Query 024727
Match_columns 263
No_of_seqs 180 out of 1432
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 1.7E-41 5.9E-46 296.6 20.3 211 46-263 2-221 (254)
2 3d8t_A Uroporphyrinogen-III sy 100.0 2.5E-41 8.4E-46 300.8 16.8 214 28-263 19-248 (286)
3 3re1_A Uroporphyrinogen-III sy 100.0 4.6E-41 1.6E-45 296.7 14.4 211 46-263 10-229 (269)
4 3mw8_A Uroporphyrinogen-III sy 100.0 1.3E-39 4.4E-44 282.4 18.8 203 50-263 1-209 (240)
5 1jr2_A Uroporphyrinogen-III sy 100.0 7.3E-39 2.5E-43 284.7 19.5 213 42-263 13-247 (286)
6 1wcw_A Uroporphyrinogen III sy 100.0 6.6E-39 2.2E-43 280.9 18.7 204 46-263 4-223 (261)
7 3p9z_A Uroporphyrinogen III co 100.0 1.6E-31 5.5E-36 230.4 13.8 171 75-263 17-193 (229)
8 3p9z_A Uroporphyrinogen III co 99.7 3.4E-17 1.2E-21 140.6 13.0 118 48-175 108-225 (229)
9 1jr2_A Uroporphyrinogen-III sy 99.7 2.2E-17 7.6E-22 146.2 11.8 122 48-175 155-280 (286)
10 3re1_A Uroporphyrinogen-III sy 99.7 2.7E-17 9.4E-22 144.5 10.0 123 47-176 138-263 (269)
11 4es6_A Uroporphyrinogen-III sy 99.7 7.1E-17 2.4E-21 140.4 11.7 120 47-173 130-252 (254)
12 1wcw_A Uroporphyrinogen III sy 99.7 1.1E-16 3.6E-21 139.6 8.8 118 50-174 130-255 (261)
13 3d8t_A Uroporphyrinogen-III sy 99.7 2.1E-16 7.1E-21 140.0 10.7 118 50-174 155-280 (286)
14 3mw8_A Uroporphyrinogen-III sy 99.7 1.7E-16 5.7E-21 136.9 9.4 119 47-172 117-239 (240)
15 3gbv_A Putative LACI-family tr 96.4 0.038 1.3E-06 47.1 11.9 182 64-262 30-232 (304)
16 3gv0_A Transcriptional regulat 96.2 0.015 5.3E-07 49.6 8.4 179 64-262 31-224 (288)
17 3qk7_A Transcriptional regulat 96.2 0.016 5.5E-07 49.7 8.3 178 64-262 31-223 (294)
18 3l49_A ABC sugar (ribose) tran 96.1 0.044 1.5E-06 46.5 10.7 192 50-262 5-224 (291)
19 3g1w_A Sugar ABC transporter; 95.9 0.018 6E-07 49.5 7.2 194 50-262 4-221 (305)
20 3egc_A Putative ribose operon 95.7 0.064 2.2E-06 45.6 10.1 177 64-262 29-222 (291)
21 3d8u_A PURR transcriptional re 95.7 0.052 1.8E-06 45.6 9.3 177 64-262 24-217 (275)
22 3brq_A HTH-type transcriptiona 95.6 0.065 2.2E-06 45.4 9.4 178 64-262 42-236 (296)
23 3bbl_A Regulatory protein of L 95.5 0.068 2.3E-06 45.5 9.3 179 64-262 29-224 (287)
24 2fep_A Catabolite control prot 95.4 0.079 2.7E-06 45.2 9.6 177 64-262 37-231 (289)
25 3k9c_A Transcriptional regulat 95.4 0.087 3E-06 44.9 9.8 175 64-262 32-221 (289)
26 3g85_A Transcriptional regulat 95.4 0.11 3.6E-06 44.1 10.2 178 63-262 32-224 (289)
27 3k4h_A Putative transcriptiona 95.4 0.041 1.4E-06 46.7 7.5 178 64-262 34-228 (292)
28 3rot_A ABC sugar transporter, 95.3 0.03 1E-06 48.0 6.3 180 64-262 24-225 (297)
29 3c3k_A Alanine racemase; struc 95.2 0.25 8.5E-06 41.8 11.9 172 64-261 29-219 (285)
30 2rgy_A Transcriptional regulat 95.1 0.053 1.8E-06 46.2 7.5 177 64-262 29-225 (290)
31 3dbi_A Sugar-binding transcrip 95.0 0.16 5.6E-06 44.2 10.6 177 64-262 84-278 (338)
32 2o20_A Catabolite control prot 94.8 0.18 6.1E-06 43.9 10.3 177 64-262 84-275 (332)
33 1dbq_A Purine repressor; trans 94.8 0.11 3.9E-06 43.8 8.6 178 65-262 29-223 (289)
34 3h75_A Periplasmic sugar-bindi 94.8 0.11 3.9E-06 45.5 8.8 189 64-262 25-241 (350)
35 2fvy_A D-galactose-binding per 94.8 1.3 4.5E-05 37.4 15.5 180 64-261 23-235 (309)
36 3d4o_A Dipicolinate synthase s 94.7 0.12 4.2E-06 44.8 8.6 174 48-238 3-223 (293)
37 3clk_A Transcription regulator 94.6 0.28 9.4E-06 41.6 10.7 178 64-262 29-221 (290)
38 3ksm_A ABC-type sugar transpor 94.6 0.13 4.5E-06 43.0 8.5 179 63-262 20-221 (276)
39 3e3m_A Transcriptional regulat 94.5 0.22 7.7E-06 43.7 10.2 190 51-262 71-286 (355)
40 3lft_A Uncharacterized protein 94.3 0.53 1.8E-05 40.1 11.9 164 63-241 21-199 (295)
41 3gyb_A Transcriptional regulat 94.3 0.1 3.6E-06 43.9 7.3 174 64-262 26-212 (280)
42 3kke_A LACI family transcripti 94.3 0.27 9.2E-06 42.1 10.0 175 64-262 36-233 (303)
43 3huu_A Transcription regulator 93.9 0.12 4E-06 44.4 6.8 174 64-262 48-238 (305)
44 2qh8_A Uncharacterized protein 93.9 0.96 3.3E-05 38.6 12.7 163 64-241 28-206 (302)
45 2rir_A Dipicolinate synthase, 93.8 0.13 4.5E-06 44.7 7.0 176 48-238 5-225 (300)
46 3o74_A Fructose transport syst 93.8 0.5 1.7E-05 39.2 10.5 176 63-262 22-215 (272)
47 2hsg_A Glucose-resistance amyl 93.7 0.15 5E-06 44.4 7.2 177 64-262 81-275 (332)
48 3l6u_A ABC-type sugar transpor 93.6 0.63 2.1E-05 39.2 10.9 176 64-262 29-228 (293)
49 2h3h_A Sugar ABC transporter, 93.6 0.22 7.4E-06 42.8 8.0 177 64-262 21-216 (313)
50 3tb6_A Arabinose metabolism tr 93.6 0.21 7.1E-06 42.2 7.7 190 51-262 16-237 (298)
51 2h0a_A TTHA0807, transcription 93.5 0.29 1E-05 40.9 8.5 177 64-262 20-216 (276)
52 3jvd_A Transcriptional regulat 93.4 0.36 1.2E-05 42.1 9.3 183 50-262 64-267 (333)
53 3kjx_A Transcriptional regulat 93.3 0.13 4.6E-06 44.9 6.2 176 64-261 89-282 (344)
54 1qpz_A PURA, protein (purine n 93.1 0.36 1.2E-05 42.0 8.8 175 65-262 80-274 (340)
55 1ccw_A Protein (glutamate muta 93.0 1.1 3.8E-05 34.3 10.4 111 50-173 3-132 (137)
56 2x7x_A Sensor protein; transfe 92.4 1.4 4.9E-05 37.9 11.6 146 101-262 61-222 (325)
57 3jy6_A Transcriptional regulat 92.3 1.9 6.4E-05 36.0 11.9 176 64-262 28-217 (276)
58 3hcw_A Maltose operon transcri 92.3 0.43 1.5E-05 40.6 7.9 175 64-262 33-228 (295)
59 2yxb_A Coenzyme B12-dependent 92.2 1 3.6E-05 35.5 9.5 112 49-173 17-141 (161)
60 2dri_A D-ribose-binding protei 92.1 0.71 2.4E-05 38.6 9.0 178 64-262 22-215 (271)
61 3cs3_A Sugar-binding transcrip 92.1 0.58 2E-05 39.2 8.4 168 64-261 29-212 (277)
62 2iks_A DNA-binding transcripti 91.9 0.86 2.9E-05 38.5 9.4 175 64-262 41-233 (293)
63 2ioy_A Periplasmic sugar-bindi 91.9 2.1 7E-05 35.9 11.7 176 64-262 22-216 (283)
64 3hs3_A Ribose operon repressor 91.8 0.27 9.3E-06 41.4 6.0 165 64-261 31-213 (277)
65 3k5p_A D-3-phosphoglycerate de 91.6 1.4 4.8E-05 40.4 10.9 169 46-239 11-219 (416)
66 3m9w_A D-xylose-binding peripl 91.4 1.7 5.7E-05 37.0 10.8 176 63-261 22-221 (313)
67 2vk2_A YTFQ, ABC transporter p 91.2 0.83 2.8E-05 38.9 8.5 182 64-262 23-227 (306)
68 3e61_A Putative transcriptiona 91.0 2.2 7.6E-05 35.4 10.9 172 63-262 28-213 (277)
69 2hqb_A Transcriptional activat 90.8 1.2 4.2E-05 38.1 9.3 166 64-249 28-201 (296)
70 4fe7_A Xylose operon regulator 90.7 0.72 2.5E-05 41.5 8.0 174 65-262 46-239 (412)
71 1gud_A ALBP, D-allose-binding 90.5 3.4 0.00012 34.7 11.8 182 64-262 22-227 (288)
72 2rjo_A Twin-arginine transloca 90.4 1.3 4.3E-05 38.3 9.1 179 64-261 26-230 (332)
73 3bil_A Probable LACI-family tr 90.2 3.2 0.00011 36.1 11.7 172 64-262 87-277 (348)
74 2hmt_A YUAA protein; RCK, KTN, 89.9 1.3 4.6E-05 32.8 7.9 115 48-172 4-137 (144)
75 2pln_A HP1043, response regula 89.9 4.4 0.00015 29.5 10.8 113 44-175 12-131 (137)
76 3d02_A Putative LACI-type tran 89.7 0.82 2.8E-05 38.6 7.2 176 64-262 25-223 (303)
77 2g1u_A Hypothetical protein TM 89.5 1.2 4E-05 34.3 7.4 121 44-173 13-151 (155)
78 2qu7_A Putative transcriptiona 89.5 0.27 9.2E-06 41.5 3.8 174 65-262 29-223 (288)
79 2fn9_A Ribose ABC transporter, 88.5 2.2 7.7E-05 35.6 9.0 175 64-261 23-223 (290)
80 3llv_A Exopolyphosphatase-rela 88.5 4.7 0.00016 30.0 10.1 114 49-172 5-136 (141)
81 1lss_A TRK system potassium up 88.3 4.2 0.00014 29.8 9.6 115 50-172 4-135 (140)
82 1jye_A Lactose operon represso 88.0 2.1 7E-05 37.4 8.7 169 64-261 82-273 (349)
83 3brs_A Periplasmic binding pro 88.0 0.47 1.6E-05 39.9 4.3 177 64-262 28-224 (289)
84 3fwz_A Inner membrane protein 87.4 3.8 0.00013 30.8 8.9 112 51-171 8-137 (140)
85 3h5o_A Transcriptional regulat 87.1 1.6 5.4E-05 37.8 7.4 175 64-261 83-274 (339)
86 3miz_A Putative transcriptiona 87.0 0.35 1.2E-05 41.1 3.0 166 64-251 35-219 (301)
87 1id1_A Putative potassium chan 86.6 4.6 0.00016 30.7 9.1 114 50-172 3-138 (153)
88 3h5t_A Transcriptional regulat 86.0 0.38 1.3E-05 42.4 2.8 146 100-262 126-304 (366)
89 1tjy_A Sugar transport protein 86.0 1.5 5.3E-05 37.6 6.6 174 64-261 24-221 (316)
90 1jx6_A LUXP protein; protein-l 85.1 1.4 4.9E-05 38.0 6.0 183 64-261 65-266 (342)
91 3c85_A Putative glutathione-re 84.2 7.9 0.00027 30.2 9.6 118 47-173 36-173 (183)
92 3td9_A Branched chain amino ac 84.1 19 0.00066 30.8 13.3 136 101-251 80-227 (366)
93 3gt7_A Sensor protein; structu 84.1 11 0.00038 28.0 11.6 110 48-174 5-124 (154)
94 4eyg_A Twin-arginine transloca 83.1 7.1 0.00024 33.6 9.8 146 101-261 71-229 (368)
95 3lkv_A Uncharacterized conserv 83.0 13 0.00043 31.8 11.2 176 51-241 9-206 (302)
96 2amj_A Modulator of drug activ 81.8 2.1 7.1E-05 34.9 5.4 65 178-247 12-95 (204)
97 2fqx_A Membrane lipoprotein TM 81.8 4 0.00014 35.2 7.5 165 64-249 28-208 (318)
98 4evq_A Putative ABC transporte 81.6 24 0.00083 30.2 15.1 147 101-260 81-237 (375)
99 2q62_A ARSH; alpha/beta, flavo 81.3 6 0.0002 33.3 8.2 83 179-262 35-143 (247)
100 4imr_A 3-oxoacyl-(acyl-carrier 80.9 2.8 9.6E-05 35.5 6.1 104 26-135 11-118 (275)
101 2fzv_A Putative arsenical resi 80.8 4 0.00014 35.2 7.1 83 179-262 59-168 (279)
102 1mio_B Nitrogenase molybdenum 80.4 11 0.00039 34.5 10.5 140 62-210 184-344 (458)
103 3eod_A Protein HNR; response r 80.3 13 0.00046 26.4 11.5 112 45-174 2-123 (130)
104 2vzf_A NADH-dependent FMN redu 80.1 4.4 0.00015 32.5 6.7 82 180-262 4-109 (197)
105 3pk0_A Short-chain dehydrogena 80.0 9.5 0.00033 31.7 9.1 151 46-209 6-191 (262)
106 3rht_A (gatase1)-like protein; 79.9 3.1 0.00011 35.6 5.9 74 50-136 4-87 (259)
107 3d64_A Adenosylhomocysteinase; 79.8 22 0.00074 33.2 12.1 35 45-79 70-105 (494)
108 3hdv_A Response regulator; PSI 79.6 15 0.0005 26.4 11.5 111 49-175 6-125 (136)
109 1y80_A Predicted cobalamin bin 79.3 7.3 0.00025 31.6 7.9 90 50-145 88-188 (210)
110 2xij_A Methylmalonyl-COA mutas 79.2 20 0.00067 35.4 12.0 111 50-174 604-728 (762)
111 1sqs_A Conserved hypothetical 78.6 7.1 0.00024 32.3 7.8 70 192-262 23-123 (242)
112 3rih_A Short chain dehydrogena 78.1 15 0.00052 31.2 10.0 75 45-123 36-115 (293)
113 3hut_A Putative branched-chain 77.9 19 0.00066 30.7 10.7 137 100-251 70-217 (358)
114 1t0i_A YLR011WP; FMN binding p 77.9 10 0.00035 29.8 8.3 38 222-261 78-122 (191)
115 2i2x_B MTAC, methyltransferase 77.9 17 0.00059 30.6 10.1 110 50-172 123-242 (258)
116 2wm8_A MDP-1, magnesium-depend 77.8 7.7 0.00026 30.3 7.5 106 58-174 69-179 (187)
117 3f2v_A General stress protein 77.7 2.1 7.3E-05 34.8 4.1 68 180-248 3-84 (192)
118 4dgs_A Dehydrogenase; structur 77.5 13 0.00046 32.8 9.6 183 26-239 11-233 (340)
119 3o1i_D Periplasmic protein TOR 77.1 2.8 9.5E-05 35.2 4.9 166 64-251 26-215 (304)
120 3jtm_A Formate dehydrogenase, 76.5 20 0.0007 31.7 10.6 154 63-238 30-230 (351)
121 2q5c_A NTRC family transcripti 76.5 7.5 0.00026 31.5 7.1 54 131-192 55-108 (196)
122 3aek_A Light-independent proto 75.5 1.4 4.7E-05 40.5 2.6 145 52-209 185-339 (437)
123 3i1j_A Oxidoreductase, short c 75.5 7.6 0.00026 31.7 7.1 76 45-124 9-91 (247)
124 1sc6_A PGDH, D-3-phosphoglycer 74.9 48 0.0016 29.9 14.1 165 50-239 4-208 (404)
125 2yxb_A Coenzyme B12-dependent 74.5 16 0.00053 28.5 8.3 80 177-263 17-108 (161)
126 4g2n_A D-isomer specific 2-hyd 73.7 47 0.0016 29.2 13.6 184 26-239 11-238 (345)
127 3h1g_A Chemotaxis protein CHEY 73.4 22 0.00075 25.3 10.9 112 47-174 2-124 (129)
128 3k1y_A Oxidoreductase; structu 73.3 8.6 0.0003 31.0 6.7 82 179-261 12-124 (191)
129 1byk_A Protein (trehalose oper 73.1 35 0.0012 27.5 11.4 167 64-262 23-205 (255)
130 3t4x_A Oxidoreductase, short c 72.6 17 0.00058 30.2 8.7 37 43-79 3-40 (267)
131 3l4b_C TRKA K+ channel protien 72.4 20 0.00069 28.8 8.8 67 100-172 63-132 (218)
132 4dik_A Flavoprotein; TM0755, e 72.3 8.5 0.00029 34.9 7.1 98 162-262 246-359 (410)
133 3h7a_A Short chain dehydrogena 71.7 6.7 0.00023 32.6 5.8 75 46-124 3-81 (252)
134 3cg4_A Response regulator rece 71.7 17 0.00057 26.3 7.5 111 46-173 3-123 (142)
135 1pea_A Amidase operon; gene re 71.4 14 0.00048 32.2 8.2 136 101-250 74-219 (385)
136 3snr_A Extracellular ligand-bi 70.9 28 0.00095 29.5 9.9 137 101-251 68-213 (362)
137 4fs3_A Enoyl-[acyl-carrier-pro 70.7 18 0.0006 30.1 8.3 74 46-123 2-82 (256)
138 1req_A Methylmalonyl-COA mutas 70.7 33 0.0011 33.6 11.1 110 50-173 596-719 (727)
139 3gl9_A Response regulator; bet 70.6 25 0.00086 24.8 10.7 106 51-173 3-118 (122)
140 5nul_A Flavodoxin; electron tr 70.5 3.3 0.00011 30.9 3.3 61 63-135 17-86 (138)
141 1e5d_A Rubredoxin\:oxygen oxid 70.5 33 0.0011 30.1 10.5 79 178-262 252-343 (402)
142 3o38_A Short chain dehydrogena 70.5 15 0.0005 30.4 7.7 86 46-135 18-110 (266)
143 3eaf_A ABC transporter, substr 70.4 34 0.0012 29.7 10.5 136 100-250 74-221 (391)
144 2pju_A Propionate catabolism o 70.2 7.5 0.00026 32.4 5.7 69 129-204 64-132 (225)
145 4fgs_A Probable dehydrogenase 70.2 16 0.00053 31.2 7.9 84 27-123 12-99 (273)
146 2ohh_A Type A flavoprotein FPR 69.9 19 0.00066 31.6 8.8 93 164-262 240-350 (404)
147 3gbv_A Putative LACI-family tr 69.6 15 0.00052 30.4 7.7 82 63-145 159-243 (304)
148 3aek_B Light-independent proto 69.4 22 0.00074 33.3 9.4 140 61-211 171-314 (525)
149 4dik_A Flavoprotein; TM0755, e 69.2 8 0.00027 35.1 6.2 71 62-136 283-360 (410)
150 4gx0_A TRKA domain protein; me 69.2 36 0.0012 31.7 10.9 115 49-172 126-257 (565)
151 2cuk_A Glycerate dehydrogenase 68.6 13 0.00045 32.2 7.3 165 51-239 1-204 (311)
152 3lkb_A Probable branched-chain 68.6 18 0.0006 31.5 8.2 147 101-259 74-228 (392)
153 1rtt_A Conserved hypothetical 68.5 12 0.00042 29.5 6.6 81 180-262 8-115 (193)
154 3tem_A Ribosyldihydronicotinam 68.3 3.6 0.00012 34.2 3.4 69 179-248 2-118 (228)
155 2j48_A Two-component sensor ki 67.7 25 0.00086 23.9 7.5 109 50-175 1-116 (119)
156 1rtt_A Conserved hypothetical 67.7 9.7 0.00033 30.1 5.8 83 51-134 7-114 (193)
157 3r6w_A FMN-dependent NADH-azor 67.1 6.1 0.00021 32.0 4.5 56 192-248 24-113 (212)
158 3uce_A Dehydrogenase; rossmann 66.4 3.2 0.00011 33.7 2.6 64 47-110 3-67 (223)
159 3ctp_A Periplasmic binding pro 66.3 59 0.002 27.4 11.4 169 64-261 81-266 (330)
160 1xg5_A ARPG836; short chain de 66.3 52 0.0018 27.2 10.4 33 47-79 29-62 (279)
161 3rpe_A MDAB, modulator of drug 66.1 8.3 0.00028 31.9 5.1 65 179-248 26-109 (218)
162 1cyd_A Carbonyl reductase; sho 65.9 29 0.001 27.9 8.6 34 46-79 3-37 (244)
163 3ipc_A ABC transporter, substr 65.9 29 0.00098 29.5 8.9 136 101-250 68-215 (356)
164 2hpv_A FMN-dependent NADH-azor 65.8 8.4 0.00029 30.8 5.1 58 191-249 24-121 (208)
165 2q9u_A A-type flavoprotein; fl 65.5 49 0.0017 29.2 10.6 78 179-262 257-348 (414)
166 2g76_A 3-PGDH, D-3-phosphoglyc 65.5 70 0.0024 27.9 12.1 164 50-239 26-230 (335)
167 3rd5_A Mypaa.01249.C; ssgcid, 65.4 29 0.00099 29.1 8.7 35 45-79 11-46 (291)
168 2cok_A Poly [ADP-ribose] polym 64.6 11 0.00038 27.8 5.1 33 45-77 8-41 (113)
169 5nul_A Flavodoxin; electron tr 64.6 11 0.00039 27.8 5.3 15 159-173 7-21 (138)
170 3nrc_A Enoyl-[acyl-carrier-pro 64.5 21 0.00073 29.8 7.6 87 44-135 20-112 (280)
171 1u7z_A Coenzyme A biosynthesis 64.1 17 0.00059 30.2 6.8 34 46-79 4-54 (226)
172 4da9_A Short-chain dehydrogena 64.1 8.5 0.00029 32.5 5.0 169 25-209 10-214 (280)
173 3f2v_A General stress protein 64.1 2.1 7.4E-05 34.7 1.1 59 62-121 19-84 (192)
174 4a26_A Putative C-1-tetrahydro 63.9 8.9 0.0003 33.4 5.1 149 66-238 59-220 (300)
175 2qip_A Protein of unknown func 63.5 3 0.0001 32.8 1.8 82 62-145 63-152 (165)
176 1fs0_G ATP synthase gamma subu 63.4 9.6 0.00033 31.7 5.1 49 102-156 57-116 (230)
177 3i09_A Periplasmic branched-ch 63.4 52 0.0018 28.2 10.2 139 101-251 70-218 (375)
178 3ezx_A MMCP 1, monomethylamine 63.1 15 0.00051 30.1 6.2 90 50-145 92-194 (215)
179 3n0w_A ABC branched chain amin 63.0 36 0.0012 29.3 9.1 139 101-251 72-220 (379)
180 3lop_A Substrate binding perip 63.0 34 0.0012 29.3 8.8 143 101-259 72-226 (364)
181 3fni_A Putative diflavin flavo 62.7 11 0.00036 29.2 4.9 67 64-136 24-95 (159)
182 3l5o_A Uncharacterized protein 62.6 12 0.00041 32.1 5.6 113 46-173 137-253 (270)
183 3hdg_A Uncharacterized protein 62.4 39 0.0013 24.0 10.0 108 49-174 6-122 (137)
184 3cg0_A Response regulator rece 62.3 39 0.0013 24.0 9.4 110 46-173 5-124 (140)
185 4b79_A PA4098, probable short- 62.0 27 0.00093 29.2 7.7 32 48-79 9-41 (242)
186 2xdq_A Light-independent proto 62.0 37 0.0013 30.9 9.2 140 52-209 198-348 (460)
187 1j4a_A D-LDH, D-lactate dehydr 61.7 74 0.0025 27.6 10.8 167 51-239 2-210 (333)
188 3hly_A Flavodoxin-like domain; 61.5 12 0.00042 28.8 5.2 65 64-135 20-89 (161)
189 3m3p_A Glutamine amido transfe 61.3 7.1 0.00024 33.0 3.9 54 49-111 2-57 (250)
190 3d3w_A L-xylulose reductase; u 61.1 44 0.0015 26.8 8.8 34 46-79 3-37 (244)
191 3pdi_B Nitrogenase MOFE cofact 60.5 20 0.00068 33.0 7.1 153 50-212 169-347 (458)
192 2k6g_A Replication factor C su 59.4 15 0.00053 26.8 5.0 33 45-77 30-64 (109)
193 3u7r_A NADPH-dependent FMN red 59.0 33 0.0011 27.4 7.4 40 222-262 61-111 (190)
194 1rli_A Trp repressor binding p 59.0 10 0.00035 29.4 4.3 27 221-248 64-97 (184)
195 1t5b_A Acyl carrier protein ph 59.0 17 0.00057 28.6 5.6 57 192-249 24-113 (201)
196 3f6r_A Flavodoxin; FMN binding 58.6 10 0.00035 28.5 4.1 60 65-135 22-92 (148)
197 1usg_A Leucine-specific bindin 58.5 80 0.0027 26.3 12.6 137 101-250 68-215 (346)
198 4gi5_A Quinone reductase; prot 58.4 8.6 0.00029 33.1 4.0 69 179-248 23-138 (280)
199 2vzf_A NADH-dependent FMN redu 58.3 4.5 0.00015 32.4 2.0 85 51-135 3-109 (197)
200 3kp1_A D-ornithine aminomutase 57.9 33 0.0011 33.3 8.1 95 67-174 628-732 (763)
201 2zay_A Response regulator rece 57.8 50 0.0017 23.7 9.5 108 49-173 7-124 (147)
202 2ag5_A DHRS6, dehydrogenase/re 57.3 47 0.0016 26.9 8.4 33 47-79 3-36 (246)
203 3fni_A Putative diflavin flavo 57.2 20 0.00068 27.6 5.7 66 192-262 24-94 (159)
204 3h5i_A Response regulator/sens 57.1 34 0.0012 24.6 6.8 108 48-173 3-120 (140)
205 3tl3_A Short-chain type dehydr 57.0 9.4 0.00032 31.6 3.9 81 46-135 5-88 (257)
206 4dad_A Putative pilus assembly 56.8 52 0.0018 23.6 10.0 113 45-174 15-138 (146)
207 3lua_A Response regulator rece 56.7 51 0.0017 23.5 9.4 109 50-174 4-124 (140)
208 3lcm_A SMU.1420, putative oxid 56.3 8.4 0.00029 30.9 3.4 49 199-248 28-99 (196)
209 3hly_A Flavodoxin-like domain; 56.1 29 0.001 26.6 6.5 14 160-173 10-23 (161)
210 3grc_A Sensor protein, kinase; 56.1 52 0.0018 23.4 10.5 111 50-174 6-124 (140)
211 2gk3_A Putative cytoplasmic pr 56.0 8.5 0.00029 32.4 3.5 47 58-110 38-85 (256)
212 3sg0_A Extracellular ligand-bi 55.9 40 0.0014 28.8 8.1 158 91-262 79-247 (386)
213 2yvq_A Carbamoyl-phosphate syn 55.7 22 0.00075 27.1 5.6 38 111-158 36-73 (143)
214 3f6r_A Flavodoxin; FMN binding 55.3 28 0.00097 25.9 6.2 34 228-262 49-92 (148)
215 1mio_A Nitrogenase molybdenum 55.1 16 0.00056 34.3 5.6 140 61-211 220-368 (533)
216 2aef_A Calcium-gated potassium 55.1 20 0.0007 29.0 5.7 111 50-170 9-136 (234)
217 3gem_A Short chain dehydrogena 55.0 11 0.00037 31.5 4.0 72 45-124 22-96 (260)
218 2dr1_A PH1308 protein, 386AA l 54.7 78 0.0027 26.9 9.8 60 176-237 93-155 (386)
219 3k4h_A Putative transcriptiona 54.4 21 0.00072 29.4 5.8 90 49-138 130-231 (292)
220 2gkg_A Response regulator homo 54.3 50 0.0017 22.7 8.9 109 51-173 6-121 (127)
221 1dxy_A D-2-hydroxyisocaproate 54.2 81 0.0028 27.4 9.8 167 51-239 1-208 (333)
222 4e6p_A Probable sorbitol dehyd 54.2 14 0.00049 30.5 4.6 74 43-123 1-78 (259)
223 2yxd_A Probable cobalt-precorr 54.1 66 0.0023 24.0 9.2 94 109-212 65-159 (183)
224 1vjo_A Alanine--glyoxylate ami 54.1 54 0.0018 28.2 8.6 60 176-237 107-168 (393)
225 2fzv_A Putative arsenical resi 53.8 17 0.00057 31.3 5.0 84 50-134 58-167 (279)
226 4gi5_A Quinone reductase; prot 53.5 7.9 0.00027 33.3 2.9 75 48-122 20-139 (280)
227 2hqr_A Putative transcriptiona 53.5 78 0.0027 24.7 10.1 106 52-175 2-113 (223)
228 3kht_A Response regulator; PSI 53.2 59 0.002 23.2 10.8 110 49-173 4-124 (144)
229 3ek2_A Enoyl-(acyl-carrier-pro 53.0 56 0.0019 26.6 8.2 75 46-124 10-89 (271)
230 2rjn_A Response regulator rece 53.0 63 0.0022 23.5 12.2 114 46-174 3-123 (154)
231 4dim_A Phosphoribosylglycinami 52.9 81 0.0028 27.5 9.7 77 48-125 5-95 (403)
232 3s99_A Basic membrane lipoprot 52.8 1.1E+02 0.0038 26.8 10.5 123 101-236 85-216 (356)
233 1xrs_B D-lysine 5,6-aminomutas 52.8 34 0.0012 29.1 6.7 92 69-173 152-254 (262)
234 1d4a_A DT-diaphorase, quinone 52.3 12 0.00041 31.8 3.9 68 180-248 4-119 (273)
235 4id3_A DNA repair protein REV1 52.2 21 0.0007 24.4 4.5 34 44-77 4-38 (92)
236 1l7b_A DNA ligase; BRCT, autos 52.0 19 0.00065 25.4 4.3 33 45-77 5-38 (92)
237 2fz5_A Flavodoxin; alpha/beta 51.8 19 0.00066 26.2 4.6 34 227-262 45-87 (137)
238 3f9i_A 3-oxoacyl-[acyl-carrier 51.6 63 0.0021 26.0 8.2 34 46-79 10-44 (249)
239 2ch1_A 3-hydroxykynurenine tra 51.3 62 0.0021 27.7 8.6 59 177-237 92-152 (396)
240 2qr3_A Two-component system re 51.2 62 0.0021 22.8 9.1 108 50-175 3-124 (140)
241 3egc_A Putative ribose operon 51.0 67 0.0023 26.3 8.4 90 49-138 124-225 (291)
242 3m6m_D Sensory/regulatory prot 50.9 67 0.0023 23.2 12.0 113 46-175 10-134 (143)
243 2ebu_A Replication factor C su 50.6 22 0.00074 26.2 4.6 32 46-77 21-54 (112)
244 3l5o_A Uncharacterized protein 50.6 49 0.0017 28.2 7.4 78 177-263 140-220 (270)
245 3u7q_A Nitrogenase molybdenum- 50.4 41 0.0014 31.1 7.5 136 60-210 233-380 (492)
246 3njr_A Precorrin-6Y methylase; 50.1 49 0.0017 26.1 7.2 99 110-216 86-186 (204)
247 3h75_A Periplasmic sugar-bindi 50.1 1.1E+02 0.0037 25.9 9.9 92 51-145 146-253 (350)
248 3g85_A Transcriptional regulat 50.1 18 0.00061 29.8 4.6 86 50-135 127-224 (289)
249 3lte_A Response regulator; str 49.9 63 0.0022 22.6 11.0 110 49-175 5-123 (132)
250 1rli_A Trp repressor binding p 49.9 11 0.00037 29.3 3.0 70 51-121 4-97 (184)
251 1qgu_B Protein (nitrogenase mo 49.8 13 0.00045 34.8 4.0 141 62-210 233-392 (519)
252 3u62_A Shikimate dehydrogenase 49.7 9.2 0.00031 32.3 2.7 151 61-240 14-178 (253)
253 2gk4_A Conserved hypothetical 49.5 52 0.0018 27.3 7.3 31 49-79 2-49 (232)
254 2huf_A Alanine glyoxylate amin 49.1 80 0.0027 27.0 8.9 59 177-237 93-153 (393)
255 4gkb_A 3-oxoacyl-[acyl-carrier 48.9 1E+02 0.0034 25.7 9.2 151 46-210 3-184 (258)
256 1q7r_A Predicted amidotransfer 48.8 32 0.0011 27.8 5.9 50 48-112 21-70 (219)
257 2xw6_A MGS, methylglyoxal synt 48.8 23 0.00079 27.0 4.6 88 128-249 31-123 (134)
258 2q62_A ARSH; alpha/beta, flavo 48.7 21 0.00071 29.9 4.8 72 49-121 33-124 (247)
259 3glv_A Lipopolysaccharide core 48.5 69 0.0024 24.0 7.4 87 61-159 17-117 (143)
260 3t6k_A Response regulator rece 48.2 71 0.0024 22.7 10.5 108 50-174 4-121 (136)
261 4e5n_A Thermostable phosphite 48.1 86 0.0029 27.2 8.9 165 50-238 2-210 (330)
262 3l9w_A Glutathione-regulated p 48.1 97 0.0033 27.8 9.5 102 50-160 4-123 (413)
263 1e5d_A Rubredoxin\:oxygen oxid 47.5 32 0.0011 30.2 6.1 79 50-135 252-343 (402)
264 3l4e_A Uncharacterized peptida 47.3 26 0.0009 28.4 5.1 73 46-126 23-102 (206)
265 3i4f_A 3-oxoacyl-[acyl-carrier 47.1 52 0.0018 26.8 7.1 87 46-135 3-94 (264)
266 3l07_A Bifunctional protein fo 47.1 55 0.0019 28.2 7.2 148 65-237 55-213 (285)
267 3rpe_A MDAB, modulator of drug 46.7 12 0.00042 30.9 3.0 43 64-112 51-93 (218)
268 1ycg_A Nitric oxide reductase; 46.6 79 0.0027 27.5 8.6 94 163-262 234-342 (398)
269 3dii_A Short-chain dehydrogena 46.2 50 0.0017 26.8 6.8 67 50-123 2-71 (247)
270 3fvw_A Putative NAD(P)H-depend 46.2 27 0.00093 27.7 4.9 67 180-249 4-94 (192)
271 3ucx_A Short chain dehydrogena 46.1 28 0.00095 28.8 5.2 78 43-124 4-85 (264)
272 4hs4_A Chromate reductase; tri 46.0 34 0.0011 27.4 5.5 40 222-262 67-116 (199)
273 3l7n_A Putative uncharacterize 45.8 16 0.00055 30.1 3.6 52 51-111 1-54 (236)
274 4evq_A Putative ABC transporte 45.8 43 0.0015 28.5 6.6 84 49-136 150-240 (375)
275 3tb6_A Arabinose metabolism tr 45.7 19 0.00064 29.7 4.1 74 64-137 157-239 (298)
276 3r6w_A FMN-dependent NADH-azor 45.4 13 0.00045 29.9 2.9 21 64-84 24-46 (212)
277 3l6u_A ABC-type sugar transpor 44.9 27 0.00093 28.7 4.9 81 52-136 137-229 (293)
278 2hna_A Protein MIOC, flavodoxi 44.9 26 0.0009 26.1 4.5 59 64-135 21-89 (147)
279 2hpv_A FMN-dependent NADH-azor 44.7 8.7 0.0003 30.7 1.7 20 63-82 24-45 (208)
280 3sxp_A ADP-L-glycero-D-mannohe 44.7 1.5E+02 0.005 25.3 11.5 35 45-79 5-42 (362)
281 2ark_A Flavodoxin; FMN, struct 44.7 40 0.0014 26.3 5.7 21 228-249 52-79 (188)
282 3uf0_A Short-chain dehydrogena 44.7 27 0.00093 29.2 4.9 93 24-125 9-105 (273)
283 3lkb_A Probable branched-chain 44.7 98 0.0034 26.5 8.8 85 48-135 141-231 (392)
284 3t7c_A Carveol dehydrogenase; 44.6 26 0.0009 29.6 4.9 82 41-123 19-113 (299)
285 3g1w_A Sugar ABC transporter; 44.6 82 0.0028 25.9 8.0 87 51-137 128-223 (305)
286 3i42_A Response regulator rece 44.6 76 0.0026 22.0 7.9 109 50-175 3-120 (127)
287 3p2o_A Bifunctional protein fo 44.5 58 0.002 28.0 7.0 148 65-237 54-212 (285)
288 3svl_A Protein YIEF; E. coli C 44.5 34 0.0012 27.2 5.3 40 222-262 66-115 (193)
289 3snr_A Extracellular ligand-bi 44.5 60 0.0021 27.3 7.3 83 48-134 133-222 (362)
290 1sqs_A Conserved hypothetical 44.4 13 0.00043 30.7 2.7 57 65-121 24-105 (242)
291 3v2h_A D-beta-hydroxybutyrate 44.3 23 0.00079 29.7 4.4 87 25-124 10-101 (281)
292 1o2d_A Alcohol dehydrogenase, 44.3 83 0.0029 27.7 8.3 61 178-241 40-112 (371)
293 3tem_A Ribosyldihydronicotinam 44.3 12 0.0004 31.0 2.5 21 64-84 23-43 (228)
294 1t0i_A YLR011WP; FMN binding p 44.2 19 0.00064 28.2 3.6 18 94-111 76-93 (191)
295 3aek_B Light-independent proto 43.9 54 0.0019 30.6 7.3 108 28-155 262-370 (525)
296 3npg_A Uncharacterized DUF364 43.8 33 0.0011 28.9 5.2 112 132-263 82-198 (249)
297 3ftp_A 3-oxoacyl-[acyl-carrier 43.7 24 0.00083 29.4 4.5 78 42-123 20-101 (270)
298 2amj_A Modulator of drug activ 43.5 13 0.00044 30.0 2.6 52 64-121 38-96 (204)
299 3p0r_A Azoreductase; structura 43.4 34 0.0012 27.5 5.2 69 179-248 5-118 (211)
300 2ohh_A Type A flavoprotein FPR 43.4 33 0.0011 30.1 5.5 64 65-135 277-350 (404)
301 4dry_A 3-oxoacyl-[acyl-carrier 43.1 57 0.002 27.2 6.8 75 45-123 28-107 (281)
302 3e8x_A Putative NAD-dependent 43.0 24 0.00081 28.4 4.2 34 46-79 17-51 (236)
303 1a4i_A Methylenetetrahydrofola 43.0 67 0.0023 27.8 7.2 148 66-238 57-218 (301)
304 3i45_A Twin-arginine transloca 42.8 1.6E+02 0.0054 25.2 9.9 145 101-260 72-232 (387)
305 2rdm_A Response regulator rece 42.8 82 0.0028 21.9 10.5 110 48-174 3-120 (132)
306 3s2u_A UDP-N-acetylglucosamine 42.7 1.2E+02 0.0041 26.3 9.1 61 129-198 255-319 (365)
307 3h9u_A Adenosylhomocysteinase; 42.7 2E+02 0.0068 26.2 13.6 35 44-78 37-72 (436)
308 3gv0_A Transcriptional regulat 42.7 23 0.00078 29.3 4.1 95 49-145 126-234 (288)
309 3v2g_A 3-oxoacyl-[acyl-carrier 42.5 26 0.00089 29.3 4.5 92 25-123 10-105 (271)
310 2xok_G ATP synthase subunit ga 42.4 28 0.00096 30.4 4.7 65 102-174 104-186 (311)
311 2dri_A D-ribose-binding protei 42.4 32 0.0011 28.1 5.0 82 51-136 124-216 (271)
312 3h5l_A Putative branched-chain 42.3 72 0.0025 27.8 7.6 82 49-133 163-251 (419)
313 3tzq_B Short-chain type dehydr 42.2 28 0.00097 28.9 4.7 75 43-123 4-81 (271)
314 2h1q_A Hypothetical protein; Z 42.2 74 0.0025 27.0 7.3 87 168-263 132-220 (270)
315 3uve_A Carveol dehydrogenase ( 42.2 30 0.001 28.9 4.8 158 43-209 4-208 (286)
316 3rht_A (gatase1)-like protein; 42.2 44 0.0015 28.3 5.8 63 179-249 5-77 (259)
317 1y80_A Predicted cobalamin bin 42.0 84 0.0029 25.0 7.4 79 178-263 88-179 (210)
318 3ksm_A ABC-type sugar transpor 42.0 30 0.001 28.1 4.7 86 50-137 127-223 (276)
319 3rqi_A Response regulator prot 41.9 1.1E+02 0.0038 23.1 11.7 110 47-174 4-122 (184)
320 3ddh_A Putative haloacid dehal 41.9 37 0.0013 26.2 5.1 90 59-160 107-203 (234)
321 1xdz_A Methyltransferase GIDB; 41.6 1.1E+02 0.0037 24.6 8.1 93 110-211 103-203 (240)
322 3tsc_A Putative oxidoreductase 41.3 30 0.001 28.7 4.7 37 43-79 4-41 (277)
323 4em8_A Ribose 5-phosphate isom 41.3 1.2E+02 0.0041 23.4 9.1 112 50-173 7-127 (148)
324 2nv0_A Glutamine amidotransfer 41.1 42 0.0014 26.4 5.3 78 51-144 2-87 (196)
325 3isl_A Purine catabolism prote 41.0 88 0.003 26.9 7.9 60 176-237 84-145 (416)
326 3oig_A Enoyl-[acyl-carrier-pro 41.0 40 0.0014 27.6 5.4 75 46-124 3-84 (266)
327 2p91_A Enoyl-[acyl-carrier-pro 40.8 28 0.00095 29.1 4.4 74 46-123 17-95 (285)
328 3svt_A Short-chain type dehydr 40.7 30 0.001 28.8 4.6 77 43-123 4-87 (281)
329 4a5o_A Bifunctional protein fo 40.6 59 0.002 28.0 6.4 147 65-237 56-213 (286)
330 1k68_A Phytochrome response re 40.6 91 0.0031 21.7 11.1 110 50-173 2-127 (140)
331 3nnk_A Ureidoglycine-glyoxylat 40.3 1E+02 0.0035 26.4 8.2 58 177-236 87-146 (411)
332 3ngx_A Bifunctional protein fo 40.2 41 0.0014 28.8 5.3 146 65-237 48-202 (276)
333 2dr1_A PH1308 protein, 386AA l 40.2 28 0.00097 29.8 4.5 75 49-124 94-175 (386)
334 3pgx_A Carveol dehydrogenase; 40.1 32 0.0011 28.6 4.7 159 43-210 8-209 (280)
335 4h15_A Short chain alcohol deh 40.1 34 0.0011 28.7 4.8 33 47-79 8-41 (261)
336 4eyg_A Twin-arginine transloca 40.0 62 0.0021 27.4 6.6 93 48-143 137-239 (368)
337 3hs3_A Ribose operon repressor 39.6 46 0.0016 27.2 5.6 87 48-137 120-216 (277)
338 1qsg_A Enoyl-[acyl-carrier-pro 39.5 32 0.0011 28.3 4.5 76 44-123 3-83 (265)
339 3vot_A L-amino acid ligase, BL 39.3 1.9E+02 0.0063 25.5 9.9 78 48-125 3-98 (425)
340 1vmd_A MGS, methylglyoxal synt 39.1 61 0.0021 25.9 5.8 87 128-248 55-146 (178)
341 3ph3_A Ribose-5-phosphate isom 39.0 1.4E+02 0.0048 23.5 8.4 112 50-173 20-141 (169)
342 3g89_A Ribosomal RNA small sub 39.0 89 0.003 25.6 7.2 97 110-210 113-212 (249)
343 3sx2_A Putative 3-ketoacyl-(ac 38.9 35 0.0012 28.3 4.7 35 45-79 8-43 (278)
344 3rkr_A Short chain oxidoreduct 38.8 33 0.0011 28.2 4.5 87 45-135 24-115 (262)
345 2a5l_A Trp repressor binding p 38.7 30 0.001 27.0 4.1 71 191-262 24-115 (200)
346 3hzh_A Chemotaxis response reg 38.7 1.1E+02 0.0038 22.2 11.0 110 50-175 36-155 (157)
347 3ruf_A WBGU; rossmann fold, UD 38.7 1.8E+02 0.006 24.5 10.2 33 47-79 22-55 (351)
348 3k5i_A Phosphoribosyl-aminoimi 38.5 2.1E+02 0.007 25.2 10.6 34 47-80 21-54 (403)
349 3rfq_A Pterin-4-alpha-carbinol 38.5 37 0.0013 27.2 4.5 50 61-114 50-101 (185)
350 3qk7_A Transcriptional regulat 38.5 70 0.0024 26.4 6.6 75 64-138 147-226 (294)
351 3tpc_A Short chain alcohol deh 38.5 35 0.0012 27.9 4.6 73 45-123 2-77 (257)
352 2qh8_A Uncharacterized protein 38.4 68 0.0023 26.7 6.5 63 193-262 29-97 (302)
353 3p19_A BFPVVD8, putative blue 38.3 35 0.0012 28.3 4.6 37 43-79 9-46 (266)
354 2ywj_A Glutamine amidotransfer 38.3 58 0.002 25.3 5.7 69 51-137 1-77 (186)
355 1oi4_A Hypothetical protein YH 38.2 1.3E+02 0.0046 23.4 8.0 102 38-145 11-134 (193)
356 3gyb_A Transcriptional regulat 38.2 60 0.0021 26.3 6.1 87 49-138 117-215 (280)
357 3dzz_A Putative pyridoxal 5'-p 38.1 1.2E+02 0.0042 25.7 8.4 74 49-125 108-193 (391)
358 4fn4_A Short chain dehydrogena 38.1 29 0.001 29.1 4.1 150 46-209 3-187 (254)
359 8abp_A L-arabinose-binding pro 38.0 58 0.002 26.8 6.0 74 63-138 153-235 (306)
360 4e3z_A Putative oxidoreductase 38.0 82 0.0028 25.8 6.9 83 28-123 13-100 (272)
361 3rot_A ABC sugar transporter, 37.9 38 0.0013 28.1 4.8 83 50-137 130-227 (297)
362 3don_A Shikimate dehydrogenase 37.9 37 0.0013 28.9 4.7 156 61-241 14-188 (277)
363 3kto_A Response regulator rece 37.9 1E+02 0.0036 21.7 8.6 107 50-174 6-123 (136)
364 2q9u_A A-type flavoprotein; fl 37.8 47 0.0016 29.3 5.6 79 50-135 256-348 (414)
365 4gx0_A TRKA domain protein; me 37.5 1E+02 0.0035 28.5 8.2 112 51-172 349-475 (565)
366 3tnl_A Shikimate dehydrogenase 37.4 63 0.0022 28.0 6.2 32 46-77 150-182 (315)
367 3is3_A 17BETA-hydroxysteroid d 37.4 40 0.0014 27.9 4.8 77 43-123 11-92 (270)
368 3lft_A Uncharacterized protein 37.1 82 0.0028 26.0 6.8 63 193-262 23-90 (295)
369 3o74_A Fructose transport syst 37.0 32 0.0011 27.9 4.1 84 50-137 120-217 (272)
370 2qvg_A Two component response 36.8 1.1E+02 0.0037 21.6 9.8 109 49-173 6-131 (143)
371 3kke_A LACI family transcripti 36.8 51 0.0018 27.3 5.5 90 49-138 130-236 (303)
372 3ha2_A NADPH-quinone reductase 36.8 59 0.002 25.6 5.5 44 200-248 27-77 (177)
373 3n75_A LDC, lysine decarboxyla 36.6 78 0.0027 30.8 7.3 69 61-138 18-86 (715)
374 3c3m_A Response regulator rece 36.5 1.1E+02 0.0038 21.6 6.9 109 50-174 3-120 (138)
375 3evz_A Methyltransferase; NYSG 36.3 40 0.0014 26.8 4.5 47 165-211 159-207 (230)
376 3orq_A N5-carboxyaminoimidazol 36.3 1E+02 0.0036 26.9 7.6 36 46-81 8-43 (377)
377 2fn9_A Ribose ABC transporter, 36.2 34 0.0012 28.1 4.2 44 93-136 182-225 (290)
378 1t0b_A THUA-like protein; treh 36.2 50 0.0017 27.6 5.2 63 64-137 36-106 (252)
379 3nbm_A PTS system, lactose-spe 36.1 67 0.0023 23.2 5.3 74 178-262 6-85 (108)
380 1y1p_A ARII, aldehyde reductas 35.9 47 0.0016 27.9 5.2 38 42-79 3-41 (342)
381 3hv2_A Response regulator/HD d 35.9 1.2E+02 0.0041 21.8 11.3 110 47-174 11-130 (153)
382 1p9l_A Dihydrodipicolinate red 35.7 60 0.0021 27.1 5.6 60 180-248 2-65 (245)
383 2xdq_B Light-independent proto 35.6 25 0.00086 32.7 3.5 172 63-251 186-374 (511)
384 2i2x_B MTAC, methyltransferase 35.6 1.9E+02 0.0064 23.9 10.0 79 177-263 122-212 (258)
385 2ew8_A (S)-1-phenylethanol deh 35.5 43 0.0015 27.3 4.7 72 46-123 3-78 (249)
386 2h7i_A Enoyl-[acyl-carrier-pro 35.4 42 0.0014 27.7 4.6 73 45-123 2-80 (269)
387 2pd6_A Estradiol 17-beta-dehyd 35.3 47 0.0016 26.9 4.9 34 46-79 3-37 (264)
388 3euc_A Histidinol-phosphate am 35.2 2E+02 0.0067 24.2 9.2 84 163-251 94-189 (367)
389 2b4a_A BH3024; flavodoxin-like 35.1 1.1E+02 0.0037 21.5 6.5 113 46-175 11-129 (138)
390 4e7p_A Response regulator; DNA 35.1 1.2E+02 0.0042 21.7 10.7 113 47-175 17-138 (150)
391 3kgw_A Alanine-glyoxylate amin 35.0 1.6E+02 0.0055 24.8 8.6 60 176-237 96-157 (393)
392 4iin_A 3-ketoacyl-acyl carrier 35.0 40 0.0014 27.8 4.5 90 25-123 10-103 (271)
393 3flh_A Uncharacterized protein 34.9 79 0.0027 22.8 5.6 40 163-203 57-99 (124)
394 3ix1_A N-formyl-4-amino-5-amin 34.9 40 0.0014 28.0 4.5 66 42-113 98-165 (302)
395 1zem_A Xylitol dehydrogenase; 34.8 44 0.0015 27.4 4.7 73 46-123 3-80 (262)
396 3dyd_A Tyrosine aminotransfera 34.8 1.4E+02 0.0048 26.1 8.3 85 164-251 128-223 (427)
397 1nff_A Putative oxidoreductase 34.8 46 0.0016 27.3 4.8 34 46-79 3-37 (260)
398 1ka9_H Imidazole glycerol phos 34.7 79 0.0027 24.9 6.0 47 51-112 3-50 (200)
399 1o5i_A 3-oxoacyl-(acyl carrier 34.6 44 0.0015 27.3 4.6 37 43-79 12-49 (249)
400 2z9v_A Aspartate aminotransfer 34.6 1.7E+02 0.0057 24.9 8.6 61 176-238 81-144 (392)
401 1lnq_A MTHK channels, potassiu 34.5 1.3E+02 0.0044 25.7 7.8 111 50-170 115-242 (336)
402 1k66_A Phytochrome response re 34.4 1.2E+02 0.0041 21.3 10.5 110 48-173 4-134 (149)
403 1ydg_A Trp repressor binding p 34.3 76 0.0026 25.0 5.9 82 179-261 7-121 (211)
404 3iwt_A 178AA long hypothetical 34.2 31 0.0011 27.0 3.4 49 62-114 42-93 (178)
405 1b93_A Protein (methylglyoxal 34.1 53 0.0018 25.5 4.6 86 128-248 39-130 (152)
406 3pxx_A Carveol dehydrogenase; 34.1 50 0.0017 27.3 4.9 35 45-79 5-40 (287)
407 3grk_A Enoyl-(acyl-carrier-pro 34.1 54 0.0018 27.6 5.2 87 45-135 26-118 (293)
408 1b0a_A Protein (fold bifunctio 34.0 66 0.0022 27.7 5.6 146 66-237 55-211 (288)
409 3zrp_A Serine-pyruvate aminotr 33.9 1.4E+02 0.0047 25.2 7.9 34 176-209 75-108 (384)
410 3d7l_A LIN1944 protein; APC893 33.7 71 0.0024 24.6 5.6 60 51-111 4-67 (202)
411 3en0_A Cyanophycinase; serine 33.6 61 0.0021 27.8 5.4 79 167-249 44-129 (291)
412 1lk5_A D-ribose-5-phosphate is 33.6 1.3E+02 0.0043 24.8 7.2 50 96-145 14-67 (229)
413 3u7i_A FMN-dependent NADH-azor 33.6 51 0.0017 26.9 4.8 69 179-248 5-120 (223)
414 3m3p_A Glutamine amido transfe 33.5 83 0.0029 26.2 6.2 53 178-237 3-57 (250)
415 2h3h_A Sugar ABC transporter, 33.5 60 0.002 27.0 5.4 85 50-138 123-219 (313)
416 1iy8_A Levodione reductase; ox 33.4 47 0.0016 27.3 4.6 35 45-79 8-43 (267)
417 3b6i_A Flavoprotein WRBA; flav 33.4 66 0.0023 24.9 5.3 69 192-262 21-112 (198)
418 1uj6_A Ribose 5-phosphate isom 33.3 1.3E+02 0.0043 24.8 7.2 54 96-155 16-73 (227)
419 1d4a_A DT-diaphorase, quinone 33.2 26 0.00089 29.6 2.9 58 65-122 25-120 (273)
420 3snk_A Response regulator CHEY 33.0 1.3E+02 0.0043 21.1 7.3 109 49-175 13-131 (135)
421 1ycg_A Nitric oxide reductase; 33.0 42 0.0014 29.4 4.4 64 65-135 272-342 (398)
422 3nyw_A Putative oxidoreductase 32.8 40 0.0014 27.6 4.1 74 46-123 3-83 (250)
423 3l4e_A Uncharacterized peptida 32.7 1.1E+02 0.0036 24.7 6.5 60 177-241 26-92 (206)
424 2z9v_A Aspartate aminotransfer 32.7 38 0.0013 29.1 4.1 75 49-124 82-163 (392)
425 2jgn_A DBX, DDX3, ATP-dependen 32.7 98 0.0033 24.0 6.2 18 187-204 56-73 (185)
426 1gee_A Glucose 1-dehydrogenase 32.6 36 0.0012 27.6 3.7 34 45-78 2-36 (261)
427 3heb_A Response regulator rece 32.5 1.4E+02 0.0047 21.4 11.6 108 50-173 4-131 (152)
428 3i6i_A Putative leucoanthocyan 32.2 1.1E+02 0.0037 26.0 6.9 78 47-125 7-110 (346)
429 4dqx_A Probable oxidoreductase 32.1 51 0.0018 27.5 4.7 71 46-123 23-97 (277)
430 3pzy_A MOG; ssgcid, seattle st 32.1 46 0.0016 25.9 4.0 49 61-114 28-78 (164)
431 2zki_A 199AA long hypothetical 32.1 21 0.00073 28.0 2.1 80 180-261 6-113 (199)
432 3jte_A Response regulator rece 32.1 1.3E+02 0.0045 21.1 11.4 108 50-174 3-120 (143)
433 3tjr_A Short chain dehydrogena 31.9 56 0.0019 27.6 4.9 36 44-79 25-61 (301)
434 2jba_A Phosphate regulon trans 31.9 1.2E+02 0.0042 20.7 8.1 109 51-173 3-118 (127)
435 1qv9_A F420-dependent methylen 31.9 27 0.00093 29.5 2.7 50 102-160 64-121 (283)
436 1eo1_A Hypothetical protein MT 31.9 69 0.0023 23.3 4.8 48 119-173 59-106 (124)
437 1dih_A Dihydrodipicolinate red 31.6 25 0.00086 29.8 2.6 23 227-250 71-94 (273)
438 2bkw_A Alanine-glyoxylate amin 31.5 1.9E+02 0.0065 24.3 8.4 60 177-237 85-146 (385)
439 3l7o_A Ribose-5-phosphate isom 31.5 1.1E+02 0.0038 25.2 6.4 54 96-155 12-68 (225)
440 2bkw_A Alanine-glyoxylate amin 31.5 46 0.0016 28.4 4.4 75 49-124 85-166 (385)
441 1ccw_A Protein (glutamate muta 31.3 36 0.0012 25.5 3.2 66 190-262 20-92 (137)
442 3l3e_A DNA topoisomerase 2-bin 31.3 42 0.0014 23.8 3.5 34 44-77 12-46 (107)
443 1kjq_A GART 2, phosphoribosylg 31.3 92 0.0031 27.0 6.4 75 49-124 10-96 (391)
444 4eso_A Putative oxidoreductase 31.2 54 0.0019 26.8 4.6 71 46-123 4-78 (255)
445 3ksu_A 3-oxoacyl-acyl carrier 31.1 49 0.0017 27.3 4.3 35 45-79 6-41 (262)
446 2pjm_A Ribose-5-phosphate isom 31.1 71 0.0024 26.4 5.2 54 96-155 14-70 (226)
447 3dbi_A Sugar-binding transcrip 31.1 85 0.0029 26.4 6.0 89 49-137 180-280 (338)
448 1jx6_A LUXP protein; protein-l 31.0 66 0.0022 27.1 5.3 86 50-138 175-270 (342)
449 3ai3_A NADPH-sorbose reductase 31.0 61 0.0021 26.5 4.9 34 46-79 3-37 (263)
450 1v8b_A Adenosylhomocysteinase; 31.0 1.9E+02 0.0065 26.6 8.6 123 101-236 192-320 (479)
451 3gvc_A Oxidoreductase, probabl 30.9 54 0.0018 27.4 4.6 70 47-123 26-99 (277)
452 2pjk_A 178AA long hypothetical 30.9 75 0.0026 25.0 5.2 49 62-114 42-93 (178)
453 3lop_A Substrate binding perip 30.9 1.3E+02 0.0045 25.4 7.3 85 48-135 139-229 (364)
454 2v25_A Major cell-binding fact 30.9 1.2E+02 0.0043 23.6 6.7 60 46-112 144-203 (259)
455 3c3k_A Alanine racemase; struc 30.9 1.3E+02 0.0044 24.5 7.0 70 64-136 145-221 (285)
456 3ksx_A Nitrate transport prote 30.8 1E+02 0.0035 25.8 6.5 68 44-116 125-192 (324)
457 2pzm_A Putative nucleotide sug 30.7 49 0.0017 28.0 4.4 39 41-79 11-50 (330)
458 3op4_A 3-oxoacyl-[acyl-carrier 30.7 60 0.0021 26.4 4.8 71 46-123 5-79 (248)
459 1y5e_A Molybdenum cofactor bio 30.6 63 0.0022 25.1 4.6 50 61-114 32-84 (169)
460 2vyc_A Biodegradative arginine 30.5 1.9E+02 0.0066 28.1 9.0 105 51-172 1-128 (755)
461 2f8m_A Ribose 5-phosphate isom 30.4 94 0.0032 26.0 5.9 51 99-155 24-78 (244)
462 1x92_A APC5045, phosphoheptose 30.3 1.9E+02 0.0064 22.3 8.7 102 128-236 45-168 (199)
463 2vk2_A YTFQ, ABC transporter p 30.3 2.2E+02 0.0077 23.2 9.5 45 93-137 179-229 (306)
464 3miz_A Putative transcriptiona 30.3 37 0.0013 28.1 3.5 90 48-137 129-235 (301)
465 3hm2_A Precorrin-6Y C5,15-meth 30.3 1.4E+02 0.0048 22.1 6.6 64 152-215 94-158 (178)
466 4egf_A L-xylulose reductase; s 30.2 56 0.0019 26.9 4.6 87 45-135 15-107 (266)
467 3vtz_A Glucose 1-dehydrogenase 30.2 55 0.0019 27.1 4.5 34 46-79 10-44 (269)
468 3iwh_A Rhodanese-like domain p 30.1 48 0.0017 23.4 3.6 29 50-78 56-85 (103)
469 2ioy_A Periplasmic sugar-bindi 30.0 56 0.0019 26.8 4.5 44 93-136 174-217 (283)
470 3grp_A 3-oxoacyl-(acyl carrier 30.0 61 0.0021 26.8 4.8 71 45-123 22-97 (266)
471 3k31_A Enoyl-(acyl-carrier-pro 29.9 67 0.0023 27.0 5.1 86 46-135 26-117 (296)
472 3ax6_A Phosphoribosylaminoimid 29.9 1.3E+02 0.0044 26.0 7.1 29 51-79 2-30 (380)
473 3gaf_A 7-alpha-hydroxysteroid 29.9 53 0.0018 26.9 4.3 75 45-123 7-85 (256)
474 4ehi_A Bifunctional purine bio 29.8 2.3E+02 0.0078 26.5 8.8 125 109-249 32-179 (534)
475 3td9_A Branched chain amino ac 29.8 1.3E+02 0.0046 25.3 7.1 82 48-134 147-236 (366)
476 3get_A Histidinol-phosphate am 29.4 66 0.0023 27.3 5.0 59 175-237 103-162 (365)
477 3oml_A GH14720P, peroxisomal m 29.3 60 0.0021 30.8 5.1 77 46-122 15-97 (613)
478 1l3i_A Precorrin-6Y methyltran 29.2 1.8E+02 0.006 21.6 7.6 94 110-210 64-160 (192)
479 3cz5_A Two-component response 29.1 1.6E+02 0.0054 21.1 9.9 111 48-175 3-123 (153)
480 3q2o_A Phosphoribosylaminoimid 29.1 1.2E+02 0.0041 26.5 6.8 124 48-212 12-135 (389)
481 2fvy_A D-galactose-binding per 29.1 1.1E+02 0.0038 25.0 6.3 71 64-136 161-237 (309)
482 2pnf_A 3-oxoacyl-[acyl-carrier 29.0 63 0.0022 25.8 4.6 34 46-79 3-37 (248)
483 2yx6_A Hypothetical protein PH 28.9 61 0.0021 23.4 4.1 51 116-173 54-104 (121)
484 3un6_A Hypothetical protein sa 28.6 2.1E+02 0.007 24.1 8.1 66 44-114 147-214 (341)
485 3bbl_A Regulatory protein of L 28.6 1.3E+02 0.0044 24.5 6.6 75 64-138 146-227 (287)
486 3nra_A Aspartate aminotransfer 28.5 2.7E+02 0.0093 23.6 9.6 84 164-250 112-210 (407)
487 3cs3_A Sugar-binding transcrip 28.5 64 0.0022 26.2 4.6 71 64-137 139-215 (277)
488 2bgk_A Rhizome secoisolaricire 28.4 69 0.0023 26.1 4.8 34 46-79 12-46 (278)
489 2jah_A Clavulanic acid dehydro 28.3 67 0.0023 26.1 4.6 72 47-123 4-80 (247)
490 1xdw_A NAD+-dependent (R)-2-hy 28.3 2.8E+02 0.0097 23.8 12.1 167 51-238 1-208 (331)
491 3imf_A Short chain dehydrogena 28.3 60 0.0021 26.5 4.4 85 46-135 2-92 (257)
492 3op7_A Aminotransferase class 28.2 2.7E+02 0.0091 23.4 9.4 74 175-251 102-186 (375)
493 1o13_A Probable NIFB protein; 28.2 61 0.0021 24.3 4.0 49 118-173 69-117 (136)
494 2z1n_A Dehydrogenase; reductas 28.2 73 0.0025 25.9 4.9 73 47-123 4-82 (260)
495 1qkk_A DCTD, C4-dicarboxylate 28.2 1.7E+02 0.0057 21.0 11.0 107 50-174 3-118 (155)
496 3ijr_A Oxidoreductase, short c 28.1 71 0.0024 26.8 4.9 74 46-123 43-121 (291)
497 2h0a_A TTHA0807, transcription 28.1 90 0.0031 25.1 5.5 74 65-138 141-219 (276)
498 3u7q_B Nitrogenase molybdenum- 28.1 53 0.0018 30.7 4.4 140 63-209 238-395 (523)
499 3soz_A ORF 245 protein, cytopl 28.0 31 0.0011 29.0 2.5 70 59-135 32-118 (248)
500 2c2x_A Methylenetetrahydrofola 28.0 1.4E+02 0.0049 25.5 6.7 146 66-237 54-212 (281)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-41 Score=296.61 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=185.0
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~ 125 (263)
.||.|++||+|||..+.+++.+.|+++|++++.+|+|++++.++...++..+..+..||||||||+|+|++|++.+...+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 58999999999999889999999999999999999999999887667788887788999999999999999999988765
Q ss_pred CC--CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc--c-CCCCCcEEEEEcCCCCchhHHHHHHhC
Q 024727 126 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (263)
Q Consensus 126 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--~-~~~~~~~vL~~~g~~~~~~L~~~L~~~ 200 (263)
.+ +++++|||++|+++|+++ |+.++++|+.+++++|++.+. + ...++++||++||+.++++|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 43 589999999999999999 999999998999999998886 3 244689999999999999999999999
Q ss_pred CCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhcccc--CCCCceEEEECC
Q 024727 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT--EQWSNSVACIAG 263 (263)
Q Consensus 201 G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~--~~~~~~i~~IGp 263 (263)
|++|.++++|++.+.+...+.+.+.+ +.+|+|+||||++++ +|++++++. .+.+++++||||
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~l~~~~~~aIG~ 221 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQ-NLYQLAAADWPEIGRLPLFVPSP 221 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHH-HHHHHHGGGHHHHTTSCEEESSH
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHhhHHHHHHhCCeEEEECH
Confidence 99999999999999887655554444 589999999999999 999998753 145799999996
No 2
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=2.5e-41 Score=300.79 Aligned_cols=214 Identities=16% Similarity=0.081 Sum_probs=173.8
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE
Q 024727 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI 106 (263)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~d~I 106 (263)
-+++++|||. +||.|++||+||+.. .+.+.+.|+++|++++.+|+|++++. +.+.++..++++ +.||||
T Consensus 19 ~~~~~~w~e~--------~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~d~l 88 (286)
T 3d8t_A 19 DSTENLYFQG--------IDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGVDLF 88 (286)
T ss_dssp ----------------------CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCCSEE
T ss_pred cCccCccccC--------CCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCCCEE
Confidence 3679999999 999999999999987 89999999999999999999999987 555677777666 479999
Q ss_pred EEeCHHHHHHHHHHHHHcCCC------CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCc-
Q 024727 107 IITSPEAGSVFLEAWKEAGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC- 179 (263)
Q Consensus 107 iFTS~~aV~~~~~~l~~~~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~- 179 (263)
||||+|+|++|++.+.+.+.+ +++++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+
T Consensus 89 ifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~ 157 (286)
T 3d8t_A 89 LATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRG 157 (286)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----CCS
T ss_pred EEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----CCc
Confidence 999999999999998876544 689999999999999999 99999999 8999999988865 68
Q ss_pred EEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhcccc-----C
Q 024727 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT-----E 252 (263)
Q Consensus 180 ~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~-----~ 252 (263)
+||++||+.+++.|.+.|+++|++|.++++|++.+.....+++.+.+ +.+|+|+|||+++|+ +|++.+++. .
