-0.147 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
+.+|.+.|.+-|.+|-.|+...=.|.-.|+....
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555566666666666666666666666655443
No 163
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.93 E-value=89 Score=29.57 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 176 QKENATLKEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
...+..|+.++..|.++..+|+ +|+++.+ .|...++.-+..++|++++|..
T Consensus 41 ~~~~~dl~~~lk~le~~~~~L~----~e~e~l~------~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 41 SNVNSDIYFKLKKLEKEYELLT----LQEDYIK------DEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp -------CHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3344556666666666666554 3444332 2345566667778888887754
No 164
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=28.64 E-value=22 Score=33.30 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=34.7
Q ss_pred CcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 45 TAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 45 ~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
.....|+.|..+ +.+..++.+||..|++|.+-|..-|-+
T Consensus 324 ee~eaI~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 324 QEKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp TTHHHHHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred cCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 456778999988 899999999999999999999998876
No 165
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=28.47 E-value=34 Score=30.14 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=40.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCcchHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 25 RVRCGSASPSKFTPPPPPTTTAPQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 25 R~Rcss~sp~r~~~~~~~~~~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
|.||. .++|.|+ +.+.+...|.... .++++.++.+++.+|.|+-.|+.-|..+
T Consensus 156 ~SRc~---~~~~~~~-----~~~~~~~~L~~~~-~~~~~~~~~l~~~s~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 156 RSRCR---LHYLAPP-----PEQYAVTWLSREV-TMSQDALLAALRLSAGSPGAALALFQGD 208 (334)
T ss_dssp HTTSE---EEECCCC-----CHHHHHHHHHHHC-CCCHHHHHHHHHHTTTCHHHHHHTTSSH
T ss_pred hhcce---eeeCCCC-----CHHHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 45673 4667663 2366778888887 7899999999999999999998877654
No 166
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.20 E-value=1.4e+02 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 024726 228 QEQLRTLEINNYALSMHLKQ 247 (263)
Q Consensus 228 qEqir~LE~~NYaL~~HL~q 247 (263)
|+++..|+..|-.|...+++
T Consensus 56 q~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 56 QHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443
No 167
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=27.65 E-value=2.5e+02 Score=23.73 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 024726 123 GFPQNGAEWVELFVKEMTSATSMDDARARASRVLEILE 160 (263)
Q Consensus 123 ~~p~~g~eWVEl~V~EM~~Asd~dDAraRAsRvLEafE 160 (263)
+-+.||..|++.|++|= +.=|.|||++=|
T Consensus 67 ~~iqDGe~fl~~L~~E~---------~~LA~RIM~VRe 95 (155)
T 3hyb_A 67 GKVQDGEKYIEELFLEK---------PDLALRIMTVRE 95 (155)
T ss_dssp TCCSSHHHHHHHHHHHC---------HHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhhC---------HHHHHHHHHHHH
Confidence 34689999999999991 567899997654
No 168
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.62 E-value=2.3e+02 Score=22.54 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=12.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHh
Q 024726 172 AQSFQKENATLKEQIETVIREN 193 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN 193 (263)
+..++.|+..||..++.+..|.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666555443
No 169
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.55 E-value=1.4e+02 Score=22.33 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 194 SILKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 194 ~iLKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
.||++|+..=+.-+.+-.....++..|++-..+...+|..|
T Consensus 45 ~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555554222222222222333334444444444444444
No 170
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.48 E-value=1.5e+02 Score=20.35 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 193 NSILKRAVAIQHERQK--DY-ENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 193 N~iLKRAv~IQheR~~--e~-e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
..+.++=++-+-.|++ ++ ++...++..|..--...+.+|..|+..+..|...|
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555554433 22 23455566666666667777777777776666544
No 171
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.14 E-value=1.9e+02 Score=21.53 Aligned_cols=15 Identities=7% Similarity=0.397 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024726 213 RNREVEYQKHMVSQY 227 (263)
Q Consensus 213 ~~~E~q~Lkqlv~qy 227 (263)
+..+++.|+--+++|
T Consensus 52 kd~eI~~LqseLDKf 66 (72)
T 3nmd_A 52 KDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444444
No 172
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.08 E-value=1.7e+02 Score=20.71 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 024726 210 YENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQQ 250 (263)
Q Consensus 210 ~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~~ 250 (263)
.|....|..+||+-+..--.|+-.||-...-+.-.|++.+.
