BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024727
MAQVSLFSLSSPFPASAVSSRLRLNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERG
KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA
WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT
VLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV
RSSWVNLISDTEQWSNSVACIAG

High Scoring Gene Products

Symbol, full name Information P value
HEMD
AT2G26540 		protein from Arabidopsis thaliana 2.9e-64

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024727
        (263 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2066256 - symbol:HEMD species:3702 "Arabidopsi...   655  2.9e-64   1


>TAIR|locus:2066256 [details] [associations]
            symbol:HEMD species:3702 "Arabidopsis thaliana"
            [GO:0004852 "uroporphyrinogen-III synthase activity"
            evidence=IEA;ISS;IDA] [GO:0006779 "porphyrin-containing compound
            biosynthetic process" evidence=ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0033014 "tetrapyrrole biosynthetic process"
            evidence=IEA] [GO:0006780 "uroporphyrinogen III biosynthetic
            process" evidence=IDA] InterPro:IPR003754 Pfam:PF02602
            UniPathway:UPA00251 GO:GO:0009507 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006782 GO:GO:0015995 EMBL:AC002505
            GO:GO:0006780 GO:GO:0004852 EMBL:AJ314569 EMBL:BT026116
            EMBL:AY087255 EMBL:AY065389 IPI:IPI00537335 PIR:T00987
            RefSeq:NP_565625.1 UniGene:At.28505 ProteinModelPortal:O48721
            STRING:O48721 PaxDb:O48721 PRIDE:O48721 EnsemblPlants:AT2G26540.1
            GeneID:817195 KEGG:ath:AT2G26540 TAIR:At2g26540 eggNOG:COG1587
            HOGENOM:HOG000012769 InParanoid:O48721 KO:K01719 OMA:TRERGKN
            PhylomeDB:O48721 ProtClustDB:CLSN2688449
            BioCyc:MetaCyc:AT2G26540-MONOMER Genevestigator:O48721
            SUPFAM:SSF69618 Uniprot:O48721
        Length = 321

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 142/237 (59%), Positives = 163/237 (68%)

Query:    27 PLPFQFSRIQXXXXXXXXXXXXXN--PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH 84
             P P + S I              N  P+VVVTRERGKN ++IKAL K+ I  LELPLIQH
Sbjct:    40 PSPIRNS-ISSSVSSSSSSVSSSNSIPQVVVTRERGKNNQIIKALEKNGISSLELPLIQH 98

Query:    85 AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144
             A+GPD DRL+SVLN D  FDWIIITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FEE
Sbjct:    99 ARGPDFDRLASVLN-DKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEE 157

Query:   145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204
              ++S+   L VAF+PSKATGK+LASELP+   K+ +VLYPAS KA N+I EGLS RGFEV
Sbjct:   158 AMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEV 217

Query:   205 VRLNTYTTEPVHHVDQTVLKQXXXXXXXXXXXXXXXXXXXXNLISDTEQWSNSVACI 261
             VRLNTYTT PV  VD TVL Q                    +LI + EQWSN VACI
Sbjct:   218 VRLNTYTTVPVQSVD-TVLLQQALSAPVLSVASPSAVRAWLHLIQNEEQWSNYVACI 273


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       213   0.00084  112 3  11 22  0.40    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.16u 0.18s 18.34t   Elapsed:  00:00:01
  Total cpu time:  18.16u 0.18s 18.34t   Elapsed:  00:00:01
  Start:  Mon May 20 18:13:42 2013   End:  Mon May 20 18:13:43 2013

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