T Consensus 158 ~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~-~~~~~~~~~~~~~~~ 236 (286)
T 3d8t_A 158 VAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVE-FLFEGAKDPKALREA 236 (286)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHH-HHHHHCSCHHHHHHH
T ss_pred eEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHH-HHHHHHHhccchhhH
Confidence 99999999999999999999999999999999985332223343434 589999999999999 999988642 1
Q ss_pred CC-CceEEEECC
Q 024727 253 QW-SNSVACIAG 263 (263)
Q Consensus 253 ~~-~~~i~~IGp 263 (263)
+. +++++||||
T Consensus 237 l~~~~~i~aIG~ 248 (286)
T 3d8t_A 237 LNTRVKALAVGR 248 (286)
T ss_dssp HTTTSEEEEESH
T ss_pred hhcCCEEEEECH
Confidence 34 789999996
No 3
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=4.6e-41 Score=296.66 Aligned_cols=211 Identities=19% Similarity=0.189 Sum_probs=178.1
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~ 125 (263)
..+.|++||||||..+.+++.+.|+++|++++.+|++++++.++...++..+..+..||||||||+|||++|++.+...+
T Consensus 10 ~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~ 89 (269)
T 3re1_A 10 MDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVW 89 (269)
T ss_dssp ---CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHC
T ss_pred cccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999999999999999999887667778887788999999999999999999998765
Q ss_pred CC--CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc--c-CCCCCcEEEEEcCCCCchhHHHHHHhC
Q 024727 126 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (263)
Q Consensus 126 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--~-~~~~~~~vL~~~g~~~~~~L~~~L~~~ 200 (263)
.+ +++++|||++|+++|+++ |+.++++|+.+++++|++.+. + ...++++||++||+.++++|.+.|+++
T Consensus 90 ~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~ 163 (269)
T 3re1_A 90 PQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRER 163 (269)
T ss_dssp SSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHC
Confidence 43 589999999999999999 999999988899999998876 3 234689999999999999999999999
Q ss_pred CCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhcccc--CCCCceEEEECC
Q 024727 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT--EQWSNSVACIAG 263 (263)
Q Consensus 201 G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~--~~~~~~i~~IGp 263 (263)
|++|.++++|++.+.+...+.+.+.+ +.+|+|+||||++++ +|++.+++. .+.+++++||||
T Consensus 164 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~l~~~~~~aIG~ 229 (269)
T 3re1_A 164 GVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFE-HLLQLAGDSWPDLAGLPLFVPSP 229 (269)
T ss_dssp TCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHT-TTHHHHGGGHHHHTTSCEEESSH
T ss_pred CCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHH-HHHHHhhHHHHHHhCCeEEEECH
Confidence 99999999999999876554443333 589999999999999 999988753 246899999996
No 4
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=1.3e-39 Score=282.35 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=175.8
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~ 129 (263)
||+||+|||..+.+++.+.|+++|++++.+|+|++++.++.+ ..+..+++||||||||+|+|++|++.+.. .+.+.
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~---~~~~~l~~~d~viftS~~aV~~~~~~l~~-~l~~~ 76 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQ---AQLDELSRADILIFISTSAVSFATPWLKD-QWPKA 76 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCH---HHHHHHTTCSEEEECSHHHHHHHHHHHTT-CCCSS
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHH---HHHHHhcCCCEEEEECHHHHHHHHHHHHh-hCcCC
Confidence 799999999999999999999999999999999999987543 33344578999999999999999998763 35679
Q ss_pred EEEEeChhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEe
Q 024727 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (263)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~ 208 (263)
+++|||++|+++|+++ |+.++++|+++ ++++|++.+......|++||++||+.++++|.+.|+++|++|++++
T Consensus 77 ~~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~ 150 (240)
T 3mw8_A 77 TYYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLE 150 (240)
T ss_dssp EEEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999 99999999987 9999998776555578999999999999999999999999999999
Q ss_pred eeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEECC
Q 024727 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIAG 263 (263)
Q Consensus 209 vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IGp 263 (263)
+|++.+.+...+.+.+.+ +++|+|+||||++++ +|++++++.. +.+.+++||||
T Consensus 151 ~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~~l~~~~~~aiG~ 209 (240)
T 3mw8_A 151 VYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLE-NLINLVPKDSFAWLRDCHIIVPSA 209 (240)
T ss_dssp EEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHH-HHHHHSCGGGHHHHHHSEEEESSH
T ss_pred EEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHcchHHHHHHhCCCEEEECH
Confidence 999999887766555444 489999999999999 9999987542 24789999996
No 5
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=7.3e-39 Score=284.74 Aligned_cols=213 Identities=16% Similarity=0.199 Sum_probs=176.5
Q ss_pred cccCCCCCCCeEEEeCCC-CCh---HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 024727 42 TSASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (263)
Q Consensus 42 ~~~~~~l~g~~ILitr~~-~~~---~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~ 117 (263)
+|..+++.|++|++||+. .+. +++.+.|+++|++++.+|++++++.+ .+.+...+..+..||||||||+|||++|
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~ 91 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAA 91 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHH
Confidence 567899999999999997 677 99999999999999999999999864 3556677766788999999999999999
Q ss_pred HHHHHHcCC------------CCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEc
Q 024727 118 LEAWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA 185 (263)
Q Consensus 118 ~~~l~~~~~------------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~ 185 (263)
++.+.+.+. .+.+++|||++|+++|+++ |+.+ +.|+.+++++|++.+......+++||++|
T Consensus 92 ~~~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~r 164 (286)
T 1jr2_A 92 ELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPC 164 (286)
T ss_dssp HHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEE
T ss_pred HHHHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEEC
Confidence 998876542 3689999999999999999 9998 78889999999999987655689999999
Q ss_pred CCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh---CCCCEEEEeCHHHHHHHHHHhcccc---CCCCceEE
Q 024727 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDT---EQWSNSVA 259 (263)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~---~~~~~~i~ 259 (263)
|+.+++.|.+.|+++|++|.++++|++.+.+...+.+.+.+ +.+|+|+||||++|+ +|++.+++. .+.+++++
T Consensus 165 g~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~-~f~~~~~~~~~~~l~~~~i~ 243 (286)
T 1jr2_A 165 GNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLT-YSLKHIQELSGDNIDQIKFA 243 (286)
T ss_dssp SCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHH-HHHHHHHHHHGGGGGGSEEE
T ss_pred ChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHH-HHHHHHhhhccccccCCEEE
Confidence 99999999999999999999999999998765443343333 579999999999999 999987641 14578999
Q ss_pred EECC
Q 024727 260 CIAG 263 (263)
Q Consensus 260 ~IGp 263 (263)
||||
T Consensus 244 aIG~ 247 (286)
T 1jr2_A 244 AIGP 247 (286)
T ss_dssp ESSH
T ss_pred EECH
Confidence 9996
No 6
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=6.6e-39 Score=280.86 Aligned_cols=204 Identities=17% Similarity=0.105 Sum_probs=173.9
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeCHHHHHHHHHHHHHc
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKEA 124 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV~~~~~~l~~~ 124 (263)
+||.|++||+||+.. .+.+.+.|+++|++++.+|+|++++. +.+.++..++++ +.||||||||+|+|++|++.+.+.
T Consensus 4 ~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~ 81 (261)
T 1wcw_A 4 LEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKAL 81 (261)
T ss_dssp ----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHh
Confidence 899999999999996 89999999999999999999999998 666677777666 579999999999999999998876
Q ss_pred CCC------CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCc-EEEEEcCCCCchhHHHHH
Q 024727 125 GTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEGL 197 (263)
Q Consensus 125 ~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~-~vL~~~g~~~~~~L~~~L 197 (263)
+.+ +++++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+ +||++||+.+++.|.+.|
T Consensus 82 ~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~L 150 (261)
T 1wcw_A 82 GLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENAL 150 (261)
T ss_dssp TCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHHH
T ss_pred CchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHHH
Confidence 543 589999999999999999 99999999 9999999988865 68 999999999999999999
Q ss_pred HhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhccccC-----CC-CceEEEECC
Q 024727 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE-----QW-SNSVACIAG 263 (263)
Q Consensus 198 ~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~-----~~-~~~i~~IGp 263 (263)
+++|++|.++++|++.+.....+++.+.+ +.+|+|+|||+++|+ +|++.+++.. +. +++++||||
T Consensus 151 ~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~-~~~~~~~~~~~~~~~l~~~~~~~aIG~ 223 (261)
T 1wcw_A 151 AERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVE-FLFEGAKDPKALREALNTRVKALAVGR 223 (261)
T ss_dssp HHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHH-HHHHHCSCHHHHHHHHHHTSEEEEESH
T ss_pred HHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHH-HHHHHHhhccchhHHhhcCCEEEEECH
Confidence 99999999999999985332223333333 589999999999999 9999886421 24 789999996
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.97 E-value=1.6e-31 Score=230.38 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=139.2
Q ss_pred cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC----CCCcEEEEeChhHHHHHHHhhhhcC
Q 024727 75 DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSK 150 (263)
Q Consensus 75 ~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~----~~~~~i~aVG~~Ta~~L~~~~~~~~ 150 (263)
.++.+|++++++.+.. .++++||||||||+|||++|++.+.+.+ +.+++++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~-------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~----- 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE-------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH----- 84 (229)
T ss_dssp TSEEECCEEEEECCCC-------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT-----
T ss_pred CceeeceeeEEecccc-------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc-----
Confidence 6889999999998652 2578999999999999999998765322 24789999999999999999
Q ss_pred CCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CC
Q 024727 151 CSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS 228 (263)
Q Consensus 151 ~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~ 228 (263)
|+.++++|+++++++|++.|.+.. .|++||++||+.++++|.+.|+++|++|.++++|++.+.+...+ ..+.+ +.
T Consensus 85 -G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-~~~~l~~~~ 161 (229)
T 3p9z_A 85 -HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLS-EQNALKPKE 161 (229)
T ss_dssp -TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHH-HHHHHSCCT
T ss_pred -CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHH-HHHHHhcCC
Confidence 999999999999999998887643 57899999999999999999999999999999999999886543 33334 58
Q ss_pred CCEEEEeCHHHHHHHHHHhccccCCCCceEEEECC
Q 024727 229 IPVVAVASPSAVRSSWVNLISDTEQWSNSVACIAG 263 (263)
Q Consensus 229 ~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IGp 263 (263)
+|+|+||||++++ +|++.++. ..+++++||||
T Consensus 162 ~d~v~ftS~s~v~-~~~~~~~~--~~~~~~~aIG~ 193 (229)
T 3p9z_A 162 KSILIFTAISHAK-AFLHYFEF--LENYTAISIGN 193 (229)
T ss_dssp TCEEEECSHHHHH-HHHHHSCC--CTTCEEEESSH
T ss_pred CeEEEEECHHHHH-HHHHHhCc--ccCCEEEEECH
Confidence 9999999999999 99998852 35789999996
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.72 E-value=3.4e-17 Score=140.63 Aligned_cols=118 Identities=16% Similarity=0.076 Sum_probs=102.5
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~ 127 (263)
+.|++||++|+..+++.+.+.|+++|++|..+++|++++.++.....+.+ ..+.+|+|+|||+++|++|++.+. ...
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~--~~~ 184 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNAL-KPKEKSILIFTAISHAKAFLHYFE--FLE 184 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHH-SCCTTCEEEECSHHHHHHHHHHSC--CCT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHH-hcCCCeEEEEECHHHHHHHHHHhC--ccc
Confidence 46899999999999999999999999999999999999987544444445 457899999999999999998763 245
Q ss_pred CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
+.+++|||+.|+++|+++ |+.+ .+|++++.++|++.+.+..
T Consensus 185 ~~~~~aIG~~Ta~~l~~~------G~~v-~va~~~~~e~ll~~l~~l~ 225 (229)
T 3p9z_A 185 NYTAISIGNTTALYLQEQ------GIPS-YIAKKPSLEACLELALSLR 225 (229)
T ss_dssp TCEEEESSHHHHHHHHHT------TCCE-EECSSSSHHHHHHHHHHTC
T ss_pred CCEEEEECHHHHHHHHHc------CCCc-eeCCCCCHHHHHHHHHHHh
Confidence 789999999999999999 9997 4799999999999998753
No 9
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.72 E-value=2.2e-17 Score=146.15 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=105.5
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc--
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~-- 124 (263)
..|++||++|+...++.+.+.|++.|++|..+|+|++++.++. +.+...+...+.+|+|+|||+++|++|++.+.+.
T Consensus 155 ~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~ 234 (286)
T 1jr2_A 155 SSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSG 234 (286)
T ss_dssp CCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHG
T ss_pred cCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhcc
Confidence 4589999999998899999999999999999999999987653 3454555444689999999999999999988752
Q ss_pred -CCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
.+.+++++|||+.|+++|+++ |+.++++|+.++.++|++.|.+..
T Consensus 235 ~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 235 DNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred ccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 235789999999999999999 999988999999999999987754
No 10
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.71 E-value=2.7e-17 Score=144.45 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=106.3
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 024727 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (263)
Q Consensus 47 ~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~- 124 (263)
...|++||++|+..+++.+.+.|++.|++|..+|+|++++.+. .+.+...+. .+.+|+|+|||+++|++|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~-~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVE-VERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHH-HTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHH-cCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998753 334444442 3689999999999999999987653
Q ss_pred -CCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCC
Q 024727 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK 176 (263)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~ 176 (263)
.+.+++++|||+.|+++++++ |+.++++|+.++.++|++.|.+...
T Consensus 217 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 217 PDLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp HHHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSCC
T ss_pred HHHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHhc
Confidence 235789999999999999999 9999889999999999999988763
No 11
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.70 E-value=7.1e-17 Score=140.41 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=104.6
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 024727 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (263)
Q Consensus 47 ~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~- 124 (263)
...|++||++|+...++.+.+.|+++|++|..+++|++++.+. .+.+...+ ..+.+|+|+|||+++|++|++.+.+.
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 208 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARV-RAERLNGLVVSSGQGLQNLYQLAAADW 208 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHH-HHTTCCEEECCSHHHHHHHHHHHGGGH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998764 34455555 34689999999999999999987653
Q ss_pred -CCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.+.+++++|||+.|+++++++ |+.++++|+.++.++|++.|.+
T Consensus 209 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 209 PEIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 235789999999999999999 9999889999999999998865
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.67 E-value=1.1e-16 Score=139.59 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=98.7
Q ss_pred CC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC--
Q 024727 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG-- 125 (263)
Q Consensus 50 g~-~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~-- 125 (263)
|+ +||++|+...++.+.+.|++.|++|..+|+|++++..+ .+++...+ ..+.+|+|+|||+++|++|++.+.+.+
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 208 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAL-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 208 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHH-HHTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHhhccch
Confidence 88 99999999999999999999999999999999986432 12233333 236799999999999999998764321
Q ss_pred ---CC-CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 126 ---TP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 126 ---~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+. +.+++|||+.|+++|+++ |+.++++|+.++.++|++.|.+.
T Consensus 209 ~~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 209 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred hHHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 23 689999999999999999 99998889999999999988754
No 13
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.67 E-value=2.1e-16 Score=139.95 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=99.4
Q ss_pred CC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---
Q 024727 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (263)
Q Consensus 50 g~-~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~--- 124 (263)
|+ +||++|+...++.+.+.|++.|++|..+|+|++++..+ .+++...+ ..+.+|+|+|||+++|++|++.+.+.
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~~~v~~~~~~~~~~~~~ 233 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAV-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 233 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHH-HTTCCSEEEESSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHHhccch
Confidence 88 99999999999999999999999999999999986432 12333334 24689999999999999999876432
Q ss_pred --CCC-CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 125 --~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
.+. +++++|||+.|+++|+++ |+.++++|+.++.++|++.|.+.
T Consensus 234 ~~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 234 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hhHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 124 689999999999999999 99998889999999999988764
No 14
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.66 E-value=1.7e-16 Score=136.85 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=101.8
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 024727 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (263)
Q Consensus 47 ~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~ 125 (263)
.+.|++||++|+...++.+.+.|+++|++|..+++|++++.+. .+.+...+. .+.+|+|+|||+++|++|++.+.+..
T Consensus 117 ~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~-~~~~d~v~ftS~s~v~~~~~~~~~~~ 195 (240)
T 3mw8_A 117 QVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQ-SFGIDTIVVTSGEVLENLINLVPKDS 195 (240)
T ss_dssp CCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHH-HHTCCEEECCSHHHHHHHHHHSCGGG
T ss_pred cCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHH-hCCCCEEEEcCHHHHHHHHHHcchHH
Confidence 4679999999999999999999999999999999999998764 344444442 25799999999999999999875432
Q ss_pred ---CCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 126 ---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
+.+.+++|||+.|+++++++ |+.++++|+.++.++|++.|.
T Consensus 196 ~~~l~~~~~~aiG~~ta~~l~~~------G~~~~~va~~p~~~~ll~al~ 239 (240)
T 3mw8_A 196 FAWLRDCHIIVPSARVETQARKK------GLRRVTNAGAANQAAVLDALG 239 (240)
T ss_dssp HHHHHHSEEEESSHHHHHHHHHT------TCCCEEECSSSSHHHHHHHHT
T ss_pred HHHHhCCCEEEECHHHHHHHHHc------CCCceEeCCCCCHHHHHHHhh
Confidence 23689999999999999999 999989999999999998774
No 15
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.40 E-value=0.038 Score=47.09 Aligned_cols=182 Identities=9% Similarity=-0.010 Sum_probs=103.3
Q ss_pred HHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhH
Q 024727 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 64 ~l~~~L~~~-G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~T 138 (263)
.+.+.++++ |+.+......... .+.+...+.++. ...+|.||+.... +....++.+.+. +++++++|...
T Consensus 30 gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 104 (304)
T 3gbv_A 30 GIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSCC
T ss_pred HHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 355666777 8888765543221 222222222222 3689999998754 445555555554 57899998543
Q ss_pred HHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEc----CCCC-------chhHHHHHHhCCCeeeE
Q 024727 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPA----SAKA-------SNEIEEGLSNRGFEVVR 206 (263)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~----g~~~-------~~~L~~~L~~~G~~v~~ 206 (263)
. .. .++.. +..+.+ .+..+++.|.+..-.+++|+++. |... ..-+.+.|++.|..+..
T Consensus 105 ~----~~-----~~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~ 174 (304)
T 3gbv_A 105 K----DA-----PPLAF-FGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNI 174 (304)
T ss_dssp T----TS-----CCSEE-EECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred C----CC-----CceEE-EecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEE
Confidence 1 11 01221 233332 34555566666543348999998 4332 23466778888888777
Q ss_pred EeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 207 LNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 207 ~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
..++..........+ +.+.+ .++++|+..+-. +. ..++.+.+....++.|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~-g~~~al~~~g~~di~vig~d 232 (304)
T 3gbv_A 175 LELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VY-IIGEYLQQRRKSDFSLIGYD 232 (304)
T ss_dssp EEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-TH-HHHHHHHHTTCCSCEEEEES
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hH-HHHHHHHHcCCCCcEEEEeC
Confidence 766554444443333 22222 478999998877 66 56665554433567777664
No 16
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.23 E-value=0.015 Score=49.63 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=101.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (263)
.+.+.++++|+++.....-.-. ....++...+. ...+|.||+.+...-...++.+.+. +++++++|... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~----~ 100 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYILE-TGSADGVIISKIEPNDPRVRFMTER---NMPFVTHGRSD----M 100 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHHH-HTCCSEEEEESCCTTCHHHHHHHHT---TCCEEEESCCC----S
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHHH-cCCccEEEEecCCCCcHHHHHHhhC---CCCEEEECCcC----C
Confidence 3455666789887765432111 11122333332 2689999998655433444555543 67899998642 1
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccccC
Q 024727 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++.....
T Consensus 101 ~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~ 171 (288)
T 3gv0_A 101 GI------EHAF-HDFDNEAYAYEAVERLAQC--GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETP 171 (288)
T ss_dssp SC------CCEE-EEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSC
T ss_pred CC------CCcE-EEeCcHHHHHHHHHHHHHC--CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccc
Confidence 12 3332 22222 2345556666664 34799999987643 3356778889987755433332221
Q ss_pred CCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 216 HHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 216 ~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.....+ +.+.+ ..+|+|+..+-..+. .+++.+.+.. ..++.|++++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~d 224 (288)
T 3gv0_A 172 LEKIRDFGQRLMQSSDRPDGIVSISGSSTI-ALVAGFEAAGVKIGEDVDIVSKQ 224 (288)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESCHHHHH-HHHHHHHTTTCCTTTSCEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEec
Confidence 111112 23323 368999999988887 7777776543 2467777664
No 17
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.18 E-value=0.016 Score=49.74 Aligned_cols=178 Identities=10% Similarity=0.071 Sum_probs=101.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (263)
.+.+.++++|+++.....-. ......+.+.+. ...+|.||+.+...-...++.+.+. +++++++|... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~-~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~----~ 99 (294)
T 3qk7_A 31 WIGIELGKRGLDLLLIPDEP---GEKYQSLIHLVE-TRRVDALIVAHTQPEDFRLQYLQKQ---NFPFLALGRSH----L 99 (294)
T ss_dssp HHHHHHHHTTCEEEEEEECT---TCCCHHHHHHHH-HTCCSEEEECSCCSSCHHHHHHHHT---TCCEEEESCCC----C
T ss_pred HHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHHH-cCCCCEEEEeCCCCChHHHHHHHhC---CCCEEEECCCC----C
Confidence 45567778899888765421 122233333342 2579999998764333344444443 67899998642 1
Q ss_pred HhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccccC
Q 024727 144 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++.....
T Consensus 100 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 170 (294)
T 3qk7_A 100 PK------PYAW-FDFDNHAGASLAVKRLLEL--GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPT 170 (294)
T ss_dssp SS------CCEE-EEECHHHHHHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSS
T ss_pred CC------CCCE-EEcChHHHHHHHHHHHHHC--CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCC
Confidence 22 4432 223322 334455666664 34789999987643 3356678888887654333332221
Q ss_pred CCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 216 HHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 216 ~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.....+ +.+.+ ..+|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 171 ~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 171 RPGGYLAASRLLALEVPPTAIITDCNMLGD-GVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHHHHHHHSSSCCSEEEESSHHHHH-HHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEeec
Confidence 111111 22222 478999999987777 6776665543 2467777664
No 18
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.11 E-value=0.044 Score=46.48 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=102.9
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 024727 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~~~ 118 (263)
.++|.+.-+... ...+.+.++++|+++..... ..+.+...+.++. ...+|.||+.... .....+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 455655544322 23455667788988776532 1222211122221 2579999988553 556666
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------
Q 024727 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------- 190 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~------- 190 (263)
+.+.+. +++++++|... .. ++.. +..+. ..+..+++.|.+.....++|+++.|....
T Consensus 80 ~~~~~~---~iPvV~~~~~~-----~~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3l49_A 80 QKINDA---GIPLFTVDTAT-----PH------AINN-TTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRY 144 (291)
T ss_dssp HHHHHT---TCCEEEESCCC-----TT------CSEE-EEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHH
T ss_pred HHHHHC---CCcEEEecCCC-----CC------cCce-EecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHH
Confidence 666554 67899998653 12 3332 22332 23455566666632245799999887543
Q ss_pred hhHHHHHHhC-CCee-eEEeeeccccCCCChHH-HHHHh---C---CCCEEEEeCHHHHHHHHHHhccccCCCCceEEEE
Q 024727 191 NEIEEGLSNR-GFEV-VRLNTYTTEPVHHVDQT-VLKQA---L---SIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI 261 (263)
Q Consensus 191 ~~L~~~L~~~-G~~v-~~~~vY~~~~~~~~~~~-~~~~l---~---~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~I 261 (263)
.-+.+.|++. |+++ ....++..........+ +.+.+ . ++|+|+..+-..+. ..++.+.+....++.|+++
T Consensus 145 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~di~vvg~ 223 (291)
T 3l49_A 145 DQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMI-GATQALQAAGRTDIRTYGV 223 (291)
T ss_dssp HHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHH-HHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHH-HHHHHHHHcCCCCeEEEEe
Confidence 2345667777 5552 21111111100001111 22222 3 68999998888877 7777776543336666665
Q ss_pred C
Q 024727 262 A 262 (263)
Q Consensus 262 G 262 (263)
+
T Consensus 224 d 224 (291)
T 3l49_A 224 D 224 (291)
T ss_dssp E
T ss_pred c
Confidence 4
No 19
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.89 E-value=0.018 Score=49.46 Aligned_cols=194 Identities=8% Similarity=-0.026 Sum_probs=106.8
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 024727 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~~~-------~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~~~ 118 (263)
+++|.+.-+.... ..+.+.++++|+++.... ....+.+...+.++. ...+|.||+.+.. .....+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 4566555443322 345556678898887531 111122211222221 2579999987543 334455
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCC-CceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc------
Q 024727 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------ 190 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~------ 190 (263)
+.+.+. ++++++++.... .. + +.. +..+. ..+..+++.|.+.....++|+++.|....
T Consensus 80 ~~~~~~---~iPvV~~~~~~~----~~------~~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~ 145 (305)
T 3g1w_A 80 NKAVDA---GIPIVLFDSGAP----DS------HAHSF-LGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERT 145 (305)
T ss_dssp HHHHHT---TCCEEEESSCCT----TS------CCSCE-EECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHH
T ss_pred HHHHHC---CCcEEEECCCCC----CC------ceeEE-ECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHH
Confidence 555553 678999986432 11 2 222 23332 23445556666653345789999987532
Q ss_pred hhHHHHHHhCCCeeeEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEEC
Q 024727 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIA 262 (263)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~IG 262 (263)
.-+.+.|++.|..+....++..........+ +.+.+ .++|+|+..+-..+. ..++.+.+... .++.|++++
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~di~vig~d 221 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGV-GVGDAVRLESRAGEIQIISFD 221 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH-HHHHHHHHTTCTTTSEEEEES
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchh-hHHHHHHhcCCCCCeEEEEeC
Confidence 3366778888888877666554332221112 22222 378999998888777 77776655433 467777765
No 20
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.74 E-value=0.064 Score=45.61 Aligned_cols=177 Identities=8% Similarity=-0.010 Sum_probs=99.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.....- .+.+...+.++. ...+|.||+.+.......++. ....+++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~---~~~~~iPvV~~~~~~~-- 98 (291)
T 3egc_A 29 GVESEARHKGYSVLLANTA-----EDIVREREAVGQFFERRVDGLILAPSEGEHDYLRT---ELPKTFPIVAVNRELR-- 98 (291)
T ss_dssp HHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHH---SSCTTSCEEEESSCCC--
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHH---hhccCCCEEEEecccC--
Confidence 4556677889887754321 122211122221 257999999887653333332 3334789999986542
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.|.... .-+.+.|++.|..+....+....
T Consensus 99 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (291)
T 3egc_A 99 --IP------GCGA-VLSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG 167 (291)
T ss_dssp --CT------TCEE-EEECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 23 4432 22332 2344555666664 35789999988642 33566788888876543332222
Q ss_pred cCCCCh-HHHHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVD-QTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~-~~~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
...... +.+.+.+ .++|+|+..+-..+. .+++.+.+.. ..++.|++++
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGADRPTALLTSSHRITE-GAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp ----CCHHHHHHHHTC-CCCSEEEESSHHHHH-HHHHHHHHHTCCBTTTBEEEEES
T ss_pred CChhHHHHHHHHHHhCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEec
Confidence 222222 2233333 478999999988887 7777665543 2467777765
No 21
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=95.70 E-value=0.052 Score=45.62 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.+...-+..++.+.+. +++++++|....
T Consensus 24 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 93 (275)
T 3d8u_A 24 SFQQALNKAGYQLLLGY---S--DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS---NTPVLEIAELSS-- 93 (275)
T ss_dssp HHHHHHHHTSCEECCEE---C--TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH---TCCEEEESSSCS--
T ss_pred HHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEeeccC--
Confidence 44566778898765432 1 1222211112211 3678999887643223344444443 578888886421
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++...
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 162 (275)
T 3d8u_A 94 --KA------SYLN-IGVDHFEVGKACTRHLIEQ--GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEA 162 (275)
T ss_dssp --SS------SSEE-ECBCHHHHHHHHHHHHHTT--TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCC
Confidence 12 3322 223322 234455666654 34789999887542 33567788899876554444221
Q ss_pred cCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.......+ +.+.+ ..+|+|+.++-..+. .+++.+.+.. ..++.|++++
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 217 (275)
T 3d8u_A 163 PSSQLGAEGLAKLLLRDSSLNALVCSHEEIAI-GALFECHRRVLKVPTDIAIICLE 217 (275)
T ss_dssp CCHHHHHHHHHHHHTTCTTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEESS
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEecC
Confidence 11111111 22223 258999999888777 7776665443 2456676654
No 22
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=95.55 E-value=0.065 Score=45.39 Aligned_cols=178 Identities=10% Similarity=-0.014 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+...+.++. ...+|.||+.+...-...++.+.+. .++++++++....
T Consensus 42 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~-- 112 (296)
T 3brq_A 42 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA--HSQPIMVLNRRLR-- 112 (296)
T ss_dssp HHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHT--CSSCEEEESCCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCCEEEEccccC--
Confidence 445666788987654321 1222211122221 2579999987643222333444441 2678999885421
Q ss_pred HHHhhhhcCCCCceeecCCCCC-HHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~t-~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. ++.. +..+.+. +..+++.|.+. ..++|.++.|.... .-+.+.|++.|.++....++...
T Consensus 113 --~~------~~~~-V~~d~~~~~~~a~~~l~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 181 (296)
T 3brq_A 113 --KN------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGK 181 (296)
T ss_dssp --SS------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCC
T ss_pred --CC------CCCE-EEEchHHHHHHHHHHHHHC--CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 11 2221 2223222 34455666664 34789999987542 33567788888876543333321
Q ss_pred cCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.......+ +.+.+ .++|+|+..+...+. .+++.+.+.. ..++.|++++
T Consensus 182 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 182 WTPASGAEGVEMLLERGAKFSALVASNDDMAI-GAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp SSHHHHHHHHHHHHTC--CCSEEEESSHHHHH-HHHHHHHHHTCCTTTTCEEEEES
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCceEEEeec
Confidence 11111112 22223 368999999988777 7776665432 2466677654
No 23
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=95.47 E-value=0.068 Score=45.46 Aligned_cols=179 Identities=7% Similarity=-0.009 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (263)
.+.+.++++|+++.....-. .+....+.++..+ ...+|.||+.+...-...++.+.+. +++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~---- 98 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPFSE-DRSQIDIYRDLIR--SGNVDGFVLSSINYNDPRVQFLLKQ---KFPFVAFGRSNP---- 98 (287)
T ss_dssp HHHHHHHHTTCEEEECCCCS-STTCCHHHHHHHH--TTCCSEEEECSCCTTCHHHHHHHHT---TCCEEEESCCST----
T ss_pred HHHHHHHHcCCEEEEEeCCC-chHHHHHHHHHHH--cCCCCEEEEeecCCCcHHHHHHHhc---CCCEEEECCcCC----
Confidence 45566778898876543211 0100112233332 3679999997643212334444443 678999986432
Q ss_pred HhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccccC
Q 024727 144 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|+.+....++.....
T Consensus 99 ~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~ 169 (287)
T 3bbl_A 99 DW------DFAW-VDIDGTAGTRQAVEYLIGR--GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGT 169 (287)
T ss_dssp TC------CCCE-EEECHHHHHHHHHHHHHHH--TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSS
T ss_pred CC------CCCE-EEeccHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCC
Confidence 12 3332 223322 234455666654 34789999887542 2356778888877643323322111
Q ss_pred CCChHH-HHHHhC-----CCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 216 HHVDQT-VLKQAL-----SIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 216 ~~~~~~-~~~~l~-----~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.....+ +.+.+. ++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~vP~di~vig~d 224 (287)
T 3bbl_A 170 FEVGRAMTLHLLDLSPERRPTAIMTLNDTMAI-GAMAAARERGLTIGTDLAIIGFD 224 (287)
T ss_dssp HHHHHHHHHHHHTSCTTTSCSEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCCEEEEEEC
Confidence 111111 222233 67999998888777 6766665443 2466777664
No 24
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=95.43 E-value=0.079 Score=45.18 Aligned_cols=177 Identities=6% Similarity=-0.004 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++...+ . ..+.+...+.++. ...+|.||+.+...-...++.+.+. +++++++|....
T Consensus 37 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 106 (289)
T 2fep_A 37 GIEDIATMYKYNIILSN---S--DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRS---PVPIVLAASVEE-- 106 (289)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHS---SSCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHhc---CCCEEEEccccC--
Confidence 34566778898876432 1 1222211122221 2579999987642223334444433 678999986432
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCC-C-------chhHHHHHHhCCCeeeEEeeecc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.. . ..-+.+.|++.|+++....++..
T Consensus 107 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 175 (289)
T 2fep_A 107 --QE------ETPS-VAIDYEQAIYDAVKLLVDK--GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEG 175 (289)
T ss_dssp --TC------CSCE-EECCHHHHHHHHHHHHHHT--TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeC
Confidence 12 3332 223322 334555666664 347899999875 3 23466788889987654333332
Q ss_pred ccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
........+ +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 176 DYTYDSGLEALQHLMSLDKKPTAILSATDEMAL-GIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp CSCHHHHHHHHHHHTTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEECCHHHHH-HHHHHHHHcCCCCCCCeEEEEEC
Confidence 111111112 22223 268999999888777 6666665443 2456676654
No 25
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=95.41 E-value=0.087 Score=44.90 Aligned_cols=175 Identities=9% Similarity=0.038 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
.+.+.++++|+++.....-. ..+. +.++..+ ...+|.||+.+...-...++.+.+ +++++++|....
T Consensus 32 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~--~~~vdgiIi~~~~~~~~~~~~~~~----~iPvV~i~~~~~--- 99 (289)
T 3k9c_A 32 QIYAAATRRGYDVMLSAVAP---SRAEKVAVQALM--RERCEAAILLGTRFDTDELGALAD----RVPALVVARASG--- 99 (289)
T ss_dssp HHHHHHHHTTCEEEEEEEBT---TBCHHHHHHHHT--TTTEEEEEEETCCCCHHHHHHHHT----TSCEEEESSCCS---
T ss_pred HHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHH--hCCCCEEEEECCCCCHHHHHHHHc----CCCEEEEcCCCC---
Confidence 45566778898887654321 1111 1222222 367999999875433334444432 688999986432
Q ss_pred HHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc------hhHHHHHHhCCCeeeEEeeeccccC
Q 024727 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++ ....
T Consensus 100 -~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~~~~ 168 (289)
T 3k9c_A 100 -LP------GVGA-VRGDDVAGITLAVDHLTEL--GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVT-GGTT 168 (289)
T ss_dssp -ST------TSEE-EEECHHHHHHHHHHHHHHT--TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEEC-CCSS
T ss_pred -CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEE-CCCC
Confidence 23 4432 223332 334555666664 34789999987542 34667788999887653333 2211
Q ss_pred CCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 216 HHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 216 ~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.....+ +.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 169 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 169 ETEGAEGMHTLLEMPTPPTAVVAFNDRCAT-GVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHHHHHHHHHHTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEEC
Confidence 111112 22223 378999999988777 7777665543 2466776654
No 26
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=95.40 E-value=0.11 Score=44.09 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=100.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
..+.+.++++|+++.....-.. .....++.+.+ ....+|.||+.+...-.. .... ....+++++++|...
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~--~~~~-~~~~~iPvV~~~~~~---- 101 (289)
T 3g85_A 32 RGLQSKLAKQNYNYNVVICPYK--TDCLHLEKGIS-KENSFDAAIIANISNYDL--EYLN-KASLTLPIILFNRLS---- 101 (289)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGS-TTTCCSEEEESSCCHHHH--HHHH-HCCCSSCEEEESCCC----
T ss_pred HHHHHHHHHcCCeEEEEecCCC--chhHHHHHHHH-hccCCCEEEEecCCcccH--HHHH-hccCCCCEEEECCCC----
Confidence 3455667788998876533221 11111111111 135799999987644331 1112 223478999998631
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecccc
Q 024727 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
- ++.. +..+. ..+..+++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++....
T Consensus 102 --~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 170 (289)
T 3g85_A 102 --N------KYSS-VNVDNYKMGEKASLLFAKK--RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAEN 170 (289)
T ss_dssp --S------SSEE-EEECHHHHHHHHHHHHHHT--TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCS
T ss_pred --C------CCCE-EEeCHHHHHHHHHHHHHHc--CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCC
Confidence 2 3332 22332 3345566677664 34789999987543 345677888988765433333222
Q ss_pred CCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 215 VHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 215 ~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
......+ +.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 171 SIHGGVDAAKKLMKLKNTPKALFCNSDSIAL-GVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp SHHHHHHHHHHHTTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCcEEEEcCCHHHH-HHHHHHHHcCCCCCCceEEEEeC
Confidence 1111112 23323 368999999988887 7777766543 2477788765
No 27
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.38 E-value=0.041 Score=46.74 Aligned_cols=178 Identities=7% Similarity=0.006 Sum_probs=99.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.....- .+.+.....++ ....+|.||+.....-...++.+.+. +++++.+|......
T Consensus 34 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~~~ 105 (292)
T 3k4h_A 34 GISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQ---NFPFVLIGKPYDRK 105 (292)
T ss_dssp HHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHT---TCCEEEESCCSSCT
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHHC---CCCEEEECCCCCCC
Confidence 4556677889887654321 11111112221 23689999997655434455555544 67888888643110
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++...
T Consensus 106 ---~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 173 (292)
T 3k4h_A 106 ---D------EITY-VDNDNYTAAREVAEYLISL--GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFD 173 (292)
T ss_dssp ---T------TSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC
T ss_pred ---C------CCCE-EEECcHHHHHHHHHHHHHC--CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecC
Confidence 1 1322 223322 344556666664 34789999987653 33567788888876544333222
Q ss_pred cCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.......+ +.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 174 FSRESGQQAVEELMGLQQPPTAIMATDDLIGL-GVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEcChHHHH-HHHHHHHHhCCCCCCeEEEEEec
Confidence 11111111 22223 378999999988777 7777666543 2467777764
No 28
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=95.26 E-value=0.03 Score=48.04 Aligned_cols=180 Identities=16% Similarity=0.094 Sum_probs=99.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++..... ....+.+ .++..+ ...+|.||+.... +....++.+.+. ++++++++..
T Consensus 24 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~i~~l~--~~~vdgiii~~~~~~~~~~~~~~~~~~---giPvV~~~~~ 95 (297)
T 3rot_A 24 GAKKAAEELKVDLQILAP---PGANDVPKQVQFIESAL--ATYPSGIATTIPSDTAFSKSLQRANKL---NIPVIAVDTR 95 (297)
T ss_dssp HHHHHHHHHTCEEEEECC---SSSCCHHHHHHHHHHHH--HTCCSEEEECCCCSSTTHHHHHHHHHH---TCCEEEESCC
T ss_pred HHHHHHHHhCcEEEEECC---CCcCCHHHHHHHHHHHH--HcCCCEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEcCC
Confidence 345666778988775432 1001222 233333 2579999987543 335555555554 5788888854
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEee
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~v 209 (263)
....-... .+.. +..+.+ .+..+++.|.+.....++++++.|..+. .-+.+.|++.|+++..+.