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 34456789999999999999999999998888888888763
No 173
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.06 E-value=31 Score=26.30 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 59 QLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 59 ~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
.++.++|+.+|+.||.+...|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 34678899999999999999988764
No 174
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=26.99 E-value=1.5e+02 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=35.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHh
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLN 84 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 84 (263)
++++.+-....|+-..+++-+-|+..+-|+.-|+--|.
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 89999999999999999999999999999999987654
No 175
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=26.99 E-value=2.5e+02 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 024726 222 HMVSQYQEQLRTLEIN 237 (263)
Q Consensus 222 qlv~qyqEqir~LE~~ 237 (263)
.+.....++|..+-.+
T Consensus 81 ~v~~~a~~~L~~~~~~ 96 (187)
T 3v6i_A 81 EVRRRVREALEALPQK 96 (187)
T ss_dssp HHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhhhCC
Confidence 4555556666655543
No 176
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=26.71 E-value=2.5e+02 Score=22.54 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAVAIQHERQKDY--------ENRNREVEYQKHMVSQYQEQLR-TLEINN 238 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~IQheR~~e~--------e~~~~E~q~Lkqlv~qyqEqir-~LE~~N 238 (263)
.+.+..++..|+.+...|...|.-|+ .+.+++ +....++..+..-+..|++++. .|.-.+
T Consensus 45 ~~~~~~~~~eL~~~~~~Le~~n~~L~-------~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~~~~l~~~~ 113 (155)
T 2oto_A 45 AGRDFKRAEELEKAKQALEDQRKDLE-------TKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQAS 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.64 E-value=1.7 Score=31.90 Aligned_cols=29 Identities=7% Similarity=-0.095 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024726 175 FQKENATLKEQIETVIRENSILKRAVAIQ 203 (263)
Q Consensus 175 ~~~E~~~lk~ql~~l~~eN~iLKRAv~IQ 203 (263)
..+|+..|+.++..|..||.+||.+..-.
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688889999999999999999876543
No 178
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.55 E-value=96 Score=22.86 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 170 EAAQSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 170 e~~~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
+-+..++.++..|.+..+.|.+||..|+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777664
No 179
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.52 E-value=3.1e+02 Score=23.58 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=5.7
Q ss_pred CcHHHHHHHHHH
Q 024726 144 SMDDARARASRV 155 (263)
Q Consensus 144 d~dDAraRAsRv 155 (263)
+++++++|..+.
T Consensus 68 ~i~~~~~ri~~~ 79 (256)
T 3na7_A 68 TLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 180
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=26.49 E-value=55 Score=23.47 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=32.8
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHhcccHHHHHHHHhhhcc
Q 024726 47 PQLLDRLRAFFPQLEPQLLERALEECNADLDSTIKKLNELCS 88 (263)
Q Consensus 47 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 88 (263)
++-++.|-.+ +.|.+-+.+||.-+.||++.|---|.+.-.
T Consensus 8 e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 8 SSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred hHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 4446666554 789999999999999999999998888644
No 181
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.40 E-value=1.5e+02 Score=20.03 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024726 209 DYENRNREVEYQKHMVSQYQEQLRTLEIN 237 (263)
Q Consensus 209 e~e~~~~E~q~Lkqlv~qyqEqir~LE~~ 237 (263)
.++.-.+|...-++-+..||.+++.||..
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445677777778889999999998863
No 182
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.02 E-value=92 Score=28.24 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHH
Q 024726 142 ATSMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKR 198 (263)
Q Consensus 142 Asd~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKR 198 (263)
..+.+|..+ .+.+.|++... ...+..+.+..++..|+++++.|.++..-++.