T Consensus 96 ~~~~~~~~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~- 167 (297)
T 3rot_A 96 PKDKTKNP------YLVF-LGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD- 167 (297)
T ss_dssp CSCTTTSC------CSCE-EECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CccccccC------cceE-EccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee-
Confidence 32110001 2221 223332 3345566666654335899999887642 446678888898875543
Q ss_pred eccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---C-CCceEEEEC
Q 024727 210 YTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---Q-WSNSVACIA 262 (263)
Q Consensus 210 Y~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~-~~~~i~~IG 262 (263)
.........+ +.+.+ .++|+|+..+-..+. ..++.+.+.. . .++.|++++
T Consensus 168 --~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~~dv~vig~D 225 (297)
T 3rot_A 168 --VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALD-PLGQMLLHPDRYDFNYQPQVYSFD 225 (297)
T ss_dssp --CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHSHHHHTCCCCCEEEEEC
T ss_pred --cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchH-HHHHHHHhcCCccCCCceEEEEeC
Confidence 1111111111 22212 478999999988877 7777766543 2 377777765
No 29
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=95.17 E-value=0.25 Score=41.82 Aligned_cols=172 Identities=11% Similarity=0.008 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.....-...++.+. .+++++++|....
T Consensus 29 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~-- 97 (285)
T 3c3k_A 29 GIEKTAEKNGYRILLCN---T--ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDP-- 97 (285)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCT--
T ss_pred HHHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccC--
Confidence 34556678898876432 1 1222211122221 36799999976432223344443 3678999986431
Q ss_pred HHHhhhhcCCCCceeecCCCCC-HHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~t-~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. ++.. +..+.+. +..+++.|.+. ..++|.++.|.... .-+.+.|++.|+++. ++...
T Consensus 98 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~ 163 (285)
T 3c3k_A 98 --LS------TVSS-VSIDDVAASEYVVDQLVKS--GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYA 163 (285)
T ss_dssp --TS------SSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecC
Confidence 12 3322 2233322 34455666664 34789999987542 335667888888765 22222
Q ss_pred cCCCChHH-HHH--HhC---CCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEE
Q 024727 214 PVHHVDQT-VLK--QAL---SIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACI 261 (263)
Q Consensus 214 ~~~~~~~~-~~~--~l~---~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~I 261 (263)
.......+ +.+ .+. ++|+|+..+-..+. ..++.+.+.. ..++.|+++
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vvg~ 219 (285)
T 3c3k_A 164 ENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAA-GAIQALTESGLSIPQDVAVVGF 219 (285)
T ss_dssp SSSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECS
T ss_pred CChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEe
Confidence 22222222 333 332 68999999887777 6666665432 235555544
No 30
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=95.14 E-value=0.053 Score=46.24 Aligned_cols=177 Identities=8% Similarity=0.027 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc--h---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDT--D---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~--~---~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~T 138 (263)
.+.+.++++|+++..... ....+. + .++..+ ...+|.||+.+...-...++.+.+. +++++++|...
T Consensus 29 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~--~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~ 100 (290)
T 2rgy_A 29 QTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLI--GRDCDGVVVISHDLHDEDLDELHRM---HPKMVFLNRAF 100 (290)
T ss_dssp HHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHH--HTTCSEEEECCSSSCHHHHHHHHHH---CSSEEEESSCC
T ss_pred HHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHH--hcCccEEEEecCCCCHHHHHHHhhc---CCCEEEEcccc
Confidence 345567788988764332 111111 1 222222 2579999987643223334444443 57889998643
Q ss_pred HHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeee
Q 024727 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (263)
.. . ++.. +..+.+ .+..+++.|.+. ..++|.++.|.... .-+.+.|++.|.++....++
T Consensus 101 ~~----~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~ 167 (290)
T 2rgy_A 101 DA----L------PDAS-FCPDHRRGGELAAATLIEH--GHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI 167 (290)
T ss_dssp TT----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE
T ss_pred CC----C------CCCE-EEeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE
Confidence 21 1 2221 222222 234455666664 34789999987542 23566788888876543333
Q ss_pred ccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 211 TTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 211 ~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
..........+ +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~di~vvg~D 225 (290)
T 2rgy_A 168 ESDFSPEGGYAATCQLLESKAPFTGLFCANDTMAV-SALARFQQLGISVPGDVSVIGYD 225 (290)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred ecCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEeC
Confidence 22111111111 22222 478999999888777 6666665443 2466676654
No 31
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=95.03 E-value=0.16 Score=44.17 Aligned_cols=177 Identities=10% Similarity=-0.018 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (263)
.+.+.++++|+++..... ..+.+.-.+.++. ...+|.||+.+.. .-..+...+.+. +++++++|.....
T Consensus 84 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAH---SQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHC---SSCEEEESSCCSS
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcC---CCCEEEEcCCCCC
Confidence 355667788988765431 1122211112211 2579999997643 223344444443 5678888864321
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecc
Q 024727 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
. ++.. +..+. ..+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 156 ----~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 222 (338)
T 3dbi_A 156 ----N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 222 (338)
T ss_dssp ----S------GGGE-ECBCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECC
T ss_pred ----C------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeC
Confidence 1 2222 22222 2234455666654 34789999987542 3366778889987754444332
Q ss_pred ccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
........+ +.+.+ .++|+|+..+-..+- ..++.+.+.. ..++.|+.++
T Consensus 223 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 223 KWTPASGAEGVEMLLERGAKFSALVASNDDMAI-GAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHH-HHHHHHHHcCCCCCCCeEEEEEC
Confidence 221111111 22222 478999999988777 6766665543 2467777654
No 32
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=94.83 E-value=0.18 Score=43.87 Aligned_cols=177 Identities=9% Similarity=0.043 Sum_probs=93.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.... . ..+.+.....++. ...+|.||+.+...-...++.+.+. +++++.+|....
T Consensus 84 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 153 (332)
T 2o20_A 84 GVDDIASMYKYNMILAN---S--DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNS---RTPVVLVGTIDG-- 153 (332)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHHH---CCCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEE---C--CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEccccC--
Confidence 34556677898876432 1 1222211122221 2579999987642212233434333 578888886421
Q ss_pred HHHhhhhcCCCCceeecCCCCC-HHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~t-~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. ++.. +..+.+. +...++.|.+. ..++|.++.|.... .-+.+.|++.|+++....++...
T Consensus 154 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 222 (332)
T 2o20_A 154 --DK------EIPS-VNIDYHLAAYQSTKKLIDS--GNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGN 222 (332)
T ss_dssp --TS------CSCE-EECCHHHHHHHHHHHHHHT--TCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSC
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 12 3332 2333322 34455666664 34789999987542 23567788899876543333321
Q ss_pred cCCCChHH-HHHHh-CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVDQT-VLKQA-LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~~~-~~~~l-~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.......+ +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 223 ~~~~~~~~~~~~ll~~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 223 YSYEQGKALAERLLERGATSAVVSHDTVAV-GLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEESCHHHHH-HHHHHHHHTTCCTTTTCEEEESS
T ss_pred CCHHHHHHHHHHHhccCCCEEEECChHHHH-HHHHHHHHcCCCCccCEEEEEeC
Confidence 11111111 22222 278999999988777 6666665443 2356666543
No 33
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=94.79 E-value=0.11 Score=43.84 Aligned_cols=178 Identities=8% Similarity=-0.024 Sum_probs=92.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.+...-....+.+.+. .+++++++|....
T Consensus 29 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~--- 98 (289)
T 1dbq_A 29 VEKNCFQKGYTLILGN---A--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEY--RHIPMVVMDWGEA--- 98 (289)
T ss_dssp HHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHT--TTSCEEEEECSSC---
T ss_pred HHHHHHHcCCeEEEEc---C--CCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc--cCCCEEEEccCCC---
Confidence 4556677898776421 1 1222221122221 2579999987643222334444431 3678888875321
Q ss_pred HHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCC-------chhHHHHHHhCCCeeeEEeeecccc
Q 024727 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
.. ++...+..+.+ .+..+++.|.+. ..++|.++.|... ..-+.+.|++.|.++....++....
T Consensus 99 -~~------~~~~~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~ 169 (289)
T 1dbq_A 99 -KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF 169 (289)
T ss_dssp -CS------SSCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCS
T ss_pred -cc------CcCCEEEeCcHHHHHHHHHHHHHC--CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCC
Confidence 12 32112233322 234556666664 3478999988643 2336678888887764332332111
Q ss_pred CCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 215 VHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 215 ~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
......+ +.+.+ .++|+|+..+-..+. .+++.+.+.. ..++.|++++
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~vP~di~vvg~d 223 (289)
T 1dbq_A 170 EPESGYRAMQQILSQPHRPTAVFCGGDIMAM-GALCAADEMGLRVPQDVSLIGYD 223 (289)
T ss_dssp SHHHHHHHHHHHHTSSSCCSEEEESCHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEeeC
Confidence 1111112 22223 368999999987777 6776665443 2466777664
No 34
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=94.77 E-value=0.11 Score=45.46 Aligned_cols=189 Identities=11% Similarity=0.017 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCH-HHHHHHHHHHHHcCCCCcEEEEeChhH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~-~aV~~~~~~l~~~~~~~~~i~aVG~~T 138 (263)
.+.+.++++|+++..... ..+.+ .++..+..-..+|.||++.. ......++.+.+ .++++++++...
T Consensus 25 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 96 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQG---SGIKLFIVNSPL 96 (350)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTT---SCCEEEEEESCC
T ss_pred HHHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHh---CCCcEEEEcCCC
Confidence 355666778988876521 11221 23444421148999999862 344444444433 478899987644
Q ss_pred HHHHHHhhhhc---CCCCceeecCCCC-CHHHHHHHhccCC----CCC-cEEEEEcCCCCc-------hhHHHHHHhCCC
Q 024727 139 ASIFEEVIQSS---KCSLDVAFSPSKA-TGKILASELPKNG----KKK-CTVLYPASAKAS-------NEIEEGLSNRGF 202 (263)
Q Consensus 139 a~~L~~~~~~~---~~G~~~~~~p~~~-t~e~L~~~l~~~~----~~~-~~vL~~~g~~~~-------~~L~~~L~~~G~ 202 (263)
...-+...+.+ .......+..+.+ .+..+++.|.+.. ... ++|+++.|..+. .-+.+.|++.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~ 176 (350)
T 3h75_A 97 TLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ 176 (350)
T ss_dssp CTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT
T ss_pred ChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 32110000000 0000111223322 2344455555543 112 689999987643 346677888886
Q ss_pred eeeEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC---CCceEEEEC
Q 024727 203 EVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIA 262 (263)
Q Consensus 203 ~v~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~---~~~~i~~IG 262 (263)
+....++..........+ +.+.+ .++|+|+..+...+. ..++.+.+... .++.|++++
T Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~-g~~~al~~~G~~vP~di~vvg~d 241 (350)
T 3h75_A 177 -VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMAL-GAMQAARELGRKPGTDLLFSGVN 241 (350)
T ss_dssp -EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEES
T ss_pred -eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHH-HHHHHHHHcCCCCCCCeEEEecC
Confidence 433333332221111111 22222 478899888887777 67766655432 367777765
No 35
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=94.76 E-value=1.3 Score=37.36 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=93.3
Q ss_pred HHHHHHHhCCC-cEEEeceEEeeeCCCchH----HHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeCh
Q 024727 64 KLIKALAKHRI-DCLELPLIQHAQGPDTDR----LSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 64 ~l~~~L~~~G~-~v~~~p~~~~~~~~~~~~----l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
.+.+.++++|+ ++.... . ..+.+. ++..+ ...+|.||+.... .....++.+.+ .++++++++.
T Consensus 23 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~~~~--~~~vdgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~ 92 (309)
T 2fvy_A 23 AIEQDAKAAPDVQLLMND---S--QNDQSKQNDQIDVLL--AKGVKALAINLVDPAAAGTVIEKARG---QNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHTCTTEEEEEEE---C--TTCHHHHHHHHHHHH--HTTCSEEEECCSSGGGHHHHHHHHHT---TTCCEEEESS
T ss_pred HHHHHHHhcCCeEEEEec---C--CCCHHHHHHHHHHHH--HcCCCEEEEeCCCcchhHHHHHHHHH---CCCcEEEecC
Confidence 45566777887 554331 1 122221 22222 2579999997633 23444555544 3678999886
Q ss_pred hHHHH-HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccC----------CCCCcEEEEEcCCCCc-------hhHHHHH
Q 024727 137 GTASI-FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN----------GKKKCTVLYPASAKAS-------NEIEEGL 197 (263)
Q Consensus 137 ~Ta~~-L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~----------~~~~~~vL~~~g~~~~-------~~L~~~L 197 (263)
..... +... .++. .+..+.+ .+..+++.|.+. .....+|+++.|.... .-+.+.|
T Consensus 93 ~~~~~~~~~~-----~~~~-~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l 166 (309)
T 2fvy_A 93 EPSRKALDSY-----DKAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL 166 (309)
T ss_dssp CCCHHHHHTC-----TTEE-EEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred CCCccccccc-----CccE-EEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHH
Confidence 43221 1111 0121 1223322 234444555541 1223579999886542 3366788
Q ss_pred HhCCCeeeEEeeeccccCCCChHH-HHHHhC-----CCCEEEEeCHHHHHHHHHHhccccCCC-CceEEEE
Q 024727 198 SNRGFEVVRLNTYTTEPVHHVDQT-VLKQAL-----SIPVVAVASPSAVRSSWVNLISDTEQW-SNSVACI 261 (263)
Q Consensus 198 ~~~G~~v~~~~vY~~~~~~~~~~~-~~~~l~-----~~d~vvFtS~s~v~~~~~~~~~~~~~~-~~~i~~I 261 (263)
++.|..+....++..........+ +.+.+. ++|+|+..+-..+. .+++.+.+.. . ++.|+++
T Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~al~~~g-~~di~vig~ 235 (309)
T 2fvy_A 167 NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM-GAVEALKAHN-KSSIPVFGV 235 (309)
T ss_dssp HHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHH-HHHHHHHHTT-CTTSCEECS
T ss_pred HhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHH-HHHHHHHHcC-CCCceEEec
Confidence 889988766544432221111112 222232 57999998888777 6776665433 3 5555544
No 36
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=94.65 E-value=0.12 Score=44.85 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=101.2
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeC----CCchHHHHHHhcCCCccEEEEe--------------
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDTDRLSSVLNADTIFDWIIIT-------------- 109 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~----~~~~~l~~~l~~l~~~d~IiFT-------------- 109 (263)
+.|++|++.........+.+.|.+.|+++.....-..... ...+++ .+.+.++|.|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ii~~~~~~~~~~~i~~~~ 79 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRID---EVDWNTVDAILLPISGTNEAGKVDTIF 79 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGG---GCCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccch---HHHHhcCCEEEeccccccCCceeeccc
Confidence 6789999998777677888999999999876532110000 000111 1234678988863
Q ss_pred --CHHHH-HHHHHHHHHcCCCCcEEEEeChhHH---HHHHHhhhhcCCCCceeecCC-----CCCHH----HHHHHhcc-
Q 024727 110 --SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATGK----ILASELPK- 173 (263)
Q Consensus 110 --S~~aV-~~~~~~l~~~~~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~p~-----~~t~e----~L~~~l~~- 173 (263)
++..+ +.+++. .++.+++++|--.- +++++. |+.+...|+ .+++. ..+..+..
T Consensus 80 ~~~~~~~~~~~l~~-----~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~ 148 (293)
T 3d4o_A 80 SNESIVLTEEMIEK-----TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH 148 (293)
T ss_dssp CSCCCBCCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHHh-----CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHh
Confidence 11111 222221 23456666775433 567888 998866663 22322 22222222
Q ss_pred --CCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCC--------C---hHHHHHHhCCCCEEEEeCHH
Q 024727 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPS 238 (263)
Q Consensus 174 --~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--------~---~~~~~~~l~~~d~vvFtS~s 238 (263)
....+++++++....-...+...|+..|.+| .+|.+..... . ...+.+.+...|+|+.+.|.
T Consensus 149 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 223 (293)
T 3d4o_A 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA 223 (293)
T ss_dssp CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh
Confidence 2246789999987766677888899999754 4555432110 0 01233435789999999885
No 37
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=94.63 E-value=0.28 Score=41.58 Aligned_cols=178 Identities=10% Similarity=0.009 Sum_probs=90.3
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~-p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
.+.+.++++|+++... ..-. .+....+.++..+ ...+|.||+.+...-...++.+.+ .+++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 99 (290)
T 3clk_A 29 GIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAI--ERPVMGILLLSIALTDDNLQLLQS---SDVPYCFLSMGFD--- 99 (290)
T ss_dssp HHHHHHHTTTCEEEEEC-----------CHHHHHH--SSCCSEEEEESCC----CHHHHHC---C--CEEEESCC-----
T ss_pred HHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHH--hcCCCEEEEecccCCHHHHHHHHh---CCCCEEEEcCCCC---
Confidence 3456667889887654 3211 1101112233333 357999998765432333444433 3678999986431
Q ss_pred HHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecccc
Q 024727 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
. .+. .+..+.+ .+..+++.|.+. ..++|.++.|.... .-+.+.|++.|+.+....++....
T Consensus 100 --~------~~~-~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~ 168 (290)
T 3clk_A 100 --D------DRP-FISSDDEDIGYQATNLLINE--GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDY 168 (290)
T ss_dssp --C------CSC-EEECCHHHHHHHHHHHHHTT--TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCS
T ss_pred --C------CCC-EEEeChHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCC
Confidence 1 111 1222222 234455666654 34789999886432 335677888888764322332211
Q ss_pred CCCChHH-HHHHh--CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 215 VHHVDQT-VLKQA--LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 215 ~~~~~~~-~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
......+ +.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 169 ~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 221 (290)
T 3clk_A 169 SYTSGEQAMKAFGKNTDLTGIIAASDMTAI-GILNQASSFGIEVPKDLSIVSID 221 (290)
T ss_dssp SHHHHHHHHHHHCTTCCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred ChhhHHHHHHHHhccCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEeC
Confidence 1111112 22223 378999999988777 6776665443 2467777664
No 38
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=94.62 E-value=0.13 Score=42.98 Aligned_cols=179 Identities=13% Similarity=0.057 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCC-ccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEeC
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~-~d~IiFTS~--~aV~~~~~~l~~~~~~~~~i~aVG 135 (263)
..+.+.++++|+++.....- ...+.+ .++..+ . .. +|.||+... ......++.+.+. +++++.+|
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~-~-~~~vdgii~~~~~~~~~~~~~~~~~~~---~ipvV~~~ 91 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHL-S-QAPPDALILAPNSAEDLTPSVAQYRAR---NIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHH-H-HSCCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHH-H-hCCCCEEEEeCCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 34566777889887755321 111222 233333 2 35 999999873 3445555655554 67899998
Q ss_pred hhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCC--CCcEEEEEcCCCCc-------hhHHHHHHhC-CCee
Q 024727 136 AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK--KKCTVLYPASAKAS-------NEIEEGLSNR-GFEV 204 (263)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~--~~~~vL~~~g~~~~-------~~L~~~L~~~-G~~v 204 (263)
.... .. +....+..+.+ .+..+++.|.+... ..++|.++.|.... .-+.+.|++. |+++
T Consensus 92 ~~~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 161 (276)
T 3ksm_A 92 SDLA----GD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRI 161 (276)
T ss_dssp SCCS----SS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred cCCC----CC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEE
Confidence 5431 12 32222333332 34455566666532 35789999987543 3355667777 7766
Q ss_pred eEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEEC
Q 024727 205 VRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIA 262 (263)
Q Consensus 205 ~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~IG 262 (263)
.. ++..........+ +.+.+ .++|+|+.++-..+. ..++.+.+... .++.|++++
T Consensus 162 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~p~di~vig~d 221 (276)
T 3ksm_A 162 IA--APYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTI-GALVAIRQSGMSKQFGFIGFD 221 (276)
T ss_dssp EE--CCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHH-HHHHHHHHTTCTTSSEEEEES
T ss_pred EE--EecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhh-HHHHHHHHcCCCCCeEEEEeC
Confidence 42 2221111111111 22222 478999999988877 77776655433 467777765
No 39
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=94.55 E-value=0.22 Score=43.74 Aligned_cols=190 Identities=7% Similarity=-0.022 Sum_probs=100.4
Q ss_pred CeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHH
Q 024727 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAW 121 (263)
Q Consensus 51 ~~ILitr~~~~~-------~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l 121 (263)
.+|.+.-+.... ..+.+.++++|+++..... ..+.+.....++. ...+|.||+.....-...++.+
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l 145 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLL 145 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 356655444322 3455667788988764321 1122211122211 2579999997654333444445
Q ss_pred HHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc--------hh
Q 024727 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS--------NE 192 (263)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~--------~~ 192 (263)
.+. +++++++|... ... ... .+..+.+ .+...++.|.+. ..++|.++.|.... .-
T Consensus 146 ~~~---~iPvV~i~~~~----~~~------~~~-~V~~D~~~~~~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~R~~G 209 (355)
T 3e3m_A 146 QRA---SIPIVEIWEKP----AHP------IGH-TVGFSNERAAYDMTNALLAR--GFRKIVFLGEKDDDWTRGAARRAG 209 (355)
T ss_dssp HHC---CSCEEEESSCC----SSC------SSE-EEECCHHHHHHHHHHHHHHT--TCCSEEEEEESSCTTSHHHHHHHH
T ss_pred HhC---CCCEEEECCcc----CCC------CCC-EEEeChHHHHHHHHHHHHHC--CCCeEEEEccCcccChhHHHHHHH
Confidence 443 67888887431 111 221 2233332 234455666664 34789999886532 23
Q ss_pred HHHHHHhCCCeeeE-EeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 193 IEEGLSNRGFEVVR-LNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 193 L~~~L~~~G~~v~~-~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
+.+.|++.|..+.. +.++..........+ +.+.+ ..+|+|+.++-..+- ..++.+.+.. ..++.|++++
T Consensus 210 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disvigfD 286 (355)
T 3e3m_A 210 FKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVSDMPAF-GLLSRLKSIGVAVPEQVSVVGFG 286 (355)
T ss_dssp HHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHHTCCTTTTCEEECSS
T ss_pred HHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEEC
Confidence 66778899988763 333322111111111 22222 478999999987777 6666665433 2456666543
No 40
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=94.34 E-value=0.53 Score=40.12 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=87.5
Q ss_pred HHHHHHHHhCCC---cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 63 GKLIKALAKHRI---DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 63 ~~l~~~L~~~G~---~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
..+.+.++++|+ ++... +.... .+.+.....++. -..+|.||+++..+...+.. . ..+++++.+|..
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~-~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~ 92 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKID-FMNSE--GDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS----A-TKDLPVIMAAIT 92 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEE-EEECT--TCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH----H-CSSSCEEEESCS
T ss_pred HHHHHHHHHcCCCCCceEEE-EecCC--CCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH----c-CCCCCEEEEecc
Confidence 345667888898 65432 11111 122222223322 35799999998766554332 1 247888888742
Q ss_pred HHHH---HHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC------chhHHHHHHhCCCeeeEEe
Q 024727 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (263)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~ 208 (263)
.... .... ...+-....+-+.......++.|.+.....++|.++.|... .+-+.+.|++.|+++....
T Consensus 93 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 169 (295)
T 3lft_A 93 DPIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFA 169 (295)
T ss_dssp CTTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1100 0000 00011111122233455666677665333489999988643 2456778889999887766
Q ss_pred eeccccCCCChHH-HHHHhCCCCEEEEeCHHHHH
Q 024727 209 TYTTEPVHHVDQT-VLKQALSIPVVAVASPSAVR 241 (263)
Q Consensus 209 vY~~~~~~~~~~~-~~~~l~~~d~vvFtS~s~v~ 241 (263)
++.. ....+ +.+.+.++|+|+..+-..+-
T Consensus 170 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~ 199 (295)
T 3lft_A 170 VPST----NEIASTVTVMTSKVDAIWVPIDNTIA 199 (295)
T ss_dssp ESSG----GGHHHHHHHHTTTCSEEEECSCHHHH
T ss_pred cCCH----HHHHHHHHHHHhcCCEEEECCchhHH
Confidence 6532 12222 33323689998888755444
No 41
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=94.34 E-value=0.1 Score=43.89 Aligned_cols=174 Identities=12% Similarity=0.084 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (263)
.+.+.++++|+++.....- .+....+.++..+ ...+|.|| .+...-...+.. .+++++.+|.... .
T Consensus 26 gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~--~~~vdgiI-~~~~~~~~~~~~------~~iPvV~~~~~~~---~ 91 (280)
T 3gyb_A 26 SLSDVLTPKGYRLSVIDSL--TSQAGTDPITSAL--SMRPDGII-IAQDIPDFTVPD------SLPPFVIAGTRIT---Q 91 (280)
T ss_dssp HHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHH--TTCCSEEE-EESCC--------------CCCEEEESCCCS---S
T ss_pred HHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHH--hCCCCEEE-ecCCCChhhHhh------cCCCEEEECCCCC---C
Confidence 3556677889988876654 2111123344433 36899999 444332322221 4788999986531 1
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCC
Q 024727 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (263)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (263)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.|... ..-+.+.|++.|..+....++. .....
T Consensus 92 ~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~-~~~~~ 161 (280)
T 3gyb_A 92 AS------THDS-VANDDFRGAEIATKHLIDL--GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLG-PAVEH 161 (280)
T ss_dssp SC------STTE-EEECHHHHHHHHHHHHHHT--TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCS-CCCHH
T ss_pred CC------CCCE-EEechHHHHHHHHHHHHHC--CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccC-CCCHH
Confidence 12 3332 22232 2345556666664 3478999998764 3446677889998776443221 11111
Q ss_pred ChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 218 VDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 218 ~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
...+ +.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 162 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 162 AGYTETLALLKEHPEVTAIFSSNDITAI-GALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCeeEEEEEC
Confidence 1111 22222 478999999988877 7777665543 2467777765
No 42
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.29 E-value=0.27 Score=42.05 Aligned_cols=175 Identities=13% Similarity=0.041 Sum_probs=98.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEeChhHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~-~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (263)
.+.+.++++|+++..... . .+.+...+.++ ....+|.||+.+...-.. .++.+.+ +++++++|.....
T Consensus 36 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~~~ 106 (303)
T 3kke_A 36 GVQMAASGHSTDVLLGQI---D--APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRVPG 106 (303)
T ss_dssp HHHHHHHHTTCCEEEEEC---C--STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCCTT
T ss_pred HHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcCCC
Confidence 455677788998875432 1 12221122222 236899999987544333 4444433 5789999865422
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecc
Q 024727 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
. +.. +..+. ..+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 107 ---~--------~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 172 (303)
T 3kke_A 107 ---R--------VGS-VILDDQKGGGIATEHLITL--GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDA 172 (303)
T ss_dssp ---C--------CCE-EEECHHHHHHHHHHHHHHT--TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred ---C--------CCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 1 111 22222 2334455666664 34789999987652 3356678889987654333332
Q ss_pred ccCCCCh-HHHHHH-----h---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 213 EPVHHVD-QTVLKQ-----A---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~-~~~~~~-----l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
....... +.+.+. + .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 173 ~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vig~D 233 (303)
T 3kke_A 173 GWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAV-GALSTALRLGLRVPEDLSIVGIN 233 (303)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEEc
Confidence 2211111 123333 3 368999999988777 7777665543 2467777664
No 43
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.90 E-value=0.12 Score=44.38 Aligned_cols=174 Identities=9% Similarity=-0.039 Sum_probs=96.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.....- .+.+.....++ ....+|.||+.+...-...++.+.+. +++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~--- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEF---KVPYLIVGKSL--- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHT---TCCEEEESCCC---
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHHc---CCCEEEECCCC---
Confidence 3455667789887754321 11111112221 23689999998654333444445443 67899998653
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
... ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+.. ++...
T Consensus 117 -~~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~ 184 (305)
T 3huu_A 117 -NYE------NIIH-IDNDNIDAAYQLTQYLYHL--GHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS 184 (305)
T ss_dssp -SST------TCCE-EECCHHHHHHHHHHHHHHT--TCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS
T ss_pred -ccc------CCcE-EEeCHHHHHHHHHHHHHHC--CCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC
Confidence 122 3332 233332 334555666664 34789999887653 3356778899988876 22221
Q ss_pred cCCCChHHHHHH-h---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~~~~~~~-l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
... ..+.+.+. + .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 185 ~~~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~g~~vP~di~vig~D 238 (305)
T 3huu_A 185 MND-LRDFIKQYCIDASHMPSVIITSDVMLNM-QLLNVLYEYQLRIPEDIQTATFN 238 (305)
T ss_dssp HHH-HHHHC--------CCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEES
T ss_pred cHH-HHHHHHHhhhcCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCcceEEEEEC
Confidence 111 11112222 2 478999999987777 7777665543 2467777664
No 44
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=93.89 E-value=0.96 Score=38.65 Aligned_cols=163 Identities=7% Similarity=-0.025 Sum_probs=85.5
Q ss_pred HHHHHHHhCCC----cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~----~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
-+.+.++++|+ ++..+ +.... .+.+.....++. -..+|.||+++..+...+.. . ..+++++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~---~--~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTAQ--GNPAIAVQIARQFVGENPDVLVGIATPTAQALVS---A--TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEECT--TCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH---H--CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecCC--CCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh---c--CCCcCEEEEecC
Confidence 45667788898 54422 11221 122222222222 25799999998766554332 1 246788877732
Q ss_pred HHHH---HHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC------chhHHHHHHhCCCeeeEEe
Q 024727 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (263)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~ 208 (263)
.... .... ...+-...-+.+.......++.|.+.....++|.++.+... .+-+.+.|++.|+++....
T Consensus 100 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 176 (302)
T 2qh8_A 100 DPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp CTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHhhcCccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1110 0000 00011111122233455556666665334589999988653 2456778889999887766
Q ss_pred eeccccCCCChHH-HHHHhCCCCEEEEeCHHHHH
Q 024727 209 TYTTEPVHHVDQT-VLKQALSIPVVAVASPSAVR 241 (263)
Q Consensus 209 vY~~~~~~~~~~~-~~~~l~~~d~vvFtS~s~v~ 241 (263)
++.. ....+ +.+.+.++|+|+..+-..+-
T Consensus 177 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~ 206 (302)
T 2qh8_A 177 ALKS----ADVQSATQAIAEKSDVIYALIDNTVA 206 (302)
T ss_dssp CSSG----GGHHHHHHHHGGGCSEEEECSCHHHH
T ss_pred cCCh----HHHHHHHHHHhccCCEEEECCcHhHH
Confidence 6532 12222 33323688998888755443
No 45
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=93.81 E-value=0.13 Score=44.73 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=99.7
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEE----eC----------HH
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIII----TS----------PE 112 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~-~~~l~~~l~~l~~~d~IiF----TS----------~~ 112 (263)
+.|++|++...........+.|.+.|+++.....-+...... ....++..+.+.++|.|+. .. ..
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~ 84 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE 84 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence 678999999887667788899999999987543211110000 0000011122457898886 21 11
Q ss_pred H--H-HHHHHHHHHcCCCCcEEEEeChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh-------------cc
Q 024727 113 A--G-SVFLEAWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------------PK 173 (263)
Q Consensus 113 a--V-~~~~~~l~~~~~~~~~i~aVG~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l-------------~~ 173 (263)
- + +.+++. .++.+++++|--. .+++.+. |+.+...|.. +.-.+...+ ..
T Consensus 85 ~~~~~~~~l~~-----~~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~-~~v~~~r~~~~~~g~~~~~~~~~~ 152 (300)
T 2rir_A 85 EVVLKQDHLDR-----TPAHCVIFSGISNAYLENIAAQA------KRKLVKLFER-DDIAIYNSIPTVEGTIMLAIQHTD 152 (300)
T ss_dssp CEECCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CccchHHHHhh-----cCCCCEEEEecCCHHHHHHHHHC------CCEEEeecCC-CceEEEcCccHHHHHHHHHHHhcC
Confidence 1 1 223222 2345556677543 4577888 9998766653 221222221 11
Q ss_pred CCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-----------hHHHHHHhCCCCEEEEeCHH
Q 024727 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------DQTVLKQALSIPVVAVASPS 238 (263)
Q Consensus 174 ~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----------~~~~~~~l~~~d~vvFtS~s 238 (263)
....+++++++....-...+...|...|++| .+|.+...... ...+.+.+...|+|+.+.|.
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGANV---KVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 2346789999987666677888899999754 45554321100 11233445689999998885
No 46
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=93.80 E-value=0.5 Score=39.25 Aligned_cols=176 Identities=9% Similarity=0.009 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhHH
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (263)
..+.+.++++|+++..... ..+.+...+.++. ...+|.||+.+.. .-...++.+.+. +++++++|....
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~ 93 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASS-----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDK---GLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHT---TCCEEEESSCCC
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHc---CCCEEEEccCCC
Confidence 3455677788998875432 1122211122211 2579999997654 113344444443 678898886432
Q ss_pred HHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeec
Q 024727 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (263)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.|.... .-+.+.|++.|+++.. ++.
T Consensus 94 ----~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~ 158 (272)
T 3o74_A 94 ----PA------HFCS-VISDDRDASRQLAASLLSS--APRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR--YQG 158 (272)
T ss_dssp ----TT------TCEE-EEECHHHHHHHHHHHHHTT--CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE--EEE
T ss_pred ----cc------ccCE-EEEchHHHHHHHHHHHHHC--CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe--eec
Confidence 12 3322 22232 2334555666654 34789999887643 3455667788876532 222
Q ss_pred cccCCCChHH-HHHHh---C-CCCEEEEeCHHHHHHHHHHhccccC--CCCceEEEEC
Q 024727 212 TEPVHHVDQT-VLKQA---L-SIPVVAVASPSAVRSSWVNLISDTE--QWSNSVACIA 262 (263)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~-~~d~vvFtS~s~v~~~~~~~~~~~~--~~~~~i~~IG 262 (263)
.........+ +.+.+ . ++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 159 EAFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQ-GVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHH-HHHHHHHTSCGGGCCCEEEEES
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHH-HHHHHHHHcCCCccceEEEEeC
Confidence 2111111111 22222 4 69999999988877 7777665543 2466777664
No 47
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=93.72 E-value=0.15 Score=44.41 Aligned_cols=177 Identities=10% Similarity=0.029 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+...+.++.+ ..+|.||+.+...-...++.+.+ .+++++++|....
T Consensus 81 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 150 (332)
T 2hsg_A 81 GIEDIATMYKYNIILSNS-----DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK---SPVPVVLAASIES-- 150 (332)
T ss_dssp HHHHHHHHHTCEEEEEEC-----CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHTT---SSSCEEEESCCCS--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHh---CCCCEEEEccccC--
Confidence 345566778988765321 11222222233332 57999998764322223333322 3688999986421
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCC-Cc-------hhHHHHHHhCCCeeeEEeeecc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-AS-------NEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~-~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
.. ++.. +..+.+ .+..+++.|.+. ..++|.++.|.. .. .-+.+.|++.|+.+....++..
T Consensus 151 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 219 (332)
T 2hsg_A 151 --TN------QIPS-VTIDYEQAAFDAVQSLIDS--GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG 219 (332)
T ss_dssp --CT------TSCE-EEECHHHHHHHHHHHHHTT--TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 12 3322 223322 234455666654 347899999875 32 3466788889987654323322
Q ss_pred ccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC---CCceEEEEC
Q 024727 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~---~~~~i~~IG 262 (263)
........+ +.+.+ .++|+|+..+-..+- ..++.+.+... .++.|++++
T Consensus 220 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 220 DYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMAL-GVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp CSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHH-HHHHHHHHTTCCHHHHCEEEEES
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHH-HHHHHHHHcCCCCCCCeEEEEEC
Confidence 111111111 22222 368999999888777 66666654322 245555543
No 48
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=93.60 E-value=0.63 Score=39.17 Aligned_cols=176 Identities=11% Similarity=0.101 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++..... . .+.+ .++..+ ...+|.||+.... .....++.+.+. +++++++|..
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 98 (293)
T 3l6u_A 29 AFKAEAKANKYEALVATS---Q--NSRISEREQILEFV--HLKVDAIFITTLDDVYIGSAIEEAKKA---GIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHTTCEEEEEEC---S--SCHHHHHHHHHHHH--HTTCSEEEEECSCTTTTHHHHHHHHHT---TCCEEEESSC
T ss_pred HHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHH--HcCCCEEEEecCChHHHHHHHHHHHHc---CCCEEEecCC
Confidence 455667788998875532 1 1222 223322 2579999997543 333445555543 6789998854
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccC--C---CCCcEEEEEcCCCCc-------hhHHHHHHhC-CCe
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN--G---KKKCTVLYPASAKAS-------NEIEEGLSNR-GFE 203 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~--~---~~~~~vL~~~g~~~~-------~~L~~~L~~~-G~~ 203 (263)
... .. ++.. +..+.+ .+..+++.|.+. . ...++|+++.|.... .-+.+.|++. |++
T Consensus 99 ~~~---~~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~ 168 (293)
T 3l6u_A 99 IRS---DA------VVSS-ITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLS 168 (293)
T ss_dssp CCC---TT------CSEE-EEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE
T ss_pred CCC---Cc------ceeE-EecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcE
Confidence 321 01 2222 223322 234445555552 2 111399999987543 3456677788 887
Q ss_pred eeEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 204 VVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 204 v~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
+... +..........+ +.+.+ .++|+|+.++-..+. ..++.+.+....++.|++++
T Consensus 169 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~di~vig~d 228 (293)
T 3l6u_A 169 IVDS--VSGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAM-GVLEALKKAKISGKIVVGID 228 (293)
T ss_dssp EEEE--EECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHH-HHHHHHHHTTCCCCEEEEEE
T ss_pred Eeee--ccCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHH-HHHHHHHhCCCCCeEEEEec
Confidence 6543 221111111111 22222 478999999988887 77777665433366666654
No 49
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=93.57 E-value=0.22 Score=42.81 Aligned_cols=177 Identities=9% Similarity=0.029 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++..... . ..+.+ .++..+ ...+|.||+.... .+...++.+.+. ++++++++..
T Consensus 21 gi~~~~~~~g~~~~~~~~---~-~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 91 (313)
T 2h3h_A 21 GVKAAGKALGVDTKFFVP---Q-KEDINAQLQMLESFI--AEGVNGIAIAPSDPTAVIPTIKKALEM---GIPVVTLDTD 91 (313)
T ss_dssp HHHHHHHHHTCEEEEECC---S-SSCHHHHHHHHHHHH--HTTCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSC
T ss_pred HHHHHHHHcCCEEEEECC---C-CCCHHHHHHHHHHHH--HcCCCEEEEeCCChHHHHHHHHHHHHC---CCeEEEeCCC
Confidence 345566778987654321 0 11222 123323 2579999986543 223344444443 6789888864
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEee
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~v 209 (263)
... .. ++.. +..+.+ .+..+++.|.+.....++|.++.|.... .-+.+.|++.|+++...
T Consensus 92 ~~~---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~-- 159 (313)
T 2h3h_A 92 SPD---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDI-- 159 (313)
T ss_dssp CTT---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEE--
T ss_pred CCC---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEe--
Confidence 211 01 2222 223322 2344455565542234799999987542 33566777888876542
Q ss_pred eccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC-CCCceEEEEC
Q 024727 210 YTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE-QWSNSVACIA 262 (263)
Q Consensus 210 Y~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~-~~~~~i~~IG 262 (263)
+..........+ +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~G~p~dv~vvg~d 216 (313)
T 2h3h_A 160 LNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGP-AQALVVKNAGKVGKVKIVCFD 216 (313)
T ss_dssp EECSSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHH-HHHHHHHHTTCTTTSEEEEEC
T ss_pred ecCCCCHHHHHHHHHHHHHHCcCceEEEEcCCCccH-HHHHHHHHcCCCCCeEEEEeC
Confidence 221111111111 22222 368999998876666 6666655433 2357777664
No 50
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=93.57 E-value=0.21 Score=42.20 Aligned_cols=190 Identities=12% Similarity=0.050 Sum_probs=102.4
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-----HHHH
Q 024727 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-----AGSV 116 (263)
Q Consensus 51 ~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-----aV~~ 116 (263)
++|.+.-+... ...+.+.++++|+++.....- .+.+...+.++. -..+|.||+.... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 45655544322 234566777889987754321 222211122211 2689999997653 2233
Q ss_pred HHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCC------
Q 024727 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------ 189 (263)
Q Consensus 117 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~------ 189 (263)
.++.+.+. +++++.+|.... .. ++.. +..+. ..+..+++.|.+. ..++|.++.+...
T Consensus 91 ~~~~~~~~---~iPvV~~~~~~~----~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~R 154 (298)
T 3tb6_A 91 YYLNLEKN---GIPFAMINASYA----EL------AAPS-FTLDDVKGGMMAAEHLLSL--GHTHMMGIFKADDTQGVKR 154 (298)
T ss_dssp HHHHHHHT---TCCEEEESSCCT----TC------SSCE-EEECHHHHHHHHHHHHHHT--TCCSEEEEEESSSHHHHHH
T ss_pred HHHHHHhc---CCCEEEEecCcC----CC------CCCE-EEeCcHHHHHHHHHHHHHC--CCCcEEEEcCCCCccHHHH
Confidence 44445443 678999986431 12 3322 22222 2345556666664 3478999987654
Q ss_pred chhHHHHHHhCCCeeeEEeeec--cccCCCC-hHHHHHHh---CC--CCEEEEeCHHHHHHHHHHhccccC---CCCceE
Q 024727 190 SNEIEEGLSNRGFEVVRLNTYT--TEPVHHV-DQTVLKQA---LS--IPVVAVASPSAVRSSWVNLISDTE---QWSNSV 258 (263)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~--~~~~~~~-~~~~~~~l---~~--~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i 258 (263)
..-+.+.|++.|+.+....++. ....... .+.+.+.+ .+ +|+|+..+-..+. ..++.+.+.. ..++.|
T Consensus 155 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~v 233 (298)
T 3tb6_A 155 MNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIAL-KVIDMLREMDLKVPEDMSI 233 (298)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHH-HHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHH-HHHHHHHHcCCCCCCceEE
Confidence 2335678888888764332222 1111110 11122222 35 8999999988877 7777666543 235666
Q ss_pred EEEC
Q 024727 259 ACIA 262 (263)
Q Consensus 259 ~~IG 262 (263)
++++
T Consensus 234 vg~d 237 (298)
T 3tb6_A 234 VGYD 237 (298)
T ss_dssp ECSB
T ss_pred EecC
Confidence 6543
No 51
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=93.51 E-value=0.29 Score=40.88 Aligned_cols=177 Identities=12% Similarity=0.058 Sum_probs=89.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (263)
.+.+.++++|+++.....-.. +....+.++..+ ...+|.||+.+...-...++ .....+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~---~~~~~~iPvV~~~~~~~---- 89 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILSL-ARLKRYLENTTL--AYLTDGLILASYDLTERFEE---GRLPTERPVVLVDAQNP---- 89 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCSC-CCCC-----------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCT----
T ss_pred HHHHHHHHCCCEEEEEeCCCc-hhhHHHHHHHHH--hCCCCEEEEecCCCCHHHHH---HHhhcCCCEEEEeccCC----
Confidence 455666788988765432110 000111222222 25799999876543222222 22224788999986431
Q ss_pred HhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCC-C---c--------hhHHHHHHhCCCeeeEEeee
Q 024727 144 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-A---S--------NEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~-~---~--------~~L~~~L~~~G~~v~~~~vY 210 (263)
++. .+..+.+ .+..+++.|.+. ..++|.++.|.. . . .-+.+.|++.|.++....++
T Consensus 90 --------~~~-~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~ 158 (276)
T 2h0a_A 90 --------RYD-SVYLDNRLGGRLAGAYLARF--PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLY 158 (276)
T ss_dssp --------TSE-EEEECSHHHHHHHHHHHTTS--SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEE
T ss_pred --------CCC-EEEEccHHHHHHHHHHHHHc--CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHee
Confidence 211 1223332 345556777664 347999998875 3 1 12456788888876533233
Q ss_pred ccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 211 TTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 211 ~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
..........+ +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 216 (276)
T 2h0a_A 159 ITRHSQEGGRLALRHFLEKASPPLNVFAGADQVAL-GVLEEAVRLGLTPGRDVRVLGFD 216 (276)
T ss_dssp EECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHH-HHHHHHHTTSCTTTTSEEEEEES
T ss_pred ecCCChHHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCCeEEEEeC
Confidence 22111111112 22223 258899888888777 7777665543 2456676654
No 52
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=93.44 E-value=0.36 Score=42.09 Aligned_cols=183 Identities=10% Similarity=-0.042 Sum_probs=97.7
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 024727 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (263)
Q Consensus 50 g~~ILitr~~~~~-------~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~ 122 (263)
..+|.+.-+.... ..+.+.++++|+++.....-. +....+.++..+ ...+|.||+.+. +.
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~--~~~vdGiIi~~~---------~~ 130 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--VQAQDVVMESLI--SIQAAGIIHVPV---------VG 130 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--HHHHHHHHHHHH--HHTCSEEEECCC---------TT
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHHH--hCCCCEEEEcch---------HH
Confidence 3456655554322 234556677898887654321 000011122222 257999999887 22
Q ss_pred HcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHH
Q 024727 123 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIE 194 (263)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~ 194 (263)
.....+++++.+|.... .. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.
T Consensus 131 ~~~~~~iPvV~~~~~~~----~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 131 SIAPEGIPMVQLTRGEL----GP------GFPR-VLCDDEAGFFQLTESVLGG--SGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp CCC-CCSCEEEECC--------C------CSCE-EEECHHHHHHHHHHHHCCS--SSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhhCCCCEEEECccCC----CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22224789999997542 23 4443 223332 344555666654 35789999998543 3356
Q ss_pred HHHHhCCCeeeEEeeeccccCCCChHH-HHHHh--CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 195 EGLSNRGFEVVRLNTYTTEPVHHVDQT-VLKQA--LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 195 ~~L~~~G~~v~~~~vY~~~~~~~~~~~-~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
+.|++.|.. ..++..........+ +.+.+ ..+|+|+..+-..+- ..++.+.+.. ..++.|++++
T Consensus 198 ~al~~~g~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 198 HAASIYGAE---VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMA-GVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHTTCE---EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHH-HHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHCCCC---EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEEC
Confidence 678888876 222201111111111 22222 138999999988777 6776665543 2467777664
No 53
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=93.26 E-value=0.13 Score=44.94 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=95.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.....-....+.+.+. +++++++|...
T Consensus 89 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~--- 157 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGV---T--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAA---GIPVVEIMDSD--- 157 (344)
T ss_dssp HHHHHHTSSSSEEEEEE---C--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHC---SSCEEEEEECS---
T ss_pred HHHHHHHHCCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhC---CCCEEEEeCCC---
Confidence 45556667788875432 1 1122211222221 3579999998654333444445443 67888886421
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCC--C------chhHHHHHHhCCCeeeEEeeecc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK--A------SNEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~--~------~~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
... +.. .+..+.+ .+...++.|.+.. .++|.++.|.. . ..-+.+.|++.|..+....+|..
T Consensus 158 -~~~------~~~-~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 158 -GKP------VDA-MVGISHRRAGREMAQAILKAG--YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp -SCC------SSE-EEEECHHHHHHHHHHHHHHHT--CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred -CCC------CCC-EEEECcHHHHHHHHHHHHHCC--CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 111 221 1223332 3344556666542 46899998875 2 13356788899988876666543
Q ss_pred ccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEE
Q 024727 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACI 261 (263)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~I 261 (263)
........+ +.+.+ .++|+|+.++-..+- ..++.+.+.. ..++.|+++
T Consensus 228 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~g~~vP~disvvg~ 282 (344)
T 3kjx_A 228 GSALAKGREMTQAMLERSPDLDFLYYSNDMIAA-GGLLYLLEQGIDIPGQIGLAGF 282 (344)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEE
Confidence 221111112 22222 478999999988777 6666665443 235556554
No 54
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=93.14 E-value=0.36 Score=42.03 Aligned_cols=175 Identities=9% Similarity=-0.005 Sum_probs=92.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
+.+.++++|+++... .. ..+.+.....++. ...+|.||+.+...-......+.+ ..+++++++|....
T Consensus 80 i~~~a~~~g~~~~~~---~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~--- 149 (340)
T 1qpz_A 80 VEKNCFQKGYTLILG---NA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA--- 149 (340)
T ss_dssp HHHHHHHTTCEEEEE---EC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC---
T ss_pred HHHHHHHcCCEEEEE---eC--CCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC---
Confidence 455667789887642 11 1222221122221 257999999764322223343432 13678888875321
Q ss_pred HHhhhhcCCCCceeecCCCCC-HHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecccc
Q 024727 143 EEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~t-~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
.. +....+..+.+. +...++.|.+. ..++|.++.|.... .-+.+.|++.|+.+....++..
T Consensus 150 -~~------~~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~-- 218 (340)
T 1qpz_A 150 -KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG-- 218 (340)
T ss_dssp -CC------SSSEEEECCHHHHHHHHHHHHHHH--TCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCC--
T ss_pred -CC------CCCCEEEECHHHHHHHHHHHHHHC--CCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeC--
Confidence 12 221123333322 34455666654 34789999887542 2356778888877644333321
Q ss_pred CCCChH---H-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 215 VHHVDQ---T-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 215 ~~~~~~---~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.+..+ + +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|+.++
T Consensus 219 -~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvig~D 274 (340)
T 1qpz_A 219 -DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAM-GALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp -CSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred -CCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCCeEEEeEC
Confidence 12221 1 22223 368999999987777 6666665443 2466676653
No 55
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.01 E-value=1.1 Score=34.28 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=70.2
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHH
Q 024727 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~~~~ 119 (263)
..+|++..... +..-+...|+..|++|+++-.. .| .+++-+...+ .+.|.|..++.. .+..+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--~p---~e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--SP---QELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--EC---HHHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHH
Confidence 34677665432 2345678899999999988663 22 2333333322 467887776633 2455667
Q ss_pred HHHHcCCCCcEEEEeChhH---------HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 120 AWKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~T---------a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.+++.+..++++++=|..+ .+.+++. |+... .+...+..+.++.+.+
T Consensus 77 ~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~-~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRV-YAPGTPPEVGIADLKK 132 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEE-CCTTCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEE-ECCCCCHHHHHHHHHH
Confidence 7777766578888877541 4568998 99864 4445577777776654
No 56
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=92.40 E-value=1.4 Score=37.88 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=78.1
Q ss_pred CCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCC
Q 024727 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKK 177 (263)
Q Consensus 101 ~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~ 177 (263)
..+|.||+.+.. .....++.+.+. ++++++++..... .. .+.. +..+.+ .+..+++.|.+....
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~---~~------~~~~-V~~D~~~~g~~a~~~L~~~~~G 127 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQK---GIPVILVDRKILS---DK------YTAY-IGADNYEIGRSVGNYIASSLKG 127 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHT---TCCEEEESSCCSS---SC------SSEE-EEECHHHHHHHHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHC---CCeEEEeCCCCCC---cc------eeEE-EecCHHHHHHHHHHHHHHHcCC
Confidence 579999987543 333444544443 5789998854211 01 1221 223322 334455666654223
Q ss_pred CcEEEEEcCCCCc-------hhHHHHHHhC-CCeeeEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHH
Q 024727 178 KCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWV 245 (263)
Q Consensus 178 ~~~vL~~~g~~~~-------~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~ 245 (263)
.++|.++.|.... .-+.+.|++. |+++..+ .| .........+ +.+.+ .++|+|+.++-..+- .++
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~-~~-~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd~~A~-g~~ 204 (325)
T 2x7x_A 128 KGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK-AD-AAWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAP-GAY 204 (325)
T ss_dssp EEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE-EE-CTTSHHHHHHHHHHHHHHCSCCCEEEESSTTHHH-HHH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEee-ec-CCCCHHHHHHHHHHHHHhCCCCCEEEECCCchHH-HHH
Confidence 4789999987542 2355677777 7776542 22 1111111111 22222 368999998887666 666
Q ss_pred HhccccC-CCCceEEEEC
Q 024727 246 NLISDTE-QWSNSVACIA 262 (263)
Q Consensus 246 ~~~~~~~-~~~~~i~~IG 262 (263)
+.+.+.. ..++.|++++
T Consensus 205 ~al~~~Gip~dv~vig~D 222 (325)
T 2x7x_A 205 QAAKMAGREKEMIFVGID 222 (325)
T ss_dssp HHHHHTTCTTSSEEEEEE
T ss_pred HHHHHcCCCCCeEEEEEC
Confidence 6554433 2356666654
No 57
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=92.28 E-value=1.9 Score=35.96 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+...+.++ ....+|.||+..... ...++.+.+. +++++++|....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~~~---~iPvV~i~~~~~-- 96 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDA-----NADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEILHQ---QMPVVSVDREMD-- 96 (276)
T ss_dssp HHHHHHHTTTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHHTT---SSCEEEESCCCT--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHHHC---CCCEEEEecccC--
Confidence 455667788988775432 112221112221 136899999998776 5566655543 678999986431
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCC-chhHHH---HHHhCCCeeeEEeeeccccCC
Q 024727 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-SNEIEE---GLSNRGFEVVRLNTYTTEPVH 216 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~-~~~L~~---~L~~~G~~v~~~~vY~~~~~~ 216 (263)
.. ++.. +..+. ..+...++.|.+. ..++|.++.|... .....+ .+++.=.+...+.+.......
T Consensus 97 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~ 165 (276)
T 3jy6_A 97 --AC------PWPQ-VVTDNFEAAKAATTAFRQQ--GYQHVVVLTSELELSRTRQERYRGILAAAQDVDVLEVSESSYNH 165 (276)
T ss_dssp --TC------SSCE-EECCHHHHHHHHHHHHHTT--TCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEEEEECSSSCCH
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCcEEEeccccCC
Confidence 22 3332 22332 2345556666664 3478999999775 333222 222211111112222110000
Q ss_pred -CChHHHHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 217 -HVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 217 -~~~~~~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
...+.+.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 166 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d 217 (276)
T 3jy6_A 166 SEVHQRLTQLITQNDQKTVAFALKERWLL-EFFPNLIISGLIDNQTVTATGFA 217 (276)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEESSHHHHH-HHSHHHHHSSSCCSSSEEEEEBC
T ss_pred cHHHHHHHHHHhcCCCCcEEEEeCcHHHH-HHHHHHHHcCCCCCCcEEEEEEC
Confidence 0111223323 478999999988887 7777666543 2456666654
No 58
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=92.26 E-value=0.43 Score=40.61 Aligned_cols=175 Identities=8% Similarity=0.038 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~---~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (263)
.+.+.++++|+++.....- .+.+ ++.+.+ ....+|.||+.....-....+.+.+. +++++++|.....
T Consensus 33 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l-~~~~vdGiI~~~~~~~~~~~~~l~~~---~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 33 GISETCNQHGYGTQTTVSN-----NMNDLMDEVYKMI-KQRMVDAFILLYSKENDPIKQMLIDE---SMPFIVIGKPTSD 103 (295)
T ss_dssp HHHHHHHTTTCEEEECCCC-----SHHHHHHHHHHHH-HTTCCSEEEESCCCTTCHHHHHHHHT---TCCEEEESCCCSS
T ss_pred HHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHH-HhCCcCEEEEcCcccChHHHHHHHhC---CCCEEEECCCCcc
Confidence 4566777889888654321 1111 112222 23689999997654333444445443 6789999864311
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecc
Q 024727 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
. .. ++.. +..+. ..+...++.|.+. ..++|.++.|.... .-+.+.|++.|+.+. .++ .
T Consensus 104 ~--~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~--~~~-~ 169 (295)
T 3hcw_A 104 I--DH------QFTH-IDNDNILASENLTRHVIEQ--GVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ--IIE-T 169 (295)
T ss_dssp G--GG------GSCE-EEECHHHHHHHHHHHHHHH--CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE--EEE-E
T ss_pred c--cC------CceE-EecCcHHHHHHHHHHHHHc--CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee--EEe-c
Confidence 1 00 1111 22222 2334455666654 34799999987543 345667889998775 222 2
Q ss_pred ccCCCChHH----HHHHhC---CCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 213 EPVHHVDQT----VLKQAL---SIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~~~----~~~~l~---~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
........+ +++... .+|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~D 228 (295)
T 3hcw_A 170 SNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHL-AILSVLYELNIEIPKDVMTATFN 228 (295)
T ss_dssp CSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHH-HHHHHHHHTTCCTTTTEEEEEEC
T ss_pred cCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEeC
Confidence 111111111 222112 68898888877666 6666665443 2466676654
No 59
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=92.16 E-value=1 Score=35.51 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 024727 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (263)
Q Consensus 49 ~g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~~~ 118 (263)
...+|++..+.. +..-+...|+..|++|+++.... | .+++.+...+ .++|.|.+++. ..+..++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~--p---~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ--T---PEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC--C---HHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC--C---HHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHH
Confidence 345777775432 34567888899999999887642 1 2344444433 57888888774 3566677
Q ss_pred HHHHHcCCCCcEEEEeChhHHH---HHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 119 EAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~---~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+.+++.+.+++++++-|....+ .+++. |....+.|. .+.++.++.+.+
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~~-~~~~~~~~~~~~ 141 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLPG-TSLGEIIEKVRK 141 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECTT-CCHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECCC-CCHHHHHHHHHH
Confidence 7777776667888888865543 37777 997545443 444444445443
No 60
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=92.08 E-value=0.71 Score=38.60 Aligned_cols=178 Identities=9% Similarity=0.054 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (263)
.+.+.++++|+++.... . ..+.+.-...++. ...+|.||+.+.. .....++.+.+. +++++.++....
T Consensus 22 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~i~~~~~ 93 (271)
T 2dri_A 22 GAQKEADKLGYNLVVLD---S--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA---NIPVITLDRQAT 93 (271)
T ss_dssp HHHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSCCS
T ss_pred HHHHHHHHcCcEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC---CCcEEEecCCCC
Confidence 34556777898776431 1 1222211122221 3579999987543 222334444443 578999885321
Q ss_pred HHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeec
Q 024727 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (263)
.. +....+..+.+ .+...++.|.+.....++|.++.|..+. .-+.+.|++.|+++... .+
T Consensus 94 ----~~------~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~- 161 (271)
T 2dri_A 94 ----KG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS-QP- 161 (271)
T ss_dssp ----SS------CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE-EE-
T ss_pred ----CC------ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe-cC-
Confidence 11 22111223322 2344455665543223799999987542 23567788888876432 12
Q ss_pred cccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 212 TEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
.........+ +.+.+ ..+++|+.++-..+- ..++.+.+....++.|+.++
T Consensus 162 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~g~~dv~vvGfD 215 (271)
T 2dri_A 162 ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMAL-GALRALQTAGKSDVMVVGFD 215 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHHTCCSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHH-HHHHHHHHcCCCCcEEEEec
Confidence 1111111111 22222 368999999988777 77776655434466666553
No 61
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=92.05 E-value=0.58 Score=39.21 Aligned_cols=168 Identities=11% Similarity=-0.013 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (263)
.+.+.++++|+++..... . .+.+. . ... .+|.||+.....-...++.+.+ .+++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~---~-~~~-~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~---- 91 (277)
T 3cs3_A 29 GIKKGLALFDYEMIVCSG---K--KSHLF---I-PEK-MVDGAIILDWTFPTKEIEKFAE---RGHSIVVLDRTTE---- 91 (277)
T ss_dssp HHHHHHHTTTCEEEEEES---T--TTTTC---C-CTT-TCSEEEEECTTSCHHHHHHHHH---TTCEEEESSSCCC----
T ss_pred HHHHHHHHCCCeEEEEeC---C--CCHHH---H-hhc-cccEEEEecCCCCHHHHHHHHh---cCCCEEEEecCCC----
Confidence 445667788988764321 1 11110 0 012 7999998765322233344443 3688999985421
Q ss_pred HhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccccC
Q 024727 144 EVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.. ++.. +..+.+ ....+++.|.+. ..++|.++.|.... .-+.+.|++.|+++. ++.....
T Consensus 92 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~ 159 (277)
T 3cs3_A 92 HR------NIRQ-VLLDNRGGATQAIEQFVNV--GSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFT 159 (277)
T ss_dssp ST------TEEE-EEECHHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSS
T ss_pred CC------CCCE-EEeCcHHHHHHHHHHHHHc--CCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCC
Confidence 12 2222 222322 234455666664 34789999987542 235567888898765 2222111
Q ss_pred CCChHH-HHHHhC----CCCEEEEeCHHHHHHHHHHhccccCC---CCceEEEE
Q 024727 216 HHVDQT-VLKQAL----SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACI 261 (263)
Q Consensus 216 ~~~~~~-~~~~l~----~~d~vvFtS~s~v~~~~~~~~~~~~~---~~~~i~~I 261 (263)
.....+ +.+.+. ++|+|+.++-..+. .+++.+.+... .++.|+++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~ 212 (277)
T 3cs3_A 160 EPSGYAAAKKILSQPQTEPVDVFAFNDEMAI-GVYKYVAETNYQMGKDIRIIGF 212 (277)
T ss_dssp HHHHHHHHHHHTTSCCCSSEEEEESSHHHHH-HHHHHHTTSSCCBTTTEEEECS
T ss_pred hhHHHHHHHHHHhcCCCCCcEEEEcChHHHH-HHHHHHHHcCCCCCCcEEEEEe
Confidence 111111 222232 57899888888877 77777765431 34555544
No 62
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=91.90 E-value=0.86 Score=38.50 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEeChhHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV-~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (263)
.+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.+...- ...++.+ ...++++++++....
T Consensus 41 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~---~~~~iPvV~~~~~~~- 111 (293)
T 2iks_A 41 YLERQARQRGYQLLIAC---S--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW---ANDPFPIVALDRALD- 111 (293)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT---TTSSSCEEEEESCCC-
T ss_pred HHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH---HhCCCCEEEECCccC-
Confidence 34556678898876432 1 1122211122221 257999999765321 1122222 223688998875421
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecc
Q 024727 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.|.... .-+.+.|++.|.+. ..++..
T Consensus 112 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~--~~~~~~ 177 (293)
T 2iks_A 112 ---RE------HFTS-VVGADQDDAEMLAEELRKF--PAETVLYLGALPELSVSFLREQGFRTAWKDDPREV--HFLYAN 177 (293)
T ss_dssp ---TT------TCEE-EEECHHHHHHHHHHHHHTS--CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE--EEEEES
T ss_pred ---cC------CCCE-EEecCHHHHHHHHHHHHHC--CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCc--cEEEcC
Confidence 12 3332 22332 2334556666654 34789999887542 23566777888632 223322
Q ss_pred ccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
........+ +.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 178 SYEREAAAQLFEKWLETHPMPQALFTTSFALLQ-GVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp SSCHHHHHHHHHHHTTTSCCCSEEEESSHHHHH-HHHHHHHHHHSSCCSSCEEEEES
T ss_pred CCChhhHHHHHHHHHhcCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEEC
Confidence 111111112 22223 258999999888776 6666654432 2456677654
No 63
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=91.85 E-value=2.1 Score=35.91 Aligned_cols=176 Identities=10% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++.... . ..+.+ .++..+ ...+|.||+.+.. .+...++.+.+. +++++.++..
T Consensus 22 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 91 (283)
T 2ioy_A 22 GAEEKAKELGYKIIVED---S--QNDSSKELSNVEDLI--QQKVDVLLINPVDSDAVVTAIKEANSK---NIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHH--HTTCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSC
T ss_pred HHHHHHHhcCcEEEEec---C--CCCHHHHHHHHHHHH--HcCCCEEEEeCCchhhhHHHHHHHHHC---CCeEEEecCC
Confidence 34556677898876432 1 12221 233333 2579999987542 222334444443 5788888853
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhC-CCeeeEEe
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLN 208 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~-G~~v~~~~ 208 (263)
.. .. .....+..+.+ .+...++.|.+.....++|.++.|..+. .-+.+.|++. |+++..
T Consensus 92 ~~----~~------~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~-- 159 (283)
T 2ioy_A 92 AN----GG------DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA-- 159 (283)
T ss_dssp CS----SS------CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--
T ss_pred CC----Cc------ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--
Confidence 21 11 11111223332 2344556666642124799999986542 2355677776 766532
Q ss_pred eeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 209 TYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 209 vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
++..........+ +.+.+ .++++|+..+-..+- ..++.+.+....++.|+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~di~viG~D 216 (283)
T 2ioy_A 160 KQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMAL-GAIKAIEAANRQGIIVVGFD 216 (283)
T ss_dssp EEECTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHH-HHHHHHHHTTCCCCEEEEEE
T ss_pred eccCCCCHHHHHHHHHHHHHhCCCccEEEECCchHHH-HHHHHHHHCCCCCcEEEEeC
Confidence 2211111111111 22222 368999999987777 66666654433466666653
No 64
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=91.79 E-value=0.27 Score=41.45 Aligned_cols=165 Identities=8% Similarity=-0.007 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCc-EEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChh-HH
Q 024727 64 KLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-TA 139 (263)
Q Consensus 64 ~l~~~L~~~G~~-v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~-Ta 139 (263)
.+.+.++++|++ +...+.- .+.+.-.+.++. ...+|.||+.+ ..+......+++++.+|.. ..
T Consensus 31 gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~~ 97 (277)
T 3hs3_A 31 GIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANIN 97 (277)
T ss_dssp HHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCCC
T ss_pred HHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEcccccC
Confidence 455667788988 5543221 122211112211 25899999998 1112222247899999864 21
Q ss_pred HHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeec
Q 024727 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (263)
.. ++ . +..+.+ .+...++.|. . ..++|.++.|.... .-+.+.|++.|..+... ++.
T Consensus 98 ----~~------~~-~-V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~ 161 (277)
T 3hs3_A 98 ----DD------IV-R-IVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETP 161 (277)
T ss_dssp ----SS------SE-E-EEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC
T ss_pred ----CC------CE-E-EEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc
Confidence 12 33 2 233332 2344555665 2 35799999987542 34567788999988765 443
Q ss_pred cccCCCChHHHHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEE
Q 024727 212 TEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACI 261 (263)
Q Consensus 212 ~~~~~~~~~~~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~I 261 (263)
.... .+.+.+.+ .++|+|+..+-..+. ..++.+.+.. ..++.|+++
T Consensus 162 ~~~~---~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~ 213 (277)
T 3hs3_A 162 ENNP---YISAQSALNKSNQFDAIITVNDLYAA-EIIKEAKRRNLKIPDDFQLVGY 213 (277)
T ss_dssp SSCH---HHHHHHHHHTGGGCSEEECSSHHHHH-HHHHHHHHTTCCTTTTCEEECS
T ss_pred CCch---HHHHHHHHcCCCCCCEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEee
Confidence 3221 22222222 478999999988777 6776665543 235666554
No 65
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=91.60 E-value=1.4 Score=40.39 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=97.8
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~-~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~~~~~l~~ 123 (263)
.+...++|+++.+-. +...+.|++.|+ ++...+- . .+.+++.+ .+.++|++++.|..-+. .+++.+
T Consensus 11 ~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~-~~~~~l~~---~~~~~d~l~v~~~~~i~~~~l~~~-- 78 (416)
T 3k5p_A 11 LSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----A-LDKADLIK---AISSAHIIGIRSRTQLTEEIFAAA-- 78 (416)
T ss_dssp -CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHH---HHTTCSEEEECSSCCBCHHHHHHC--
T ss_pred CCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----C-CCHHHHHH---HccCCEEEEEcCCCCCCHHHHHhC--
Confidence 334457899997653 556678888998 6655331 1 12333333 34789999887754332 222222
Q ss_pred cCCCCcEEE-EeChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc--------c-----------------
Q 024727 124 AGTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------K----------------- 173 (263)
Q Consensus 124 ~~~~~~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--------~----------------- 173 (263)
++.+++ +.|-.+ -+++++. |+.+.-.|. ++++.+++... +
T Consensus 79 ---p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~ 148 (416)
T 3k5p_A 79 ---NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA 148 (416)
T ss_dssp ---TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC
T ss_pred ---CCcEEEEECccccCccCHHHHHhc------CcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC
Confidence 245544 335444 5788899 999866663 45544432211 0
Q ss_pred ---CCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHhCCCCEEEEeCHHH
Q 024727 174 ---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 174 ---~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~l~~~d~vvFtS~s~ 239 (263)
....|+++.++.-..-...+...|+..|.+| ..|++...... ...+.+.+...|+|++.-|.+
T Consensus 149 ~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V---~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 149 IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTV---RYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 1134678888876665667888999999865 45554322110 112333345889999887764
No 66
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=91.43 E-value=1.7 Score=37.04 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeCh
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~a--V~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
..+.+.++++|+++..... ..+.+ .++..+ ...+|.||+..... ....++.+.+. +++++++|.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~ 91 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMI--NRGVDVLVIIPYNGQVLSNVVKEAKQE---GIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHH--HTTCSEEEEECSSTTSCHHHHHHHHTT---TCEEEEESS
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHH--HcCCCEEEEeCCChhhhHHHHHHHHHC---CCeEEEECC
Confidence 3466777888988775432 12222 122222 25799999987543 23455555443 689999986
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhC----CCee
Q 024727 137 GTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEV 204 (263)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~----G~~v 204 (263)
.... . ++...+..+.+ .+..+++.|.+.. ..++|+++.|.... .-+.+.|++. |+.+
T Consensus 92 ~~~~----~------~~~~~V~~D~~~~g~~a~~~L~~~~-G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~ 160 (313)
T 3m9w_A 92 MIND----A------DIDFYISFDNEKVGELQAKALVDIV-PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV 160 (313)
T ss_dssp CCTT----S------CCSEEEEECHHHHHHHHHHHHHHHC-SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred cCCC----C------CceEEEecCHHHHHHHHHHHHHHhC-CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEE
Confidence 5321 3 44222333333 3455566666222 34699999887653 3344556555 4554
Q ss_pred eEEeeeccccCCCChH----HHHHHh-CCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEE
Q 024727 205 VRLNTYTTEPVHHVDQ----TVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACI 261 (263)
Q Consensus 205 ~~~~vY~~~~~~~~~~----~~~~~l-~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~I 261 (263)
..... .......... ++++.- .++++|+.++-..+. ..++.+.+... .++.|+++
T Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~~di~vig~ 221 (313)
T 3m9w_A 161 VGDQW-VDGWLPENALKIMENALTANNNKIDAVVASNDATAG-GAIQALSAQGLSGKVAISGQ 221 (313)
T ss_dssp EEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHH-HHHHHHHTTTCTTTSEECCC
T ss_pred Eeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHH-HHHHHHHHcCCCCCcEEEec
Confidence 33222 1111111111 122222 478999999988887 77777665432 24555443
No 67
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=91.17 E-value=0.83 Score=38.91 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=90.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChhHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a--V~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (263)
.+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.+... ....++.+.+. +++++++|....
T Consensus 23 gi~~~a~~~g~~l~~~~---~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~ 94 (306)
T 2vk2_A 23 VAKSEAEKRGITLKIAD---G--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA---EIPVFLLDRSID 94 (306)
T ss_dssp HHHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHT---TCCEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHC---CCCEEEecCCCC
Confidence 34566778898876432 1 1222211122221 14799999876532 23344445443 578888885421
Q ss_pred HHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCC-CcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeee
Q 024727 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKK-KCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~-~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (263)
..-... ++.. +..+.+ .+..+++.|.+.... .++|.++.|.... .-+.+.|++.|. +..+.++
T Consensus 95 ~~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~ 166 (306)
T 2vk2_A 95 VKDKSL------YMTT-VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQ 166 (306)
T ss_dssp CSCGGG------SSEE-EECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEE
T ss_pred CCCccc------eEEE-EecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEec
Confidence 100001 1221 223322 234455566554211 3789999887542 235566777775 3323232
Q ss_pred ccccCCCChHH----HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 211 TTEPVHHVDQT----VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 211 ~~~~~~~~~~~----~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
..........+ +++.- .++|+|+.++-..+. ..++.+.+.. ..++.|++++
T Consensus 167 ~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vig~D 227 (306)
T 2vk2_A 167 SGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI-GAIQAIKEAGLKPGKDILTGSID 227 (306)
T ss_dssp ECTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEEE
T ss_pred cCCCcHHHHHHHHHHHHHhCCCCCCeeEEEECCchHHH-HHHHHHHHcCCCCCCCeEEEeec
Confidence 22111111111 22211 358999999888777 6766665443 2466676654
No 68
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=90.96 E-value=2.2 Score=35.40 Aligned_cols=172 Identities=12% Similarity=0.022 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHH-HHHHcCCCCcEEEEeChhHH
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 139 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~-~l~~~~~~~~~i~aVG~~Ta 139 (263)
..+.+.++++|+++..... ..+.+.....++. ...+|.||+.+.+ ...++ .+.+. +++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~~---~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTDH---HIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHHC----CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHcC---CCCEEEEeccCC
Confidence 3456677788998875322 1122211222221 2579999998733 33344 45543 678999987543
Q ss_pred HHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeec
Q 024727 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (263)
..- + +..+. ..+..+++.|.+. ..++|+++.|.... .-+.+.|++.|..+.. ..+
T Consensus 98 ~~~--~-----------V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~- 160 (277)
T 3e61_A 98 EHN--G-----------ISTNHFKGGQLQAEVVRKG--KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM-LEA- 160 (277)
T ss_dssp ---------------------HHHHHHHHHHHHHHT--TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE-EEG-
T ss_pred CCC--e-----------EEechHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-eec-
Confidence 211 2 11121 2344556666664 34789999887643 3466778888888776 333
Q ss_pred cccCCCChHHHHHHhCCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 212 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.........+.+..-.++|+|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 161 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d 213 (277)
T 3e61_A 161 TLLDNDKKFIDLIKELSIDSIICSNDLLAI-NVLGIVQRYHFKVPAEIQIIGYD 213 (277)
T ss_dssp GGGGSHHHHHHHHHHHTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECSB
T ss_pred CCCCHHHHHHHhhcCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEeeC
Confidence 222221111122212489999999988877 7777665543 2356665543
No 69
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=90.76 E-value=1.2 Score=38.10 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
-+.+.++++|+++.... . ..+.+.....++. -..+|.||+++..--+.+.+.. ...++++++.++...
T Consensus 28 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~~~--~~~p~~p~v~id~~~--- 97 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEE---G--VNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFSTIH--NQYPDVHFVSFNGEV--- 97 (296)
T ss_dssp HHHHHHHHSCCEEEEEC---C--CCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHTTT--TSCTTSEEEEESCCC---
T ss_pred HHHHHHHHhCCeEEEEe---C--CCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHHHH--HHCCCCEEEEEecCc---
Confidence 45566778898765432 1 1221211222222 2579999998865433322211 112478899987532
Q ss_pred HHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC---chhHHHHHHhCCCeeeEEeeeccccCCC-
Q 024727 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVHH- 217 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~---~~~L~~~L~~~G~~v~~~~vY~~~~~~~- 217 (263)
... ++.. +..+.+.+.-++-.+..+..+.++|.++.|... ..-+.+.+++.|.+ ....+|.......
T Consensus 98 -~~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (296)
T 2hqb_A 98 -KGE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDAD 168 (296)
T ss_dssp -CSS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHH
T ss_pred -CCC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHH
Confidence 112 3322 334444443343332333223589999998643 23356778888876 5444554322111
Q ss_pred ChHHH-HHHh-CCCCEEEEeCHHHHHHHHHHhcc
Q 024727 218 VDQTV-LKQA-LSIPVVAVASPSAVRSSWVNLIS 249 (263)
Q Consensus 218 ~~~~~-~~~l-~~~d~vvFtS~s~v~~~~~~~~~ 249 (263)
...+. .+.+ ..+|+|+..+-..+- ..++.+.
T Consensus 169 ~g~~~a~~ll~~~~daI~~~~D~~a~-Gv~~a~~ 201 (296)
T 2hqb_A 169 KALELFQELQKEQVDVFYPAGDGYHV-PVVEAIK 201 (296)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTTHH-HHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCH-HHHHHHH
Confidence 11122 2223 478988888776555 5555443
No 70
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=90.69 E-value=0.72 Score=41.49 Aligned_cols=174 Identities=11% Similarity=-0.001 Sum_probs=89.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHH
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 144 (263)
+.+.++++|+++..... . ...+.++... -..+|.||+.... ....+.+.+ .+++++.+|......-..
T Consensus 46 i~~~a~~~g~~~~i~~~---~--~~~~~i~~l~--~~~vDGiIi~~~~--~~~~~~l~~---~~iPvV~i~~~~~~~~~~ 113 (412)
T 4fe7_A 46 VGEYLQASQSEWDIFIE---E--DFRARIDKIK--DWLGDGVIADFDD--KQIEQALAD---VDVPIVGVGGSYHLAESY 113 (412)
T ss_dssp HHHHHHHHTCCEEEEEC---C---CC----------CCCSEEEEETTC--HHHHHHHTT---CCSCEEEEEECCSSGGGS
T ss_pred HHHHHHhcCCCeEEEec---C--CccchhhhHh--cCCCCEEEEecCC--hHHHHHHhh---CCCCEEEecCCccccccC
Confidence 44556677988876542 1 1112222222 3579999995432 223333332 378899998643211111
Q ss_pred hhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc---------hhHHHHHHhCCCeeeEEeeecccc
Q 024727 145 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 145 ~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~---------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
. ++.. +..+. ..+...++.|.+. ..++|.++.|.... .-+.+.|++.|.....+. ....
T Consensus 114 ~------~~~~-V~~D~~~~g~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~--~~~~ 182 (412)
T 4fe7_A 114 P------PVHY-IATDNYALVESAFLHLKEK--GVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQ--GLET 182 (412)
T ss_dssp C------SSEE-EEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEEC--CSCS
T ss_pred C------CCCE-EEeCHHHHHHHHHHHHHHc--CCceEEEecccccccccHHHHHHHHHHHHHHHcCCCccccc--cccc
Confidence 2 3322 22332 2344556666664 34799999987643 225667888887653222 1111
Q ss_pred CCCChH----HHHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 215 VHHVDQ----TVLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 215 ~~~~~~----~~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.....+ .+.+.+ .++|+|+.++-..+. ..++.+.+.. ..++.|+.++
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~~A~-g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 183 APENWQHAQNRLADWLQTLPPQTGIIAVTDARAR-HILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp SCSSHHHHHHHHHHHHHHSCTTEEEEESSHHHHH-HHHHHHHHHTCCTTTTSEEEESS
T ss_pred cccchhhHHHHHHHHHHhCCCCeEEEEEecHHHH-HHHHHHHHcCCCCCceEEEEeec
Confidence 111211 122212 478999999988777 6766665432 2456666554
No 71
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=90.53 E-value=3.4 Score=34.67 Aligned_cols=182 Identities=8% Similarity=-0.002 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~a--V~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++..... ....+.+ .++..+ ...+|.||+.+... ....++.+.+. ++++++++..
T Consensus 22 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 93 (288)
T 1gud_A 22 GIEDEAKTLGVSVDIFAS---PSEGDFQSQLQLFEDLS--NKNYKGIAFAPLSSVNLVMPVARAWKK---GIYLVNLDEK 93 (288)
T ss_dssp HHHHHHHHHTCCEEEEEC---SSTTCHHHHHHHHHHHH--TSSEEEEEECCSSSSTTHHHHHHHHHT---TCEEEEESSC
T ss_pred HHHHHHHHcCCEEEEeCC---CCCCCHHHHHHHHHHHH--HcCCCEEEEeCCChHHHHHHHHHHHHC---CCeEEEECCC
Confidence 345567788988765321 0111221 122222 35799999976432 22233444443 6789999864
Q ss_pred HH-HHHHHhhhhcCCCCce-eec-CCCCC-HHHHHHHhccCCC-CCcEEEEEcCCCCc-------hhHHHHHHhC-CCee
Q 024727 138 TA-SIFEEVIQSSKCSLDV-AFS-PSKAT-GKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNR-GFEV 204 (263)
Q Consensus 138 Ta-~~L~~~~~~~~~G~~~-~~~-p~~~t-~e~L~~~l~~~~~-~~~~vL~~~g~~~~-------~~L~~~L~~~-G~~v 204 (263)
.. ...+.. |... .++ .+.+. +...++.|.+... ..++|.++.|.... .-+.+.|++. |+++
T Consensus 94 ~~~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~ 167 (288)
T 1gud_A 94 IDMDNLKKA------GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKL 167 (288)
T ss_dssp CCHHHHHHT------TCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CCccccccc------CCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEE
Confidence 22 223334 4332 223 33322 3444555655411 13789999987543 2355677767 7765
Q ss_pred eEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEEC
Q 024727 205 VRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIA 262 (263)
Q Consensus 205 ~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~IG 262 (263)
.. ++..........+ +.+.+ .++++|+.++-..+- ..++.+.+... .++.|+.++
T Consensus 168 ~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~~dv~vvGfD 227 (288)
T 1gud_A 168 VA--SQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAM-GVAQAVANAGKTGKVLVVGTD 227 (288)
T ss_dssp EE--EEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHTTCTTTSEEEEES
T ss_pred EE--eecCCccHHHHHHHHHHHHHhCCCceEEEECCCchHH-HHHHHHHhcCCCCCeEEEEeC
Confidence 33 2211111111111 22222 368999999988777 77776655432 356676654
No 72
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=90.43 E-value=1.3 Score=38.27 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCC--ccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeC
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTI--FDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~--~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG 135 (263)
.+.+.++++|+++..... ..+.+ .++..+ . .. +|.||+.... .....++.+.+. ++++++++
T Consensus 26 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~-~-~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~ 95 (332)
T 2rjo_A 26 GAQSFAKSVGLPYVPLTT-----EGSSEKGIADIRALL-Q-KTGGNLVLNVDPNDSADARVIVEACSKA---GAYVTTIW 95 (332)
T ss_dssp HHHHHHHHHTCCEEEEEC-----TTCHHHHHHHHHHHH-H-HTTTCEEEEECCSSHHHHHHHHHHHHHH---TCEEEEES
T ss_pred HHHHHHHHcCCEEEEecC-----CCCHHHHHHHHHHHH-H-CCCCCCEEEEeCCCHHHHHHHHHHHHHC---CCeEEEEC
Confidence 445667788988765421 12222 123333 1 35 9999987643 233444545443 57899988
Q ss_pred hhHHHH-HHHhhhhcCCC-Cceee-cCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhC-CCe
Q 024727 136 AGTASI-FEEVIQSSKCS-LDVAF-SPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFE 203 (263)
Q Consensus 136 ~~Ta~~-L~~~~~~~~~G-~~~~~-~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~-G~~ 203 (263)
...... ...+ + ..... ..+. ..+..+++.|.+.....++|.++.|.... .-+.+.|++. |++
T Consensus 96 ~~~~~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~ 169 (332)
T 2rjo_A 96 NKPKDLHPWDY------NPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQ 169 (332)
T ss_dssp CCCTTCCGGGG------TTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE
T ss_pred CCCCcccchhc------ccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 643210 0011 1 11122 2222 23344556666632234789999987542 2356778888 887
Q ss_pred eeEEeeeccccCCCChH----HHHHH-hCCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEE
Q 024727 204 VVRLNTYTTEPVHHVDQ----TVLKQ-ALSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACI 261 (263)
Q Consensus 204 v~~~~vY~~~~~~~~~~----~~~~~-l~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~I 261 (263)
+..+ +.......... ++++. -.++|+|+.++-..+. .+++.+.+... .++.|+++
T Consensus 170 ~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~~A~-g~~~al~~~G~~~di~vvg~ 230 (332)
T 2rjo_A 170 LLDF--QVADWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMAL-GAIEALRAEGLAGQIPVTGM 230 (332)
T ss_dssp EEEE--EECTTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHH-HHHHHHHHTTCBTTBCEECS
T ss_pred EEee--ccCCCCHHHHHHHHHHHHHhcCCCeeEEEECCCchHH-HHHHHHHHcCCCCCCEEEee
Confidence 7653 22111111111 12221 1258899998888777 77766654332 24555544
No 73
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=90.23 E-value=3.2 Score=36.08 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=89.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+...+.++. ...+|.||+.+...-...++.+.+. +++++++|.....
T Consensus 87 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~---~iPvV~i~~~~~~- 157 (348)
T 3bil_A 87 EIQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQKQ---GMPVVLVDRELPG- 157 (348)
T ss_dssp HHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHHC----CCEEEESSCCSC-
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhC---CCCEEEEcccCCC-
Confidence 345566778998765421 1222211122221 2579999987654333344444443 5788998854211
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|.+.. + ++..
T Consensus 158 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~-v~~~- 223 (348)
T 3bil_A 158 --DS------TIPT-ATSNPQPGIAAAVELLAHN--NALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQ-L-VFLG- 223 (348)
T ss_dssp --C-------CCCE-EEEECHHHHHHHHHHHHHT--TCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC-E-EECC-
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCcc-E-EEcC-
Confidence 02 3322 223332 245556677664 34789999987542 335677888887332 2 2221
Q ss_pred cCCCChH---H-HHHHh--CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 214 PVHHVDQ---T-VLKQA--LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 214 ~~~~~~~---~-~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.+..+ + +.+.+ ..+ +|+..+-..+. ..++.+.+.. ..++.|++++
T Consensus 224 --~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~-g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 224 --GYEQSVGFEGATKLLDQGAK-TLFAGDSMMTI-GVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp --CSSHHHHHHHHHHHHHTTCS-EEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEES
T ss_pred --CCCHHHHHHHHHHHHcCCCC-EEEEcChHHHH-HHHHHHHHcCCCCCCCeEEEEeC
Confidence 12221 1 22222 136 77777777666 6666655433 2466777654
No 74
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=89.95 E-value=1.3 Score=32.79 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhc--CCCccEEEEeCHHH
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA 113 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~------------~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a 113 (263)
+.+++|+|+....-...+.+.|.+.|.++..+-.- ..... +... ...+.. ...+|.++.+.+..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~-d~~~-~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIA-NATE-ENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEEC-CTTC-HHHHHTTTGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEe-CCCC-HHHHHhcCCCCCCEEEECCCCc
Confidence 45678999987545677888888889876643210 00100 1111 112222 35789999888752
Q ss_pred --H-HHHHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 114 --G-SVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 114 --V-~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
. ......+.+.+.+ +++ +-++...+.+++. |....+.|....+..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~~ 137 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIP--NIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSLS 137 (144)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHHh
Confidence 2 2333444454432 444 3466667788887 988767776666666665553
No 75
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=89.92 E-value=4.4 Score=29.50 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=67.1
Q ss_pred cCCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 024727 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~ 122 (263)
......+.+||+.-... ....+...|++.|+++... .+.++....+.. ..+|.|+....++.+ +++.+.
T Consensus 12 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~~~~~g~~-~~~~l~ 81 (137)
T 2pln_A 12 SLVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDI-RNYDLVMVSDKNALS-FVSRIK 81 (137)
T ss_dssp ---CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-SCCSEEEECSTTHHH-HHHHHH
T ss_pred cccCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEcCccHHH-HHHHHH
Confidence 33556688999986654 3467888888888765422 233333344433 578999943445554 444555
Q ss_pred HcCCC-CcEEEEeCh-h---HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCC
Q 024727 123 EAGTP-NVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (263)
Q Consensus 123 ~~~~~-~~~i~aVG~-~---Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~ 175 (263)
+. . +++++++.. . ....+.+. |.. ++..+.. +.+.|...+....
T Consensus 82 ~~--~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 82 EK--HSSIVVLVSSDNPTSEEEVHAFEQ------GAD-DYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HH--STTSEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCSCHHHHHHHHHHHT
T ss_pred hc--CCCccEEEEeCCCCHHHHHHHHHc------CCc-eeeeCCCCCHHHHHHHHHHHH
Confidence 54 4 677776633 2 23334445 765 4667777 8999988776543
No 76
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=89.71 E-value=0.82 Score=38.64 Aligned_cols=176 Identities=7% Similarity=0.014 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchH----HHHHHhcCCCccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~----l~~~l~~l~~~d~IiFTS~--~aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++..+- .. ..+.+. ++..+ ...+|.||+... ......++.+.+. ++++++++..
T Consensus 25 g~~~~~~~~g~~~~~~~---~~-~~~~~~~~~~~~~l~--~~~vdgiii~~~~~~~~~~~~~~~~~~---~ipvV~~~~~ 95 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVG---PS-STDAPQQVKIIEDLI--ARKVDAITIVPNDANVLEPVFKKARDA---GIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHTTEEEEEEC---CS-SSCHHHHHHHHHHHH--HTTCSEEEECCSCHHHHHHHHHHHHHT---TCEEEEESCT
T ss_pred HHHHHHHHcCCEEEEEC---CC-CCCHHHHHHHHHHHH--HcCCCEEEEecCChHHHHHHHHHHHHC---CCeEEEEecC
Confidence 34556777887664321 00 112221 22222 257999988654 3333344544443 6889999864
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEe-
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN- 208 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~- 208 (263)
. .... ++.. +..+.+ .+..+++.|.+.....++++++.|.... .-+.+.|++.|..+..+.
T Consensus 96 ~---~~~~------~~~~-v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 165 (303)
T 3d02_A 96 G---QPSA------NWDV-EIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTR 165 (303)
T ss_dssp T---CTTC------SEEE-ESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSS
T ss_pred C---CCCC------ceEE-EecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 1 1111 2221 223322 2344556666522122389999887543 224556665543332222
Q ss_pred eeccccCCCChH---H-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEEC
Q 024727 209 TYTTEPVHHVDQ---T-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIA 262 (263)
Q Consensus 209 vY~~~~~~~~~~---~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~IG 262 (263)
.|.. .+..+ + +.+.+ .++|+|+..+-..+. ..++.+.+... .++.|++++
T Consensus 166 ~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~dv~vig~d 223 (303)
T 3d02_A 166 RMPV---AESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPI-GAGRAVKEKRAKNKVAVYGMM 223 (303)
T ss_dssp CBSC---TTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHH-HHHHHHHHTTCTTTCEEEECC
T ss_pred ecCC---CCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchh-HHHHHHHhcCCCCCeEEEEeC
Confidence 1221 22221 1 22222 367888888866666 56665554332 356666654
No 77
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=89.50 E-value=1.2 Score=34.31 Aligned_cols=121 Identities=9% Similarity=-0.019 Sum_probs=70.8
Q ss_pred cCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE-----------eeeC-CCchHHHHHHhc--CCCccEEEEe
Q 024727 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-----------HAQG-PDTDRLSSVLNA--DTIFDWIIIT 109 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~-----------~~~~-~~~~~l~~~l~~--l~~~d~IiFT 109 (263)
++..+.+++|+|.....-...+.+.|.+.|.+|..+-.-. .... .+... ...+.. +..+|+||.+
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~-~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAE-FETLKECGMEKADMVFAF 91 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTS-HHHHHTTTGGGCSEEEEC
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCC-HHHHHHcCcccCCEEEEE
Confidence 4567789999999765556788999999998776542100 0000 01111 112222 4578999988
Q ss_pred CHHH--HHHHHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 110 SPEA--GSVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 110 S~~a--V~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.++. .......+.... ...+++ +-|+...+.|++. |.. .+.|....+..+++.|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~~ 151 (155)
T 2g1u_A 92 TNDDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFIIG 151 (155)
T ss_dssp SSCHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHHC
T ss_pred eCCcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHhc
Confidence 7653 233333344322 234444 4478888889888 998 677877777777766653
No 78
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=89.47 E-value=0.27 Score=41.54 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=90.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.+...-...++.+ .++++++++....
T Consensus 29 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-----~~iPvV~~~~~~~--- 95 (288)
T 2qu7_A 29 ISHECQKHHLHVAVAS---S--EENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW-----LKIPIMTLDRELE--- 95 (288)
T ss_dssp HHHHHGGGTCEEEEEE---C--TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-----GGSCEEEESCCCS---
T ss_pred HHHHHHHCCCEEEEEe---C--CCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh-----cCCCEEEEecccC---
Confidence 4455667798765432 1 1222211122221 2579999997654211111111 3678899886431
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeee--cc
Q 024727 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY--TT 212 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY--~~ 212 (263)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.|.... .-+.+.|++.|+++....++ ..
T Consensus 96 -~~------~~~~-V~~d~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~ 165 (288)
T 2qu7_A 96 -ST------SLPS-ITVDNEEAAYIATKRVLES--TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQ 165 (288)
T ss_dssp -SC------CCCE-EEECHHHHHHHHHHHHHTS--SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS
T ss_pred -CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccC
Confidence 12 2322 22222 2234555666654 34789999887542 33556788888876432233 21
Q ss_pred cc----CCCChHH-HHHHh-CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 213 EP----VHHVDQT-VLKQA-LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 213 ~~----~~~~~~~-~~~~l-~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
.. ......+ +.+.+ .++|+|+..+-..+. .+++.+.+.. ..++.|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d 223 (288)
T 2qu7_A 166 QLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLL-GALQAIKESEKEIKKDVIIVGFD 223 (288)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHH-HHHHHHHHSSCCBTTTBEEEEES
T ss_pred CccccCCHHHHHHHHHHHHhcCCCEEEECCcHHHH-HHHHHHHHhCCCCCCceEEEEeC
Confidence 11 0000111 22222 278999999888777 6666665443 2466777664
No 79
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=88.48 E-value=2.2 Score=35.63 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++.... . ..+.+ .++..+ ...+|.||+.... .....++.+.+. ++++++++..
T Consensus 23 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 92 (290)
T 2fn9_A 23 TAKQRAEQLGYEATIFD---S--QNDTAKESAHFDAII--AAGYDAIIFNPTDADGSIANVKRAKEA---GIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHH--HTTCSEEEECCSCTTTTHHHHHHHHHT---TCCEEEESSC
T ss_pred HHHHHHHHcCCEEEEeC---C--CCCHHHHHHHHHHHH--HcCCCEEEEecCChHHHHHHHHHHHHC---CCeEEEEecC
Confidence 34566778898776432 1 12222 123223 2579999987543 222344444443 5788888864
Q ss_pred HHHHHHHhhhhcCCCCcee-ecCCCC-CHHHHHHHhccCCC----CCcE--EEEEcCCCCc-------hhHHHHHHhC-C
Q 024727 138 TASIFEEVIQSSKCSLDVA-FSPSKA-TGKILASELPKNGK----KKCT--VLYPASAKAS-------NEIEEGLSNR-G 201 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~-~~p~~~-t~e~L~~~l~~~~~----~~~~--vL~~~g~~~~-------~~L~~~L~~~-G 201 (263)
.. .. +.... +..+.+ .+..+++.|.+... ..++ ++++.|.... .-+.+.|++. |
T Consensus 93 ~~----~~------~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g 162 (290)
T 2fn9_A 93 IN----AR------GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPE 162 (290)
T ss_dssp CS----CS------SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTT
T ss_pred CC----CC------CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCC
Confidence 21 11 21111 223322 23445555655411 1245 8888886542 2355667777 7
Q ss_pred CeeeEEeeeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEE
Q 024727 202 FEVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI 261 (263)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~I 261 (263)
+++.. ++..........+ +.+.+ .++|+|+..+-..+. .+++.+.+....++.|+++
T Consensus 163 ~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~dv~vig~ 223 (290)
T 2fn9_A 163 FKMVA--QQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMAL-GAMKACEAAGRTDIYIFGF 223 (290)
T ss_dssp EEEEE--EEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHTTCTTCEEECC
T ss_pred CEEEE--eccCCCCHHHHHHHHHHHHHhCCCCcEEEECCchHHH-HHHHHHHHCCCCCeEEEEe
Confidence 76543 2221111111111 22222 368999999888777 6776665433335555544
No 80
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=88.47 E-value=4.7 Score=30.02 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeC--CCchHHHHHHhcCCCccEEEEeCHHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~------------~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (263)
.+++|+|+....-...+.+.|.+.|+++..+-.- ..... .+.+.++. . ...++|++|.+.++--
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-L-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-S-CCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-C-CcccCCEEEEecCCHH
Confidence 4578888876545677888999899887754221 11111 11111111 1 2467899999877432
Q ss_pred HH--HHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 115 SV--FLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 115 ~~--~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
.. ....+++.+ ..+++ +-++.-.+.|++. |.+..+.|+...+..+.+.+.
T Consensus 83 ~n~~~~~~a~~~~--~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 83 FNLKILKALRSVS--DVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHHC--CCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 22 233344444 23343 4467777889998 998777787777777776554
No 81
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=88.27 E-value=4.2 Score=29.84 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-----------E--eeeC--CCchHHHHHHhcCCCccEEEEeCHHHH
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-----------Q--HAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~-----------~--~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (263)
+++|+|+-...-...+.+.|.+.|.++..+-.- . .... .+.+.+... .+.++|.|+.+.+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA--GIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT--TTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc--CcccCCEEEEeeCCch
Confidence 467777755444566777777777666543210 0 0000 011111111 2467899988866432
Q ss_pred --HHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 115 --SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 115 --~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
......++..+...+-+.+-++...+.|++. |+...+.|+...+..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~~ 135 (140)
T 1lss_A 82 VNLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLIE 135 (140)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHhc
Confidence 2233344444433333345577888888888 997767777666666665553
No 82
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=88.01 E-value=2.1 Score=37.35 Aligned_cols=169 Identities=9% Similarity=0.041 Sum_probs=87.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~-aV~~~~~~l~~~~~~~~~i~aVG~~T 138 (263)
.+.+.++++|+++..... . ..+.+ .++..+ ...+|.||+.++. .-......+.. .+++++++|...
T Consensus 82 gi~~~a~~~g~~~~~~~~---~-~~~~~~~~~~l~~l~--~~~vdGiIi~~~~~~~~~~~~~~~~---~~iPvV~i~~~~ 152 (349)
T 1jye_A 82 AILSRADQLGASVVVSMV---E-RSGVEACKTAVHNLL--AQRVSGLIINYPLDDQDAIAVEAAC---TNVPALFLDVSD 152 (349)
T ss_dssp HHHHHHHHTTCEEEEEEC---C-SSSHHHHHHHHHHHH--TTTCSCEEEESCCCHHHHHHHHHHT---TTSCEEESSSCT
T ss_pred HHHHHHHHcCCEEEEEeC---C-CCcHHHHHHHHHHHH--HCCCCEEEEecCCCChhHHHHHHhh---CCCCEEEEcccC
Confidence 345566788988764321 1 11112 122222 3579999987432 11222222222 367899998531
Q ss_pred HHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeee
Q 024727 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (263)
.. ++.. +..+.+ .....++.|.+. ..++|.++.|.... .-+.+.|++.|+.+.. ++
T Consensus 153 -----~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~ 216 (349)
T 1jye_A 153 -----QT------PINS-IIFSHEDGTRLGVEHLVAL--GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--ER 216 (349)
T ss_dssp -----TS------SSCE-EEECHHHHHHHHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EE
T ss_pred -----CC------CCCE-EEEchHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--cc
Confidence 12 3332 222322 233445566554 34789999987542 2356778888876533 22
Q ss_pred ccccCCCChH---H-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEE
Q 024727 211 TTEPVHHVDQ---T-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACI 261 (263)
Q Consensus 211 ~~~~~~~~~~---~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~I 261 (263)
.. .+..+ + +.+.+ ..+|+|+..+-..+- ..++.+.+.. ..++.|+++
T Consensus 217 ~~---~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disvvGf 273 (349)
T 1jye_A 217 EG---DWSAMSGFQQTMQMLNEGIVPTAMLVANDQMAL-GAMRAITESGLRVGADISVVGY 273 (349)
T ss_dssp EC---CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEECS
T ss_pred cC---CCChHHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCcEEEEEE
Confidence 21 12221 1 22222 368999999887776 6666665432 235555543
No 83
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=87.97 E-value=0.47 Score=39.90 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=90.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~a--V~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++.....- ...+.+ .++..+ ...+|.||+.+... +...++.+.+ .+++++.+|..
T Consensus 28 gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~--~~~vdgii~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 99 (289)
T 3brs_A 28 GAQMAAKEYEIKLEFMAPE---KEEDYLVQNELIEEAI--KRKPDVILLAAADYEKTYDAAKEIKD---AGIKLIVIDSG 99 (289)
T ss_dssp HHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHH--HTCCSEEEECCSCTTTTHHHHTTTGG---GTCEEEEESSC
T ss_pred HHHHHHHHcCCEEEEecCC---CCCCHHHHHHHHHHHH--HhCCCEEEEeCCChHHhHHHHHHHHH---CCCcEEEECCC
Confidence 3455667789876543220 011211 122222 25799999876432 1123332222 36889999853
Q ss_pred HHHHHHHhhhhcCCC-CceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEe
Q 024727 138 TASIFEEVIQSSKCS-LDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G-~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~ 208 (263)
.. .. + +.. +..+.+ .+..+++.|.+.....++|.++.|.... .-+.+.|++.|..+...
T Consensus 100 ~~----~~------~~~~~-V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~- 167 (289)
T 3brs_A 100 MK----QD------IADIT-VATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI- 167 (289)
T ss_dssp CS----SC------CCSEE-EECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEE-
T ss_pred CC----CC------cceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEee-
Confidence 21 11 2 222 333322 3345556666642124799999987542 33566777787664332
Q ss_pred eeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCC-CCceEEEEC
Q 024727 209 TYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIA 262 (263)
Q Consensus 209 vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~-~~~~i~~IG 262 (263)
+..........+ +.+.+ .++|+|+.++-..+. ..++.+.+... .++.|++++
T Consensus 168 -~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~~di~vvg~d 224 (289)
T 3brs_A 168 -YYCDSNYDKAYDGTVELLTKYPDISVMVGLNQYSAT-GAARAIKDMSLEAKVKLVCID 224 (289)
T ss_dssp -EECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH-HHHHHHHHTTCTTTSEEEEEE
T ss_pred -ecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchH-HHHHHHHhcCCCCCEEEEEEC
Confidence 221111111111 22222 368899988887777 66666654332 356666654
No 84
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=87.39 E-value=3.8 Score=30.81 Aligned_cols=112 Identities=11% Similarity=0.141 Sum_probs=68.1
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHH
Q 024727 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSV 116 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~------------~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~ 116 (263)
.+|+|.....-...+.+.|.+.|.++..+-.- ..... |... ...+. .+.+.|++|.+.++....
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~g-d~~~-~~~l~~a~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLG-NAAN-EEIMQLAHLECAKWLILTIPNGYEA 85 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEES-CTTS-HHHHHHTTGGGCSEEEECCSCHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEEC-CCCC-HHHHHhcCcccCCEEEEECCChHHH
Confidence 45777765555678888888888877654321 11111 1000 11222 246789999887765443
Q ss_pred H--HHHHHHcCCCCcEEEE--eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh
Q 024727 117 F--LEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (263)
Q Consensus 117 ~--~~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l 171 (263)
. ...++... .+.++++ -.+...+.|++. |.+..+.|+...++.+++.+
T Consensus 86 ~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l 137 (140)
T 3fwz_A 86 GEIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELL 137 (140)
T ss_dssp HHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHh
Confidence 3 33334333 3456665 477888899998 99987888777777777655
No 85
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=87.11 E-value=1.6 Score=37.83 Aligned_cols=175 Identities=9% Similarity=-0.034 Sum_probs=90.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+...+.++. ...+|.||+.....-......+.+. +++++.+|...
T Consensus 83 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~--- 151 (339)
T 3h5o_A 83 GIETVLDAAGYQMLIGNS-----HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQH---ALPVVYMMDLA--- 151 (339)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHHT---TCCEEEEESCC---
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhcC---CCCEEEEeecC---
Confidence 456677788988764321 1122211122211 3679999998754333444444443 56788886421
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCC------chhHHHHHHhCCCeee-EEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVV-RLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~------~~~L~~~L~~~G~~v~-~~~vY~~~ 213 (263)
.. +.. .+..+.+ .+...++.|.+. ..++|.++.|... ..-+.+.|++.|.... ...++...
T Consensus 152 --~~------~~~-~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 220 (339)
T 3h5o_A 152 --DD------GRC-CVGFSQEDAGAAITRHLLSR--GKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQP 220 (339)
T ss_dssp --SS------SCC-EEECCHHHHHHHHHHHHHHT--TCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSC
T ss_pred --CC------CCe-EEEECHHHHHHHHHHHHHHC--CCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCC
Confidence 11 111 2223322 234455666654 3478999988753 1235667888887321 11122111
Q ss_pred cCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEE
Q 024727 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACI 261 (263)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~I 261 (263)
.......+ +.+.+ .++|+|+..+-..+- ..++.+.+.. ..++.|+++
T Consensus 221 ~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disvvgf 274 (339)
T 3h5o_A 221 SSMQMGADMLDRALAERPDCDALFCCNDDLAI-GALARSQQLGIAVPERLAIAGF 274 (339)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECS
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEECChHHHH-HHHHHHHHcCCCCCCCEEEEEE
Confidence 11111112 22222 478999999888777 6766665443 235556554
No 86
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=87.01 E-value=0.35 Score=41.13 Aligned_cols=166 Identities=8% Similarity=-0.010 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+.....++. ...+|.||+.+...-. . +......+++++++|.....
T Consensus 35 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~---~~~~~~~~iPvV~~~~~~~~- 104 (301)
T 3miz_A 35 GIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-V---DPESGDVSIPTVMINCRPQT- 104 (301)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-C---CCCCTTCCCCEEEEEEECSS-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH-H---HHHHHhCCCCEEEECCCCCC-
Confidence 466777888988875432 1122211122211 2579999987654221 1 11112247889998864311
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeecc-
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT- 212 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~- 212 (263)
.. ++.. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 105 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 173 (301)
T 3miz_A 105 --RE------LLPS-IEPDDYQGARDLTRYLLER--GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM 173 (301)
T ss_dssp --TT------SSCE-EEECHHHHHHHHHHHHHTT--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE
T ss_pred --CC------CCCE-EeeChHHHHHHHHHHHHHc--CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC
Confidence 00 1221 222322 334555666664 34789999987653 3355678888887754444443
Q ss_pred --ccCCCCh---HHHHHHh---CCCCEEEEeCHHHHHHHHHHhcccc
Q 024727 213 --EPVHHVD---QTVLKQA---LSIPVVAVASPSAVRSSWVNLISDT 251 (263)
Q Consensus 213 --~~~~~~~---~~~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~ 251 (263)
....... +.+.+.+ ..+|+|+..+-..+. ..++.+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~ 219 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAI-QIYIAAMAL 219 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHH-HHHHHHHTT
T ss_pred CCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHH-HHHHHHHHc
Confidence 2222222 2233333 378999999988777 777776654
No 87
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=86.59 E-value=4.6 Score=30.70 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE----------------EeeeCC--CchHHHHHHhcCCCccEEEEeCH
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI----------------QHAQGP--DTDRLSSVLNADTIFDWIIITSP 111 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~----------------~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~ 111 (263)
+++|+|.....-...+.+.|.+.|.++..+--- .+.... +.+.+.+. .+.+.|++|.+.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCEEEEecC
Confidence 467888866555677888888888877754221 111111 11222221 3678999998876
Q ss_pred HHHHHH-H-HHHHHcCCCCcEEEE--eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 112 EAGSVF-L-EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 112 ~aV~~~-~-~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
+--... . ..+++.. +..++++ -++...+.|++. |....+.|....++.+.+.+.