T Consensus 162 ~d~~~~~~~---e~~~~~~~~~n--~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 162 ADSFDEMNA---ELQSKLKDLFN--VDAFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp CSCCHHHHH---HHHHHHHHHHT--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444443 33345555442 22334666788888888888888665544444
No 183
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.76 E-value=2.4e+02 Score=22.00 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=12.7
Q ss_pred HhcHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q 024726 173 QSFQKENATLKEQIETVI---RENSILKRAVAI 202 (263)
Q Consensus 173 ~~~~~E~~~lk~ql~~l~---~eN~iLKRAv~I 202 (263)
..-+.++..||+.+..+. ..+.+||-=+-|
T Consensus 19 ~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~I 51 (94)
T 3jsv_C 19 VAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 51 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554443333 344444443333
No 184
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.71 E-value=1.3e+02 Score=19.51 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHHH
Q 024726 182 LKEQIETVIRENSIL 196 (263)
Q Consensus 182 lk~ql~~l~~eN~iL 196 (263)
|...++.|+.+|..|
T Consensus 6 LE~kVEeLl~~n~~L 20 (34)
T 2oxj_A 6 LEXKVXELLXKNXHL 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhH
Confidence 334444455444443
No 185
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=25.40 E-value=59 Score=29.49 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 57 FPQLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 57 FP~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
.|..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 30 l~~~dD~~LlRFLrarkfdv~~A~~~l~~~ 59 (403)
T 1olm_A 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRKH 59 (403)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 467899999999999999999999999773
No 186
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=25.32 E-value=2.7e+02 Score=22.46 Aligned_cols=48 Identities=13% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 182 LKEQIETVIRENSILKRAVAIQHERQ-KDYENRNREVEYQKHMVSQYQEQLRTLE 235 (263)
Q Consensus 182 lk~ql~~l~~eN~iLKRAv~IQheR~-~e~e~~~~E~q~Lkqlv~qyqEqir~LE 235 (263)
|+-.|++|.++...+.+..-.=-..+ .|| .+|+.++ -..|...+..+|
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~kklqLkse~---e~E~ae~---k~KYD~~lqe~e 85 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEKKSILKAEL---ERKMAEV---QAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHH
Confidence 45556666666666555443221111 244 4555554 346666666665
No 187
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=25.21 E-value=66 Score=26.86 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHhcccHHHHHHHHhhh
Q 024726 59 QLEPQLLERALEECNADLDSTIKKLNEL 86 (263)
Q Consensus 59 ~md~q~le~aLe~cgndlDaAIksL~~L 86 (263)
..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~~ 57 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKNY 57 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999773
No 188
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.99 E-value=2.8e+02 Score=22.55 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 024726 210 YENRNREVEYQKHMVSQYQEQLRTLEINNYALSMHLKQAQ 249 (263)
Q Consensus 210 ~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA~ 249 (263)
+++.+-|+..|+|-+-..-+.|.+|...|-.|+.+..-..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 4445677888999999999999999999999998876543
No 189
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.96 E-value=44 Score=29.43 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024726 176 QKENATLKEQIETVIR 191 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~ 191 (263)
++||..||+++..|..