T Consensus 81 ~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 81 NDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp CHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 433222 2 2223322 2345554 477778889888 998667776666666666554
No 88
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=86.01 E-value=0.38 Score=42.35 Aligned_cols=146 Identities=9% Similarity=0.031 Sum_probs=81.7
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCC
Q 024727 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKK 178 (263)
Q Consensus 100 l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~ 178 (263)
...+|.||+.+...-...++.+.+. +++++++|... ... ++.. +..+.+ .+...++.|.+. ..
T Consensus 126 ~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~----~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~ 189 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGDPHIDAIRAR---GLPAVIADQPA----REE------GMPF-IAPNNRKAIAPAAQALIDA--GH 189 (366)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHHH---TCCEEEESSCC----SCT------TCCE-EEECHHHHTHHHHHHHHHT--TC
T ss_pred hCCCCEEEEecCCCChHHHHHHHHC---CCCEEEECCcc----CCC------CCCE-EEeChHHHHHHHHHHHHHC--CC
Confidence 3679999998764333444444443 57899998632 112 3332 223322 234455666664 34
Q ss_pred cEEEEEcCC---------C---------------CchhHHHHHHhCCCeeeEEeeeccccCC-CChHH-HHHHh---CCC
Q 024727 179 CTVLYPASA---------K---------------ASNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQT-VLKQA---LSI 229 (263)
Q Consensus 179 ~~vL~~~g~---------~---------------~~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~-~~~~l---~~~ 229 (263)
++|.++.+. . ...-+.+.|++.|+.+....++...... ....+ +.+.+ ..+
T Consensus 190 r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 269 (366)
T 3h5t_A 190 RKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDL 269 (366)
T ss_dssp CSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTC
T ss_pred CcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCC
Confidence 789988832 1 1234667788888876543333321111 11111 22222 478
Q ss_pred CEEEEeCHHHHHHHHHHhccccC---CCCceEEEEC
Q 024727 230 PVVAVASPSAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 230 d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
|+|+.++-..+- ..++.+.+.. ..++.|++++
T Consensus 270 ~ai~~~nD~~A~-g~~~al~~~G~~vP~disvigfD 304 (366)
T 3h5t_A 270 TAVLCTVDALAF-GVLEYLKSVGKSAPADLSLTGFD 304 (366)
T ss_dssp CEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred cEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEEC
Confidence 999999988777 6666665543 2467777664
No 89
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=86.00 E-value=1.5 Score=37.60 Aligned_cols=174 Identities=12% Similarity=0.054 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeCh
Q 024727 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~-p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
.+.+.++++|+++... +. ..+.+ .++..+ ...+|.||+.+.. ++...++.+.+. ++++++++.
T Consensus 24 g~~~~~~~~g~~~~~~~~~-----~~d~~~q~~~i~~li--~~~vdgiii~~~~~~~~~~~~~~a~~~---gipvV~~d~ 93 (316)
T 1tjy_A 24 GAQEAGKALGIDVTYDGPT-----EPSVSGQVQLVNNFV--NQGYDAIIVSAVSPDGLCPALKRAMQR---GVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SCCHHHHHHHHHHHH--HTTCSEEEECCSSSSTTHHHHHHHHHT---TCEEEEESS
T ss_pred HHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHH--HcCCCEEEEeCCCHHHHHHHHHHHHHC---cCEEEEecC
Confidence 3455667789776543 11 11221 233333 2579999987542 334445545443 688999875
Q ss_pred hHHHHHHHhhhhcCCCCceee-cCCCC-CHHHHHHHhccCCC-CCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeE
Q 024727 137 GTASIFEEVIQSSKCSLDVAF-SPSKA-TGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVR 206 (263)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~-~p~~~-t~e~L~~~l~~~~~-~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~ 206 (263)
.... . +....+ ..+.. .+....+.|.+... ..++|.++.|.... .-+.+.|++.+..+..
T Consensus 94 ~~~~----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~ 163 (316)
T 1tjy_A 94 DTKP----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEI 163 (316)
T ss_dssp CCCG----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCC----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEE
Confidence 3211 1 111212 22222 23444555555221 34789999987543 2345566555323322
Q ss_pred EeeeccccCCCChH---H-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEE
Q 024727 207 LNTYTTEPVHHVDQ---T-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI 261 (263)
Q Consensus 207 ~~vY~~~~~~~~~~---~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~I 261 (263)
+..+.. .+..+ + +.+.+ .++++|+..+-..+. ..++.+.+....++.|+.+
T Consensus 164 ~~~~~~---~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~-g~~~al~~~G~~dv~VvG~ 221 (316)
T 1tjy_A 164 VTTQFG---YNDATKSLQTAEGIIKAYPDLDAIIAPDANALP-AAAQAAENLKRNNLAIVGF 221 (316)
T ss_dssp EEEEEC---TTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHH-HHHHHHHHTTCCSCEEEEB
T ss_pred EEeccC---CCCHHHHHHHHHHHHHhCCCCCEEEECCCccHH-HHHHHHHHcCCCCEEEEEe
Confidence 333222 22221 1 22222 368999888766666 5555554432134555544
No 90
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=85.12 E-value=1.4 Score=38.00 Aligned_cols=183 Identities=13% Similarity=0.054 Sum_probs=88.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEe-Chh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV-GAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~-aV~~~~~~l~~~~~~~~~i~aV-G~~ 137 (263)
.+.+.++++|+++..... ....-.+.+ .++..+ ...+|.||+.+.. .....++.+.+. +++++++ +..
T Consensus 65 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~---~ip~V~~~~~~ 138 (342)
T 1jx6_A 65 SFEKRLYKLNINYQLNQV-FTRPNADIKQQSLSLMEAL--KSKSDYLIFTLDTTRHRKFVEHVLDS---TNTKLILQNIT 138 (342)
T ss_dssp HHHHHHHHTTCCEEEEEE-ECCTTCCHHHHHHHHHHHH--HTTCSEEEECCSSSTTHHHHHHHHHH---CSCEEEEETCC
T ss_pred HHHHHHHHcCCeEEEEec-CCCCccCHHHHHHHHHHHH--hcCCCEEEEeCChHhHHHHHHHHHHc---CCCEEEEecCC
Confidence 445667788988764321 111001222 223333 2579999984322 223344444443 4566666 532
Q ss_pred HH-HHH-HHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc------hhHHHHHHhCCCeeeEEe
Q 024727 138 TA-SIF-EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLN 208 (263)
Q Consensus 138 Ta-~~L-~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~------~~L~~~L~~~G~~v~~~~ 208 (263)
.. ..+ ... ++.. +..+.+ .+..+++.|.+.....++|.++.|.... .-+.+.|++.|. +....
T Consensus 139 ~~~~~~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~ 210 (342)
T 1jx6_A 139 TPVREWDKHQ------PFLY-VGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQS 210 (342)
T ss_dssp SCBGGGTTSC------CSEE-EECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEE
T ss_pred CcccccccCC------CceE-EecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEE
Confidence 10 000 012 3322 233332 2345566666642124899999987642 335567777776 44333
Q ss_pred eeccccCCCChHH-HHHHh---CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEE
Q 024727 209 TYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI 261 (263)
Q Consensus 209 vY~~~~~~~~~~~-~~~~l---~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~I 261 (263)
++..........+ +.+.+ .++|+|+..+-..+. ..++.+.+....++.|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~g~~di~vvg~ 266 (342)
T 1jx6_A 211 AYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVAL-GAVDALAELGREDIMINGW 266 (342)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHH-HHHHHHHHHTCTTSEEBCS
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCccEEEECCChhHH-HHHHHHHHcCCCCcEEEEe
Confidence 3322111111111 22222 368999999988777 6666665432234555443
No 91
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=84.17 E-value=7.9 Score=30.24 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhC-CCcEEEeceE------------EeeeCCCchHHHHHHhc---CCCccEEEEeC
Q 024727 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLI------------QHAQGPDTDRLSSVLNA---DTIFDWIIITS 110 (263)
Q Consensus 47 ~l~g~~ILitr~~~~~~~l~~~L~~~-G~~v~~~p~~------------~~~~~~~~~~l~~~l~~---l~~~d~IiFTS 110 (263)
++.+++|+|.....-...+.+.|.+. |++|..+-.- ..... |... ...+.. +.++|+||.++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~g-d~~~-~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISG-DATD-PDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEEC-CTTC-HHHHHTBCSCCCCCEEEECC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEc-CCCC-HHHHHhccCCCCCCEEEEeC
Confidence 46688999997655567889999998 9887754210 00100 1111 112222 46789999977
Q ss_pred HHH--HHHHHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 111 PEA--GSVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 111 ~~a--V~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
++. .......++..+. ..+++ +.++...+.|++. |....+.|....+..+.+.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~-~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~~ 173 (183)
T 3c85_A 114 PHHQGNQTALEQLQRRNY-KGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVCK 173 (183)
T ss_dssp SSHHHHHHHHHHHHHTTC-CSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHHH
Confidence 643 3334444555442 34454 4577788889998 9987677766666666665543
No 92
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=84.13 E-value=19 Score=30.83 Aligned_cols=136 Identities=12% Similarity=0.008 Sum_probs=78.4
Q ss_pred CCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCC-CceeecCCC-CCHHHHHHHhccCCCC
Q 024727 101 TIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGKK 177 (263)
Q Consensus 101 ~~~d~Ii-FTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~t~e~L~~~l~~~~~~ 177 (263)
++.+.|| ..+..........+.+. +++++..+.. ...+... + ....+.|.. .....+++.+.+.. .
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~-~~~~~~~------~~~~f~~~~~~~~~~~~~~~~l~~~~-g 148 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPAST-NPLVTQG------RKFVSRVCFIDPFQGAAMAVFAYKNL-G 148 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCC-CGGGTTT------CSSEEESSCCHHHHHHHHHHHHHHTS-C
T ss_pred CCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCC-CccccCC------CCCEEEEeCCcHHHHHHHHHHHHHhc-C
Confidence 4589998 45566666677766665 5677776542 2222222 1 111122322 22345566664432 3
Q ss_pred CcEEEEEcCCCC------chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEE-eCHHHHHHHHHHhc
Q 024727 178 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLI 248 (263)
Q Consensus 178 ~~~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvF-tS~s~v~~~~~~~~ 248 (263)
.++|.++.+... .+.+.+.|++.|+++.... |..... ... .....+ .++|+|++ .+...+. .+++.+
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~~~-d~~-~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~ 224 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSGDQ-DFS-AQLSVAMSFNPDAIYITGYYPEIA-LISRQA 224 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTTCC-CCH-HHHHHHHHTCCSEEEECSCHHHHH-HHHHHH
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCCCc-cHH-HHHHHHHhcCCCEEEEccchhHHH-HHHHHH
Confidence 478888854221 2557788899999887666 665322 222 223333 58999988 7888787 787776
Q ss_pred ccc
Q 024727 249 SDT 251 (263)
Q Consensus 249 ~~~ 251 (263)
.+.
T Consensus 225 ~~~ 227 (366)
T 3td9_A 225 RQL 227 (366)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 93
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=84.06 E-value=11 Score=28.03 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=65.5
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (263)
Q Consensus 48 l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~ 122 (263)
-.+++||+.-... ....+.+.|++.|+++... .+.++....+. ...+|.|++-- .++.+.+ +.+.
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~-~~lr 74 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFLS-LTRPDLIISDVLMPEMDGYALC-RWLK 74 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHHH-HHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHH-HHHH
Confidence 3467899987654 3567888899888765432 23333344442 35799988863 2455433 4455
Q ss_pred HcC-CCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 123 EAG-TPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 123 ~~~-~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+.. ..+++++++ +... ...+.+. |.. ++..+..+.+.|...+...
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (154)
T 3gt7_A 75 GQPDLRTIPVILLTILSDPRDVVRSLEC------GAD-DFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp HSTTTTTSCEEEEECCCSHHHHHHHHHH------CCS-EEEESSCCHHHHHHHHHHH
T ss_pred hCCCcCCCCEEEEECCCChHHHHHHHHC------CCC-EEEeCCCCHHHHHHHHHHH
Confidence 443 246666655 3332 3334455 765 4677778888888777653
No 94
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=83.11 E-value=7.1 Score=33.59 Aligned_cols=146 Identities=18% Similarity=0.032 Sum_probs=82.1
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHH-hhhhcCCCCceeecCCC-CCHHHHHHHhccCCCC
Q 024727 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 177 (263)
Q Consensus 101 ~~~d~IiF-TS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~ 177 (263)
...+.||- .+..........+.+. +++++..+..+ ..+.. . ..-..+.|.. .....+++.+.+. .
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~--g 138 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGT-SIITERS------PYIVRTSFTLAQSSIIIGDWAAKN--G 138 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCC-GGGGGGC------TTEEESSCCHHHHHHHHHHHHHHT--T
T ss_pred CCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCC-hhhccCC------CCEEEecCChHHHHHHHHHHHHHc--C
Confidence 67899883 4556666666766665 46677665322 12221 2 2211122322 2234566666654 3
Q ss_pred CcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEE-eCHHHHHHHHHHhcc
Q 024727 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLIS 249 (263)
Q Consensus 178 ~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvF-tS~s~v~~~~~~~~~ 249 (263)
.++|.++..+.. .+.+.+.|++.|+++.....|.....+ .. .....+ .++|+|++ .+...+. .+++.+.
T Consensus 139 ~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d-~~-~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~~ 215 (368)
T 4eyg_A 139 IKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPD-FA-PFLQRMKDAKPDAMFVFVPAGQGG-NFMKQFA 215 (368)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCC-CH-HHHHHHHHHCCSEEEEECCTTCHH-HHHHHHH
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCc-HH-HHHHHHHhcCCCEEEEeccchHHH-HHHHHHH
Confidence 478888875432 356778899999988766666543322 22 223223 37898887 5666666 6776665
Q ss_pred ccCCC--CceEEEE
Q 024727 250 DTEQW--SNSVACI 261 (263)
Q Consensus 250 ~~~~~--~~~i~~I 261 (263)
+.... +++++..
T Consensus 216 ~~g~~~~~v~~~~~ 229 (368)
T 4eyg_A 216 ERGLDKSGIKVIGP 229 (368)
T ss_dssp HTTGGGTTCEEEEE
T ss_pred HcCCCcCCceEEec
Confidence 43221 2556544
No 95
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=82.98 E-value=13 Score=31.75 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=92.3
Q ss_pred CeEEEeCCCC------ChHHHHHHHHhCCCc----EEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHH
Q 024727 51 PKVVVTRERG------KNGKLIKALAKHRID----CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFL 118 (263)
Q Consensus 51 ~~ILitr~~~------~~~~l~~~L~~~G~~----v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~ 118 (263)
.+|-|+.-.+ -.+-+.+.|++.|+. +... +.... .|...+....++ -.++|.|+-.+..+.....
T Consensus 9 ~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~--~~~a~-gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~~ 85 (302)
T 3lkv_A 9 AKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFD--YKTAQ-GNPAIAVQIARQFVGENPDVLVGIATPTAQALV 85 (302)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEE--EEECT-TCHHHHHHHHHHHHTTCCSEEEEESHHHHHHHH
T ss_pred ceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEE--EEeCC-CCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHHH
Confidence 4677775432 123477888888863 4321 22211 233322222222 3679998877777776665
Q ss_pred HHHHHcCCCCcEEEEeCh---hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC------
Q 024727 119 EAWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------ 189 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~---~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~------ 189 (263)
+. . .+++|+..|- ..+...... ...|-++.-+.+....+..++.+.+.....+++.++.....
T Consensus 86 ~~---~--~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~ 157 (302)
T 3lkv_A 86 SA---T--KTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HH---C--SSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred hh---c--CCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHH
Confidence 42 1 2455554432 211111111 01133332333445566677777776655678877755432
Q ss_pred chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHH-hCCCCEEEEeCHHHHH
Q 024727 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVR 241 (263)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-l~~~d~vvFtS~s~v~ 241 (263)
.+.+.+.+++.|+++.+..+.... ...+..+. ..+.|++....-..+.
T Consensus 158 ~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~~~~l~~~~d~i~~~~d~~~~ 206 (302)
T 3lkv_A 158 MELLKLSAAKHGIKLVEATALKSA----DVQSATQAIAEKSDVIYALIDNTVA 206 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGG----GHHHHHHHHHTTCSEEEECSCHHHH
T ss_pred HHHHHHHHHHcCCEEEEEecCChH----HHHHHHHhccCCeeEEEEeCCcchh
Confidence 345677788899987665554332 22222222 3688988776655544
No 96
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=81.77 E-value=2.1 Score=34.90 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCC------------chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeC-------HH
Q 024727 178 KCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PS 238 (263)
Q Consensus 178 ~~~vL~~~g~~~------------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS-------~s 238 (263)
..+||++-|... .+.+.+.+++.|.+|..+.+|+ ..+.+++.+.+...|.|+|.+ |.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~----~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADS----DYDVKAEVQNFLWADVVIWQMPGWWMGAPW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSS----CCCHHHHHHHHHHCSEEEEEEECBTTBCCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCc----cccHHHHHHHHHhCCEEEEECCccccCCCH
Confidence 367777766544 1345666777799999999986 233445566677999999988 56
Q ss_pred HHHHHHHHh
Q 024727 239 AVRSSWVNL 247 (263)
Q Consensus 239 ~v~~~~~~~ 247 (263)
.++ .|++.
T Consensus 88 ~LK-~~iDr 95 (204)
T 2amj_A 88 TVK-KYIDD 95 (204)
T ss_dssp HHH-HHHHH
T ss_pred HHH-HHHHH
Confidence 888 88884
No 97
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=81.77 E-value=4 Score=35.24 Aligned_cols=165 Identities=10% Similarity=0.080 Sum_probs=83.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~-~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (263)
-+.+.++++|+++..... ....+.. .++... -..+|.||+++..--+.+.....+. ++++++.++.....
T Consensus 28 Gi~~~~~~~g~~~~~~~~---~~~~~~~~~l~~l~--~~~~dgIi~~~~~~~~~~~~~a~~~--p~~p~v~id~~~~~-- 98 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA---STDAEYVPSLSAFA--DENMGLVVACGSFLVEAVIETSARF--PKQKFLVIDAVVQD-- 98 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC---CSGGGHHHHHHHHH--HTTCSEEEEESTTTHHHHHHHHHHC--TTSCEEEESSCCCS--
T ss_pred HHHHHHHHhCCeEEEEeC---CCHHHHHHHHHHHH--HcCCCEEEECChhHHHHHHHHHHHC--CCCEEEEEcCccCC--
Confidence 455667788987654422 1111111 122222 2579999999864434444433332 36788888753210
Q ss_pred HHhhhhcCCCCceeecCCCCCHHHHH----HHhccCCCCC--cEEEEEcCCCCc------hhHHHHHHhCCCeeeEEeee
Q 024727 143 EEVIQSSKCSLDVAFSPSKATGKILA----SELPKNGKKK--CTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~t~e~L~----~~l~~~~~~~--~~vL~~~g~~~~------~~L~~~L~~~G~~v~~~~vY 210 (263)
.. ++.. +..+.+.+.-++ ..|.+ .| ++|.++.|.... .-+.+.+++.|.++....+|
T Consensus 99 -~~------~~~~-v~~d~~~~~~lag~~a~~l~~---~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~ 167 (318)
T 2fqx_A 99 -RD------NVVS-AVFGQNEGSFLVGVAAALKAK---EAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEV 167 (318)
T ss_dssp -CT------TEEE-EEECHHHHHHHHHHHHHHHHH---HTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CC------CEEE-EEechHHHHHHHHHHHHHHhc---cCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 12 2322 233333333332 34433 34 599999886431 22456677778777666666
Q ss_pred ccccCC-CChHHH-HHHh-CCCCEEEEeCHHHHHHHHHHhcc
Q 024727 211 TTEPVH-HVDQTV-LKQA-LSIPVVAVASPSAVRSSWVNLIS 249 (263)
Q Consensus 211 ~~~~~~-~~~~~~-~~~l-~~~d~vvFtS~s~v~~~~~~~~~ 249 (263)
...... ....+. .+.+ ..+|+|+..+-..+- ..++.+.
T Consensus 168 ~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~-Gv~~a~~ 208 (318)
T 2fqx_A 168 ANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGN-GVIKEAR 208 (318)
T ss_dssp CSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGHH-HHHHHHH
T ss_pred ccCccCHHHHHHHHHHHHHCCCcEEEECCCCCch-HHHHHHH
Confidence 432211 111122 2222 478999888865544 4444443
No 98
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=81.61 E-value=24 Score=30.18 Aligned_cols=147 Identities=15% Similarity=0.058 Sum_probs=81.8
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCC
Q 024727 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (263)
Q Consensus 101 ~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~ 178 (263)
...|.||.. +..........+.+. +++++..+..+ ..+.... .......+.+.. .-...+++.+.+. ..
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~--g~ 151 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIARED---GIPTIVPNAGA-DIITRAM---CAPNVFRTSFANGQIGRATGDAMIKA--GL 151 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---CCCEEESSCCC-GGGGTTT---CCTTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCceEEEcCCccHHHHHHHHHHHHc---CceEEecCCCC-hhhcccC---CCCCEEEeeCChHhHHHHHHHHHHHc--CC
Confidence 378999865 444555566666655 46677766322 2222210 001111122322 2335556666654 35
Q ss_pred cEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEE-eCHHHHHHHHHHhccc
Q 024727 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLISD 250 (263)
Q Consensus 179 ~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvF-tS~s~v~~~~~~~~~~ 250 (263)
++|.++..+.. .+.+.+.|++.|+++.....|..... . .....+.+ .++|+|++ .+...+. .+++.+.+
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-d-~~~~~~~l~~~~~dai~~~~~~~~a~-~~~~~~~~ 228 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDV-E-FQSALAEIASLKPDCVYAFFSGGGAL-KFIKDYAA 228 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC-C-CHHHHHHHHHHCCSEEEEECCTHHHH-HHHHHHHH
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCc-c-HHHHHHHHHhcCCCEEEEecCcchHH-HHHHHHHH
Confidence 78888865542 35677889999998866555653322 2 22223323 37898888 7777777 77777655
Q ss_pred cCCCCceEEE
Q 024727 251 TEQWSNSVAC 260 (263)
Q Consensus 251 ~~~~~~~i~~ 260 (263)
.. .+++++.
T Consensus 229 ~g-~~vp~~~ 237 (375)
T 4evq_A 229 AN-LGIPLWG 237 (375)
T ss_dssp TT-CCCCEEE
T ss_pred cC-CCceEEe
Confidence 42 2355554
No 99
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=81.32 E-value=6 Score=33.34 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=54.5
Q ss_pred cEEEEEcCCCC--------chhHHHHHHhCCCeeeEEeeeccccCCCC------hHHHHHHhCCCCEEEEeCH-------
Q 024727 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASP------- 237 (263)
Q Consensus 179 ~~vL~~~g~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~------~~~~~~~l~~~d~vvFtS~------- 237 (263)
.+|+++.|... -+.+.+.+++.|++|..+.+++.-..... ..++.+.+...|+|+|.||
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sip 114 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMT 114 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCcc
Confidence 58999888753 13455667778998888887763211111 2334555679999999995
Q ss_pred HHHHHHHHHhcccc-----CCCCceEEEEC
Q 024727 238 SAVRSSWVNLISDT-----EQWSNSVACIA 262 (263)
Q Consensus 238 s~v~~~~~~~~~~~-----~~~~~~i~~IG 262 (263)
..++ +|++.+... .+.+.++++|+
T Consensus 115 a~LK-n~iD~l~~~~~~~~~l~gK~v~~v~ 143 (247)
T 2q62_A 115 GIMK-AQIDWIPLSTGSIRPTQGKTLAVMQ 143 (247)
T ss_dssp HHHH-HHHHTSCSCBTTBCSSTTCEEEEEE
T ss_pred HHHH-HHHHHhhhccCcccccCCCEEEEEE
Confidence 6788 999887532 24566666654
No 100
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=80.92 E-value=2.8 Score=35.52 Aligned_cols=104 Identities=11% Similarity=0.038 Sum_probs=56.7
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-Cc
Q 024727 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IF 103 (263)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~ 103 (263)
++.+.+.-+|++.. ..+...+.|+++|||-...+ ...+++.|.+.|++|+..-. .....+++...+...+ ..
T Consensus 11 ~~~~~~~~~~~~~~--~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~ 84 (275)
T 4imr_A 11 VDLGTENLYFQSMR--LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGV----KPGSTAAVQQRIIASGGTA 84 (275)
T ss_dssp -------CCSCTTS--HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----STTTTHHHHHHHHHTTCCE
T ss_pred cCcccccccccccc--ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHhcCCeE
Confidence 56677777877732 33345689999999987654 46799999999998764321 1112233333333222 22
Q ss_pred cEEE--EeCHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024727 104 DWII--ITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 104 d~Ii--FTS~~aV~~~~~~l~~~~~~~~~i~aVG 135 (263)
..+. +++...++.+++.+.+.+.-+.-|.+.|
T Consensus 85 ~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg 118 (275)
T 4imr_A 85 QELAGDLSEAGAGTDLIERAEAIAPVDILVINAS 118 (275)
T ss_dssp EEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 2221 3677888888887766532233343444
No 101
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=80.82 E-value=4 Score=35.21 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCc--------hhHHHHHHhCCCeeeEEeeeccccCCC----C---hHHHHHHhCCCCEEEEeCH------
Q 024727 179 CTVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTEPVHH----V---DQTVLKQALSIPVVAVASP------ 237 (263)
Q Consensus 179 ~~vL~~~g~~~~--------~~L~~~L~~~G~~v~~~~vY~~~~~~~----~---~~~~~~~l~~~d~vvFtS~------ 237 (263)
.+|+++.|.... +.+.+.+++.|++|..+.+++.-.... . ..++.+.+...|+|||.||
T Consensus 59 mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~si 138 (279)
T 2fzv_A 59 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQI 138 (279)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEE
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCc
Confidence 689999887531 345566777899988888877421111 1 1234555679999999995
Q ss_pred -HHHHHHHHHhcccc-----CCCCceEEEEC
Q 024727 238 -SAVRSSWVNLISDT-----EQWSNSVACIA 262 (263)
Q Consensus 238 -s~v~~~~~~~~~~~-----~~~~~~i~~IG 262 (263)
..++ +|++.+... .+.+.++++|+
T Consensus 139 pg~LK-n~IDrl~~~~g~~~~l~gK~v~lv~ 168 (279)
T 2fzv_A 139 TSVMK-AQIDHLPLEMAGIRPTQGRTLAVMQ 168 (279)
T ss_dssp CHHHH-HHHHHSCSCBTTBCSSTTCEEEEEE
T ss_pred CHHHH-HHHHHHhhhcccccccCCCEEEEEE
Confidence 6889 999987532 24566666654
No 102
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=80.39 E-value=11 Score=34.49 Aligned_cols=140 Identities=10% Similarity=0.032 Sum_probs=85.3
Q ss_pred hHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024727 62 NGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~ 129 (263)
..++.+.|++.|+++..+|=+. ..+.-+ ..++ .++.+.+.+.-+..++..-....+.+++.. ++
T Consensus 184 ~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~-ei~~~~~A~~niv~~~~~~~~~A~~Le~~~--Gi 259 (458)
T 1mio_B 184 MREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIE-DLKDTGNSDLTLSLGSYASDLGAKTLEKKC--KV 259 (458)
T ss_dssp HHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHH-HHHTTSSCSEEEEESHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHH-HHHhhccCCEEEEEchhhHHHHHHHHHHHh--CC
Confidence 4689999999999999876332 112011 1122 244678888888888887777777777642 34
Q ss_pred EEEE----eC-hhHHHHHHHhhhhcCCCCceeecCCCCC--HHHHHHHhccC--CCCCcEEEEEcCCCCchhHHHHHHhC
Q 024727 130 RIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (263)
Q Consensus 130 ~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~t--~e~L~~~l~~~--~~~~~~vL~~~g~~~~~~L~~~L~~~ 200 (263)
+++. +| ..|.+.|++.. ...|..+ |+... -..+.+.+.+. ...|+++++..+....--+...|.+.
T Consensus 260 P~~~~~~p~G~~~T~~~l~~la--~~~g~~~---~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~el 334 (458)
T 1mio_B 260 PFKTLRTPIGVSATDEFIMALS--EATGKEV---PASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIEL 334 (458)
T ss_dssp CEEEECCCBHHHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTT
T ss_pred CEEecCCCcCHHHHHHHHHHHH--HHHCCCc---hHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHC
Confidence 4544 44 57877777651 1124431 11000 01222333322 12578999888876666788899999
Q ss_pred CCeeeEEeee
Q 024727 201 GFEVVRLNTY 210 (263)
Q Consensus 201 G~~v~~~~vY 210 (263)
|+++..+.+.
T Consensus 335 G~~vv~v~~~ 344 (458)
T 1mio_B 335 GAIPKYVVTG 344 (458)
T ss_dssp TCEEEEEEES
T ss_pred CCEEEEEEeC
Confidence 9988766553
No 103
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=80.27 E-value=13 Score=26.36 Aligned_cols=112 Identities=9% Similarity=0.021 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHH
Q 024727 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLE 119 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~~~~ 119 (263)
..+..+++||+.-... ....+.+.|++.|+.+... .+.++....+ ....+|.|+.--. ++.+. ++
T Consensus 2 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~~-~~ 71 (130)
T 3eod_A 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELL-GGFTPDLMICDIAMPRMNGLKL-LE 71 (130)
T ss_dssp -CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHH-TTCCCSEEEECCC-----CHHH-HH
T ss_pred CCCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHHH-HH
Confidence 3567789999997654 3467888899999876431 2333334444 3356898887532 34433 34
Q ss_pred HHHHcCCCCcEEEEe-ChhHH---HHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccC
Q 024727 120 AWKEAGTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (263)
Q Consensus 120 ~l~~~~~~~~~i~aV-G~~Ta---~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~ 174 (263)
.+.+.. ++.+++++ |.... ..+.+. |... +..+.. +.+.|.+.+...
T Consensus 72 ~l~~~~-~~~~ii~~t~~~~~~~~~~~~~~------g~~~-~l~KP~~~~~~l~~~i~~~ 123 (130)
T 3eod_A 72 HIRNRG-DQTPVLVISATENMADIAKALRL------GVED-VLLKPVKDLNRLREMVFAC 123 (130)
T ss_dssp HHHHTT-CCCCEEEEECCCCHHHHHHHHHH------CCSE-EEESCC---CHHHHHHHHH
T ss_pred HHHhcC-CCCCEEEEEcCCCHHHHHHHHHc------CCCE-EEeCCCCcHHHHHHHHHHH
Confidence 444443 34556554 43333 334455 7653 566656 667777666543
No 104
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=80.07 E-value=4.4 Score=32.46 Aligned_cols=82 Identities=7% Similarity=0.144 Sum_probs=47.5
Q ss_pred EEEEEcCCC---C-c----hhHHHH-HHhCCCeeeEEeeecccc--------CCCChHHHHHHhCCCCEEEEeCH-----
Q 024727 180 TVLYPASAK---A-S----NEIEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP----- 237 (263)
Q Consensus 180 ~vL~~~g~~---~-~----~~L~~~-L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~l~~~d~vvFtS~----- 237 (263)
+|+++.|.. + . +.+.+. |++.|.++..+.+++... .......+.+.+...|.|+|.||
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~ 83 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKAS 83 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTB
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCC
Confidence 466666653 2 1 234455 666688777777665321 01111223444568899999886
Q ss_pred --HHHHHHHHHhccccCCCCceEEEEC
Q 024727 238 --SAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 238 --s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
..++ .|++.+....+.+.+++.+|
T Consensus 84 ~p~~lK-~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 84 YTGLLK-AFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp CCHHHH-HHHTTSCTTTTTTCEEEEEE
T ss_pred CCHHHH-HHHHhccccccCCCEEEEEE
Confidence 4677 88887754335566666654
No 105
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=80.00 E-value=9.5 Score=31.73 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=79.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~~ 120 (263)
..+.|+++|||-...+ ...+++.|.+.|++|...- +.. +..+++...++.....+..+ +|+..+++.+++.
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAG--RST--ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4688999999987654 4679999999999876431 110 01122233333332223333 2688888888876
Q ss_pred HHHc-CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCc-
Q 024727 121 WKEA-GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS- 190 (263)
Q Consensus 121 l~~~-~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~- 190 (263)
+.+. +.-+.-|-+.| ..+.+.+++. +.+++...-.-.+.++..|.+. ..++|+++.+..+.
T Consensus 82 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~~~~ 152 (262)
T 3pk0_A 82 AVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGI-------FAVNVNGTFYAVQACLDALIAS--GSGRVVLTSSITGPI 152 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH--SSCEEEEECCSBTTT
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHH-------HHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEechhhcc
Confidence 6543 22233333334 2234444433 2222221111223334444332 34788888764331
Q ss_pred --------------------hhHHHHHHhCCCeeeEEee
Q 024727 191 --------------------NEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 191 --------------------~~L~~~L~~~G~~v~~~~v 209 (263)
..+...|...|+.|..+.-
T Consensus 153 ~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~P 191 (262)
T 3pk0_A 153 TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMP 191 (262)
T ss_dssp BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEe
Confidence 2344455567888866643
No 106
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=79.88 E-value=3.1 Score=35.56 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-------HHHHHHHHH
Q 024727 50 NPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-------PEAGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~---~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-------~~aV~~~~~ 119 (263)
+++||+.-.. .....+.+.|++.|++|..++.-... .+.+ .+.+||.||+.. +..++.+.+
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~--~~~~-------~L~~yDvIIl~d~~~~~l~~~~~~~L~~ 74 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGL--DVGE-------LLAKQDLVILSDYPAERMTAQAIDQLVT 74 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCB--CSSH-------HHHTCSEEEEESCCGGGBCHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccc--cChh-------HHhcCCEEEEcCCccccCCHHHHHHHHH
Confidence 5788988542 45678999999999999987754331 1111 357899999974 445555555
Q ss_pred HHHHcCCCCcEEEEeCh
Q 024727 120 AWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (263)
.+++ +.-++++|.
T Consensus 75 yV~~----GGgLi~~gG 87 (259)
T 3rht_A 75 MVKA----GCGLVMLGG 87 (259)
T ss_dssp HHHT----TCEEEEECS
T ss_pred HHHh----CCeEEEecC
Confidence 5542 456666654
No 107
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=79.83 E-value=22 Score=33.20 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=28.8
Q ss_pred CCCCCCCeEEEeCC-CCChHHHHHHHHhCCCcEEEe
Q 024727 45 SASNSNPKVVVTRE-RGKNGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~-~~~~~~l~~~L~~~G~~v~~~ 79 (263)
.+||.|.+|...-. ..+...|.+.|.+.|++|...
T Consensus 70 ~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~ 105 (494)
T 3d64_A 70 QQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWA 105 (494)
T ss_dssp TCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEE
Confidence 48999999999544 446788999999999999743
No 108
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=79.55 E-value=15 Score=26.38 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=66.7
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~ 123 (263)
.+.+||+.-... ....+...|++.|+++... .+..+....+.....+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DGAEEARLYLHYQKRIGLMITDLRMQPESGLD-LIRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHH-HHHHHHh
Confidence 467899987654 3467888899999876532 23333333443434588888742 24444 3444555
Q ss_pred cCCCCcEEEEeC-hhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 124 AGTPNVRIGVVG-AGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 124 ~~~~~~~i~aVG-~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
....+.+++++. ... ...+.+. |.. ++..+..+.+.|...+.+..
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHL------GVV-DFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhC------Ccc-eEEeCCCCHHHHHHHHHHHh
Confidence 423466776654 322 3334445 765 46777789999998887653
No 109
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=79.26 E-value=7.3 Score=31.59 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=58.2
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHH
Q 024727 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~~~~ 119 (263)
+.+|++..+.. +..-+...|+.+|++|+++..- .| .+.+...... .++|.|..++.. .++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~--vp---~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD--IE---PGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS--BC---HHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHH
Confidence 44677765542 3356788889999999987741 12 2344444422 478898887743 3566677
Q ss_pred HHHHcCC-CCcEEEEeChhHHHHHHHh
Q 024727 120 AWKEAGT-PNVRIGVVGAGTASIFEEV 145 (263)
Q Consensus 120 ~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 145 (263)
.+++.+. +++++++-|+...+.+.+.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~ 188 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADE 188 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHH
Confidence 7776654 4689999998766555443
No 110
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=79.22 E-value=20 Score=35.39 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=72.9
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchH-HHHHHhcCCCccEEEEeC-----HHHHHHHH
Q 024727 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDR-LSSVLNADTIFDWIIITS-----PEAGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~-l~~~l~~l~~~d~IiFTS-----~~aV~~~~ 118 (263)
..+|++..... +..-....|+..|++|+..+.... .++ ++.+. + .+.|.|..+| ...+..++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA~-e-~~adiVglSsl~~~~~~~~~~vi 676 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT-----PREVAQQAV-D-ADVHAVGVSTLAAGHKTLVPELI 676 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC-----HHHHHHHHH-H-TTCSEEEEEECSSCHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCC-----HHHHHHHHH-H-cCCCEEEEeeecHHHHHHHHHHH
Confidence 34677765532 234577789999999998765321 233 33333 2 5788888877 33556677
Q ss_pred HHHHHcCCCCcEEEEeC--hh-HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 119 EAWKEAGTPNVRIGVVG--AG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG--~~-Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+.+++.+.+++++++=| |. ....+++. |+...+.|. .+..+.++.+.+.
T Consensus 677 ~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~pg-td~~e~~~~i~~~ 728 (762)
T 2xij_A 677 KELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGPG-TRIPKAAVQVLDD 728 (762)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECTT-CCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCCC-CCHHHHHHHHHHH
Confidence 77888887677777765 44 36778999 998755554 4776666666543
No 111
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=78.63 E-value=7.1 Score=32.27 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=43.2
Q ss_pred hHHHHHHhC-CCeeeEEeeeccccC-----------------C--CChHHHHHHhCCCCEEEEeCH-------HHHHHHH
Q 024727 192 EIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPVVAVASP-------SAVRSSW 244 (263)
Q Consensus 192 ~L~~~L~~~-G~~v~~~~vY~~~~~-----------------~--~~~~~~~~~l~~~d~vvFtS~-------s~v~~~~ 244 (263)
.+.+.|++. |.+|..+.+|+.... . .....+.+.+...|+|+|.|| ..++ .|
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK-~~ 101 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTK-NF 101 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHH-HH
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHH-HH
Confidence 344556555 888877777754221 1 223345555679999999995 6888 89
Q ss_pred HHhcccc----CCCCceEEEEC
Q 024727 245 VNLISDT----EQWSNSVACIA 262 (263)
Q Consensus 245 ~~~~~~~----~~~~~~i~~IG 262 (263)
++.+... .+.+.++++|+
T Consensus 102 iDr~~~~~~~~~l~gK~~~~i~ 123 (242)
T 1sqs_A 102 IERIGGWSHLFRLAGKFVVTLD 123 (242)
T ss_dssp HHHTGGGTTTTTTTTCEEEEEE
T ss_pred HHHHHHhccccccCCCEEEEEE
Confidence 8876321 13456666553
No 112
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=78.05 E-value=15 Score=31.23 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=46.6
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~ 119 (263)
+..+.|++||||-...+ ...+++.|.+.|++|+..- +. ....+++...+......+..+ +++..+++.+++
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~--r~--~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~ 111 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAA--RS--PRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAAR 111 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SS--GGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE--CC--HHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH
Confidence 45678999999988754 4679999999999876541 11 111233333443322123332 368888888887
Q ss_pred HHHH
Q 024727 120 AWKE 123 (263)
Q Consensus 120 ~l~~ 123 (263)
.+.+
T Consensus 112 ~~~~ 115 (293)
T 3rih_A 112 TVVD 115 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 113
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=77.94 E-value=19 Score=30.67 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=78.3
Q ss_pred CCCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCC-CceeecCCC-CCHHHHHHHhccCCC
Q 024727 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGK 176 (263)
Q Consensus 100 l~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~t~e~L~~~l~~~~~ 176 (263)
....|.||.. +..........+.+. +++++..+.. ...+... + ....+.|.. .....+++.+.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAA-HPDYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC-CGGGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCC-CcccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 3678888864 444555566666654 4667776532 2222222 2 111123333 3456667777665
Q ss_pred CCcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHH-HHHHHHHHhc
Q 024727 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSSWVNLI 248 (263)
Q Consensus 177 ~~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s-~v~~~~~~~~ 248 (263)
..++|.++..+.. .+.+.+.|++.|+++.....|.....+ .....+.+ .++|+|++.+.. .+. .+++.+
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~--~~~~~~~l~~~~~d~i~~~~~~~~a~-~~~~~~ 214 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRR--FDDVIDEIEDEAPQAIYLAMAYEDAA-PFLRAL 214 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCC--CHHHHHHHHHHCCSEEEEESCHHHHH-HHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCcc--HHHHHHHHHhcCCCEEEEccCchHHH-HHHHHH
Confidence 3478888864332 355778899999988766666543222 22223323 378888877765 666 677766
Q ss_pred ccc
Q 024727 249 SDT 251 (263)
Q Consensus 249 ~~~ 251 (263)
.+.
T Consensus 215 ~~~ 217 (358)
T 3hut_A 215 RAR 217 (358)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 114
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=77.91 E-value=10 Score=29.83 Aligned_cols=38 Identities=5% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHhCCCCEEEEeCH-------HHHHHHHHHhccccCCCCceEEEE
Q 024727 222 VLKQALSIPVVAVASP-------SAVRSSWVNLISDTEQWSNSVACI 261 (263)
Q Consensus 222 ~~~~l~~~d~vvFtS~-------s~v~~~~~~~~~~~~~~~~~i~~I 261 (263)
+.+.+...|.|+|.|| ..++ .|++.+... +.+.+++.+
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK-~~iD~~~~~-l~gK~~~~~ 122 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALK-NAIDRLYHE-WHGKPALVV 122 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHTCSTT-TTTCEEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHH-HHHHHHHhh-cCCCEEEEE
Confidence 4444579999999995 6788 888876431 345555443
No 115
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=77.89 E-value=17 Score=30.56 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=67.0
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 024727 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~~~~ 119 (263)
+.+|++..+.. +..-+...|+.+|++|+++..- .|. +++...... .++|.|.+++. ..+..+.+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp~---e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VPA---EEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CCS---HHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHHH
Confidence 56777776542 3346778889999999988763 232 333333322 47888888773 33556677
Q ss_pred HHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 120 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
.+++.+.+ +++++-|....+.+.+.. |... +.++...+-.+++.+.
T Consensus 197 ~l~~~~~~-~~v~vGG~~~~~~~~~~i-----gad~-~~~da~~av~~~~~l~ 242 (258)
T 2i2x_B 197 MLLENGIK-IPFACGGGAVNQDFVSQF-----ALGV-YGEEAADAPKIADAII 242 (258)
T ss_dssp HHHTTTCC-CCEEEESTTCCHHHHHTS-----TTEE-ECSSTTHHHHHHHHHH
T ss_pred HHHhcCCC-CcEEEECccCCHHHHHHc-----CCeE-EECCHHHHHHHHHHHH
Confidence 77766554 899999977655554442 7432 4444444444444443
No 116
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=77.85 E-value=7.7 Score=30.32 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC---CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEe
Q 024727 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (263)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l---~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aV 134 (263)
...+..++.+.|++.|+.+..+.- .+ ....++..++.+ ..+|.++..+..-.+.+...+++.+.+.-.++.|
T Consensus 69 ~~~g~~e~L~~L~~~G~~v~ivT~---~~--~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 69 LYPEVPEVLKRLQSLGVPGAAASR---TS--EIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEEC---CS--CHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cchhHHHHHHHHHHCCceEEEEeC---CC--ChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEE
Confidence 345677888889999987654321 11 012233344333 3467775666666777877777777766678889
Q ss_pred ChhHHH--HHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 135 GAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 135 G~~Ta~--~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
|..... ++++. |+.+..+...++.+.+.+.+.++
T Consensus 144 gD~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~~ 179 (187)
T 2wm8_A 144 DDERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLETF 179 (187)
T ss_dssp ESCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHHH
T ss_pred eCCccChHHHHHc------CCEEEEECCCCChHHHHHHHHHH
Confidence 877554 56666 99887777777787777666544
No 117
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=77.69 E-value=2.1 Score=34.75 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=47.7
Q ss_pred EEEEEcCCCC------chhHHHHHHhCCCeeeEEeeeccccCC-CChHHHHHHhCCCCEEEEeCH-------HHHHHHHH
Q 024727 180 TVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASP-------SAVRSSWV 245 (263)
Q Consensus 180 ~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~l~~~d~vvFtS~-------s~v~~~~~ 245 (263)
|||++.|-.. ...+.+.+++.|.+|..+.+|+..+.. .+.....+.+...|.|+|.|| ..++ .|+
T Consensus 3 kiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK-~~i 81 (192)
T 3f2v_A 3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLK-QWL 81 (192)
T ss_dssp CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHH-HHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHH-HHH
Confidence 4666655433 334667778889899999999976543 233445555679999999885 7788 888
Q ss_pred Hhc
Q 024727 246 NLI 248 (263)
Q Consensus 246 ~~~ 248 (263)
+.+
T Consensus 82 Drv 84 (192)
T 3f2v_A 82 DEV 84 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 118
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=77.50 E-value=13 Score=32.80 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=89.2
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccE
Q 024727 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW 105 (263)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~ 105 (263)
+.|-..+..|++.-+ .++...+||++++- .++..+.|++ ++++...+- ..+.+ +.+..+.++|.
T Consensus 11 ~~~~~~~~~~~~~~~-----~~~~~~~vl~~~~~--~~~~~~~L~~-~~~v~~~~~-----~~~~~---~~~~~~~~~d~ 74 (340)
T 4dgs_A 11 VDLGTENLYFQSMLE-----FRNVKPDLLLVEPM--MPFVMDELQR-NYSVHRLYQ-----AADRP---ALEAALPSIRA 74 (340)
T ss_dssp ---------------------------CEECSCC--CHHHHHTHHH-HSCCEETTC-----GGGHH---HHHHHGGGCCE
T ss_pred ccccchhhHHHhhhc-----cCCCCCEEEEECCC--CHHHHHHHhc-CCcEEEeCC-----CCCHH---HHHHHhCCcEE
Confidence 445555566665222 12234579999875 3555666754 466653311 11222 23334478999
Q ss_pred EEEeCHHHH-HHHHHHHHHcCCCCcEEEE-eChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----h----
Q 024727 106 IIITSPEAG-SVFLEAWKEAGTPNVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE----L---- 171 (263)
Q Consensus 106 IiFTS~~aV-~~~~~~l~~~~~~~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l---- 171 (263)
++..+...+ +.+++.+ ++.++++ .|-.+ .+++++. |+.+.-.|. .+.+.+++. +
T Consensus 75 li~~~~~~i~~~~l~~~-----p~Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~ 142 (340)
T 4dgs_A 75 VATGGGAGLSNEWMEKL-----PSLGIIAINGVGTDKVDLARARRR------NIDVTTTPG-VLADDVADLGIALMLAVL 142 (340)
T ss_dssp EEEETTTCBCHHHHHHC-----SSCCEEEEESSCCTTBCHHHHHHT------TCEEECCCS-SSHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCHHHHhhC-----CCCEEEEECCCCccccCHHHHHhC------CEEEEECCC-CCcchHHHHHHHHHHHHH
Confidence 987664333 2233322 3455543 33332 4678888 998866664 444444322 1
Q ss_pred cc----------------------CCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCCh----HHHHHH
Q 024727 172 PK----------------------NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLKQ 225 (263)
Q Consensus 172 ~~----------------------~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~----~~~~~~ 225 (263)
.+ ....|+++.++.-..-...+...|+..|.+| .+|.+....... ..+.+.
T Consensus 143 R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~sl~el 219 (340)
T 4dgs_A 143 RRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV---RYWNRSTLSGVDWIAHQSPVDL 219 (340)
T ss_dssp TTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECSSCCTTSCCEECSSHHHH
T ss_pred hChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEE---EEEcCCcccccCceecCCHHHH
Confidence 00 1124678888876665667888999999865 466654432111 123444
Q ss_pred hCCCCEEEEeCHHH
Q 024727 226 ALSIPVVAVASPSA 239 (263)
Q Consensus 226 l~~~d~vvFtS~s~ 239 (263)
+...|+|++.-|.+
T Consensus 220 l~~aDvVil~vP~t 233 (340)
T 4dgs_A 220 ARDSDVLAVCVAAS 233 (340)
T ss_dssp HHTCSEEEECC---
T ss_pred HhcCCEEEEeCCCC
Confidence 46899999998843
No 119
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=77.09 E-value=2.8 Score=35.18 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~aV--~~~~~~l~~~~~~~~~i~aVG~~ 137 (263)
.+.+.++++|+++..... ....+.+ .++..+ ...+|.||+.....- ...++.+ . .++++++++..
T Consensus 26 g~~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~vdgiii~~~~~~~~~~~~~~~---~-~~iPvV~~~~~ 96 (304)
T 3o1i_D 26 GMVSEAEKQGVNLRVLEA---GGYPNKSRQEQQLALCT--QWGANAIILGTVDPHAYEHNLKSW---V-GNTPVFATVNQ 96 (304)
T ss_dssp HHHHHHHHHTCEEEEEEC---SSTTCHHHHHHHHHHHH--HHTCSEEEECCSSTTSSTTTHHHH---T-TTSCEEECSSC
T ss_pred HHHHHHHHcCCeEEEEcC---CCCCCHHHHHHHHHHHH--HcCCCEEEEeCCChhHHHHHHHHH---c-CCCCEEEecCC
Confidence 455666778987765432 1101221 223333 147999999865433 3333333 3 47889999643
Q ss_pred HHHHHHHhhhhcCCCCceeec-CCC-CCHHHHHHHhccCCCC---CcEEEEEcCCCCc-------hhHHHHHHhCCCeee
Q 024727 138 TASIFEEVIQSSKCSLDVAFS-PSK-ATGKILASELPKNGKK---KCTVLYPASAKAS-------NEIEEGLSNRGFEVV 205 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~-p~~-~t~e~L~~~l~~~~~~---~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~ 205 (263)
........ +....++ .+. ..+..+++.|.+...+ .++|.++.|.... .-+.+.|++.|+++.
T Consensus 97 ~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 170 (304)
T 3o1i_D 97 LDLDEEQS------TLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIV 170 (304)
T ss_dssp CCCCTTTG------GGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEE
T ss_pred CcccccCC------CceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEE
Confidence 21000001 1111222 222 2334555666665411 4689999887542 334556667776664
Q ss_pred EEeeeccccCCCChH---H-HHH--HhCCCCEEEEeCHHHHHHHHHHhcccc
Q 024727 206 RLNTYTTEPVHHVDQ---T-VLK--QALSIPVVAVASPSAVRSSWVNLISDT 251 (263)
Q Consensus 206 ~~~vY~~~~~~~~~~---~-~~~--~l~~~d~vvFtS~s~v~~~~~~~~~~~ 251 (263)
.. +. .....+ + +.+ .-.++++ ++.+-..+. ..++.+.+.
T Consensus 171 ~~--~~---~~~~~~~~~~~~~~~l~~~~~~a-i~~~d~~a~-g~~~al~~~ 215 (304)
T 3o1i_D 171 DS--FW---ADNDKELQRNLVQRVIDMGNIDY-IVGSAVAIE-AAISELRSA 215 (304)
T ss_dssp EC--CC---CCSCHHHHHHHHHHHHHHSCCSE-EEECHHHHH-HHHHHHTTT
T ss_pred Ee--ec---CCCcHHHHHHHHHHHHcCCCCCE-EEecCcchH-HHHHHHHhc
Confidence 42 21 122221 1 111 2257899 677877777 777776654
No 120
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=76.54 E-value=20 Score=31.71 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=88.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--H-HHHHHHHHHcCCCCcEEEE---eCh
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--G-SVFLEAWKEAGTPNVRIGV---VGA 136 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--V-~~~~~~l~~~~~~~~~i~a---VG~ 136 (263)
..+.+.|++.|+++...+--.. +.+++. +.+.++|.|+.++... + +.+++ .. ++.++++ +|-
T Consensus 30 l~~~~~L~~~g~ev~~~~~~~~----~~~~~~---~~~~~ad~li~~~~~~~~~~~~~l~---~~--p~Lk~i~~~g~G~ 97 (351)
T 3jtm_A 30 LGIRDWLESQGHQYIVTDDKEG----PDCELE---KHIPDLHVLISTPFHPAYVTAERIK---KA--KNLKLLLTAGIGS 97 (351)
T ss_dssp GGCHHHHHHTTCEEEEESCCSS----TTSHHH---HHTTTCSEEEECTTSCCCBCHHHHH---HC--SSCCEEEESSSCC
T ss_pred HHHHHHHHHCCCEEEEeCCCCC----CHHHHH---HHhCCCEEEEEccCCCCCCCHHHHh---hC--CCCeEEEEeCeee
Confidence 3678899999999886543221 122333 3468899988754211 1 11222 21 3566655 332
Q ss_pred h--HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hcc--------------------------CCCCCcEEEEE
Q 024727 137 G--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LPK--------------------------NGKKKCTVLYP 184 (263)
Q Consensus 137 ~--Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~~--------------------------~~~~~~~vL~~ 184 (263)
- -.+++++. |+.+.-.|. ++++.+++. +.. ....|+++.++
T Consensus 98 d~id~~~a~~~------gI~V~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGII 170 (351)
T 3jtm_A 98 DHIDLQAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTV 170 (351)
T ss_dssp TTBCHHHHHHT------TCEEEECTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEE
T ss_pred cccCHHHHHhc------CeeEEECCC-cCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEE
Confidence 2 23677888 998866664 444444321 110 11357888888
Q ss_pred cCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC---------hHHHHHHhCCCCEEEEeCHH
Q 024727 185 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV---------DQTVLKQALSIPVVAVASPS 238 (263)
Q Consensus 185 ~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~---------~~~~~~~l~~~d~vvFtS~s 238 (263)
.-..-...+...|+..|++| ..|.+...... ...+.+.+...|+|++.-|.