T Consensus 25 ~~eN~~Lk~e~~~l~~ 40 (255)
T 2j5u_A 25 YTENQHLKERLEELAQ 40 (255)
T ss_dssp -CTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 190
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.94 E-value=2.2e+02 Score=21.44 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 196 LKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 196 LKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
|++-=.|-.+|..+++...++..+-..-+.+|.++|..-
T Consensus 33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~ 71 (86)
T 3nr7_A 33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444556777777777777777667788888888753
No 191
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.77 E-value=2.2e+02 Score=21.19 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024726 217 VEYQKHMVSQYQEQLRTLEINNYALSMHL 245 (263)
Q Consensus 217 ~q~Lkqlv~qyqEqir~LE~~NYaL~~HL 245 (263)
+++...++..++.+|...|...--|+-+|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 192
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=24.75 E-value=1.1e+02 Score=23.80 Aligned_cols=54 Identities=15% Similarity=0.358 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcC--CCcHHHHHHHHHHHHH-------------HHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHH
Q 024726 130 EWVELFVKEMTSA--TSMDDARARASRVLEI-------------LEKSIMARASDEAAQSFQKENATLKEQIETVIR 191 (263)
Q Consensus 130 eWVEl~V~EM~~A--sd~dDAraRAsRvLEa-------------fEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~ 191 (263)
.-|..+..||.+- .|+.-||.|-...|.| ||..|..++..+. +..|.+|+.|++
T Consensus 10 ~~vn~lID~~v~k~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlDDQ--------KkIkkRLe~Ll~ 78 (88)
T 3cqx_C 10 KHATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALEDQ--------KKIKRRLETLLR 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHhhH--------HHHHHHHHHHHH
Confidence 3455555555553 5899999999999866 9999999777754 335667777664
No 193
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.65 E-value=2.5e+02 Score=21.97 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 024726 183 KEQIETVIRENSILKRAVAIQHERQKDYENRNREVEYQK----HMVSQYQEQLRTLE 235 (263)
Q Consensus 183 k~ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~q~Lk----qlv~qyqEqir~LE 235 (263)
-++..+|+....-|-.-+..-++|+.+.++.+.++..-| +-|..+.++|..||
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666666666666665555432 33444445554444
No 194
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.56 E-value=2.1e+02 Score=20.87 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024726 196 LKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTLEINNYALS 242 (263)
Q Consensus 196 LKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~LE~~NYaL~ 242 (263)
+|+|++-=-.|.+.+- +-..+|-+-+.-.|..|.+|...|-.|+
T Consensus 18 vK~ALaaSeAkiQQLm---kVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 18 LKKALATSEAKVQQLM---KVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH---HHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 5666654433333321 1122233344445667777777776665
No 195
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.53 E-value=86 Score=22.67 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 024726 194 SILKRAVA 201 (263)
Q Consensus 194 ~iLKRAv~ 201 (263)
.||+.|+.
T Consensus 50 ~iL~~Ai~ 57 (80)
T 1hlo_A 50 QILDKATE 57 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 196
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=24.14 E-value=95 Score=27.70 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=32.5
Q ss_pred chHHHHHHhh------CCCCCHHHHHHHHHHhcccHHHHHHHHhh
Q 024726 47 PQLLDRLRAF------FPQLEPQLLERALEECNADLDSTIKKLNE 85 (263)
Q Consensus 47 ~~~~~~L~~l------FP~md~q~le~aLe~cgndlDaAIksL~~ 85 (263)
...|.+|+.. .+..|+..|-|.|.++.-|++.|++.|.+
T Consensus 40 ~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 40 EEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp HHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456777655 35689999999999999999999999976
No 197
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.00 E-value=1.9e+02 Score=20.23 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024726 157 EILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 157 EafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv~I 202 (263)
+++|+=|..|-..+. +.++....|..+..|..||--|=+...|
T Consensus 4 e~LeqWv~~Rkk~ee---ler~lrk~kk~iKklEdeNPWLGNIkGI 46 (50)
T 1a92_A 4 DILEQWVSGRKKLEE---LERDLRKLKKKIKKLEEDNPWLGNIKGI 46 (50)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCchhhhhhh
Confidence 678899988877754 7788888888999999999888777666
No 198
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.86 E-value=2.3e+02 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 172 AQSFQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 172 ~~~~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
-..||+++..|++.+..|..||.-||..+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999887643
No 199
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.51 E-value=3.9e+02 Score=28.20 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 024726 220 QKHMVSQYQEQLRTLEINNY 239 (263)
Q Consensus 220 Lkqlv~qyqEqir~LE~~NY 239 (263)
|++-+.++++++..++....