T Consensus 171 G~G~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Pl 230 (351)
T 3jtm_A 171 GAGRIGKLLLQRLKPFGCNL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPL 230 (351)
T ss_dssp CCSHHHHHHHHHHGGGCCEE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCC
T ss_pred EeCHHHHHHHHHHHHCCCEE---EEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCC
Confidence 77666677889999998864 45664432110 01233334689999998874
No 121
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=76.48 E-value=7.5 Score=31.48 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=31.5
Q ss_pred EEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchh
Q 024727 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNE 192 (263)
Q Consensus 131 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~ 192 (263)
|++-| .|++.|++.+ ++++ +.-..+.-++++.|.+....++++.++....--..
T Consensus 55 IISRG-gta~~lr~~~-----~iPV--V~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~ 108 (196)
T 2q5c_A 55 IISRG-ATSDYIKKSV-----SIPS--ISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVD 108 (196)
T ss_dssp EEEEH-HHHHHHHTTC-----SSCE--EEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSC
T ss_pred EEECC-hHHHHHHHhC-----CCCE--EEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhH
Confidence 34444 6778887763 4444 33345666777777655444567777766654433
No 122
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=75.51 E-value=1.4 Score=40.52 Aligned_cols=145 Identities=11% Similarity=0.070 Sum_probs=83.5
Q ss_pred eEEEeCCCCCh--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024727 52 KVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (263)
Q Consensus 52 ~ILitr~~~~~--~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~ 129 (263)
+|-+.-.-... .++.+.|++.|+++..++... ..++ ++++.+.+.-+..++.. ....+.+++.+.+-.
T Consensus 185 ~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-----~~~e----i~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~i 254 (437)
T 3aek_A 185 ELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-----RSDI----EPAVGPNTRFILAQPFL-GETTGALERRGAKRI 254 (437)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-----SGGG----CCCBCTTCEEEESSTTC-HHHHHHHHHTTCEEC
T ss_pred cEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-----CHHH----HHhhhcCcEEEEECccH-HHHHHHHHHcCCCeE
Confidence 34444333333 689999999999999766432 1222 33567777777777766 555555545543322
Q ss_pred EE-EEeC-hhHHHHHHHhhhhcCCCCceeecCCC---CCHHHHHHHhccCC--CCCcEEEEEcCCCCchhHHHHH-HhCC
Q 024727 130 RI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSK---ATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGL-SNRG 201 (263)
Q Consensus 130 ~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~---~t~e~L~~~l~~~~--~~~~~vL~~~g~~~~~~L~~~L-~~~G 201 (263)
.. +-+| ..|.+.|++.. ...|..... .+. ..-..+...+.+.. ..|+++++..+....--+...| .+.|
T Consensus 255 ~~~~P~G~~~T~~~l~~la--~~~g~~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~elG 331 (437)
T 3aek_A 255 AAPFPFGEEGTTLWLKAVA--DAYGVSAEK-FEAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLARECG 331 (437)
T ss_dssp CCCCSCHHHHHHHHHHHHH--HHTTCCHHH-HHHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTTC
T ss_pred ecCCCcCHHHHHHHHHHHH--HHHCCChhh-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHcC
Confidence 22 2256 56777777761 222433210 000 00111222232221 2578999988877777788899 9999
Q ss_pred CeeeEEee
Q 024727 202 FEVVRLNT 209 (263)
Q Consensus 202 ~~v~~~~v 209 (263)
+++..+.+
T Consensus 332 ~~vv~~~~ 339 (437)
T 3aek_A 332 MKTTEIAT 339 (437)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 99987766
No 123
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=75.46 E-value=7.6 Score=31.72 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=46.4
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEE----eCHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIII----TSPEAGSVF 117 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~--~~d~IiF----TS~~aV~~~ 117 (263)
...+.|++||||....+ ...+++.|.+.|++|+..- +.. ...+++.+.+.... ....+.+ ++...++.+
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG--RTE--ASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe--cCH--HHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 35688999999988654 4678999999999876431 110 11122333333332 2223322 788889888
Q ss_pred HHHHHHc
Q 024727 118 LEAWKEA 124 (263)
Q Consensus 118 ~~~l~~~ 124 (263)
++.+.+.
T Consensus 85 ~~~~~~~ 91 (247)
T 3i1j_A 85 AARVEHE 91 (247)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876553
No 124
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=74.93 E-value=48 Score=29.88 Aligned_cols=165 Identities=13% Similarity=0.014 Sum_probs=93.8
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHHcCCC
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTP 127 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~-~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~~~~~l~~~~~~ 127 (263)
.++|+++.+- .+...+.|++.|+ ++...+- . .+.+++ +..+.++|.+++.|...+. .+++.+ +
T Consensus 4 ~~kil~~~~~--~~~~~~~l~~~~~~~v~~~~~----~-~~~~~l---~~~~~~~d~l~~~~~~~~~~~~l~~~-----~ 68 (404)
T 1sc6_A 4 KIKFLLVEGV--HQKALESLRAAGYTNIEFHKG----A-LDDEQL---KESIRDAHFIGLRSRTHLTEDVINAA-----E 68 (404)
T ss_dssp SCCEEECSCC--CHHHHHHHHHTTCCCEEECSS----C-CCHHHH---HHHTTSCSEEEECSSCCBCHHHHHHC-----S
T ss_pred ceEEEEeCCC--CHHHHHHHHhCCCcEEEEcCC----C-CCHHHH---HHHhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 3579988654 3445567888887 6665431 1 123333 3346889999887754332 222221 3
Q ss_pred CcEEEE-eChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh----c----c--------------------C
Q 024727 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P----K--------------------N 174 (263)
Q Consensus 128 ~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l----~----~--------------------~ 174 (263)
+.++++ .|-.+ -+++.+. |+.+.-.|. ++++.+++.. . + .
T Consensus 69 ~Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~ 141 (404)
T 1sc6_A 69 KLVAIGAFAIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF 141 (404)
T ss_dssp SCCEEEECSSCCTTBCHHHHHHT------TCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC
T ss_pred CCcEEEECCcccCccCHHHHHhC------CCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCcc
Confidence 455543 33333 4678888 998866664 4444443211 0 0 1
Q ss_pred CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHhCCCCEEEEeCHHH
Q 024727 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 175 ~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~l~~~d~vvFtS~s~ 239 (263)
...|+++.++.-..-...+...|+..|.+| .+|++...... ...+.+.+...|+|++.-|.+
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESLGMYV---YFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHCCCEE---EEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 135778888876655667888999999876 45554332111 012333345789999887764
No 125
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=74.45 E-value=16 Score=28.52 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCcEEEEEcCC-----CCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCH-----HHHHHHH
Q 024727 177 KKCTVLYPASA-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSSW 244 (263)
Q Consensus 177 ~~~~vL~~~g~-----~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~-----s~v~~~~ 244 (263)
...+|++.+-. .+...+...|+..|++|..+-.. .+.+++.+.+ .++|+|.+++. ..+. .+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~-~~ 89 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMK-RL 89 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHH-HH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHH-HH
Confidence 34577666432 23577888999999988655443 2334444443 58999998874 2345 55
Q ss_pred HHhccccCCCCceEEEECC
Q 024727 245 VNLISDTEQWSNSVACIAG 263 (263)
Q Consensus 245 ~~~~~~~~~~~~~i~~IGp 263 (263)
.+.+++....+++|++=|+
T Consensus 90 i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 90 MAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp HHHHHHTTCTTSCEEEEEC
T ss_pred HHHHHhcCCCCCEEEEeCC
Confidence 5555543234677777663
No 126
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=73.65 E-value=47 Score=29.25 Aligned_cols=184 Identities=12% Similarity=0.082 Sum_probs=93.7
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccE
Q 024727 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW 105 (263)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~ 105 (263)
+.|-..+=+||+.+ ....++||++.+-. ++..+.|++. +++...+. ..+ .+.+++ ++.+.++|.
T Consensus 11 ~~~~~~~~~~~~~~-------~~~~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~--~~~-~~~~~l---~~~~~~~d~ 74 (345)
T 4g2n_A 11 VDLGTENLYFQSMS-------THPIQKAFLCRRFT--PAIEAELRQR-FDLEVNLE--DTV-LTPSGI---ASRAHGAEV 74 (345)
T ss_dssp -----------------------CCCEEEESSCCC--HHHHHHHHHH-SEEEECTT--CCC-CCHHHH---HHHTTTCSE
T ss_pred ccccccceeeeecc-------cCCCCEEEEeCCCC--HHHHHHHHcc-CCEEEecC--CCC-CCHHHH---HHHhcCCeE
Confidence 45555666777733 12356899998753 4556667665 45543221 011 122333 334688999
Q ss_pred EEEeCHHHH-HHHHHHHHHcCCCCcEEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc-------
Q 024727 106 IIITSPEAG-SVFLEAWKEAGTPNVRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP------- 172 (263)
Q Consensus 106 IiFTS~~aV-~~~~~~l~~~~~~~~~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~------- 172 (263)
++..+...+ +.+++.+ .+++++++. |-. -.+++++. |+.+.-.|. ++++.+++...
T Consensus 75 li~~~~~~i~~~~l~~~----~~~Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~ 143 (345)
T 4g2n_A 75 LFVTATEAITAEVIRKL----QPGLKTIATLSVGYDHIDMAAARSL------GIKVLHTPD-VLSDACAEIAMLLVLNAC 143 (345)
T ss_dssp EEECTTSCBCHHHHHHT----TTTCCEEEESSSCCTTBCHHHHHHT------TCEEECCCS-CCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHhh----cCCceEEEEcCCcccccCHHHHHhC------CEEEEECCc-ccchHHHHHHHHHHHHHH
Confidence 987653222 2233322 124555542 222 34678888 998866663 55555543311
Q ss_pred -------------c-----------CCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-------hHH
Q 024727 173 -------------K-----------NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQT 221 (263)
Q Consensus 173 -------------~-----------~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-------~~~ 221 (263)
+ ....|+++.++.-..-...+...|+..|.+| ..|++...... ...
T Consensus 144 R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~g~~~~~~ 220 (345)
T 4g2n_A 144 RRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAI---HYHNRTRLSHALEEGAIYHDT 220 (345)
T ss_dssp HTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEE---EEECSSCCCHHHHTTCEECSS
T ss_pred hCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEE---EEECCCCcchhhhcCCeEeCC
Confidence 0 1134678888876666677889999999865 44554432100 012
Q ss_pred HHHHhCCCCEEEEeCHHH
Q 024727 222 VLKQALSIPVVAVASPSA 239 (263)
Q Consensus 222 ~~~~l~~~d~vvFtS~s~ 239 (263)
+.+.+...|+|++.-|.+
T Consensus 221 l~ell~~sDvV~l~~Plt 238 (345)
T 4g2n_A 221 LDSLLGASDIFLIAAPGR 238 (345)
T ss_dssp HHHHHHTCSEEEECSCCC
T ss_pred HHHHHhhCCEEEEecCCC
Confidence 333345889999887743
No 127
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=73.44 E-value=22 Score=25.29 Aligned_cols=112 Identities=11% Similarity=0.094 Sum_probs=62.5
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCc-EEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERG-KNGKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEA 120 (263)
Q Consensus 47 ~l~g~~ILitr~~~-~~~~l~~~L~~~G~~-v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~ 120 (263)
++.+++||+.-... ....+.+.|++.|+. +... .+..+....+.....+|.|+.- ..++.+. ++.
T Consensus 2 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~-~~~ 72 (129)
T 3h1g_A 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEA--------EHGVEAWEKLDANADTKVLITDWNMPEMNGLDL-VKK 72 (129)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHH-HHH
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEe--------CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHH-HHH
Confidence 34567899886653 356788889999975 3211 2222222333333468887753 2345543 344
Q ss_pred HHHcC-CCCcEEEEeC-h---hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 121 WKEAG-TPNVRIGVVG-A---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 121 l~~~~-~~~~~i~aVG-~---~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+.+.. ..+++++.+. . .......+. |.. ++..+..+.+.|.+.+...
T Consensus 73 lr~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~l~~~ 124 (129)
T 3h1g_A 73 VRSDSRFKEIPIIMITAEGGKAEVITALKA------GVN-NYIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp HHTSTTCTTCCEEEEESCCSHHHHHHHHHH------TCC-EEEESCCCHHHHHHHHHHH
T ss_pred HHhcCCCCCCeEEEEeCCCChHHHHHHHHc------Ccc-EEEeCCCCHHHHHHHHHHH
Confidence 54432 2456666653 2 233344556 765 4777788999998887654
No 128
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=73.29 E-value=8.6 Score=30.95 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCc--------hhHHH----HHHhC--CCeeeEEeeeccccC-------CCCh---HHHHHHhCCCCEEEE
Q 024727 179 CTVLYPASAKAS--------NEIEE----GLSNR--GFEVVRLNTYTTEPV-------HHVD---QTVLKQALSIPVVAV 234 (263)
Q Consensus 179 ~~vL~~~g~~~~--------~~L~~----~L~~~--G~~v~~~~vY~~~~~-------~~~~---~~~~~~l~~~d~vvF 234 (263)
+||+++.|.... +.+.+ .|++. |+++..+.+++...+ .... .++.+.+...|.|+|
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 678888876542 22333 34444 778888877664321 1111 234555579999999
Q ss_pred eCH-------HHHHHHHHHhccccCCCCceEEEE
Q 024727 235 ASP-------SAVRSSWVNLISDTEQWSNSVACI 261 (263)
Q Consensus 235 tS~-------s~v~~~~~~~~~~~~~~~~~i~~I 261 (263)
.|| ..++ +|++.+....+.+.+++.+
T Consensus 92 ~sP~Y~~~~~~~lK-~~iD~~~~~~l~gK~~~~v 124 (191)
T 3k1y_A 92 ATPVFKASYTGLFK-MFFDILDTDALTGMPTIIA 124 (191)
T ss_dssp EEECBTTBSCHHHH-HHHHHSCTTTTTTCEEEEE
T ss_pred EcCccCCcCcHHHH-HHHHHhhhhhcCCCEEEEE
Confidence 986 5678 8888775433556666554
No 129
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=73.10 E-value=35 Score=27.46 Aligned_cols=167 Identities=8% Similarity=0.016 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++...+. ..+.+...+.++. ...+|.||+.+...-. ...+.+. +.+++.+|...
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~l~~~---~~pvV~~~~~~--- 89 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMES-----QFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT--EEMLAHW---QSSLVLLARDA--- 89 (255)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--TTTSGGG---SSSEEEESSCC---
T ss_pred HHHHHHHHcCCEEEEEeC-----CCcHHHHHHHHHHHHhcCCCEEEEecCcccc--HHHHHhc---CCCEEEEcccc---
Confidence 345667788988765431 1122211122221 3679999988643211 1112222 56788888631
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCCC-C-------chhHHHHHHhCCCeeeEEeeecc
Q 024727 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
. ++.. +..+. ..+..+++.|.+. ..++|.++.|.. . ..-+.+.|++.|..+.. ++
T Consensus 90 ---~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~-- 153 (255)
T 1byk_A 90 ---K------GFAS-VCYDDEGAIKILMQRLYDQ--GHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--AL-- 153 (255)
T ss_dssp ---S------SCEE-EEECHHHHHHHHHHHHHHT--TCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--EC--
T ss_pred ---C------CCCE-EEEccHHHHHHHHHHHHHc--CCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce--ee--
Confidence 2 3332 22332 2344556667664 347899998762 2 13356788889886542 22
Q ss_pred ccCCCChHHHH---HH-h-CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 213 EPVHHVDQTVL---KQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 213 ~~~~~~~~~~~---~~-l-~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
.....+... +. + .++++|+.++-..+. .+++.+.+....++.|++++
T Consensus 154 --~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~-g~~~al~~~g~~di~vig~d 205 (255)
T 1byk_A 154 --PGLAMKQGYENVAKVITPETTALLCATDTLAL-GASKYLQEQRIDTLQLASVG 205 (255)
T ss_dssp --CCSCHHHHHHHSGGGCCTTCCEEEESSHHHHH-HHHHHHHHTTCCSCEEEEEC
T ss_pred --cCCccchHHHHHHHHhcCCCCEEEEeChHHHH-HHHHHHHHcCCCcEEEEEeC
Confidence 122222211 11 2 368999999987777 77776655434567777664
No 130
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=72.63 E-value=17 Score=30.18 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=29.2
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.|...+.|+++|||-...+ ...+++.|.+.|++|...
T Consensus 3 ~m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 3 AMHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3556788999999987654 467899999999987753
No 131
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=72.44 E-value=20 Score=28.76 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCCccEEEEeCHHHHHHHH-HHHHHcCCCCcEEEE--eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 100 DTIFDWIIITSPEAGSVFL-EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 100 l~~~d~IiFTS~~aV~~~~-~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
+.++|.++.+.++...... ...-.......++++ -++...+.|++. |....+.|....+..+.+.+.
T Consensus 63 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 63 VSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp CCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred cccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 6789999988776554433 222222223455654 478888999998 998767777666777776664
No 132
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=72.34 E-value=8.5 Score=34.93 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCHHHHHHHhccCC---CCCcEEEEE--cCCCC----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEE
Q 024727 162 ATGKILASELPKNG---KKKCTVLYP--ASAKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVV 232 (263)
Q Consensus 162 ~t~e~L~~~l~~~~---~~~~~vL~~--~g~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~v 232 (263)
.+.+.+++.-.++. ...++|+++ ..-+. -+.+.+.|.+.|+++..+.+|+... ....++.+.+.+.+.+
T Consensus 246 ~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~--~~~s~i~~~i~~~~~i 323 (410)
T 4dik_A 246 KDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER--PAISEILKDIPDSEAL 323 (410)
T ss_dssp SCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC--CCHHHHHHHSTTCSEE
T ss_pred cCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCC--CCHHHHHHHHHhCCeE
Confidence 46667766544331 223344443 33332 2567788899999887666766433 2234566667899999
Q ss_pred EEeCHH-------HHHHHHHHhccccCCCCceEEEEC
Q 024727 233 AVASPS-------AVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 233 vFtS~s-------~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
+|-||. .+. .|+..+......+.+++++|
T Consensus 324 vlGspT~~~~~~p~~~-~~l~~l~~~~~~~K~~~~FG 359 (410)
T 4dik_A 324 IFGVSTYEAEIHPLMR-FTLLEIIDKANYEKPVLVFG 359 (410)
T ss_dssp EEEECCTTSSSCHHHH-HHHHHHHHHCCCCCEEEEEE
T ss_pred EEEeCCcCCcCCHHHH-HHHHHHHhcccCCCEEEEEE
Confidence 999985 556 56555443335567777776
No 133
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=71.70 E-value=6.7 Score=32.56 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=46.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~l 121 (263)
..+.|+++|||....+ ...+++.|.+.|++|...-. ..+..+++...++..+ ...++. +|+..+++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRR----NGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEES----SGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHH
Confidence 4678999999987754 46899999999998764311 1111233333443322 122222 37889999998877
Q ss_pred HHc
Q 024727 122 KEA 124 (263)
Q Consensus 122 ~~~ 124 (263)
.+.
T Consensus 79 ~~~ 81 (252)
T 3h7a_A 79 DAH 81 (252)
T ss_dssp HHH
T ss_pred Hhh
Confidence 665
No 134
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=71.65 E-value=17 Score=26.25 Aligned_cols=111 Identities=7% Similarity=0.024 Sum_probs=63.5
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~ 120 (263)
.+..+.+||+.-... ....+...|++.|+++... .+.++....+. ...+|.|++-- .++.+ +++.
T Consensus 3 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~-~~~~ 72 (142)
T 3cg4_A 3 LAEHKGDVMIVDDDAHVRIAVKTILSDAGFHIISA--------DSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWD-TIRA 72 (142)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHH-TCCCEEEEEESCCSSSCHHH-HHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEe--------CCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHH-HHHH
Confidence 345678899987654 3567888899888754321 23333344443 35688888752 24444 4444
Q ss_pred HHHc-CCCCcEEEEeChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 121 WKEA-GTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 121 l~~~-~~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+.+. ...+++++++.... ...+.+. |.. ++..+..+.+.|...+..
T Consensus 73 l~~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~~ 123 (142)
T 3cg4_A 73 ILDNSLEQGIAIVMLTAKNAPDAKMIGLQE------YVV-DYITKPFDNEDLIEKTTF 123 (142)
T ss_dssp HHHTTCCTTEEEEEEECTTCCCCSSTTGGG------GEE-EEEESSCCHHHHHHHHHH
T ss_pred HHhhcccCCCCEEEEECCCCHHHHHHHHhc------Ccc-EEEeCCCCHHHHHHHHHH
Confidence 5542 23467777764432 1223334 654 466777788888877754
No 135
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=71.37 E-value=14 Score=32.15 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=74.3
Q ss_pred CCccEEEEeCH-HHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCC-CCCHHHHHHHhccCCCCC
Q 024727 101 TIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (263)
Q Consensus 101 ~~~d~IiFTS~-~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~-~~t~e~L~~~l~~~~~~~ 178 (263)
...|.||.... .........+.+. ++++++++..+. .... .....+.+. ......+++.|.+.. .
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~~l~~~g--~ 140 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERA---DALLCYPTPYEG--FEYS------PNIVYGGPAPNQNSAPLAAYLIRHY--G 140 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHT---TCEEEECSCCCC--CCCC------TTEEECSCCGGGTHHHHHHHHHTTT--C
T ss_pred CCcEEEECCCchHHHHHHHHHHHhc---CceEEECCcccC--ccCC------CCEEEecCChHHhHHHHHHHHHHcc--C
Confidence 57899988643 3445555655554 567877764210 0001 111112233 234567777777654 4
Q ss_pred cEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeC-HHHHHHHHHHhccc
Q 024727 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSSWVNLISD 250 (263)
Q Consensus 179 ~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS-~s~v~~~~~~~~~~ 250 (263)
++|.++.++.. .+.+.+.|++.|+++.....|.............+.+ .++|+|++.+ ...+. .+++.+.+
T Consensus 141 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~-~~~~~~~~ 219 (385)
T 1pea_A 141 ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTA-ELYRAIAR 219 (385)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHH-HHHHHHHH
T ss_pred cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHH-HHHHHHHH
Confidence 88988877532 2456778889999876543332110111111222222 3789999887 55555 66665544
No 136
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=70.94 E-value=28 Score=29.47 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=75.9
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCC
Q 024727 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (263)
Q Consensus 101 ~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~ 178 (263)
...|.||-. +..........+.+. +++++..+.. . +...- ......+.+.. .....+++.+.+. ..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~--~-~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~--g~ 135 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEA---QIPHIALAPL--P-ITPER----AKWSVVMPQPIPIMGKVLYEHMKKN--NV 135 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC--C-CCTTT----TTTEEECSCCHHHHHHHHHHHHHHT--TC
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHc---CccEEEecCC--c-cccCC----CCcEEecCCChHHHHHHHHHHHHhc--CC
Confidence 478999864 444455556666655 4667766533 1 11110 01111122322 2345566666653 34
Q ss_pred cEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEEeC-HHHHHHHHHHhcccc
Q 024727 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS-PSAVRSSWVNLISDT 251 (263)
Q Consensus 179 ~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvFtS-~s~v~~~~~~~~~~~ 251 (263)
++|.++..+.. .+.+.+.|++.|+++.....|..... .....+.+.. .++|+|++.+ ...+- .+++.+.+.
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~l~~~~~dav~~~~~~~~a~-~~~~~~~~~ 213 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDT-SVAGQALKLVAANPDAILVGASGTAAA-LPQTTLRER 213 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCS-CCHHHHHHHHHHCCSEEEEECCHHHHH-HHHHHHHHT
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCC-CHHHHHHHHHhcCCCEEEEecCcchHH-HHHHHHHHc
Confidence 78888855432 35677889999998766566654322 2222222211 4889998888 67777 777766543
No 137
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=70.74 E-value=18 Score=30.09 Aligned_cols=74 Identities=12% Similarity=-0.042 Sum_probs=49.3
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHH
Q 024727 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFL 118 (263)
Q Consensus 46 ~~l~g~~ILitr~~---~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~~~ 118 (263)
..|.||++|||-.. .=...+++.|.+.|++|...- +.+ ...+++.+.+++.+..+...+ |+...++.++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTY--RKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 46899999999843 235689999999999987542 211 123445555655544444443 7889998888
Q ss_pred HHHHH
Q 024727 119 EAWKE 123 (263)
Q Consensus 119 ~~l~~ 123 (263)
+...+
T Consensus 78 ~~~~~ 82 (256)
T 4fs3_A 78 EQIGK 82 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 138
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=70.66 E-value=33 Score=33.62 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchH-HHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 024727 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDR-LSSVLNADTIFDWIIITSP-----EAGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~-l~~~l~~l~~~d~IiFTS~-----~aV~~~~ 118 (263)
..+|++..... +..-....|+..|++|+..+.... .++ ++.+. + .+.|.|..+|. ..+...+
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA~-e-~~adiVglSsl~~~~~~~~~~vi 668 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQT-----PEETARQAV-E-ADVHVVGVSSLAGGHLTLVPALR 668 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBC-----HHHHHHHHH-H-TTCSEEEEEECSSCHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCC-----HHHHHHHHH-H-cCCCEEEEeeecHhHHHHHHHHH
Confidence 34677765532 234567788999999998766422 233 33333 2 57888888773 3456677
Q ss_pred HHHHHcCCCCcEEEEeC---hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 119 EAWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG---~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+.+++.+.++++|++=| ..-.+.+++. |+...+.| ..+..+++..+.+
T Consensus 669 ~~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~-gt~~~e~a~~l~~ 719 (727)
T 1req_A 669 KELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTP-GTVIPESAISLVK 719 (727)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECT-TCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcC-CccHHHHHHHHHH
Confidence 77788777677776665 2234778888 99875544 4566666655543
No 139
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=70.64 E-value=25 Score=24.78 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=62.6
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHcC
Q 024727 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (263)
Q Consensus 51 ~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~l~~~~ 125 (263)
++||+.-... ....+...|++.|+++... .+.++..+.+ .-..+|.|+.- ..++.+.. +.+.+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvllD~~~p~~~g~~~~-~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKL-SEFTPDLIVLXIMMPVMDGFTVL-KKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-TTBCCSEEEECSCCSSSCHHHHH-HHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-HhcCCCEEEEeccCCCCcHHHHH-HHHHhcc
Confidence 5788886543 3457788888889766432 2333333344 23568988774 23455533 4444332
Q ss_pred -CCCcEEEEeC-h---hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 126 -TPNVRIGVVG-A---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 126 -~~~~~i~aVG-~---~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
..+++++.+. . .......+. |.. ++..+..+.+.|...+.+
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~------Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSL------GAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHH
T ss_pred cccCCCEEEEecCCchHHHHHHHhc------Chh-hhccCCCCHHHHHHHHHH
Confidence 2456666553 2 333444455 765 477777899999877754
No 140
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=70.54 E-value=3.3 Score=30.92 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHHHHHHHcCCCCcEEEE
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---------aV~~~~~~l~~~~~~~~~i~a 133 (263)
+.+.+.|++.|.++..+++-+. +. .++.++|.|+|-||. .+..|++.+... +.+.++++
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~----~~-------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~ 84 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV----NI-------DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVAL 84 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC----CH-------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC----CH-------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEE
Confidence 3455556677887765543221 11 134689999998773 478888877654 56778887
Q ss_pred eC
Q 024727 134 VG 135 (263)
Q Consensus 134 VG 135 (263)
+|
T Consensus 85 f~ 86 (138)
T 5nul_A 85 FG 86 (138)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 141
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=70.53 E-value=33 Score=30.09 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCc------hhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCHH-------HHHHHH
Q 024727 178 KCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSSW 244 (263)
Q Consensus 178 ~~~vL~~~g~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~s-------~v~~~~ 244 (263)
+++++++-+.... +.+.+.|.+.|+++..+.+.+ ....++.+.+.+.|.|+|.||. .+. .|
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~-----~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~-~~ 325 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKA-----CHHSQIMSEISDAGAVIVGSPTHNNGILPYVA-GT 325 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTT-----SCHHHHHHHHHTCSEEEEECCCBTTBCCHHHH-HH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEECCccCCCchHHHH-HH
Confidence 3566555554332 345567777787655444432 2233444445789999999963 577 77
Q ss_pred HHhccccCCCCceEEEEC
Q 024727 245 VNLISDTEQWSNSVACIA 262 (263)
Q Consensus 245 ~~~~~~~~~~~~~i~~IG 262 (263)
++.+....+.+.+++.+|
T Consensus 326 l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 326 LQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHTCCCSCEEEEEE
T ss_pred HHHhhhcccCCCEEEEEE
Confidence 776544334566666664
No 142
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=70.51 E-value=15 Score=30.41 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=49.5
Q ss_pred CCCCCCeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (263)
Q Consensus 46 ~~l~g~~ILitr~~--~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~ 119 (263)
..+.|++||||-.. .-...+++.|.+.|++|+..-. .. ...+++...+......+..+ +++...++.+++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r--~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDY--HE--RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecC--CH--HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 45789999999874 2457899999999998764311 00 01122233332322222333 378889988888
Q ss_pred HHHHc-CCCCcEEEEeC
Q 024727 120 AWKEA-GTPNVRIGVVG 135 (263)
Q Consensus 120 ~l~~~-~~~~~~i~aVG 135 (263)
.+.+. +.-+.-|.+.|
T Consensus 94 ~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 94 QTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCCcEEEECCC
Confidence 76553 22234444444
No 143
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=70.42 E-value=34 Score=29.70 Aligned_cols=136 Identities=8% Similarity=-0.072 Sum_probs=78.2
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCC
Q 024727 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (263)
Q Consensus 100 l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~ 178 (263)
..+.+.||-.+..........+.+. +++++..+.. .. +... .......|.. .....+++.+.+.. ..
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~-~~-~~~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYS-AK-LLVK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCC-GG-GTTS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccc-hh-hcCC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 3678998887766666777766665 5677765532 22 2122 2221223322 33455566665521 24
Q ss_pred cEEEEEcC-CC-----CchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHH--h--CCCCEEEEeCH-HHHHHHHHHh
Q 024727 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP-SAVRSSWVNL 247 (263)
Q Consensus 179 ~~vL~~~g-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--l--~~~d~vvFtS~-s~v~~~~~~~ 247 (263)
++|.++.+ +. ..+.+.+.|++.|+++.....|.... .+....... + .++|+|++.+. ..+. .+++.
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~~~l~~~~~dav~~~~~~~~~~-~~~~~ 218 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRA--TEADAERIAREMLAADPDYVWCGNTISSCS-LLGRA 218 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTC--CHHHHHHHHHHHHTTCCSEEEECSCHHHHH-HHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCC--cCHHHHHHHHHHHHcCCCEEEEecCcHHHH-HHHHH
Confidence 78888877 43 24567788889998876666665421 112222333 3 48998888765 5566 66665
Q ss_pred ccc
Q 024727 248 ISD 250 (263)
Q Consensus 248 ~~~ 250 (263)
+.+
T Consensus 219 ~~~ 221 (391)
T 3eaf_A 219 MAK 221 (391)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 144
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=70.19 E-value=7.5 Score=32.35 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=38.6
Q ss_pred cEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCee
Q 024727 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (263)
Q Consensus 129 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v 204 (263)
..++.-.-.|++.|++.+ ++.+ +.-..+.-++++.|.+....+++|.++....--..+...-.-.|.++
T Consensus 64 ~dVIISRGgta~~Lr~~~-----~iPV--V~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i 132 (225)
T 2pju_A 64 CDAIIAAGSNGAYLKSRL-----SVPV--ILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL 132 (225)
T ss_dssp CSEEEEEHHHHHHHHTTC-----SSCE--EEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCE
T ss_pred CeEEEeCChHHHHHHhhC-----CCCE--EEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCce
Confidence 334333336788888763 4444 33346777777777766555567777777665444433222234444
No 145
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=70.19 E-value=16 Score=31.23 Aligned_cols=84 Identities=12% Similarity=-0.058 Sum_probs=48.3
Q ss_pred CCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-cc
Q 024727 27 PLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FD 104 (263)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~-~d 104 (263)
.+-.++-+|+. |+..|.||.+|||-...+ ...+++.|.+.|++|...- . +.+.+++..++++. .-
T Consensus 12 ~~~~~n~~~~~------Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~------r-~~~~l~~~~~~~g~~~~ 78 (273)
T 4fgs_A 12 DLGTENLYFQS------MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITG------R-RKDVLDAAIAEIGGGAV 78 (273)
T ss_dssp -------------------CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE------S-CHHHHHHHHHHHCTTCE
T ss_pred Cccccccchhh------hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEE------C-CHHHHHHHHHHcCCCeE
Confidence 34445555555 456799999999987654 4679999999999987542 1 23445555544432 22
Q ss_pred EEE--EeCHHHHHHHHHHHHH
Q 024727 105 WII--ITSPEAGSVFLEAWKE 123 (263)
Q Consensus 105 ~Ii--FTS~~aV~~~~~~l~~ 123 (263)
.+. .|+...++.+++.+.+
T Consensus 79 ~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 79 GIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp EEECCTTCHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHH
Confidence 221 4788999988887654
No 146
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=69.87 E-value=19 Score=31.65 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=53.5
Q ss_pred HHHHHHHhccCC--CCCcEEEEEcCCCC------chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEe
Q 024727 164 GKILASELPKNG--KKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (263)
Q Consensus 164 ~e~L~~~l~~~~--~~~~~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFt 235 (263)
...+++...++. .+..+++++-+... -+.+.+.|.+.|+++..+.+.+. ..+.+.+.+.+.|.|+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-----~~~~~~~~l~~~d~iiig 314 (404)
T 2ohh_A 240 PMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-----DRSEIVKDILESGAIALG 314 (404)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-----CHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHhccCCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-----CHHHHHHHHHHCCEEEEE
Confidence 444444444321 23356655555432 24456677777877655554332 233444456789999999
Q ss_pred CH-------HHHHHHHHHhccccC---CCCceEEEEC
Q 024727 236 SP-------SAVRSSWVNLISDTE---QWSNSVACIA 262 (263)
Q Consensus 236 S~-------s~v~~~~~~~~~~~~---~~~~~i~~IG 262 (263)
|| ..++ .|++.+.... +.+.+++.+|
T Consensus 315 sP~y~~~~~~~~k-~~ld~l~~~~~~~l~~k~~~~~~ 350 (404)
T 2ohh_A 315 APTIYDEPYPSVG-DLLMYLRGLKFNRTLTRKALVFG 350 (404)
T ss_dssp CCEETTEECTHHH-HHHHHHHHHCGGGTCCEEEEEEE
T ss_pred CccccccchHHHH-HHHHHhhhccccccCCCEEEEEE
Confidence 98 4788 8887664321 2566666654
No 147
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=69.58 E-value=15 Score=30.38 Aligned_cols=82 Identities=11% Similarity=-0.023 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHH-
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA- 139 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta- 139 (263)
+-+.+.|+++|..+.....+......+ .+.+.+.+..-.++|+|+.++-. .-..++.+.+.+++++.++..+....
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~~ 237 (304)
T 3gbv_A 159 IGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLERN 237 (304)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHHH
T ss_pred HHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHHH
Confidence 446778888888776555443322222 24466666555689999999887 66788888888877888888875543
Q ss_pred HHHHHh
Q 024727 140 SIFEEV 145 (263)
Q Consensus 140 ~~L~~~ 145 (263)
..+-.-
T Consensus 238 ~~~~~~ 243 (304)
T 3gbv_A 238 VTCLKE 243 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 333345
No 148
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=69.43 E-value=22 Score=33.34 Aligned_cols=140 Identities=18% Similarity=0.177 Sum_probs=83.0
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEeC-hhH
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AGT 138 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~-~~~~~~~i~aVG-~~T 138 (263)
...++.+.|++.|+++..+.. .-...++ +.++.+.+.-+..++..-....+.+++ .+.+-....-+| ..|
T Consensus 171 D~~eikrlL~~~Gi~v~~~~p----gg~t~~e----i~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~~T 242 (525)
T 3aek_B 171 DVAEVTKLLATMGIKVNVCAP----LGASPDD----LRKLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGAT 242 (525)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE----TTCCHHH----HHTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHHHH
T ss_pred hHHHHHHHHHHCCCeEEEEeC----CCCCHHH----HHhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHHHH
Confidence 347899999999999987411 1112232 345677788888888766777777765 344433335678 667
Q ss_pred HHHHHHhhhhcCCCCceeecCC-CCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHH-HhCCCeeeEEeeec
Q 024727 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYT 211 (263)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~-~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L-~~~G~~v~~~~vY~ 211 (263)
.+.|++.. ...|... .... ..-..-+-..+......|+++++..+....--+...| .+.|++|..+-.|.
T Consensus 243 ~~~Lr~ia--~~~g~~~-~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~ 314 (525)
T 3aek_B 243 RDFLAEVS--KITGLPV-VTDESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYN 314 (525)
T ss_dssp HHHHHHHH--HHHCCCC-CCCCTTCCHHHHHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred HHHHHHHH--HHHCCCH-HHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCc
Confidence 77777651 1225543 2211 1111111111111223678999885554456677888 79999986665554
No 149
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=69.24 E-value=8 Score=35.10 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=50.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHHcCCCCcEEEEe
Q 024727 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVV 134 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~~~~~l~~~~~~~~~i~aV 134 (263)
++.+++.|.+.|.++..+.++..... + +...+..+.++|.|+|-||. .+..|+..+......+.++++.
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~~-~---~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~F 358 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEERP-A---ISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVF 358 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCCC-C---HHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeccCCCC-C---HHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEE
Confidence 35677778888998876655554322 2 23445567899999998885 6777777777766678888888
Q ss_pred Ch
Q 024727 135 GA 136 (263)
Q Consensus 135 G~ 136 (263)
|.
T Consensus 359 GS 360 (410)
T 4dik_A 359 GV 360 (410)
T ss_dssp EE
T ss_pred EC
Confidence 84
No 150
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=69.17 E-value=36 Score=31.69 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEece-------------EEeeeCC--CchHHHHHHhcCCCccEEEEeCHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEA 113 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~-------------~~~~~~~--~~~~l~~~l~~l~~~d~IiFTS~~a 113 (263)
..++|+|.....-...+.+.|.+.|.++..+.. +...... +.+.+++ . .+.++|.++.|....
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~-a-~i~~a~~vi~t~~D~ 203 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAG-L-RVAAARSIIANLSDP 203 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHH-T-TGGGCSEEEECSCHH
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHh-c-CcccCCEEEEeCCcH
Confidence 356788887766677888888888877665421 0111110 1111111 1 346789999988877
Q ss_pred HHHHHHHHHHcCCCCcEEEEe--ChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 114 GSVFLEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 114 V~~~~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
.....-..-+... +.++++. .+...+.|++. |.+..+.|+...+..|++.+.
T Consensus 204 ~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~ 257 (565)
T 4gx0_A 204 DNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRAT 257 (565)
T ss_dssp HHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhc
Confidence 6655443322222 6677765 56778889998 998767776666666665554
No 151
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=68.63 E-value=13 Score=32.23 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=89.0
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCc
Q 024727 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~~~~~l~~~~~~~~ 129 (263)
++|+++.+-. ++..+.|++.|+++...+. . ..+.+++.+ .+.++|.++..+...+ +.++..+ +++
T Consensus 1 ~~vl~~~~~~--~~~~~~l~~~g~~v~~~~~---~-~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~~~-----~~L 66 (311)
T 2cuk_A 1 MRVLVTRTLP--GKALDRLRERGLEVEVHRG---L-FLPKAELLK---RVEGAVGLIPTVEDRIDAEVMDRA-----KGL 66 (311)
T ss_dssp CEEEESSCCS--SSTTHHHHHTTCEEEECCS---S-CCCHHHHHH---HHTTCSEEECCTTSCBCHHHHHHS-----TTC
T ss_pred CEEEEeCCCC--HHHHHHHHhcCCeEEEecC---C-CCCHHHHHH---HhcCCeEEEEcCCCCCCHHHHhhC-----CCC
Confidence 3678876542 2234567777776653321 1 112233333 3468899886543111 1222222 345
Q ss_pred EEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc-------------------------------c
Q 024727 130 RIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-------------------------------K 173 (263)
Q Consensus 130 ~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~-------------------------------~ 173 (263)
++++. |-. -.+++++. |+.+...|. ++++.+++... .
T Consensus 67 k~i~~~~~G~d~id~~~~~~~------gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 139 (311)
T 2cuk_A 67 KVIACYSVGVDHVDLEAARER------GIRVTHTPG-VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG 139 (311)
T ss_dssp CEEECSSSCCTTBCHHHHHTT------TCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB
T ss_pred eEEEECCcCccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccC
Confidence 55542 221 24567788 988765554 44444443210 0
Q ss_pred CCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCC--ChHHHHHHhCCCCEEEEeCHHH
Q 024727 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 174 ~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~l~~~d~vvFtS~s~ 239 (263)
....|+++.++....-...+...|+..|.+| .+|.+..... ....+.+.+...|+|++.-|.+
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 204 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRV---VYHARTPKPLPYPFLSLEELLKEADVVSLHTPLT 204 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEE---EEECCCCcccccccCCHHHHHhhCCEEEEeCCCC
Confidence 1135678888876665677888999999765 4566544321 1112233345789999986654
No 152
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=68.62 E-value=18 Score=31.47 Aligned_cols=147 Identities=7% Similarity=-0.003 Sum_probs=82.0
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCc
Q 024727 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKC 179 (263)
Q Consensus 101 ~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~ 179 (263)
.+.|.||-.+..........+.+. +++++..+. +....... .......+.|.. .....+++.+.+.. ..+
T Consensus 74 ~~V~~iig~~s~~~~~~~~~~~~~---~iP~i~~~~-~~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~l~~~~-g~~ 144 (392)
T 3lkb_A 74 FKIPVFLSYATGANLQLKPLIQEL---RIPTIPASM-HIELIDPP----NNDYIFLPTTSYSEQVVALLEYIAREK-KGA 144 (392)
T ss_dssp TCCSCEEECCHHHHHHHHHHHHHH---TCCEEESCC-CGGGGSSS----SCTTBCEEECCHHHHHHHHHHHHHHHC-TTC
T ss_pred cCcEEEEeCCcHHHHHHHHHHHhC---CceEEeccc-ChhhccCC----CCCceEecCCChHHHHHHHHHHHHHhC-CCC
Confidence 478888887666666677777665 456666442 22211111 001111223332 33455666666532 348
Q ss_pred EEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEE-eCHHHHHHHHHHhccccC
Q 024727 180 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAV-ASPSAVRSSWVNLISDTE 252 (263)
Q Consensus 180 ~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvF-tS~s~v~~~~~~~~~~~~ 252 (263)
+|.++..+.. .+.+.+.|++.|+++.....|..... .....+.+.. .++|+|++ .+...+- .+++.+.+..
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-d~~~~~~~l~~~~~dav~~~~~~~~a~-~~~~~~~~~g 222 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNL-DNTALLKRFEQAGVEYVVHQNVAGPVA-NILKDAKRLG 222 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCC-CCHHHHHHHHHTTCCEEEEESCHHHHH-HHHHHHHHTT
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCc-CHHHHHHHHHhcCCCEEEEecCcchHH-HHHHHHHHcC
Confidence 8888876532 34678889999998876666654222 2222222222 58998885 6777777 7777765532
Q ss_pred CCCceEE
Q 024727 253 QWSNSVA 259 (263)
Q Consensus 253 ~~~~~i~ 259 (263)
.+.+++
T Consensus 223 -~~~~~~ 228 (392)
T 3lkb_A 223 -LKMRHL 228 (392)
T ss_dssp -CCCEEE
T ss_pred -CCceEE
Confidence 234443
No 153
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=68.50 E-value=12 Score=29.47 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=44.9
Q ss_pred EEEEEcCCCC----chhHHHHHHh---CCCeeeEEeeeccccC----------CCChHHHHHHhCCCCEEEEeCH-----
Q 024727 180 TVLYPASAKA----SNEIEEGLSN---RGFEVVRLNTYTTEPV----------HHVDQTVLKQALSIPVVAVASP----- 237 (263)
Q Consensus 180 ~vL~~~g~~~----~~~L~~~L~~---~G~~v~~~~vY~~~~~----------~~~~~~~~~~l~~~d~vvFtS~----- 237 (263)
+||++.|... ...+.+.+.+ .|.+|..+.+++ .+. +.....+.+.+...|.|+|.||
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~ 86 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYS 86 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccC
Confidence 5666666532 2334443322 356676666665 111 0111233444568999999995
Q ss_pred --HHHHHHHHHhcccc---CCCCceEEEEC
Q 024727 238 --SAVRSSWVNLISDT---EQWSNSVACIA 262 (263)
Q Consensus 238 --s~v~~~~~~~~~~~---~~~~~~i~~IG 262 (263)
..++ .|++.+... .+.+.+++.++
T Consensus 87 ~p~~lK-~~iD~~~~~~~~~l~gK~~~~~~ 115 (193)
T 1rtt_A 87 MAGVLK-NAIDWASRPPEQPFSGKPAAILG 115 (193)
T ss_dssp ECHHHH-HHHHHHTCSSSCTTTTCEEEEEE
T ss_pred cCHHHH-HHHHHhccccCcccCCCeEEEEE
Confidence 6788 888877532 24456665553
No 154
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=68.30 E-value=3.6 Score=34.18 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=44.7
Q ss_pred cEEEEEcCCCCc--------hhHHHHHHhCCCeeeEEeeeccccCCCC------------------------------hH
Q 024727 179 CTVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTEPVHHV------------------------------DQ 220 (263)
Q Consensus 179 ~~vL~~~g~~~~--------~~L~~~L~~~G~~v~~~~vY~~~~~~~~------------------------------~~ 220 (263)
.|||++-|.... +.+.+.|++.|.+|..+.+|+....+.. .+
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 567777665432 3456677778999999999985421100 11
Q ss_pred H---HHHHhCCCCEEEEeCH-------HHHHHHHHHhc
Q 024727 221 T---VLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (263)
Q Consensus 221 ~---~~~~l~~~d~vvFtS~-------s~v~~~~~~~~ 248 (263)
+ ..+.+...|.|+|.+| ..++ .|++.+
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK-~~iD~~ 118 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLYWFSVPAILK-GWMDRV 118 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHhCCEEEEECChhhcccCHHHH-HHHHHH
Confidence 2 2333468999999886 5678 888865
No 155
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=67.66 E-value=25 Score=23.86 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=62.4
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~~ 124 (263)
+++|++.-... ....+...|++.|+++... .+.++....+.. ..+|.+++-- .++.+ +++.+.+.
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~--------~~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~-~~~~l~~~ 70 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWL--------VDGSTALDQLDL-LQPIVILMAWPPPDQSCLL-LLQHLREH 70 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-HCCSEEEEECSTTCCTHHH-HHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------cCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHhc
Confidence 46788876553 3567888898889765432 223333333422 3689888753 23443 44555554
Q ss_pred C-CCCcEEEEeChhH-HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 125 G-TPNVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 125 ~-~~~~~i~aVG~~T-a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
. ..++++++++... ...+.+. |.. ++..+..+.+.|...+....
T Consensus 71 ~~~~~~~ii~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVDPLLTA------QAS-AILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCSSCCCEEEESSCCSSHHHHH------HCS-EECSSCSTTHHHHHHHHTTC
T ss_pred cccCCCCEEEEeCCCCchhhhhc------CHH-HhccCCCCHHHHHHHHHHHh
Confidence 3 2456666553322 1144455 665 46677778888887776543
No 156
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=67.65 E-value=9.7 Score=30.10 Aligned_cols=83 Identities=6% Similarity=-0.059 Sum_probs=48.6
Q ss_pred CeEEEeCCC----CChHHHHHHHHhC---CCcEEEeceEEeeeCCC--------chHHHHHHhcCCCccEEEEeCH----
Q 024727 51 PKVVVTRER----GKNGKLIKALAKH---RIDCLELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSP---- 111 (263)
Q Consensus 51 ~~ILitr~~----~~~~~l~~~L~~~---G~~v~~~p~~~~~~~~~--------~~~l~~~l~~l~~~d~IiFTS~---- 111 (263)
++|++.-.. .....+.+.+.+. |.++..+.+.+. |..+ .+.+....+.+.++|.|||-||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~-p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGI-PLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC-CCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHC-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 466655332 3456677766542 667777666542 2111 1234445555678999999995
Q ss_pred ---HHHHHHHHHHHHc---CCCCcEEEEe
Q 024727 112 ---EAGSVFLEAWKEA---GTPNVRIGVV 134 (263)
Q Consensus 112 ---~aV~~~~~~l~~~---~~~~~~i~aV 134 (263)
..++.|++.+... .+.+++++.+
T Consensus 86 ~~p~~lK~~iD~~~~~~~~~l~gK~~~~~ 114 (193)
T 1rtt_A 86 SMAGVLKNAIDWASRPPEQPFSGKPAAIL 114 (193)
T ss_dssp EECHHHHHHHHHHTCSSSCTTTTCEEEEE
T ss_pred CcCHHHHHHHHHhccccCcccCCCeEEEE
Confidence 5778888877542 1345555443
No 157
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=67.07 E-value=6.1 Score=31.95 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=37.3
Q ss_pred hHHHHHHhC--CCeeeEEeeeccccCCCC-------------------------hHHHHHHhCCCCEEEEeCH-------
Q 024727 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVLKQALSIPVVAVASP------- 237 (263)
Q Consensus 192 ~L~~~L~~~--G~~v~~~~vY~~~~~~~~-------------------------~~~~~~~l~~~d~vvFtS~------- 237 (263)
.+.+.|++. |.+|..+.+|+...+... ..++.+.+...|.|+|.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 455667666 889999999876432211 1122333568999999886
Q ss_pred HHHHHHHHHhc
Q 024727 238 SAVRSSWVNLI 248 (263)
Q Consensus 238 s~v~~~~~~~~ 248 (263)
..++ +|++.+
T Consensus 104 a~lK-~~iD~~ 113 (212)
T 3r6w_A 104 SGLK-AWIDQI 113 (212)
T ss_dssp HHHH-HHHHHH
T ss_pred HHHH-HHHHHH
Confidence 5788 888876
No 158
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=66.43 E-value=3.2 Score=33.72 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (263)
.+.|+++|||-...+ ...+++.|.+.|++|...---...-+.+.+.+++.++..+..|.+|..-
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nA 67 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTA 67 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECC
Confidence 467899999987654 4678999999998876542211111223445555555455667766543
No 159
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=66.30 E-value=59 Score=27.41 Aligned_cols=169 Identities=8% Similarity=0.061 Sum_probs=88.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (263)
.+.+.++++|+++..... ..+.+.....++. ...+|.|| .+...-. +.+ ...+++++++|.....
T Consensus 81 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~---~~l---~~~~iPvV~~~~~~~~- 147 (330)
T 3ctp_A 81 VIEEYAKNKGYTLFLCNT-----DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE---DEY---ANIDIPVVAFENHILD- 147 (330)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS---GGG---TTCCSCEEEESSCCCT-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH---HHH---HhcCCCEEEEeccCCC-
Confidence 345566778988764321 1222211122211 25799999 5432111 112 1236889998864321
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCCCCCcEEEEEcCCCCc-------hhHHHHHHhCCCeeeEEeeeccc
Q 024727 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~~~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.. .. +..+.+ .+...++.|.+. ..++|.++.|.... .-+.+.|++.|..+. ..+|...
T Consensus 148 --~~--------~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~ 213 (330)
T 3ctp_A 148 --NI--------IT-ISSDNYNGGRMAFDHLYEK--GCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHD 213 (330)
T ss_dssp --TS--------CE-EEECHHHHHHHHHHHHHHT--TCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSS
T ss_pred --CC--------CE-EEeCHHHHHHHHHHHHHHC--CCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCC
Confidence 12 11 222322 234455666664 34789999987542 235677888998776 3344322
Q ss_pred cCCCC----hHHHHHHhCCCCEEEEeCHHHHHHHHHHhccccC---CCCceEEEE
Q 024727 214 PVHHV----DQTVLKQALSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACI 261 (263)
Q Consensus 214 ~~~~~----~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~~~~~---~~~~~i~~I 261 (263)
..... ..++++. .++|+|+..+-..+. ..++.+.+.. ..++.|+.+
T Consensus 214 ~~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~disvvg~ 266 (330)
T 3ctp_A 214 FQVKMLEEDINSMKDI-VNYDGIFVFNDIAAA-TVMRALKKRGVSIPQEVQIIGF 266 (330)
T ss_dssp CCGGGGGCCCTTGGGG-GGSSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECS
T ss_pred CCHHHHHHHHHHHhcC-CCCcEEEECCHHHHH-HHHHHHHHcCCCCCCCeEEEEE
Confidence 11111 1122222 368999999887777 6666665432 235555543
No 160
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=66.29 E-value=52 Score=27.19 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=26.1
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.+.|++||||....+ ...+++.|.+.|++|+.+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999987654 467889999999987653
No 161
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=66.12 E-value=8.3 Score=31.92 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=44.5
Q ss_pred cEEEEEcCCCC------------chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCH-------HH
Q 024727 179 CTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SA 239 (263)
Q Consensus 179 ~~vL~~~g~~~------------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~-------s~ 239 (263)
.+||++-|-.. .+.+.+.|++.|.+|..+.+++. .+.++..+.+...|.|+|.+| ..
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~----~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~ 101 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQG----YDIESEIENYLWADTIIYQMPAWWMGEPWI 101 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGC----CCHHHHHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCc----cCHHHHHHHHHhCCEEEEECChHhccCCHH
Confidence 56888776642 13455667788999999888862 333444555679999999876 56
Q ss_pred HHHHHHHhc
Q 024727 240 VRSSWVNLI 248 (263)
Q Consensus 240 v~~~~~~~~ 248 (263)
++ .|++.+
T Consensus 102 lK-~~iD~v 109 (218)
T 3rpe_A 102 LK-KYIDEV 109 (218)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 77 777654
No 162
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=65.92 E-value=29 Score=27.88 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.++.|++||||-.... ...+.+.|.+.|++|..+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 4578999999987654 467899999999987643
No 163
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=65.85 E-value=29 Score=29.52 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=75.5
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCce--eecCCC-CCHHHHHHHhccCCC
Q 024727 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (263)
Q Consensus 101 ~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~t~e~L~~~l~~~~~ 176 (263)
...|.||-. +..........+.+. +++++..+.. ...+... +..- .+.|.. .....+++.+.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAEN---GILEITPAAT-NPVFTER------GLWNTFRTCGRDDQQGGIAGKYLADHF- 136 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHTT---TCEEEESSCC-CGGGGSS------CCTTEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHhC---CCeEEecCCC-CcHhhcC------CCCcEEEecCChHHHHHHHHHHHHHhc-
Confidence 688998854 445555566666554 5677765532 2223222 2211 122322 22344555555432
Q ss_pred CCcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEE-EeCHHHHHHHHHHhc
Q 024727 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAVRSSWVNLI 248 (263)
Q Consensus 177 ~~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vv-FtS~s~v~~~~~~~~ 248 (263)
..++|.++.++.. .+.+.+.|++.|+++.....|.....+ .......+ .++|+|+ +.+...+. .+++.+
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d--~~~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~ 213 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKD--FSALISKMKEAGVSIIYWGGLHTEAG-LIIRQA 213 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCC--CHHHHHHHHHTTCCEEEEESCHHHHH-HHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCC--HHHHHHHHHhcCCCEEEEccCchHHH-HHHHHH
Confidence 3478888877542 345778889999988666666533222 22233333 5889888 45566666 677766
Q ss_pred cc
Q 024727 249 SD 250 (263)
Q Consensus 249 ~~ 250 (263)
.+
T Consensus 214 ~~ 215 (356)
T 3ipc_A 214 AD 215 (356)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 164
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=65.76 E-value=8.4 Score=30.80 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.1
Q ss_pred hhHHHHHHhCC--CeeeEEeee--ccccCCCCh-----------------------------HHHHHHhCCCCEEEEeC-
Q 024727 191 NEIEEGLSNRG--FEVVRLNTY--TTEPVHHVD-----------------------------QTVLKQALSIPVVAVAS- 236 (263)
Q Consensus 191 ~~L~~~L~~~G--~~v~~~~vY--~~~~~~~~~-----------------------------~~~~~~l~~~d~vvFtS- 236 (263)
+.+.+.|++.| .+|..+.+| +...+.... ..+.+.+...|.|+|.|
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P 103 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANP 103 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEec
Confidence 34667777776 899999999 754322211 11233346899999998
Q ss_pred ------HHHHHHHHHHhcc
Q 024727 237 ------PSAVRSSWVNLIS 249 (263)
Q Consensus 237 ------~s~v~~~~~~~~~ 249 (263)
|..++ .|++.+.
T Consensus 104 ~y~~~~pa~lK-~~iD~~~ 121 (208)
T 2hpv_A 104 MWNLNVPTRLK-AWVDTIN 121 (208)
T ss_dssp CBTTBCCHHHH-HHHHHHC
T ss_pred cccCCCCHHHH-HHHHHHh
Confidence 57889 9998753
No 165
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=65.53 E-value=49 Score=29.21 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=47.1
Q ss_pred cEEEEEcCCCCc------hhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCH-------HHHHHHHH
Q 024727 179 CTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSSWV 245 (263)
Q Consensus 179 ~~vL~~~g~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~-------s~v~~~~~ 245 (263)
.+++++-+.... +.+.+.|.+.|+++..+.+.+. ....+.+.+.+.|.|+|.|| ..++ .|+
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k-~fl 330 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPTLNNTMMPSVA-AAL 330 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCCBTTBCCHHHH-HHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCccCcCchHHHH-HHH
Confidence 466665554331 3466677778877665555432 22234444668999999987 4678 888
Q ss_pred HhccccCC-CCceEEEEC
Q 024727 246 NLISDTEQ-WSNSVACIA 262 (263)
Q Consensus 246 ~~~~~~~~-~~~~i~~IG 262 (263)
+.+..... .+.+++.+|
T Consensus 331 d~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 331 NYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHTTTTTSBEEEEE
T ss_pred HHHHhhcccCCCEEEEEE
Confidence 77643223 456666554
No 166
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=65.46 E-value=70 Score=27.95 Aligned_cols=164 Identities=12% Similarity=0.072 Sum_probs=91.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~~~~~l~~~~~~~ 128 (263)
.++|+++.+. .+...+.|++.|+++...+ ..+.+++. ..+.++|.++..+...+ +.+++ . .++
T Consensus 26 ~~~vli~~~~--~~~~~~~l~~~~~~v~~~~------~~~~~~~~---~~~~~~d~li~~~~~~~~~~~l~---~--~~~ 89 (335)
T 2g76_A 26 LRKVLISDSL--DPCCRKILQDGGLQVVEKQ------NLSKEELI---AELQDCEGLIVRSATKVTADVIN---A--AEK 89 (335)
T ss_dssp CCEEEECSCC--CHHHHHHHHHHTCEEEECC------SCCHHHHH---HHGGGCSEEEECSSSCBCHHHHH---H--CSS
T ss_pred ceEEEEcCCC--CHHHHHHHHhCCCEEEECC------CCCHHHHH---HHhcCceEEEEcCCCCCCHHHHh---h--CCC
Confidence 4578988654 3556777888787655432 11233333 34568899887543211 12222 2 134
Q ss_pred cEEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh----c----c--------------------CC
Q 024727 129 VRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P----K--------------------NG 175 (263)
Q Consensus 129 ~~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l----~----~--------------------~~ 175 (263)
+++++. |-. -.+++++. |+.+...|. ++++.+++.. . + ..
T Consensus 90 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~ 162 (335)
T 2g76_A 90 LQVVGRAGTGVDNVDLEAATRK------GILVMNTPN-GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE 162 (335)
T ss_dssp CCEEEESSSSCTTBCHHHHHHH------TCEEECCSS-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCC
T ss_pred CcEEEECCCCcchhChHHHHhC------CeEEEECCC-ccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcC
Confidence 555542 222 23567888 998866663 4444433221 0 0 12
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCCh-------HHHHHHhCCCCEEEEeCHHH
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-------QTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-------~~~~~~l~~~d~vvFtS~s~ 239 (263)
..|+++.++.-..-...+.+.|+..|.+| .+|++....... ..+.+.+...|+|++.-|.+
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 230 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSFGMKT---IGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLL 230 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCC
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHCCCEE---EEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCC
Confidence 35678888876555567888999999765 456543321100 01233346889999887764
No 167
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=65.40 E-value=29 Score=29.10 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=28.0
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..++.|++||||-...+ ...+++.|.+.|++|+..
T Consensus 11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 11 LPSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp CCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 45688999999987654 467999999999987643
No 168
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=64.57 E-value=11 Score=27.84 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 024727 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~ 77 (263)
..+|.|++|++|..-. .++++.+.++++|+.+.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 4689999999998754 57899999999999876
No 169
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=64.56 E-value=11 Score=27.81 Aligned_cols=15 Identities=13% Similarity=0.198 Sum_probs=8.1
Q ss_pred CCCCCHHHHHHHhcc
Q 024727 159 PSKATGKILASELPK 173 (263)
Q Consensus 159 p~~~t~e~L~~~l~~ 173 (263)
....+.+.+++.|.+
T Consensus 7 S~tGnT~~iA~~ia~ 21 (138)
T 5nul_A 7 SGTGNTEKMAELIAK 21 (138)
T ss_dssp CSSSHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHH
Confidence 334556666655543
No 170
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=64.49 E-value=21 Score=29.81 Aligned_cols=87 Identities=8% Similarity=-0.057 Sum_probs=50.4
Q ss_pred cCCCCCCCeEEEeCCC--C-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHH
Q 024727 44 ASASNSNPKVVVTRER--G-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFL 118 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~--~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~ 118 (263)
.+..+.|++||||-.. . -...+++.|.+.|++|...-.- ...+.+++.........++. +++..+++.++
T Consensus 20 ~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 94 (280)
T 3nrc_A 20 HMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-----QFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLF 94 (280)
T ss_dssp --CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHH
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCc-----hHHHHHHHHHHhcCCceEEEeecCCHHHHHHHH
Confidence 3456889999999854 2 3567999999999987643211 11223333322333333332 37888999988
Q ss_pred HHHHHcC-CCCcEEEEeC
Q 024727 119 EAWKEAG-TPNVRIGVVG 135 (263)
Q Consensus 119 ~~l~~~~-~~~~~i~aVG 135 (263)
+.+.+.. .-+.-|.+.|
T Consensus 95 ~~~~~~~g~id~li~nAg 112 (280)
T 3nrc_A 95 VELGKVWDGLDAIVHSIA 112 (280)
T ss_dssp HHHHHHCSSCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCc
Confidence 8776542 1234444444
No 171
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=64.14 E-value=17 Score=30.18 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCC----------------C-ChHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRER----------------G-KNGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~----------------~-~~~~l~~~L~~~G~~v~~~ 79 (263)
+++.|++||||... . -...+++.|.+.|++|..+
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 35789999999873 3 4568999999999999864
No 172
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=64.13 E-value=8.5 Score=32.50 Aligned_cols=169 Identities=12% Similarity=0.134 Sum_probs=80.2
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-C
Q 024727 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-I 102 (263)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~ 102 (263)
.+..+.++-|+++ ++.++.|+++|||-...+ ...+++.|.+.|++|...-. ......+++...+...+ .
T Consensus 10 ~~~~~~~n~~~~~------mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (280)
T 4da9_A 10 GVDLGTENLYFQS------MMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI---GDAEGVAPVIAELSGLGAR 80 (280)
T ss_dssp -------------------CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHHTTCC
T ss_pred cccccccchhhhh------hhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHHHhcCCc
Confidence 3566777778877 456789999999988764 46799999999998764421 00001122222232221 2
Q ss_pred ccEEE--EeCHHHHHHHHHHHHHc-CCCCcEEEEeCh----------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHH
Q 024727 103 FDWII--ITSPEAGSVFLEAWKEA-GTPNVRIGVVGA----------GTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (263)
Q Consensus 103 ~d~Ii--FTS~~aV~~~~~~l~~~-~~~~~~i~aVG~----------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~ 169 (263)
..++. +++...++.+++.+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.-.+.++.
T Consensus 81 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~~ 153 (280)
T 4da9_A 81 VIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTI-------VGVNLRGTVFFTQAVLK 153 (280)
T ss_dssp EEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHH-------TTTHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHH-------HHHhhHHHHHHHHHHHH
Confidence 22221 36788888887766543 222444555553 134444444 22222221122234444
Q ss_pred HhccCC-CCCcEEEEEcCCCCc--------------------hhHHHHHHhCCCeeeEEee
Q 024727 170 ELPKNG-KKKCTVLYPASAKAS--------------------NEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 170 ~l~~~~-~~~~~vL~~~g~~~~--------------------~~L~~~L~~~G~~v~~~~v 209 (263)
.+.+.. ..+++|+++.+..+. ..|...|...|+.|..+.-
T Consensus 154 ~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~P 214 (280)
T 4da9_A 154 AMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRP 214 (280)
T ss_dssp HHHHHCCCCCEEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred HHHHhCCCCCCEEEEEcchhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEee
Confidence 444322 124678888775331 2244555567877765543
No 173
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=64.09 E-value=2.1 Score=34.72 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=40.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHH
Q 024727 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~~~~~l 121 (263)
+..+.+.+++.|.++..+.+++..+.. ..++....+.+..+|.|||.|| ..++.|++.+
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~-~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv 84 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQG-KIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEV 84 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTC-CCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCC-chhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHH
Confidence 455677777889999999888765432 2234455556678999999986 4456666554
No 174
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=63.85 E-value=8.9 Score=33.45 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=82.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HH--HHHHHHHHH-cCCCCcEEEEeChh
Q 024727 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AG--SVFLEAWKE-AGTPNVRIGVVGAG 137 (263)
Q Consensus 66 ~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~--aV--~~~~~~l~~-~~~~~~~i~aVG~~ 137 (263)
.+.+++.|++...+.+-+.. ..+++...+ ++....|.|+..-|- .+ +..++.+.. ...|+. ++.
T Consensus 59 ~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~-----~~~ 130 (300)
T 4a26_A 59 HKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADAL-----LPV 130 (300)
T ss_dssp HHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCC-----SHH
T ss_pred HHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccC-----Ccc
Confidence 45567889988766542211 234444444 445689999998872 11 222222211 112333 333
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCC-CchhHHHHHHhCCCeeeEEeeecccc
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~-~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
-...|-.- +....+.| -|..+.++.|.... ..|++++++...+ ...-+...|.+.|++|.-+.-+ |
T Consensus 131 N~G~l~~g------~~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~-T-- 199 (300)
T 4a26_A 131 NVGLLHYK------GREPPFTP--CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG-T-- 199 (300)
T ss_dssp HHHHHHCT------TCCCSCCC--HHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-S--
T ss_pred eEEEeecC------CCcCCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC-C--
Confidence 33333221 11122333 46778887777653 4789999998443 4556888888999987544321 1
Q ss_pred CCCChHHHH--HHhCCCCEEEEeCHH
Q 024727 215 VHHVDQTVL--KQALSIPVVAVASPS 238 (263)
Q Consensus 215 ~~~~~~~~~--~~l~~~d~vvFtS~s 238 (263)
. .+. +.+...|+|+-+-+.
T Consensus 200 --~---~l~l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 200 --S---TEDMIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp --C---HHHHHHHHHTCSEEEECSCC
T ss_pred --C---CchhhhhhccCCEEEECCCC
Confidence 1 222 444688999887763
No 175
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=63.47 E-value=3 Score=32.80 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=49.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeC--C-Cch--HHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEeC
Q 024727 62 NGKLIKALAKHRIDCLELPLIQHAQG--P-DTD--RLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~~~~~~--~-~~~--~l~~~l~~l~~~d~IiFTS~~a-V~~~~~~l~~~~~~~~~i~aVG 135 (263)
...+.+.|...|+++...|+.+.... + +.+ -.-..+...+.+|.+|..|+-+ ....++.+++. -+++++.+|
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~--~G~~V~v~g 140 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQR--YNKKVTVYG 140 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHH--HCCEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHHH--cCcEEEEEe
Confidence 45688999999999998887643211 1 111 1112222236788888887765 33334444442 046777777
Q ss_pred h--hHHHHHHHh
Q 024727 136 A--GTASIFEEV 145 (263)
Q Consensus 136 ~--~Ta~~L~~~ 145 (263)
. .|+..|++.
T Consensus 141 ~~~~~s~~L~~~ 152 (165)
T 2qip_A 141 VPRLTSQTLIDC 152 (165)
T ss_dssp CGGGSCHHHHHH
T ss_pred CCCcChHHHHHh
Confidence 4 367888877
No 176
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=63.42 E-value=9.6 Score=31.67 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=36.5
Q ss_pred CccEEEEeC---------HHHHHHHHHHHHHcC--CCCcEEEEeChhHHHHHHHhhhhcCCCCcee
Q 024727 102 IFDWIIITS---------PEAGSVFLEAWKEAG--TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (263)
Q Consensus 102 ~~d~IiFTS---------~~aV~~~~~~l~~~~--~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (263)
...+|++|| .|-++...+.+++.. ..++++++||.+....++.. |..+.
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i~ 116 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNVV 116 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCEE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCceE
Confidence 346999999 777777766654421 12568999999999999988 87653
No 177
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=63.39 E-value=52 Score=28.17 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=76.6
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCC-CCceeecCCC-CCHHHHHHHhccCCCC
Q 024727 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKC-SLDVAFSPSK-ATGKILASELPKNGKK 177 (263)
Q Consensus 101 ~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~-G~~~~~~p~~-~t~e~L~~~l~~~~~~ 177 (263)
.+.+.||-. ++.........+.+. +++++..+..+ ..+... .+ .....+.+.. .....+++.+.+. .
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~-~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~l~~~--g 139 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEK---KKVYINIGAGA-DTLTNE----QCTPYTVHYAYDTMALAKGTGSAVVKQ--G 139 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHH---TCEEEECSCCC-GGGGTT----TCCTTEEECSCCHHHHHHHHHHHHHHT--T
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHc---CceEEEeCCCc-hhhhcc----cCCCcEEEeeCChHHHHHHHHHHHHHc--C
Confidence 578888854 455555666666655 56777765332 223221 00 1111122322 2245566666654 3
Q ss_pred CcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEEeCH-HHHHHHHHHhccc
Q 024727 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASP-SAVRSSWVNLISD 250 (263)
Q Consensus 178 ~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvFtS~-s~v~~~~~~~~~~ 250 (263)
.++|.++..+.. .+.+.+.|++.|.+|.....|..... +....+.+.. .++|+|++.+. ..+. .+++.+.+
T Consensus 140 ~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-d~~~~l~~i~~~~~d~v~~~~~~~~~~-~~~~~~~~ 217 (375)
T 3i09_A 140 GKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSAS-DFSSFLLQAQSSKAQILGLANAGGDTV-NAIKAAKE 217 (375)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCS-CCHHHHHHHHHTCCSEEEEECCHHHHH-HHHHHHHH
T ss_pred CceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCc-cHHHHHHHHHhCCCCEEEEecCchhHH-HHHHHHHH
Confidence 578888866543 35677889999998876666654322 2222233222 58898866554 3566 66666654
Q ss_pred c
Q 024727 251 T 251 (263)
Q Consensus 251 ~ 251 (263)
.
T Consensus 218 ~ 218 (375)
T 3i09_A 218 F 218 (375)
T ss_dssp T
T ss_pred c
Confidence 3
No 178
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=63.08 E-value=15 Score=30.12 Aligned_cols=90 Identities=9% Similarity=0.078 Sum_probs=55.7
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE--eCHHH-----HHHH
Q 024727 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII--TSPEA-----GSVF 117 (263)
Q Consensus 50 g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiF--TS~~a-----V~~~ 117 (263)
+.+|++..+.. +..-+...|+..|++|+++..- .| .+.+-+...+ .++|.|.. ++..+ ++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~--vp---~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~~ 165 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD--VL---NENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKDL 165 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS--CC---HHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC--CC---HHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHHH
Confidence 45777766542 2346778889999999987652 12 2334333323 46788777 54332 4556
Q ss_pred HHHHHHcCC-CCcEEEEeChhHHHHHHHh
Q 024727 118 LEAWKEAGT-PNVRIGVVGAGTASIFEEV 145 (263)
Q Consensus 118 ~~~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 145 (263)
.+.+++.+. +++++++-|....+.+.+.
T Consensus 166 i~~l~~~~~~~~v~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 166 MDRLNEEKLRDSVKCMFGGAPVSDKWIEE 194 (215)
T ss_dssp HHHHHHTTCGGGSEEEEESSSCCHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHH
Confidence 666777665 4789998887555444443
No 179
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=63.01 E-value=36 Score=29.31 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=77.7
Q ss_pred CCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCC-CCceeecCCC-CCHHHHHHHhccCCCC
Q 024727 101 TIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKC-SLDVAFSPSK-ATGKILASELPKNGKK 177 (263)
Q Consensus 101 ~~~d~Ii-FTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~-G~~~~~~p~~-~t~e~L~~~l~~~~~~ 177 (263)
.+.+.|| ..++.........+.+. +++++..+..+ ..+... .+ .....+.+.. .....+++.+.+. .
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~-~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~l~~~--g 141 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDK---KKLAFITAAAA-DQIGGT----ECNGYGIGFLYNFTSIVKTVVQAQLAK--G 141 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHH---TCEEEECSCCC-TTTTTT----TCCSSEEECSCCHHHHHHHHHHHHHHT--T
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHc---CceEEEcCCCc-hhhhcc----cCCCcEEEEeCChHHHHHHHHHHHHHc--C
Confidence 5788888 34555556666666665 56777765432 223221 00 1111122322 1245566666654 3
Q ss_pred CcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEEeCH-HHHHHHHHHhccc
Q 024727 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASP-SAVRSSWVNLISD 250 (263)
Q Consensus 178 ~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvFtS~-s~v~~~~~~~~~~ 250 (263)
.++|.++..+.. .+.+.+.|++.|.+|.....|.....+ ....+.+.. .++|+|++.+. ..+. .+++.+.+
T Consensus 142 ~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d-~~~~l~~i~~~~~d~v~~~~~~~~~~-~~~~~~~~ 219 (379)
T 3n0w_A 142 YKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQD-FSSYLLQAKASGAQLIVSTSGGAANI-NIMKQARE 219 (379)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCC-CHHHHHHHHHHTCSEEEECCCHHHHH-HHHHHHHH
T ss_pred CcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCC-HHHHHHHHHHCCCCEEEEecccchHH-HHHHHHHH
Confidence 578888866543 456778888999988776666643322 222222221 48898877655 5566 67666654
Q ss_pred c
Q 024727 251 T 251 (263)
Q Consensus 251 ~ 251 (263)
.
T Consensus 220 ~ 220 (379)
T 3n0w_A 220 F 220 (379)
T ss_dssp T
T ss_pred c
Confidence 3
No 180
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=62.97 E-value=34 Score=29.25 Aligned_cols=143 Identities=9% Similarity=0.083 Sum_probs=78.3
Q ss_pred CCccEEEE-eCHHHHHHHHH--HHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCC
Q 024727 101 TIFDWIII-TSPEAGSVFLE--AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 176 (263)
Q Consensus 101 ~~~d~IiF-TS~~aV~~~~~--~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~ 176 (263)
...+.||- .+......... .+.+. +++++..+... ..+... .....+.|.. .....+++.+.+.
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~------~~~f~~~~~~~~~~~~~~~~l~~~-- 139 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEA---RLPLVGPATGA-SSMTTD------PLVFPIKASYQQEIDKMITALVTI-- 139 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHH---TCCEESCSCCC-GGGGSC------TTEECCSCCHHHHHHHHHHHHHHT--
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhc---CCcEEEcccCc-HhhccC------CcEEEeCCChHHHHHHHHHHHHHc--
Confidence 47888885 34555566666 66665 45566554322 222112 2211122322 2345566666643
Q ss_pred CCcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeC-HHHHHHHHHHhc
Q 024727 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSSWVNLI 248 (263)
Q Consensus 177 ~~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS-~s~v~~~~~~~~ 248 (263)
..++|.++.++.. .+.+.+.|++.|+++.....|.....+ . ......+ .++|+|++.+ ...+. .+++.+
T Consensus 140 g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d-~-~~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~ 216 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTAN-V-GPAVDKLLAADVQAIFLGATAEPAA-QFVRQY 216 (364)
T ss_dssp TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCC-C-HHHHHHHHHSCCSEEEEESCHHHHH-HHHHHH
T ss_pred CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCcc-H-HHHHHHHHhCCCCEEEEecCcHHHH-HHHHHH
Confidence 3478888876542 346778899999988766666543222 2 2223333 5889888844 66666 777766
Q ss_pred cccCCCCceEE
Q 024727 249 SDTEQWSNSVA 259 (263)
Q Consensus 249 ~~~~~~~~~i~ 259 (263)
.+.. .+.+++
T Consensus 217 ~~~g-~~~~~i 226 (364)
T 3lop_A 217 RARG-GEAQLL 226 (364)
T ss_dssp HHTT-CCCEEE
T ss_pred HHcC-CCCeEE
Confidence 5432 234444
No 181
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=62.72 E-value=11 Score=29.24 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHHHHHHcCCCCcEEEEeCh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-----V~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
.+++.|++.|.++..+.+ ....+.. ..+..+.++|.|||-||.= ...|+..+......+.++++.|.
T Consensus 24 ~ia~~l~~~g~~v~~~~~---~~~~~~~---~~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 24 AIINGITKTGVGVDVVDL---GAAVDLQ---ELRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHTTCEEEEEES---SSCCCHH---HHHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHCCCeEEEEEC---cCcCCHH---HHHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEc
Confidence 345555667876654433 2110222 2233446799999998731 13555555555556778888873
No 182
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=62.55 E-value=12 Score=32.11 Aligned_cols=113 Identities=18% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~ 123 (263)
....|++|.+..-- .+.+.+.+.+.++..+ +..|.+. .+.....+ +...|++++|...=+..-+..+-+
T Consensus 137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~---E~~p~~g~~p~~~~~~~--lp~~D~viiTgstlvN~Tl~~lL~ 207 (270)
T 3l5o_A 137 NEVKGKKVGVVGHF----PHLESLLEPICDLSIL---EWSPEEGDYPLPASEFI--LPECDYVYITCASVVDKTLPRLLE 207 (270)
T ss_dssp TTTTTSEEEEESCC----TTHHHHHTTTSEEEEE---ESSCCTTCEEGGGHHHH--GGGCSEEEEETHHHHHTCHHHHHH
T ss_pred cccCCCEEEEECCc----hhHHHHHhcCCCEEEE---ECCCCCCCCChhHHHHh--hccCCEEEEEeehhhcCCHHHHHh
Confidence 34568999998543 2344555666655433 3344332 12222223 578999999999988776666655
Q ss_pred cCCCCcEEEEeChhHHH--HHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 124 AGTPNVRIGVVGAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~--~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.......++.+||.|-- .|-++ |++..---.--+.+.+.+.+.+
T Consensus 208 ~~~~a~~vvl~GPStp~~P~lf~~------Gv~~laG~~V~d~~~~~~~i~~ 253 (270)
T 3l5o_A 208 LSRNARRITLVGPGTPLAPVLFEH------GLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp HTTTSSEEEEESTTCCCCGGGGGT------TCSEEEEEEESCHHHHHHHHTT
T ss_pred hCCCCCEEEEECCCchhhHHHHhc------CcCEEEEEEEcCHHHHHHHHhc
Confidence 54445678899997641 23344 7765221122467777777754
No 183
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=62.44 E-value=39 Score=24.00 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~ 123 (263)
.+.+||+.-... ....+.+.|++.|+.+... .+.++....+.. ..+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~ 75 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSA--------GDGEEGERLFGL-HAPDVIITDIRMPKLGGLE-MLDRIKA 75 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEE--------SSHHHHHHHHHH-HCCSEEEECSSCSSSCHHH-HHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEE--------CCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 356899887654 3456888888877665433 233333334432 4688888753 23444 3444555
Q ss_pred cCCCCcEEEEeChh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 124 AGTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 124 ~~~~~~~i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
.. .+.+++++... ....+.+. |.. ++.++..+.+.|.+.+.+.
T Consensus 76 ~~-~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~ 122 (137)
T 3hdg_A 76 GG-AKPYVIVISAFSEMKYFIKAIEL------GVH-LFLPKPIEPGRLMETLEDF 122 (137)
T ss_dssp TT-CCCEEEECCCCCCHHHHHHHHHH------CCS-EECCSSCCHHHHHHHHHHH
T ss_pred cC-CCCcEEEEecCcChHHHHHHHhC------Ccc-eeEcCCCCHHHHHHHHHHH
Confidence 43 46777776543 33344456 776 4777878999998887654
No 184
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=62.30 E-value=39 Score=23.98 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=62.4
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLE 119 (263)
Q Consensus 46 ~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-----S~~aV~~~~~ 119 (263)
.+..+.+||+.-... ....+...|++.|+++... ..+.++....+.. ..+|.|++- ..++.+ +++
T Consensus 5 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-------~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~-~~~ 75 (140)
T 3cg0_A 5 ASDDLPGVLIVEDGRLAAATLRIQLESLGYDVLGV-------FDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVE-TAA 75 (140)
T ss_dssp ---CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEE-------ESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHH-HHH
T ss_pred cCCCCceEEEEECCHHHHHHHHHHHHHCCCeeEEE-------ECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHH-HHH
Confidence 455678999986653 3467888888888876421 1223333333422 468998875 235554 344
Q ss_pred HHHHcCCCCcEEEEe-ChhHHH---HHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 120 AWKEAGTPNVRIGVV-GAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 120 ~l~~~~~~~~~i~aV-G~~Ta~---~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.+... .+++++++ +..... .+.+. |.. ++..+..+.+.|...+..
T Consensus 76 ~l~~~--~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~~ 124 (140)
T 3cg0_A 76 RLAAG--CNLPIIFITSSQDVETFQRAKRV------NPF-GYLAKPVAADTLHRSIEM 124 (140)
T ss_dssp HHHHH--SCCCEEEEECCCCHHHHHHHHTT------CCS-EEEEESCCHHHHHHHHHH
T ss_pred HHHhC--CCCCEEEEecCCCHHHHHHHHhc------CCC-EEEeCCCCHHHHHHHHHH
Confidence 45544 45666655 333322 33344 665 366666788888877754
No 185
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=62.03 E-value=27 Score=29.16 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 48 l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
+.||++|||-...+ ...+++.|.+.|++|...
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~ 41 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVAL 41 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 47999999987654 467999999999998754
No 186
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=61.97 E-value=37 Score=30.91 Aligned_cols=140 Identities=12% Similarity=0.079 Sum_probs=81.1
Q ss_pred eEEEeCCCCCh--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024727 52 KVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (263)
Q Consensus 52 ~ILitr~~~~~--~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~ 129 (263)
+|-+.-.-... +++.+.|++.|+++..++.- ...++ ++.++..+..+..++..- ...+.+++.. ++
T Consensus 198 ~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~~-----~~~~e----l~~~~~A~~ni~~~~~~~-~~A~~Le~~~--gi 265 (460)
T 2xdq_A 198 PLVLFGSLPDPVVTQLTLELKKQGIKVSGWLPA-----KRYTE----LPVIDEGYYVAGVNPFLS-RTATTLIRRR--KC 265 (460)
T ss_dssp CEEEESCCCHHHHHHHHHHHGGGTCCEEEEESC-----SSGGG----CCCCCTTCEEEESSTTCH-HHHHHHHHTT--CC
T ss_pred cEEEEEecCccHHHHHHHHHHHcCCeEEEEeCC-----CCHHH----HHccccCcEEEEcCHhHH-HHHHHHHHHc--CC
Confidence 45454433333 46899999999999864221 22222 335566677776666553 4445554431 33
Q ss_pred EEEE----eC-hhHHHHHHHhhhhcCCCCceeecCCCCC--HHHHHHHhccC--CCCCcEEEEEcCCCCchhHHHHHHhC
Q 024727 130 RIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (263)
Q Consensus 130 ~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~t--~e~L~~~l~~~--~~~~~~vL~~~g~~~~~~L~~~L~~~ 200 (263)
+.+. +| ..|.+.|++.. ...|.. |+... -..+.+.+.+. ...|+++++..+....--+...|.+.
T Consensus 266 P~~~~~~P~G~~~T~~~Lr~ia--~~~g~~----~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~el 339 (460)
T 2xdq_A 266 QLITAPFPIGPDGTRTWIEQIC--ATFGIQ----PQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIRC 339 (460)
T ss_dssp EEECCCCSBHHHHHHHHHHHHH--HHTTCC----CCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHHT
T ss_pred CceecCcCccHHHHHHHHHHHH--HHHCcC----HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHHC
Confidence 4433 55 67888888761 223543 22211 11222333221 12678999987777677788999999
Q ss_pred CCeeeEEee
Q 024727 201 GFEVVRLNT 209 (263)
Q Consensus 201 G~~v~~~~v 209 (263)
|+++..+-+
T Consensus 340 Gm~vv~~gt 348 (460)
T 2xdq_A 340 GMRVLEIGI 348 (460)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEeCC
Confidence 999877543
No 187
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=61.69 E-value=74 Score=27.62 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=89.0
Q ss_pred CeEEEeCCCCChHHHHHHHHh-C-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCC
Q 024727 51 PKVVVTRERGKNGKLIKALAK-H-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~-~-G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~~~~~l~~~~~~ 127 (263)
++|+++..........+.|++ . |+++...+-. .. ++ ....+.++|.++..+...+ +.+++.+.+.
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~--~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~--- 69 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LT--PE---TVALAKGADGVVVYQQLDYIAETLQALADN--- 69 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CC--TT---TGGGGTTCSEEEECCSSCBCHHHHHHHHHT---
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----Cc--HH---HHHHhcCCcEEEEcCCCCCCHHHHHhcccc---
Confidence 578887554444555566664 3 5565443321 11 11 1223578999887542211 2344444432
Q ss_pred CcEEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hc----------------c--------C
Q 024727 128 NVRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LP----------------K--------N 174 (263)
Q Consensus 128 ~~~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~----------------~--------~ 174 (263)
++|+++. |-. -.+++++. |+.+...|. ++.+.+++. +. + .
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~ 142 (333)
T 1j4a_A 70 GITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333)
T ss_dssp TCCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC
T ss_pred CCeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccc
Confidence 2444432 222 24567888 998866664 454444322 10 0 0
Q ss_pred CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCC------ChHHHHHHhCCCCEEEEeCHHH
Q 024727 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 175 ~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~------~~~~~~~~l~~~d~vvFtS~s~ 239 (263)
...|+++.++....-...+.+.|+..|++| .+|++..... ....+.+.+...|+|++.-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 210 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKV---ITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEE---EEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCc
Confidence 124678888876665667888999999865 4555433210 0001222235789999887743
No 188
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=61.51 E-value=12 Score=28.78 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH---H--HHHHHHHHHcCCCCcEEEEeC
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA---G--SVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a---V--~~~~~~l~~~~~~~~~i~aVG 135 (263)
.+.+.|++.|.++..+.+-+ .+.. ..+..+.++|.|||-||.= + ..|+..+....+.+.+++++|
T Consensus 20 ~ia~~l~~~g~~v~~~~~~~----~~~~---~~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fg 89 (161)
T 3hly_A 20 AIGRGLVKTGVAVEMVDLRA----VDPQ---ELIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFD 89 (161)
T ss_dssp HHHHHHHHTTCCEEEEETTT----CCHH---HHHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEEC
T ss_pred HHHHHHHhCCCeEEEEECCC----CCHH---HHHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEE
Confidence 34555666787765443321 1222 2222345799999988731 1 456666655445677888877
No 189
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=61.33 E-value=7.1 Score=32.96 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=37.9
Q ss_pred CCCeEEEeCC--CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 024727 49 SNPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (263)
Q Consensus 49 ~g~~ILitr~--~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (263)
.+++|++.+. .+....+...|++.|+++..+.++...+.+. .+.++|.||++-.
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~---------~~~~~d~lIl~GG 57 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA---------EIRDCSGLAMMGG 57 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS---------CGGGSSEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC---------ccccCCEEEECCC
Confidence 3678888864 3556789999999999988776655432221 2457899998754
No 190
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=61.14 E-value=44 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.++.|++||||-.... ...+.+.|.+.|++|...
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999987654 467889999999987643
No 191
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=60.54 E-value=20 Score=32.95 Aligned_cols=153 Identities=11% Similarity=0.037 Sum_probs=86.2
Q ss_pred CCeEEEe-CC---CCChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024727 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (263)
Q Consensus 50 g~~ILit-r~---~~~~~~l~~~L~~~G~~v~~~p~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (263)
..+|-|. -. .....++.+.|++.|+++..+|-+. ..+.-+ ..+++ ++++.+.+.-+..++.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~ni~~~~~ 246 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVAE-LATAGQSVATLVVGQS 246 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHHH-HGGGSSCSCEEEESGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHHH-HHhhhhCcEEEEecHH
Confidence 3455554 33 2235789999999999999876431 011111 11222 3456666666677877
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeC-----hhHHHHHHHhhhhcCCCCceeecCCCCC--HHHHHHHhccC--CCCCcEEEE
Q 024727 113 AGSVFLEAWKEAGTPNVRIGVVG-----AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLY 183 (263)
Q Consensus 113 aV~~~~~~l~~~~~~~~~i~aVG-----~~Ta~~L~~~~~~~~~G~~~~~~p~~~t--~e~L~~~l~~~--~~~~~~vL~ 183 (263)
. ....+.+++.. +++++.++ ..|.+.|++.. ...|..+ |+... -..+++.+.+. ...|+|+.+
T Consensus 247 ~-~~~A~~Le~~~--GiP~~~~~~p~G~~~T~~~l~~la--~~~g~~~---~~~i~~er~r~~~~~~d~~~~l~Gkrv~i 318 (458)
T 3pdi_B 247 L-AGAADALAERT--GVPDRRFGMLYGLDAVDAWLMALA--EISGNPV---PDRYKRQRAQLQDAMLDTHFMLSSARTAI 318 (458)
T ss_dssp G-HHHHHHHHHHS--CCCEEEECCSCHHHHHHHHHHHHH--HHHSSCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHHH--CCCEEecCCCcCHHHHHHHHHHHH--HHHCCch---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5 45566666531 34555543 45677776651 1115432 11100 01133333331 135789998
Q ss_pred EcCCCCchhHHHHHHhCCCeeeEEeeecc
Q 024727 184 PASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 184 ~~g~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
..+..-.--+...|.+.|+++..+.++..
T Consensus 319 ~~~~~~~~~l~~~L~elGm~vv~~~~~~~ 347 (458)
T 3pdi_B 319 AADPDLLLGFDALLRSMGAHTVAAVVPAR 347 (458)
T ss_dssp ECCHHHHHHHHHHHHTTTCEEEEEEESSC
T ss_pred ECCcHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 76654444578899999999988887763
No 192
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=59.41 E-value=15 Score=26.81 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEeCCCC--ChHHHHHHHHhCCCcEE
Q 024727 45 SASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~--~~~~l~~~L~~~G~~v~ 77 (263)
..++.|++|++|..-. .++++.+.++++|+.|.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 3579999999998764 58899999999999876
No 193
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=59.04 E-value=33 Score=27.45 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHhCCCCEEEEeCH-------HHHHHHHHHhccc----cCCCCceEEEEC
Q 024727 222 VLKQALSIPVVAVASP-------SAVRSSWVNLISD----TEQWSNSVACIA 262 (263)
Q Consensus 222 ~~~~l~~~d~vvFtS~-------s~v~~~~~~~~~~----~~~~~~~i~~IG 262 (263)
+.+.+...|.++|.|| ..++ ++++.+.. ..+.+++++.+|
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LK-n~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIK-NAIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHH-HHHHHHHCSTTCCTTTTCEEEEEE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHH-HHHHHhcccccCCccCCCEEEEEE
Confidence 4444679999999997 5778 88887632 225567776653
No 194
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=59.03 E-value=10 Score=29.41 Aligned_cols=27 Identities=11% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHHhCCCCEEEEeCH-------HHHHHHHHHhc
Q 024727 221 TVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (263)
Q Consensus 221 ~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~ 248 (263)
.+.+.+...|.|+|.|| ..++ .|++.+
T Consensus 64 ~~~~~l~~aD~ii~~~P~y~~~~p~~lK-~~iD~~ 97 (184)
T 1rli_A 64 SIIERILQCHILIFATPIYWFGMSGTLK-LFIDRW 97 (184)
T ss_dssp HHHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHTH
T ss_pred HHHHHHHhCCEEEEEeCccccCCcHHHH-HHHHHh
Confidence 34555679999999995 6788 888865
No 195
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=58.97 E-value=17 Score=28.55 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=36.8
Q ss_pred hHHHHHHhCC--CeeeEEeeeccccCCCC---------------h---------HHHHHHhCCCCEEEEeCH-------H
Q 024727 192 EIEEGLSNRG--FEVVRLNTYTTEPVHHV---------------D---------QTVLKQALSIPVVAVASP-------S 238 (263)
Q Consensus 192 ~L~~~L~~~G--~~v~~~~vY~~~~~~~~---------------~---------~~~~~~l~~~d~vvFtS~-------s 238 (263)
.+.+.|++.| .+|..+.+|+...+... . ..+.+.+...|.|+|.|| .
T Consensus 24 ~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~~~p~ 103 (201)
T 1t5b_A 24 YFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPT 103 (201)
T ss_dssp HHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTTBCCH
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccCcCCH
Confidence 4455676665 78888888875332111 1 112334568999999995 5
Q ss_pred HHHHHHHHhcc
Q 024727 239 AVRSSWVNLIS 249 (263)
Q Consensus 239 ~v~~~~~~~~~ 249 (263)
.++ .|++.+.
T Consensus 104 ~lK-~~iD~~~ 113 (201)
T 1t5b_A 104 QLK-NYFDLIA 113 (201)
T ss_dssp HHH-HHHHHHC
T ss_pred HHH-HHHHHhe
Confidence 788 8888764
No 196
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=58.62 E-value=10 Score=28.46 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeCHH----------HHHHHHHHHHHcCCCCcEEEE
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITSPE----------AGSVFLEAWKEAGTPNVRIGV 133 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~IiFTS~~----------aV~~~~~~l~~~~~~~~~i~a 133 (263)
+.+.|++.|+++..+++-+.. . ..+. ++|.|||-+|. .+..|++.+....+.+.++++
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~----~-------~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~v 90 (148)
T 3f6r_A 22 LEELIAAGGHEVTLLNAADAS----A-------ENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAA 90 (148)
T ss_dssp HHHHHHTTTCEEEEEETTTBC----C-------TTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEE
T ss_pred HHHHHHhCCCeEEEEehhhCC----H-------hHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEE
Confidence 444455667766554432221 1 1345 89988887743 466676655443455677776
Q ss_pred eC
Q 024727 134 VG 135 (263)
Q Consensus 134 VG 135 (263)
+|
T Consensus 91 fg 92 (148)
T 3f6r_A 91 FA 92 (148)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 197
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=58.50 E-value=80 Score=26.35 Aligned_cols=137 Identities=9% Similarity=0.092 Sum_probs=76.5
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCC--ceeecCCC-CCHHHHHHHhccCCC
Q 024727 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSL--DVAFSPSK-ATGKILASELPKNGK 176 (263)
Q Consensus 101 ~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~--~~~~~p~~-~t~e~L~~~l~~~~~ 176 (263)
...|.||.. +..........+.+. ++++++.+... ..+... +. ...+.|.. .....+++.+.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDE---GILMISPGATN-PELTQR------GYQHIMRTAGLDSSQGPTAAKYILETV- 136 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHH---TCEEEECCCCC-GGGGSS------CCSSEEECSCCGGGHHHHHHHHHHHTT-
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHC---CCeEEeeCCCC-hHHhcC------CCCcEEeccCChHHHHHHHHHHHHHhc-
Confidence 578998875 344445555655554 56787776432 223221 21 11223333 33456667765532
Q ss_pred CCcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEEeC-HHHHHHHHHHhcc
Q 024727 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVAS-PSAVRSSWVNLIS 249 (263)
Q Consensus 177 ~~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvFtS-~s~v~~~~~~~~~ 249 (263)
..++|.++.++.. .+.+.+.|++.|+++.....|.... ......+.+.. .++|+|++.+ ...+. .+++.+.
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~~~~l~~~~~d~i~~~~~~~~a~-~~~~~~~ 214 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGE-KDFSALIARLKKENIDFVYYGGYYPEMG-QMLRQAR 214 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTC-CCCHHHHHHHHHTTCCEEEEESCHHHHH-HHHHHHH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCC-cCHHHHHHHHHhcCCCEEEEcCcchHHH-HHHHHHH
Confidence 2478888887542 2456778889999876544453221 12222222222 4789999888 56666 6766665
Q ss_pred c
Q 024727 250 D 250 (263)
Q Consensus 250 ~ 250 (263)
+
T Consensus 215 ~ 215 (346)
T 1usg_A 215 S 215 (346)
T ss_dssp H
T ss_pred H
Confidence 4
No 198
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=58.44 E-value=8.6 Score=33.12 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=46.3
Q ss_pred cEEEEEcCCCC--------chhHHHHHHhCCCeeeEEeeeccccCCCC--------------------------------
Q 024727 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------------------------------- 218 (263)
Q Consensus 179 ~~vL~~~g~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-------------------------------- 218 (263)
=|||++-|--. .+.+.+.|++.|.+|+.+.+|+....+..
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 102 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSAD 102 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHH
Confidence 46777766432 24567788999999999999986553211
Q ss_pred hHHHHHHhCCCCEEEEeC-------HHHHHHHHHHhc
Q 024727 219 DQTVLKQALSIPVVAVAS-------PSAVRSSWVNLI 248 (263)
Q Consensus 219 ~~~~~~~l~~~d~vvFtS-------~s~v~~~~~~~~ 248 (263)
.....+.+...|.|||.+ |..++ .|++.+
T Consensus 103 v~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK-~~iDrv 138 (280)
T 4gi5_A 103 IVAEQEKLLWADTVIFQFPLWWFSMPAIMK-GWIDRV 138 (280)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcHHHH-HHHHHh
Confidence 011122245789999876 57888 888765
No 199
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=58.29 E-value=4.5 Score=32.41 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred CeEEEeCCC----CChHHHHHH-----HHhCCCcEEEeceEEeee------CCCchHHHHHHhcCCCccEEEEeCH----
Q 024727 51 PKVVVTRER----GKNGKLIKA-----LAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSP---- 111 (263)
Q Consensus 51 ~~ILitr~~----~~~~~l~~~-----L~~~G~~v~~~p~~~~~~------~~~~~~l~~~l~~l~~~d~IiFTS~---- 111 (263)
++|++.-.. .....+++. |++.|.++..+.+.+... ....+.+......+.++|.|||.||
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~ 82 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKA 82 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCC
Confidence 355554332 334455444 555587777665543210 0011234444445678999999986
Q ss_pred ---HHHHHHHHHHHHcCCCCcEEEEeC
Q 024727 112 ---EAGSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 112 ---~aV~~~~~~l~~~~~~~~~i~aVG 135 (263)
..++.|++.+....+.+++++.+|
T Consensus 83 ~~p~~lK~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 83 SYTGLLKAFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp BCCHHHHHHHTTSCTTTTTTCEEEEEE
T ss_pred CCCHHHHHHHHhccccccCCCEEEEEE
Confidence 356777765543234466666554
No 200
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=57.92 E-value=33 Score=33.27 Aligned_cols=95 Identities=18% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH--------HHHHHHHHHHHHcCCC-CcEEEEeChh
Q 024727 67 KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (263)
Q Consensus 67 ~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~aV~~~~~~l~~~~~~-~~~i~aVG~~ 137 (263)
..|+..|++|+.+..-. + .+++-+...+ .+.|.|..++- ..++.+.+.+++.+.. .+++++=|..
T Consensus 628 ~~LE~aGFEVIDLGvdV--P---pEeIVeAA~E-edADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~ 701 (763)
T 3kp1_A 628 GGIEKYGVEVHYLGTSV--P---VEKLVDAAIE-LKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQ 701 (763)
T ss_dssp TCGGGGTCEEEECCSSB--C---HHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTT
T ss_pred HHHHhCCCEEEECCCCC--C---HHHHHHHHHH-cCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 46899999999987642 1 2333333322 57899888743 3456677888888775 4788888864
Q ss_pred -HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 138 -TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 138 -Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
|.+..++. |... +.++...+..+++.|.+.
T Consensus 702 ~tqd~AkeI------GADa-~f~DATeAVeVA~~Ll~~ 732 (763)
T 3kp1_A 702 VTPEVAVKQ------GVDA-GFGRGSKGIHVATFLVKK 732 (763)
T ss_dssp CCHHHHHTT------TCSE-EECTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHc------CCcE-EECCcchHHHHHHHHHHH
Confidence 44445555 9876 455556677777776643
No 201
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=57.81 E-value=50 Score=23.73 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=63.4
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~ 123 (263)
.+++||+.-... ....+...|++.|+++... .+.++....+.. ..+|.|++-- .++.+ +++.+.+
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 76 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQC--------GNAIEAVPVAVK-THPHLIITEANMPKISGMD-LFNSLKK 76 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHHT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHH-HHHHHHc
Confidence 467888886654 4577888999888755422 233333334422 3689988752 24444 4444554
Q ss_pred c-CCCCcEEEEeCh-h---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 124 A-GTPNVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 124 ~-~~~~~~i~aVG~-~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
. ...+++++++.. . ....+.+. |.. ++..+..+.+.|...+..
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~L~~~i~~ 124 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQLLDM------GFI-DFIAKPVNAIRLSARIKR 124 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHhC------CCC-EEEeCCCCHHHHHHHHHH
Confidence 2 234667766532 2 23334456 776 467777888888877764
No 202
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=57.27 E-value=47 Score=26.91 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.+.|++||||-...+ ...+++.|.+.|++|...
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467999999987654 467899999999987654
No 203
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=57.17 E-value=20 Score=27.60 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred hHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCHHH-----HHHHHHHhccccCCCCceEEEEC
Q 024727 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-----VRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~s~-----v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
.+.+.|++.|++|..+.+.+. ....++...+.+.|.|+|-||.- .. .|++.+......+.+++++|
T Consensus 24 ~ia~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~d~ii~Gspty~g~~p~~-~~l~~l~~~~~~~k~va~fg 94 (159)
T 3fni_A 24 AIINGITKTGVGVDVVDLGAA----VDLQELRELVGRCTGLVIGMSPAASAASIQ-GALSTILGSVNEKQAVGIFE 94 (159)
T ss_dssp HHHHHHHHTTCEEEEEESSSC----CCHHHHHHHHHTEEEEEEECCBTTSHHHHH-HHHHHHHHHCCTTSEEEEEC
T ss_pred HHHHHHHHCCCeEEEEECcCc----CCHHHHHHHHHhCCEEEEEcCcCCCCccHH-HHHHHHHhhcccCCEEEEEE
Confidence 345566677765543333221 02233444445788888888731 13 44443332224567777776
No 204
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=57.05 E-value=34 Score=24.59 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (263)
Q Consensus 48 l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~~~~~l 121 (263)
+.+++||+.-... ....+...|++.|+++... .+..+....+..-..+|.|+.-- .++.+.+ +.+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~-~~l 73 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIA--------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTA-LAI 73 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHH-HHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEe--------cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHH-HHH
Confidence 3568899987654 3567888899999765432 23333333443325789888752 3454433 444
Q ss_pred HHcCCCCcEEEEeChhHH----HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 122 KEAGTPNVRIGVVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta----~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.+. .+++++++..... ..+.+. |.. ++..+..+.+.|...+..
T Consensus 74 ~~~--~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~ 120 (140)
T 3h5i_A 74 QQI--SELPVVFLTAHTEPAVVEKIRSV------TAY-GYVMKSATEQVLITIVEM 120 (140)
T ss_dssp HHH--CCCCEEEEESSSSCCCCGGGGGS------CEE-EEEETTCCHHHHHHHHHH
T ss_pred HhC--CCCCEEEEECCCCHHHHHHHHhC------CCc-EEEeCCCCHHHHHHHHHH
Confidence 543 3566666543322 233344 654 467777888888877754
No 205
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=56.99 E-value=9.4 Score=31.55 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=45.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~l~ 122 (263)
..+.|+++|||-...+ ...+++.|.+.|++|+..-. ..+++...+ -....++. +++..+++.+++.+.
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-------~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDI-------RGEDVVADL--GDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEES-------SCHHHHHHT--CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC-------chHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999987654 46799999999998876422 112222222 11222221 378888988888776
Q ss_pred HcCCCCcEEEEeC
Q 024727 123 EAGTPNVRIGVVG 135 (263)
Q Consensus 123 ~~~~~~~~i~aVG 135 (263)
+.+.-+.-|.+.|
T Consensus 76 ~~g~id~lv~nAg 88 (257)
T 3tl3_A 76 TMGTLRIVVNCAG 88 (257)
T ss_dssp HHSCEEEEEECGG
T ss_pred HhCCCCEEEECCC
Confidence 6432233344444
No 206
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=56.77 E-value=52 Score=23.64 Aligned_cols=113 Identities=10% Similarity=0.091 Sum_probs=65.0
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeC----HHHHHHH
Q 024727 45 SASNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITS----PEAGSVF 117 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~-~~~~l~~~L~~~G-~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS----~~aV~~~ 117 (263)
.....+.+|||.-... ....+...|++.| +++.... ...+.+.... .. ..+|.|++-- .++.+.+
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-------~~~~~~~~~~-~~~~~~dlvi~D~~l~~~~g~~~~ 86 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTV-------GRAAQIVQRT-DGLDAFDILMIDGAALDTAELAAI 86 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC-------CCHHHHTTCH-HHHTTCSEEEEECTTCCHHHHHHH
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC-------CHHHHHHHHH-hcCCCCCEEEEeCCCCCccHHHHH
Confidence 3455578999987654 3467888898888 6655321 1112222222 22 5789888753 3555443
Q ss_pred HHHHHHcCCCCcEEEEeC-hhHHHH---HHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 118 LEAWKEAGTPNVRIGVVG-AGTASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 118 ~~~l~~~~~~~~~i~aVG-~~Ta~~---L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+.+.... .+++++++. ...... +.+. |.. ++..+..+.+.|...+...