T Consensus 925 Le~~l~ele~elee~ee~l~ 944 (1184)
T 1i84_S 925 LEEILHEMEARIEEEEERSQ 944 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444333333
No 200
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.47 E-value=2.9e+02 Score=27.34 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024726 144 SMDDARARASRVLEILEKSIMARASDEAAQSFQKENATLKEQIETVIRENSILKRAV 200 (263)
Q Consensus 144 d~dDAraRAsRvLEafEksi~~ra~ae~~~~~~~E~~~lk~ql~~l~~eN~iLKRAv 200 (263)
-+.-++.|+.+++..+...|...... ++++...++++++.+..+-.-|++..
T Consensus 331 ~l~~~~~~~~~~~~~l~~~i~~~l~~-----l~~~~~~~~~~l~~~~~~~~~l~~~~ 382 (695)
T 2j69_A 331 ELRQVRTLARLACNHTREAVARRIPL-----LEQDVNELKKRIDSVEPEFNKLTGIR 382 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCSHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666555555443322 44555566666665555544444433
No 201
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.44 E-value=1.7e+02 Score=19.04 Aligned_cols=10 Identities=10% Similarity=0.188 Sum_probs=4.1
Q ss_pred HHHHHHHHhH
Q 024726 185 QIETVIRENS 194 (263)
Q Consensus 185 ql~~l~~eN~ 194 (263)
.++.|+.+|.
T Consensus 9 KVEeLl~~~~ 18 (34)
T 3c3f_A 9 KLEXILSXLY 18 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 3444444443
No 202
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=22.09 E-value=39 Score=28.77 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=40.8
Q ss_pred ccccCCCC--CCCC----CcccccCCCCCCCCCCC-------C-CCCCCcchHHHHHHhhCCC--CCHHHHHHHHHHhcc
Q 024726 11 SFFEDLPS--SPPV----SKRVRCGSASPSKFTPP-------P-PPTTTAPQLLDRLRAFFPQ--LEPQLLERALEECNA 74 (263)
Q Consensus 11 s~fedl~~--spp~----sKR~Rcss~sp~r~~~~-------~-~~~~~~~~~~~~L~~lFP~--md~q~le~aLe~cgn 74 (263)
..|+||++ -.|. --|.||.+.|++-++.- . ....+.++|-+.|..+||| +|.+-|++. --.-
T Consensus 28 ~~F~~LfPa~Y~~~ta~FltR~R~~~~S~~P~P~~~CLL~Ais~at~~s~~~LW~~Lc~~lPDSlL~n~ei~~~--GLST 105 (160)
T 4a5u_A 28 LPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTL--GLST 105 (160)
T ss_dssp EEHHHHSCCCCCTTSSCSEEEEECSCCCCCCCCSSCHHHHHHHHHHCCCHHHHHHHHTTTSCGGGTSSHHHHHH--CCCH
T ss_pred ccHHhhCCcccCCCCccccccccCCCCCCCCCcchhhhHHHHhhccCCCHHHHHHHHHHhCchhhcCchhhhhc--CCcH
Confidence 36788774 2232 38999987666544430 0 0000347888999999998 565544432 0112
Q ss_pred cHHHHHHHHhhh
Q 024726 75 DLDSTIKKLNEL 86 (263)
Q Consensus 75 dlDaAIksL~~L 86 (263)
|.=.|.-.+..+
T Consensus 106 DhltaLa~~~~~ 117 (160)
T 4a5u_A 106 EHLTALAHLYNF 117 (160)
T ss_dssp HHHHHHHHHHTE
T ss_pred HHHHHHHHHHhe
Confidence 333455555554
No 203
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.93 E-value=3.7e+02 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024726 220 QKHMVSQYQEQLRTLEINNYALSMHLK 246 (263)
Q Consensus 220 Lkqlv~qyqEqir~LE~~NYaL~~HL~ 246 (263)
..+++..+|.+|..|+.-.-.++--+.
T Consensus 88 ~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544444443333
No 204
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=21.50 E-value=3.9e+02 Score=26.38 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024726 196 LKRAVAIQHERQKDYENRNREVEYQKHMVSQYQEQLRTL 234 (263)
Q Consensus 196 LKRAv~IQheR~~e~e~~~~E~q~Lkqlv~qyqEqir~L 234 (263)
|+..+.-=..|..|++.+-.-+..|++.+..|+.-+...
T Consensus 613 l~~~~~~i~~r~~e~~~rp~~~~~~~~~~~~~~~~~~~~ 651 (675)
T 3d2f_A 613 LASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKL 651 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 334433333466666666666666666666666555444
No 205
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=21.37 E-value=83 Score=27.18 Aligned_cols=31 Identities=6% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 024726 218 EYQKHMVSQYQEQLRTLEINNYALSMHLKQA 248 (263)
Q Consensus 218 q~Lkqlv~qyqEqir~LE~~NYaL~~HL~qA 248 (263)
.+|+++|-+|-++|-+||..-|=|.+.++.-
T Consensus 58 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq 88 (182)
T 1ytz_I 58 QELQELSKKLHAKIDSVDEERYDTEVKLQKT 88 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 3577799999999999999999999988764
No 206
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.10 E-value=48 Score=24.70 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhcCCCcHHHH-----HHHHHHHHHHHHH
Q 024726 129 AEWVELFVKEMTSATSMDDAR-----ARASRVLEILEKS 162 (263)
Q Consensus 129 ~eWVEl~V~EM~~Asd~dDAr-----aRAsRvLEafEks 162 (263)
.+=|++++..=..++++-.-| +||+|+++.+|..
T Consensus 13 ~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 13 DEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMA 51 (73)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHC
Confidence 344555555444445555544 7999999999963
No 207
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.09 E-value=3.4e+02 Score=22.07 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=4.9
Q ss_pred cHHHHHHHHHHHH
Q 024726 175 FQKENATLKEQIE 187 (263)
Q Consensus 175 ~~~E~~~lk~ql~ 187 (263)
++.|+..|+++|.
T Consensus 76 LqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 76 LEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 208
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.79 E-value=2.5e+02 Score=22.33 Aligned_cols=27 Identities=37% Similarity=0.389 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024726 176 QKENATLKEQIETVIRENSILKRAVAI 202 (263)
Q Consensus 176 ~~E~~~lk~ql~~l~~eN~iLKRAv~I 202 (263)
.+|...||+|++.+.+-|.=||-.|.-
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999998888877777766643
No 209
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.76 E-value=1.6e+02 Score=19.09 Aligned_cols=11 Identities=9% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHHHHhH
Q 024726 184 EQIETVIRENS 194 (263)
Q Consensus 184 ~ql~~l~~eN~ 194 (263)
..++.|+.+|.
T Consensus 8 dKvEeLl~~~~ 18 (34)
T 2bni_A 8 DKLEEILSKGH 18 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHccH
Confidence 33444444443
No 210
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.50 E-value=24 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHhcccHHHHHHHH
Q 024726 57 FPQLEPQLLERALEECNADLDSTIKKL 83 (263)
Q Consensus 57 FP~md~q~le~aLe~cgndlDaAIksL 83 (263)
...++.++|+.+|+.| .+...|.+.|
T Consensus 18 l~~~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp CSHHHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHh
Confidence 3455788999999999 5677777655
No 211
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.41 E-value=72 Score=27.75 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024726 208 KDYENRNREVEYQKHMVSQYQEQLRTLEI 236 (263)
Q Consensus 208 ~e~e~~~~E~q~Lkqlv~qyqEqir~LE~ 236 (263)
.+++....++...+.-+..++.+++.++.
T Consensus 114 ~~~~~a~~~~~~~~a~l~~~~a~l~~a~a 142 (341)
T 3fpp_A 114 QDLDNAATEMAVKQAQIGTIDAQIKRNQA 142 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444445555555555443
No 212
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.35 E-value=3e+02 Score=25.38 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024726 215 REVEYQKHMVSQYQE 229 (263)
Q Consensus 215 ~E~q~Lkqlv~qyqE 229 (263)
..+++|++.|.+.++
T Consensus 40 ~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
Done!