T Consensus 87 -~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~L~~~i~~~ 138 (146)
T 4dad_A 87 -EKLSRLH-PGLTCLLVTTDASSQTLLDAMRA------GVR-DVLRWPLEPRALDDALKRA 138 (146)
T ss_dssp -HHHHHHC-TTCEEEEEESCCCHHHHHHHHTT------TEE-EEEESSCCHHHHHHHHHHH
T ss_pred -HHHHHhC-CCCcEEEEeCCCCHHHHHHHHHh------CCc-eeEcCCCCHHHHHHHHHHH
Confidence 3444443 456666653 333322 3344 654 4777778999998777653
No 207
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=56.72 E-value=51 Score=23.50 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLEAWK 122 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~-~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-----S~~aV~~~~~~l~ 122 (263)
+.+||+.-... ....+...|++ .|+++... .+.++....+.....+|.|+.- ..++.+. ++.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~-~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEV--------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEV-LSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEE--------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHH-HHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEE--------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHH-HHHHH
Confidence 56899887654 34678888888 88766532 2322222233221568988875 2344443 44455
Q ss_pred Hc-CCCCcEEEEe-Chh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 123 EA-GTPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 123 ~~-~~~~~~i~aV-G~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+. ...+++++++ |.. ....+.+. |.. ++..+..+.+.|.+.+...
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKF------KVS-DYILKPYPTKRLENSVRSV 124 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHS------CCS-EEEESSCCTTHHHHHHHHH
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCHHHHHHHHHHH
Confidence 41 1235666655 332 23334455 765 4667777888888777654
No 208
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=56.27 E-value=8.4 Score=30.90 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=33.4
Q ss_pred hCCCeeeEEeeeccccCC----------------CChHHHHHHhCCCCEEEEeCH-------HHHHHHHHHhc
Q 024727 199 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (263)
Q Consensus 199 ~~G~~v~~~~vY~~~~~~----------------~~~~~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~ 248 (263)
+.|.+|..+.+|+....+ ....++.+.+...|.|+|.+| ..++ .|++.+
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK-~~iD~v 99 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILK-GFIDRV 99 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHH-HHHHHH
Confidence 467888888888754311 112334555678999999875 6788 888876
No 209
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=56.12 E-value=29 Score=26.56 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=7.2
Q ss_pred CCCCHHHHHHHhcc
Q 024727 160 SKATGKILASELPK 173 (263)
Q Consensus 160 ~~~t~e~L~~~l~~ 173 (263)
...+.+.+++.|.+
T Consensus 10 ~tGnT~~~A~~ia~ 23 (161)
T 3hly_A 10 DYGYSDRLSQAIGR 23 (161)
T ss_dssp TSTTHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 34555566555543
No 210
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=56.08 E-value=52 Score=23.40 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=64.6
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~~ 124 (263)
.++||+.-... ....+...|++.|+++... .+.++....+.. ..+|.|+.-- .++.+. ++.+.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~-~~~l~~~ 75 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVAR-RPYAAMTVDLNLPDQDGVSL-IRALRRD 75 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHH-HHHHHTS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHH-HHHHHhC
Confidence 57899987654 3567888899989765322 233333344433 5689888742 244443 3445442
Q ss_pred -CCCCcEEEEeChhHHH-HHH-HhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 125 -GTPNVRIGVVGAGTAS-IFE-EVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 125 -~~~~~~i~aVG~~Ta~-~L~-~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
...+++++.+...... ... +. -..|.. ++..+..+.+.|...+...
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~---~~~g~~-~~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREGELEFNS---QPLAVS-TWLEKPIDENLLILSLHRA 124 (140)
T ss_dssp GGGTTCEEEEECTTHHHHHHHHCC---TTTCCC-EEECSSCCHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCChHHHHHHh---hhcCCC-EEEeCCCCHHHHHHHHHHH
Confidence 1246788777654433 222 11 112554 4677778899998777653
No 211
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=56.00 E-value=8.5 Score=32.43 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEee-eCCCchHHHHHHhcCCCccEEEEeC
Q 024727 58 ERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNADTIFDWIIITS 110 (263)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~p~~~~~-~~~~~~~l~~~l~~l~~~d~IiFTS 110 (263)
...+...+.+.|++.|+++..++.-+.. ..++. +..+.+||.|||..
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~------~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHTVQIAFPES------IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS------HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEecccchhhCCcC------hhHHhcCCEEEEeC
Confidence 3346678999999999999988542110 11211 11357899999985
No 212
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=55.88 E-value=40 Score=28.78 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH---HHhhhhcCCCCceeecCCC-CCHH
Q 024727 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF---EEVIQSSKCSLDVAFSPSK-ATGK 165 (263)
Q Consensus 91 ~~l~~~l~~l~~~d~Ii-FTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L---~~~~~~~~~G~~~~~~p~~-~t~e 165 (263)
+.+++.+ ..+..|.|| ..+..........+.+. +++++..+......- ... .....+.+.. ....
T Consensus 79 ~~~~~l~-~~~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 148 (386)
T 3sg0_A 79 QNARKLL-SEEKVDVLIGSSLTPVSLPLIDIAAEA---KTPLMTMAAAAILVAPMDERR------KWVYKVVPNDDIMAE 148 (386)
T ss_dssp HHHHHHH-HTSCCSEEECCSSHHHHHHHHHHHHHT---TCCEEECCCCGGGTCSCCTTG------GGEEECSCCHHHHHH
T ss_pred HHHHHHH-hhcCceEEECCCCchhHHHHHHHHHhc---CCeEEEecCCCccccccCCCC------CcEEecCCCcHHHHH
Q ss_pred HHHHHhccCCCCCcEEEEEcCCCC-----chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCH-HH
Q 024727 166 ILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-SA 239 (263)
Q Consensus 166 ~L~~~l~~~~~~~~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~-s~ 239 (263)
.+++.+.+.. .++|.++..+.. .+.+.+.|++.|+++.....|.....+....-..-.-.++|+|++.+. ..
T Consensus 149 ~~~~~l~~~g--~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~ 226 (386)
T 3sg0_A 149 AIGKYIAKTG--AKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTP 226 (386)
T ss_dssp HHHHHHHHTT--CCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGG
T ss_pred HHHHHHHhcC--CCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcch
Q ss_pred HHHHHHHhccccCCCCceEEEEC
Q 024727 240 VRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 240 v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
+. .+++.+.+.... .+++...
T Consensus 227 a~-~~~~~~~~~g~~-~~~~~~~ 247 (386)
T 3sg0_A 227 AV-LPQKALRERGFK-GAIYQTH 247 (386)
T ss_dssp GH-HHHHHHHHTTCC-SEEECCG
T ss_pred HH-HHHHHHHHcCCC-CcEEecc
No 213
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=55.73 E-value=22 Score=27.09 Aligned_cols=38 Identities=5% Similarity=-0.067 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeec
Q 024727 111 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (263)
Q Consensus 111 ~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~ 158 (263)
...+-.+.+.+.+. +.++++-| .|++.|++. |+.+..+
T Consensus 36 K~~l~~~a~~l~~l---Gf~i~AT~-GTa~~L~~~------Gi~v~~v 73 (143)
T 2yvq_A 36 RPRFLGVAEQLHNE---GFKLFATE-ATSDWLNAN------NVPATPV 73 (143)
T ss_dssp HHHHHHHHHHHHTT---TCEEEEEH-HHHHHHHHT------TCCCEEE
T ss_pred hHHHHHHHHHHHHC---CCEEEECc-hHHHHHHHc------CCeEEEE
Confidence 33455566666554 67899997 789999999 9988655
No 214
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=55.30 E-value=28 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=17.2
Q ss_pred CCCEEEEeCH----------HHHHHHHHHhccccCCCCceEEEEC
Q 024727 228 SIPVVAVASP----------SAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 228 ~~d~vvFtS~----------s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
+.|.|+|-+| ..++ .|++.+....+.+.+++.+|
T Consensus 49 ~~d~ii~g~pty~~~~G~~p~~~~-~fl~~l~~~~l~~k~~~vfg 92 (148)
T 3f6r_A 49 GYDAVLFGCSAWGMEDLEMQDDFL-SLFEEFDRIGLAGRKVAAFA 92 (148)
T ss_dssp TCSEEEEEECEECSSSCEECHHHH-HHHTTGGGTCCTTCEEEEEE
T ss_pred cCCEEEEEecccCCCCCCCcHHHH-HHHHHhhccCCCCCEEEEEE
Confidence 5565555553 2455 56655443224455555553
No 215
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=55.09 E-value=16 Score=34.29 Aligned_cols=140 Identities=10% Similarity=0.047 Sum_probs=81.4
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeC-CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEeC-hh
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~~~~~-~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~-~~~~~~i~aVG-~~ 137 (263)
...++.+.|++.|+++.... +. ...+ .+..+.+.+.-+..++.......+.|++. +.+-+.+--+| ..
T Consensus 220 D~~eikrlL~~~Gi~v~~~~-----~gg~t~~----ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~piG~~~ 290 (533)
T 1mio_A 220 DAWEMDRVLEKIGYHVNATL-----TGDATYE----KVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDG 290 (533)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-----ETTCCHH----HHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHH
T ss_pred hHHHHHHHHHHCCCeEEEEe-----CCCCCHH----HHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEecCCCHHH
Confidence 45799999999999988621 21 1222 24577888888888887777777777653 43322222366 45
Q ss_pred HHHHHHHhhhhcCCCCce--eecCCCCC--HHHHHHHhccC--CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeec
Q 024727 138 TASIFEEVIQSSKCSLDV--AFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~--~~~p~~~t--~e~L~~~l~~~--~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (263)
|.+.|++.. .+.|... +-+++... -..+.+.|.+. ...|+++.+..+....--+...|.+.|+++..+-.+.
T Consensus 291 T~~~Lr~ia--~~~g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t~~ 368 (533)
T 1mio_A 291 IVETLRDMA--KCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEF 368 (533)
T ss_dssp HHHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESS
T ss_pred HHHHHHHHH--HHhCCCcccccchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEecc
Confidence 777777751 1124210 00010000 00111222211 1257899888777666677889999999987765444
No 216
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=55.08 E-value=20 Score=29.03 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~-----------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (263)
.++|+|.....-...+.+.|.+.|. +..+-. +..... .+.+.++.. .+.+.|.+|.+.++.-..
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~n 85 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 85 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHT--TCTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhc--CcchhcEEEEcCCCcHHH
Confidence 4567777654445667777777775 443311 011111 111212211 357899999987764333
Q ss_pred HH--HHHHHcCCCCcEEEEe--ChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH
Q 024727 117 FL--EAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (263)
Q Consensus 117 ~~--~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~ 170 (263)
.. ..+++.+ .+.++++. .+...+.|++. |....+.|....+..|++.
T Consensus 86 ~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~ 136 (234)
T 2aef_A 86 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 136 (234)
T ss_dssp HHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHH
Confidence 22 3334433 24466654 66777889988 9987677755444444443
No 217
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=54.97 E-value=11 Score=31.48 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=41.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~l 121 (263)
...+.|++||||-...+ ...+++.|.+.|++|...-. .. +.+.+.+...+ ..++. +++..+++.+++.+
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-----~~--~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYR-----TE--HASVTELRQAG-AVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES-----SC--CHHHHHHHHHT-CEEEECCTTSHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC-----Ch--HHHHHHHHhcC-CeEEECCCCCHHHHHHHHHHH
Confidence 35688999999987654 46799999999998875421 11 11222232221 22221 36788888888776
Q ss_pred HHc
Q 024727 122 KEA 124 (263)
Q Consensus 122 ~~~ 124 (263)
.+.
T Consensus 94 ~~~ 96 (260)
T 3gem_A 94 KTQ 96 (260)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 218
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=54.70 E-value=78 Score=26.85 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh---CCCCEEEEeCH
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASP 237 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~vvFtS~ 237 (263)
.+|++|++....-....+...++..|+++..+++-.. -..+.+++.+.+ .+..+|+++++
T Consensus 93 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~ 155 (386)
T 2dr1_A 93 SKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG--KAVKPEDLDDALRKNPDVEAVTITYN 155 (386)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHCTTCCEEEEESE
T ss_pred cCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC--CCCCHHHHHHHHhcCCCCcEEEEEee
Confidence 3567888887665433356667778888877765321 112334454444 36778888765
No 219
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=54.40 E-value=21 Score=29.40 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred CCCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 49 SNPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 49 ~g~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
..++|++..+... ..-+.+.|+++|..+....++......+ .+.+.+.+.....+|+|+.++-.....+++
T Consensus 130 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 209 (292)
T 3k4h_A 130 GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLS 209 (292)
T ss_dssp TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHH
T ss_pred CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHH
Confidence 3446766654322 2346677888887665333332211111 133555664446789999999888888888
Q ss_pred HHHHcCC---CCcEEEEeChhH
Q 024727 120 AWKEAGT---PNVRIGVVGAGT 138 (263)
Q Consensus 120 ~l~~~~~---~~~~i~aVG~~T 138 (263)
.+.+.++ +++.+++.+...
T Consensus 210 al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 210 ALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp HHHHTTCCTTTTCEEEEESCCH
T ss_pred HHHHhCCCCCCeEEEEEecCcc
Confidence 8888876 478888887643
No 220
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=54.29 E-value=50 Score=22.71 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=62.2
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHHHHc
Q 024727 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAWKEA 124 (263)
Q Consensus 51 ~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~~~~~l~~~ 124 (263)
++||+.-... ....+...|++.|+++... .+.++....+.. ..+|.++.-- .++.+ +++.+...
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~~-~~~~l~~~ 75 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDET--------TDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGYL-ICGKLKKD 75 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEE--------CCHHHHHHHHHH-HCCSEEEEESBCGGGCBHHH-HHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEe--------cCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHHH-HHHHHhcC
Confidence 5888886653 3467888888888865422 222333333422 4689888742 24443 44555554
Q ss_pred C-CCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 125 G-TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 125 ~-~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
. ..++++++++........+.+ ..|.. ++..+..+.+.|...+..
T Consensus 76 ~~~~~~~ii~~~~~~~~~~~~~~---~~g~~-~~l~kp~~~~~l~~~i~~ 121 (127)
T 2gkg_A 76 DDLKNVPIVIIGNPDGFAQHRKL---KAHAD-EYVAKPVDADQLVERAGA 121 (127)
T ss_dssp TTTTTSCEEEEECGGGHHHHHHS---TTCCS-EEEESSCCHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCchhHHHHH---HhCcc-hheeCCCCHHHHHHHHHH
Confidence 2 346777776444333332221 11654 466777888888877754
No 221
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=54.20 E-value=81 Score=27.40 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=87.8
Q ss_pred CeEEEeCCCCChHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024727 51 PKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L-~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~~~~~l~~~~~~~ 128 (263)
|+|+++..........+.| +..|+++...+-. .. ++ ....+.++|.++..+...+ +.+++.+.+. +
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~--~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 68 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LD--EN---TVEWAKGFDGINSLQTTPYAAGVFEKMHAY---G 68 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CC--TT---GGGGGTTCSEEEECCSSCBCHHHHHHHHHT---T
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----Ch--HH---HHHHhcCCeEEEEcCCCCCCHHHHHhCccc---C
Confidence 4688865433334444445 3457666543321 11 11 1223578999887542222 2344444442 2
Q ss_pred cEEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHH----Hhcc-------------------------C
Q 024727 129 VRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILAS----ELPK-------------------------N 174 (263)
Q Consensus 129 ~~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~----~l~~-------------------------~ 174 (263)
+++++. |-. -.+++++. |+.+.-.|. ++.+.+++ .+.. .
T Consensus 69 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 141 (333)
T 1dxy_A 69 IKFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGK 141 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCC
T ss_pred ceEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCcc
Confidence 444432 222 24567888 998766664 44333321 1110 0
Q ss_pred CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHhCCCCEEEEeCHHH
Q 024727 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 175 ~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~l~~~d~vvFtS~s~ 239 (263)
...|+++.++.-..-...+.+.|+..|++|. +|.+...... ...+.+.+...|+|++.-|.+
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~ 208 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI---AYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGI 208 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCc
Confidence 1256788888766656678889999998764 5554332210 001223335789999887754
No 222
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=54.18 E-value=14 Score=30.47 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=44.3
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHH
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFL 118 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~ 118 (263)
||+..+.|++||||-...+ ...+++.|.+.|++|...- . +.+.+++....++ ...++. +++...++.++
T Consensus 1 smm~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~------r-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 73 (259)
T 4e6p_A 1 SMMKRLEGKSALITGSARGIGRAFAEAYVREGATVAIAD------I-DIERARQAAAEIGPAAYAVQMDVTRQDSIDAAI 73 (259)
T ss_dssp ---CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE------S-CHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHH
T ss_pred CccccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe------C-CHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHH
Confidence 4667789999999987654 4678999999999876431 1 2222333332222 222222 36778888777
Q ss_pred HHHHH
Q 024727 119 EAWKE 123 (263)
Q Consensus 119 ~~l~~ 123 (263)
+.+.+
T Consensus 74 ~~~~~ 78 (259)
T 4e6p_A 74 AATVE 78 (259)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 223
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=54.07 E-value=66 Score=24.01 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=57.8
Q ss_pred eCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEc-CC
Q 024727 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA-SA 187 (263)
Q Consensus 109 TS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~-g~ 187 (263)
.|+..++...+.+...+.+++.+. .|.... .+... .++..+.....+.+.+++.+.+. +|+.+++.. ..
T Consensus 65 ~~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 65 YLDGAIEVTKQNLAKFNIKNCQII-KGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CSHHHHHHHHHHHHHTTCCSEEEE-ESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEE-ECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 366677766666666555454543 444443 44433 45554432225677888888777 667776665 34
Q ss_pred CCchhHHHHHHhCCCeeeEEeeecc
Q 024727 188 KASNEIEEGLSNRGFEVVRLNTYTT 212 (263)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (263)
.....+.+.|++.|.++..+.+...
T Consensus 135 ~~~~~~~~~l~~~g~~~~~~~~~~~ 159 (183)
T 2yxd_A 135 ENAAKIINEFESRGYNVDAVNVFIS 159 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccHHHHHHHHHHcCCeEEEEEeeee
Confidence 4456788899999988877654443
No 224
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=54.06 E-value=54 Score=28.18 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-C-CCCEEEEeCH
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~-~~d~vvFtS~ 237 (263)
.+|++|++....-....+...++..|+++..+++-.. -..+.+++.+.+ . +..+|+++++
T Consensus 107 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~v~~~~~ 168 (393)
T 1vjo_A 107 EPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG--EVFSLEELRTALETHRPAILALVHA 168 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC--CCCCHHHHHHHHhhCCceEEEEecc
Confidence 3556777776554333355666777777766654221 112233444333 2 5667777765
No 225
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=53.83 E-value=17 Score=31.27 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=50.8
Q ss_pred CCeEEEeCCC----CChHH----HHHHHHhCCCcEEEeceEEeeeCCC------chHHHHHHhcCCCccEEEEeCH----
Q 024727 50 NPKVVVTRER----GKNGK----LIKALAKHRIDCLELPLIQHAQGPD------TDRLSSVLNADTIFDWIIITSP---- 111 (263)
Q Consensus 50 g~~ILitr~~----~~~~~----l~~~L~~~G~~v~~~p~~~~~~~~~------~~~l~~~l~~l~~~d~IiFTS~---- 111 (263)
.++|++.-.. ..... +.+.+++.|+++..+.+.+. ++.+ .+.+....+.+...|.|||.||
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dl-pl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~ 136 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDL-PLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHG 136 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTC-CCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcC-CCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcccc
Confidence 4677766433 22333 44556667999888777654 2221 1234555556678999999995
Q ss_pred ---HHHHHHHHHHHHc-----CCCCcEEEEe
Q 024727 112 ---EAGSVFLEAWKEA-----GTPNVRIGVV 134 (263)
Q Consensus 112 ---~aV~~~~~~l~~~-----~~~~~~i~aV 134 (263)
...+.|+..+... .+.+++++++
T Consensus 137 sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv 167 (279)
T 2fzv_A 137 QITSVMKAQIDHLPLEMAGIRPTQGRTLAVM 167 (279)
T ss_dssp EECHHHHHHHHHSCSCBTTBCSSTTCEEEEE
T ss_pred CcCHHHHHHHHHHhhhcccccccCCCEEEEE
Confidence 5778888876432 1345555544
No 226
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=53.53 E-value=7.9 Score=33.34 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=44.8
Q ss_pred CCCCeEEEeCCC--CC------hHHHHHHHHhCCCcEEEeceEEeeeCC--C----------------------------
Q 024727 48 NSNPKVVVTRER--GK------NGKLIKALAKHRIDCLELPLIQHAQGP--D---------------------------- 89 (263)
Q Consensus 48 l~g~~ILitr~~--~~------~~~l~~~L~~~G~~v~~~p~~~~~~~~--~---------------------------- 89 (263)
+..|+|||.-.. .+ .+.+.+.|++.|.+|..+-+|+....+ +
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQ 99 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCS
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCC
Confidence 445678776432 22 345677888999999988887643211 0
Q ss_pred chHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH
Q 024727 90 TDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK 122 (263)
Q Consensus 90 ~~~l~~~l~~l~~~d~IiFTS~-------~aV~~~~~~l~ 122 (263)
.+++....+.+...|.|||.+| ...+.|+..+-
T Consensus 100 ~~dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~ 139 (280)
T 4gi5_A 100 SADIVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVY 139 (280)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhc
Confidence 1123333334567899999875 56666666553
No 227
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=53.52 E-value=78 Score=24.72 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=63.5
Q ss_pred eEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcE
Q 024727 52 KVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (263)
Q Consensus 52 ~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~ 130 (263)
+||+.-... ....+...|++.|+++... .+.++....+ ....+|.|+....++.+.. ..+.+. ..+++
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvilp~~~g~~~~-~~lr~~-~~~~~ 70 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLM-DIRNYDLVMVSDKNALSFV-SRIKEK-HSSIV 70 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHH-TTSCCSEEEECCTTHHHHH-HHHHHH-CTTSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHH-hcCCCCEEEeCCCCHHHHH-HHHHhC-CCCCc
Confidence 577775543 3456778888888876422 2333333444 2357999994445666544 445544 33677
Q ss_pred EEEeChh----HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhccCC
Q 024727 131 IGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (263)
Q Consensus 131 i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~ 175 (263)
++.+... ....+.+. |.. ++..+.. +.+.|...+....
T Consensus 71 ii~lt~~~~~~~~~~~~~~------Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAFEQ------GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEEESSCCHHHHHHHHHH------TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHc------CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 7766322 33344455 765 4677778 8899988887654
No 228
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=53.18 E-value=59 Score=23.24 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=63.6
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~~~~~l~~ 123 (263)
.+++||+.-... ....+...|++.|+..... ...+.++....+ ....+|.|+.--. ++.+ +++.+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~------~~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLE------FVDNGAKALYQV-QQAKYDLIILDIGLPIANGFE-VMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEE------EESSHHHHHHHH-TTCCCSEEEECTTCGGGCHHH-HHHHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEE------EECCHHHHHHHh-hcCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 467899987654 3467888899999873311 112333334444 2357898887532 3444 3444554
Q ss_pred c-CCCCcEEEEeC-hhH---HHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhcc
Q 024727 124 A-GTPNVRIGVVG-AGT---ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (263)
Q Consensus 124 ~-~~~~~~i~aVG-~~T---a~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~ 173 (263)
. ...+++++++. ... ...+.+. |.. ++..+.. +.+.|.+.+..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~~l~~~i~~ 124 (144)
T 3kht_A 76 PGANQHTPIVILTDNVSDDRAKQCMAA------GAS-SVVDKSSNNVTDFYGRIYA 124 (144)
T ss_dssp SSTTTTCCEEEEETTCCHHHHHHHHHT------TCS-EEEECCTTSHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCcHHHHHHHHHH
Confidence 2 12466676654 322 2334445 765 4677777 88888877764
No 229
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=52.97 E-value=56 Score=26.59 Aligned_cols=75 Identities=8% Similarity=-0.054 Sum_probs=48.7
Q ss_pred CCCCCCeEEEeCCC--CC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRER--GK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~--~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~ 120 (263)
.++.+++||||-.. .+ ...+++.|.+.|++|...-. .. ...+.+++.....+...++. +++..+++.+++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYV--GD--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEES--SG--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEec--ch--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 57889999999865 44 56899999999998764321 11 11233333333344444443 4789999999887
Q ss_pred HHHc
Q 024727 121 WKEA 124 (263)
Q Consensus 121 l~~~ 124 (263)
+.+.
T Consensus 86 ~~~~ 89 (271)
T 3ek2_A 86 LKTH 89 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 230
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=52.96 E-value=63 Score=23.46 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~ 120 (263)
.++.+.+||+.-... ....+...|++.|+++... .+..+....+. ...+|.|++-- .++.+ +++.
T Consensus 3 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (154)
T 2rjn_A 3 LNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF--------TSPLDALEALK-GTSVQLVISDMRMPEMGGEV-FLEQ 72 (154)
T ss_dssp -CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SCHHHHHHHHT-TSCCSEEEEESSCSSSCHHH-HHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHh-cCCCCEEEEecCCCCCCHHH-HHHH
Confidence 456788999987654 3466888888888765421 23333344443 34689988752 24444 3444
Q ss_pred HHHcCCCCcEEEEe-ChhHHHHHHHhhhhcCCC-CceeecCCCCCHHHHHHHhccC
Q 024727 121 WKEAGTPNVRIGVV-GAGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 121 l~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G-~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+.+.. +.++++++ +........+.+. .| .. ++.++..+.+.|...+...
T Consensus 73 l~~~~-~~~~ii~ls~~~~~~~~~~~~~---~g~~~-~~l~kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 73 VAKSY-PDIERVVISGYADAQATIDAVN---RGKIS-RFLLKPWEDEDVFKVVEKG 123 (154)
T ss_dssp HHHHC-TTSEEEEEECGGGHHHHHHHHH---TTCCS-EEEESSCCHHHHHHHHHHH
T ss_pred HHHhC-CCCcEEEEecCCCHHHHHHHHh---ccchh-eeeeCCCCHHHHHHHHHHH
Confidence 54433 35666665 4333333222210 14 44 4667778888888777653
No 231
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=52.86 E-value=81 Score=27.55 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=47.6
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEe-CHHH
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIIT-SPEA 113 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFT-S~~a 113 (263)
+.+++|||.-.....-.+.+.+++.|++++.+.... ..+..+.+.+.+.. ...+.|.|+.. +-..
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~-~~~~~d~v~~~~~~~~ 83 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKV-KDLNLDGAATCCLDTG 83 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHT-TTSCCSEEECCSCSTT
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHH-HHcCCCEEEeCCcchh
Confidence 357899999777667789999999999988763211 11122334444444 23467888863 4445
Q ss_pred HHHHHHHHHHcC
Q 024727 114 GSVFLEAWKEAG 125 (263)
Q Consensus 114 V~~~~~~l~~~~ 125 (263)
+..+...++..+
T Consensus 84 ~~~~a~~~~~~g 95 (403)
T 4dim_A 84 IVSLARICDKEN 95 (403)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 555655555554
No 232
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=52.82 E-value=1.1e+02 Score=26.76 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=66.4
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcE
Q 024727 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (263)
Q Consensus 101 ~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~ 180 (263)
..+|.||++|..--+.+.+...+. ++++++.++... ..- .+.. +....+.+.=|+-.+.....+.++
T Consensus 85 ~g~d~Ii~~g~~~~~~~~~vA~~~--Pdv~fv~id~~~----~~~------Nv~s-v~~~~~eg~ylaG~~A~~~tk~~k 151 (356)
T 3s99_A 85 AGNKLIFTTSFGYMDPTVKVAKKF--PDVKFEHATGYK----TAD------NMSA-YNARFYEGRYVQGVIAAKMSKKGI 151 (356)
T ss_dssp TTCSEEEECSGGGHHHHHHHHTTC--TTSEEEEESCCC----CBT------TEEE-EEECHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCCEEEECCHHHHHHHHHHHHHC--CCCEEEEEeccc----cCC------cEEE-EEechhHHHHHHHHHHHHhcCCCE
Confidence 579999998877666665544432 478888775321 112 3332 222322222233222222223589
Q ss_pred EEEEcCCCCch------hHHHHHHhCCCeeeEEeeeccccCCCCh-HHHHHH-h-CCCCEEEEeC
Q 024727 181 VLYPASAKASN------EIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQ-A-LSIPVVAVAS 236 (263)
Q Consensus 181 vL~~~g~~~~~------~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~~-l-~~~d~vvFtS 236 (263)
|.++.|..... -+.+.++..+-++.....|.....+... .++.+. + +.+|+|.-..
T Consensus 152 IGfVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~ 216 (356)
T 3s99_A 152 AGYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHT 216 (356)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred EEEECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECC
Confidence 99999976432 3456777777777777777653322111 122222 2 5788775543
No 233
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=52.76 E-value=34 Score=29.10 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=57.2
Q ss_pred HHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHHcCC-CCcEEEEeChhH
Q 024727 69 LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGT-PNVRIGVVGAGT 138 (263)
Q Consensus 69 L~~~-G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--------aV~~~~~~l~~~~~-~~~~i~aVG~~T 138 (263)
|+.+ |++|+++-.- .| .+++-+...+ .+.|.|...+.. .+..+.+.+++.+. +++++++=|...
T Consensus 152 L~~~~G~eVi~LG~~--vp---~e~iv~aa~e-~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~ 225 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQ--VA---NEDFIKKAVE-LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRI 225 (262)
T ss_dssp GGGCTTEEEEECCSS--BC---HHHHHHHHHH-TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTC
T ss_pred HHhcCCcEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcC
Confidence 7888 9999987651 22 2333333322 578888876633 23445666766665 358888888654
Q ss_pred -HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 139 -ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 139 -a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.+.+++. |... +.++...+..+++.+..
T Consensus 226 ~~~~a~~i------Gad~-~~~da~~~~~~a~~l~~ 254 (262)
T 1xrs_B 226 NNEIAKEL------GYDA-GFGPGRFADDVATFAVK 254 (262)
T ss_dssp CHHHHHTT------TCSE-EECTTCCHHHHHHHHHH
T ss_pred CHHHHHHc------CCeE-EECCchHHHHHHHHHHH
Confidence 4555555 9876 45555677777766654
No 234
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=52.26 E-value=12 Score=31.76 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=43.4
Q ss_pred EEEEEcCCCCc--------hhHHHHHHhCCCeeeEEeeeccccCC---------------------------------CC
Q 024727 180 TVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTEPVH---------------------------------HV 218 (263)
Q Consensus 180 ~vL~~~g~~~~--------~~L~~~L~~~G~~v~~~~vY~~~~~~---------------------------------~~ 218 (263)
+||++.|.... +.+.+.|++.|.+|..+.+|+....+ ..
T Consensus 4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd 83 (273)
T 1d4a_A 4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD 83 (273)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHH
Confidence 56666554321 34455677889999999999864210 00
Q ss_pred hHHHHHHhCCCCEEEEeCH-------HHHHHHHHHhc
Q 024727 219 DQTVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (263)
Q Consensus 219 ~~~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~ 248 (263)
.....+.+...|.|||.+| ..++ .|++.+
T Consensus 84 ~~~~~~~l~~AD~IV~~~P~y~~s~Pa~LK-~~iDrv 119 (273)
T 1d4a_A 84 IVAEQKKLEAADLVIFQFPLQWFGVPAILK-GWFERV 119 (273)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCEEEEECchhhccCCHHHH-HHHHHH
Confidence 1122333568999999885 7888 999875
No 235
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=52.18 E-value=21 Score=24.38 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=26.9
Q ss_pred cCCCCCCCeEEEeC-CCCChHHHHHHHHhCCCcEE
Q 024727 44 ASASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (263)
Q Consensus 44 ~~~~l~g~~ILitr-~~~~~~~l~~~L~~~G~~v~ 77 (263)
.+..+.|.+|.++. .....+++.+.++.+|+.+.
T Consensus 4 ~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp --CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred cccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 44678899999986 34467889999999999976
No 236
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=52.05 E-value=19 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.9
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 024727 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~ 77 (263)
..++.|++|++|..-. .++++.+.++++|+.+.
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 4689999999997643 67899999999999875
No 237
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=51.84 E-value=19 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=18.8
Q ss_pred CCCCEEEEeCHH-------H--HHHHHHHhccccCCCCceEEEEC
Q 024727 227 LSIPVVAVASPS-------A--VRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 227 ~~~d~vvFtS~s-------~--v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
.+.|.|+|-||. . ++ .|++.+.. .+.+.+++.+|
T Consensus 45 ~~~d~vi~g~p~y~~~~~~~~~~~-~fl~~l~~-~l~~k~~~~~~ 87 (137)
T 2fz5_A 45 ASKDVILLGCPAMGSEELEDSVVE-PFFTDLAP-KLKGKKVGLFG 87 (137)
T ss_dssp HTCSEEEEECCCBTTTBCCHHHHH-HHHHHHGG-GCSSCEEEEEE
T ss_pred hcCCEEEEEccccCCCCCCHHHHH-HHHHHhhh-hcCCCEEEEEE
Confidence 366777776665 1 66 66665532 13455555543
No 238
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=51.57 E-value=63 Score=26.03 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.++.+++||||....+ ...+++.|.+.|++|...
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 44 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIIS 44 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5678999999988765 467899999999987743
No 239
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=51.29 E-value=62 Score=27.74 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-C-CCCEEEEeCH
Q 024727 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (263)
Q Consensus 177 ~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~-~~d~vvFtS~ 237 (263)
+|++|++....-......+.++..|+++..+++-.. -..+.+++.+.+ . +..+|+++++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~v~~~~~ 152 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD--RPFSLETLARAIELHQPKCLFLTHG 152 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--SCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC--CCCCHHHHHHHHHhCCCCEEEEECC
Confidence 456777776655443223455667777766654221 112233444433 2 5667777654
No 240
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=51.20 E-value=62 Score=22.84 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=62.5
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC---------HHHHHHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS---------PEAGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS---------~~aV~~~~~ 119 (263)
+.+||+.-... ....+...|++.|+++... .+.++....+.. ..+|.|++-- .++.+ +++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~-~~~ 72 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLF-WLH 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHH-HHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHH-HHH
Confidence 56888886653 3456888888888765422 233333344433 4689888752 23444 344
Q ss_pred HHHHcCCCCcEEEEeCh-hHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 120 AWKEAGTPNVRIGVVGA-GTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~-~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
.+.+.. .+.+++++.. ... ..+.+. |.. ++..+..+.+.|.+.+....
T Consensus 73 ~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 73 EIKRQY-RDLPVVLFTAYADIDLAVRGIKE------GAS-DFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp HHHHHC-TTCCEEEEEEGGGHHHHHHHHHT------TCC-EEEEESCCHHHHHHHHHHHH
T ss_pred HHHhhC-cCCCEEEEECCCCHHHHHHHHHc------Cch-heeeCCCCHHHHHHHHHHHH
Confidence 444432 3566666543 322 333344 665 46666778888888776543
No 241
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=50.97 E-value=67 Score=26.27 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=56.0
Q ss_pred CCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 49 ~g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
..++|++..... ..+-+.+.++++|..+....+...... ...+.+.+.+..-..+|+|+.++-.....+++
T Consensus 124 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 203 (291)
T 3egc_A 124 GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQ 203 (291)
T ss_dssp TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHH
Confidence 345677665443 223466778888876543222221111 11345666665556899999999888888888
Q ss_pred HHHHcCC---CCcEEEEeChhH
Q 024727 120 AWKEAGT---PNVRIGVVGAGT 138 (263)
Q Consensus 120 ~l~~~~~---~~~~i~aVG~~T 138 (263)
.+.+.++ +++.++..+..-
T Consensus 204 al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 204 ALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp HHHHHTCCBTTTBEEEEESCCG
T ss_pred HHHHcCCCCCCceEEEEecCch
Confidence 8888876 378888887543
No 242
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=50.94 E-value=67 Score=23.17 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~ 120 (263)
....+.+||+.-... ....+.+.|++.|+.+... .+.++....+.. ..+|.|+.- ..++.+.. +.
T Consensus 10 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~~~-~~ 79 (143)
T 3m6m_D 10 ARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLDML-KQ 79 (143)
T ss_dssp -----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHH-HH
T ss_pred cccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHH-HH
Confidence 345678999996553 3456788888888765432 233333334422 578988874 23454433 33
Q ss_pred HHH---cCCCCcEEEEe-Chh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 121 WKE---AGTPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 121 l~~---~~~~~~~i~aV-G~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
+.. ......+++++ |.. ....+.+. |.. ++..+..+.+.|.+.+.+..
T Consensus 80 lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~------Ga~-~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 80 LRVMQASGMRYTPVVVLSADVTPEAIRACEQA------GAR-AFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHHTTCCCCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHHC
T ss_pred HHhchhccCCCCeEEEEeCCCCHHHHHHHHHc------Chh-heeeCCCCHHHHHHHHHHHH
Confidence 332 22334556554 432 33444555 775 47778889999998887654
No 243
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.62 E-value=22 Score=26.19 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.6
Q ss_pred CCCCCCeEEEeCCCC--ChHHHHHHHHhCCCcEE
Q 024727 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (263)
Q Consensus 46 ~~l~g~~ILitr~~~--~~~~l~~~L~~~G~~v~ 77 (263)
.++.|++|++|..-. .++++.+.++++|+.|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 579999999998763 57899999999998875
No 244
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=50.58 E-value=49 Score=28.21 Aligned_cols=78 Identities=13% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCCh--HHHHHHhCCCCEEEEeCHHHHHHHHHH-hccccCC
Q 024727 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQALSIPVVAVASPSAVRSSWVN-LISDTEQ 253 (263)
Q Consensus 177 ~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~l~~~d~vvFtS~s~v~~~~~~-~~~~~~~ 253 (263)
+|+||.++..- +.+ +.+.+.++ ++.|.++.+..... ......+...|+|+.|.++-+. .-++ ++.-. .
T Consensus 140 ~g~kV~vIG~f---P~i-~~~~~~~~---~l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN-~Tl~~lL~~~-~ 210 (270)
T 3l5o_A 140 KGKKVGVVGHF---PHL-ESLLEPIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVD-KTLPRLLELS-R 210 (270)
T ss_dssp TTSEEEEESCC---TTH-HHHHTTTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHH-TCHHHHHHHT-T
T ss_pred CCCEEEEECCc---hhH-HHHHhcCC---CEEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhc-CCHHHHHhhC-C
Confidence 57899999765 334 44556665 45666666655432 2233445799999999998777 3333 22211 1
Q ss_pred CCceEEEECC
Q 024727 254 WSNSVACIAG 263 (263)
Q Consensus 254 ~~~~i~~IGp 263 (263)
....++-+||
T Consensus 211 ~a~~vvl~GP 220 (270)
T 3l5o_A 211 NARRITLVGP 220 (270)
T ss_dssp TSSEEEEEST
T ss_pred CCCEEEEECC
Confidence 2456777887
No 245
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=50.36 E-value=41 Score=31.13 Aligned_cols=136 Identities=11% Similarity=0.084 Sum_probs=78.2
Q ss_pred CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEeCh-h
Q 024727 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-G 137 (263)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~-~~~~~~~i~aVG~-~ 137 (263)
....++.+.|++.|+++..+.. .-...++ ++.+.+.+.-+..++.......+.+++ .+.+-...--+|. .
T Consensus 233 gD~~eik~lL~~~Gi~v~~~~~----g~~t~~e----i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~~~ 304 (492)
T 3u7q_A 233 GDAWSSRILLEEMGLRCVAQWS----GDGSISE----IELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTK 304 (492)
T ss_dssp TTTHHHHHHHHHTTCEEEEEEE----TTCCHHH----HHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHH
T ss_pred hhHHHHHHHHHHCCCeEEEEeC----CCCCHHH----HHhhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCHHH
Confidence 3468999999999999886531 1112333 335567778888777666666666654 3433111112554 4
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCCCHHHH--------HHHhccC--CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEE
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKATGKIL--------ASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L--------~~~l~~~--~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~ 207 (263)
|.+.|++.. ...|.. .|+ ..|.+ .+.|... ...|+|+.+..+....--+...|.+.|++|..+
T Consensus 305 T~~~L~~ia--~~~g~~---~~~--~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~ElGm~vv~~ 377 (492)
T 3u7q_A 305 TIESLRAIA--AKFDES---IQK--KCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGT 377 (492)
T ss_dssp HHHHHHHHH--TTSCHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEE
T ss_pred HHHHHHHHH--HHhCCc---chH--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHCCCEEEEE
Confidence 777777761 122321 111 01111 1222211 136789998777665566778999999998765
Q ss_pred eee
Q 024727 208 NTY 210 (263)
Q Consensus 208 ~vY 210 (263)
-.+
T Consensus 378 gt~ 380 (492)
T 3u7q_A 378 GYE 380 (492)
T ss_dssp EES
T ss_pred eCC
Confidence 544
No 246
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=50.15 E-value=49 Score=26.15 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCC-CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCC-
Q 024727 110 SPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA- 187 (263)
Q Consensus 110 S~~aV~~~~~~l~~~~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~- 187 (263)
|+..++...+.+...+.+ ++.+ ..|.... .+... ..++..+.....+.+ +++.+.+...+|+++++....
T Consensus 86 s~~~~~~a~~~~~~~g~~~~v~~-~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 86 RADRIENIQKNIDTYGLSPRMRA-VQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEEE-EESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCEEE-EeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 455555555555555554 3433 3344332 12111 134554444344556 777887777777887776543
Q ss_pred CCchhHHHHHHhCCCeeeEEeeeccccCC
Q 024727 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (263)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (263)
.....+.+.|++.|.++..+.+++..+..
T Consensus 158 ~~~~~~~~~l~~~g~~i~~i~~~~~~~~~ 186 (204)
T 3njr_A 158 ESETLLTQLHARHGGQLLRIDIAQAEPLG 186 (204)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred ccHHHHHHHHHhCCCcEEEEEeecccccC
Confidence 34566778899999999999888766533
No 247
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.12 E-value=1.1e+02 Score=25.86 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=57.2
Q ss_pred CeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 51 PKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 51 ~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
.+|++..... ..+-+.+.|+++|. +.....+.. ..+. +.+...|..-.+.|+|+..+-......++
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~ 222 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYG--EWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQ 222 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEEC--TTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeC--CCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHH
Confidence 4677664432 23456778888886 322222211 1122 23555665556789999999888888888
Q ss_pred HHHHcCCC---CcEEEEeChhHHH--HHHHh
Q 024727 120 AWKEAGTP---NVRIGVVGAGTAS--IFEEV 145 (263)
Q Consensus 120 ~l~~~~~~---~~~i~aVG~~Ta~--~L~~~ 145 (263)
.+.+.+.. ++.++.++..... .+..-
T Consensus 223 al~~~G~~vP~di~vvg~d~~~~~l~~~~~~ 253 (350)
T 3h75_A 223 AARELGRKPGTDLLFSGVNSSPEALQALIDG 253 (350)
T ss_dssp HHHHTTCCBTTTBEEEEESCCHHHHHHHHHT
T ss_pred HHHHcCCCCCCCeEEEecCCCHHHHHHHHcC
Confidence 89888763 7888888754332 44444
No 248
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=50.12 E-value=18 Score=29.84 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=52.8
Q ss_pred CCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024727 50 NPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (263)
Q Consensus 50 g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~ 120 (263)
.++|.+..+.. ..+-+.+.++++|..+....++......+ .+.+.+.+..-..+|+|+.++-.....+++.
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 206 (289)
T 3g85_A 127 YKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISV 206 (289)
T ss_dssp CCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHH
T ss_pred CCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHH
Confidence 44566554332 22346677888887654333332211111 1234555544457899999998888888888
Q ss_pred HHHcCC---CCcEEEEeC
Q 024727 121 WKEAGT---PNVRIGVVG 135 (263)
Q Consensus 121 l~~~~~---~~~~i~aVG 135 (263)
+.+.++ +++.+++.+
T Consensus 207 l~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 207 LNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHTTCCTTTTCEEEEEE
T ss_pred HHHcCCCCCCceEEEEeC
Confidence 888875 477888887
No 249
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=49.94 E-value=63 Score=22.57 Aligned_cols=110 Identities=7% Similarity=0.020 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~~~~~l~~ 123 (263)
.+++||+.-... ....+.+.|++.|+++... .+.++....+.. ..+|.|+.--. ++.+ +++.+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 74 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLST-FEPAIMTLDLSMPKLDGLD-VIRSLRQ 74 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-TCCSEEEEESCBTTBCHHH-HHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 367899987654 3467888898888765432 233333334433 56898887532 3444 4444554
Q ss_pred cCC-CCcEEEEeChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 124 AGT-PNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 124 ~~~-~~~~i~aVG~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
... ...+|+.++... ...+.+. |.. ++..+..+.+.|.+.+....
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTE------GAD-DYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHH------TCC-EEECSSCCHHHHHHHHHHHH
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHh------ChH-HHhhCCCCHHHHHHHHHHHc
Confidence 432 456777665433 2334455 765 47778889999998887653
No 250
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=49.92 E-value=11 Score=29.29 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=35.2
Q ss_pred CeEEEeCCC----CChHHHHHHHHhCCCcEEEeceEEeeeCC-------------CchHHHHHHhcCCCccEEEEeCH--
Q 024727 51 PKVVVTRER----GKNGKLIKALAKHRIDCLELPLIQHAQGP-------------DTDRLSSVLNADTIFDWIIITSP-- 111 (263)
Q Consensus 51 ~~ILitr~~----~~~~~l~~~L~~~G~~v~~~p~~~~~~~~-------------~~~~l~~~l~~l~~~d~IiFTS~-- 111 (263)
++||+.-.. .....+.+.+.+ |+++..+.+.+....+ ..+.+......+.++|.|||.||
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~y 82 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPIY 82 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEECB
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCcc
Confidence 355554322 446777777754 6666655554432100 01123333445568899999885
Q ss_pred -----HHHHHHHHHH
Q 024727 112 -----EAGSVFLEAW 121 (263)
Q Consensus 112 -----~aV~~~~~~l 121 (263)
..++.|++.+
T Consensus 83 ~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 83 WFGMSGTLKLFIDRW 97 (184)
T ss_dssp TTBCCHHHHHHHHTH
T ss_pred ccCCcHHHHHHHHHh
Confidence 4556665544
No 251
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=49.76 E-value=13 Score=34.77 Aligned_cols=141 Identities=11% Similarity=0.000 Sum_probs=79.0
Q ss_pred hHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCC
Q 024727 62 NGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~------------~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~-~~~~ 128 (263)
..++.+.|++.|+++..+|-+ ..-+. + ..+++ +..+.+...-+..++..-....+.+++. +.+-
T Consensus 233 ~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g-g-~~~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~ 309 (519)
T 1qgu_B 233 FRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG-G-TTQQE-MKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPA 309 (519)
T ss_dssp HHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC-C-BCHHH-HHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHcCCeEEEecCccccccCcccCcccccCC-C-CCHHH-HHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCe
Confidence 368999999999999977743 22221 1 11222 3355677777777776545566666654 4443
Q ss_pred cEE-EEeC-hhHHHHHHHhhhhcCCCCceeecCCCC--CHHHHHHHhccC--CCCCcEEEEEcCCCCchhHHHHHHhCCC
Q 024727 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (263)
Q Consensus 129 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~--t~e~L~~~l~~~--~~~~~~vL~~~g~~~~~~L~~~L~~~G~ 202 (263)
+.. +-+| ..|.+.|++.. ...|..+ |+.. --..+.+.+.+. ...|+++++..+..----|...|.+.|+
T Consensus 310 i~~~~PiG~~~T~~~L~~la--~~~g~~~---~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElGm 384 (519)
T 1qgu_B 310 TEVAIPLGLAATDELLMTVS--QLSGKPI---ADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGC 384 (519)
T ss_dssp CCCCCCBSHHHHHHHHHHHH--HHHCCCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EecCCCcchHHHHHHHHHHH--HHHCCCc---HHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCCC
Confidence 333 2377 66777777651 1124331 1100 001223333321 1257899888643333456678899999
Q ss_pred eeeEEeee
Q 024727 203 EVVRLNTY 210 (263)
Q Consensus 203 ~v~~~~vY 210 (263)
++..+.+.
T Consensus 385 ~vv~v~~~ 392 (519)
T 1qgu_B 385 EPTVILSH 392 (519)
T ss_dssp EEEEEEET
T ss_pred EEEEEEeC
Confidence 88665553
No 252
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=49.70 E-value=9.2 Score=32.26 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=82.4
Q ss_pred ChHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhH
Q 024727 61 KNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 61 ~~~~l~-~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~T 138 (263)
.+..+. ..+++.|.+..+.++ ++.+ ++++..++.+ ..+..+-.|-|.=.+.+ +++-- ...
T Consensus 14 ~SP~~hn~~~~~~gl~~~Y~~~-~v~~----~~l~~~~~~~~~~~~G~nVT~P~K~~v~------------~~~d~-~~~ 75 (253)
T 3u62_A 14 ISPRLYNEYFKRAGMNHSYGME-EIPP----ESFDTEIRRILEEYDGFNATIPHKERVM------------RYVEP-SED 75 (253)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEE-ECCG----GGHHHHHHHHHHHCSEEEECTTCTTGGG------------GGSEE-CHH
T ss_pred ccHHHHHHHHHHcCCCCEEEeE-ecCH----HHHHHHHHHHhhCCCceeecCChHHHHH------------HHhCC-CHH
Confidence 344444 456788988776654 2221 2233333211 45777888877543322 11111 122
Q ss_pred HHHHHHhhhhcCCCCceee--cCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCC
Q 024727 139 ASIFEEVIQSSKCSLDVAF--SPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (263)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~--~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (263)
++.+-. ++... ...+-|..+++..|.+...++ +++++.+.+....+...|.+.|+ .++.+|.+....
T Consensus 76 A~~iGA--------vNTi~~~~G~NTD~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~k 144 (253)
T 3u62_A 76 AQRIKA--------VNCVFRGKGYNTDWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIER 144 (253)
T ss_dssp HHHHTC--------CCEEETTEEECCHHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHH
T ss_pred HHHcCc--------ceEeecCEEEcchHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 222221 12111 233456778998887665567 99999877766777888888886 345666654311
Q ss_pred -----C-----ChHHHHHHhCCCCEEEEeCHHHH
Q 024727 217 -----H-----VDQTVLKQALSIPVVAVASPSAV 240 (263)
Q Consensus 217 -----~-----~~~~~~~~l~~~d~vvFtS~s~v 240 (263)
. ..+++.+.+.+.|+|+-+.|.+.
T Consensus 145 a~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm 178 (253)
T 3u62_A 145 AKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGM 178 (253)
T ss_dssp HHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTT
T ss_pred HHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCC
Confidence 0 11222233457899998887654
No 253
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=49.51 E-value=52 Score=27.33 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=24.4
Q ss_pred CCCeEEEeCC----------------CC-ChHHHHHHHHhCCCcEEEe
Q 024727 49 SNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 49 ~g~~ILitr~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (263)
.|++||||.+ .. -...+++.+.++|++|..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv 49 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLI 49 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4788999987 44 3568999999999999865
No 254
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=49.07 E-value=80 Score=26.96 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-C-CCCEEEEeCH
Q 024727 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (263)
Q Consensus 177 ~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~-~~d~vvFtS~ 237 (263)
+|++|++.............++..|+++..+++-.. ...+.+++.+.+ . +..+|+++++
T Consensus 93 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~ 153 (393)
T 2huf_A 93 DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIHKPSVLFLTQG 153 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhccCCcEEEEEcc
Confidence 456777776544332233444556777666654211 112233444333 2 5666777654
No 255
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=48.93 E-value=1e+02 Score=25.71 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=82.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~l~ 122 (263)
..|.||.+|||-...+ ...+++.|.+.|++|...- +.. ++.+.++...+.-.+..++. .|+...++.+++...
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFA--RHA--PDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SSC--CCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE--CCc--ccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 4689999999987654 4678999999999887542 111 12222332222223333332 378899988877655
Q ss_pred H-cCCCCcEEEEeC-------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC-----
Q 024727 123 E-AGTPNVRIGVVG-------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA----- 189 (263)
Q Consensus 123 ~-~~~~~~~i~aVG-------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~----- 189 (263)
+ .+.-++-|-..| +.|.+..++. +.+.+...-......+..|++ .+++|+.+.+..+
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~p~m~~---~~G~IVnisS~~~~~~~~ 148 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVAS-------LERNLIHYYAMAHYCVPHLKA---TRGAIVNISSKTAVTGQG 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHH---HTCEEEEECCTHHHHCCS
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHh---cCCeEEEEeehhhccCCC
Confidence 4 332122222222 1233333333 222221111122333444432 3478888876432
Q ss_pred ---------------chhHHHHHHhCCCeeeEEeee
Q 024727 190 ---------------SNEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 190 ---------------~~~L~~~L~~~G~~v~~~~vY 210 (263)
...|...|...|+.|..+.-=
T Consensus 149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG 184 (258)
T 4gkb_A 149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPA 184 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecC
Confidence 245667788899998877653
No 256
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=48.84 E-value=32 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (263)
..+++|+|......-.++.+.|++.|+++..++. .+ .+..+|.||++-..
T Consensus 21 ~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~--------~~-------~l~~~Dglil~GG~ 70 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKK--------SE-------QLEGLDGLVLPGGE 70 (219)
T ss_dssp CCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECS--------GG-------GGTTCSEEEECCCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC--------HH-------HHhhCCEEEECCCC
Confidence 3467899986543334567899999998877653 11 24579999999763
No 257
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=48.79 E-value=23 Score=26.96 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=50.4
Q ss_pred CcEEEEeChhHHHHHHH-hhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeE
Q 024727 128 NVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (263)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~ 206 (263)
+.++++-| .|++.|++ . |+.+..+-+.. .++++.+.+.+++..+. -
T Consensus 31 Gf~l~AT~-gTa~~L~e~~------Gl~v~~v~k~~------------------------~eG~p~I~d~I~~geId--l 77 (134)
T 2xw6_A 31 RFPLVATG-TTGRRIEEAT------GLTVEKLLSGP------------------------LGGDQQMGARVAEGRIL--A 77 (134)
T ss_dssp TSCEEECH-HHHHHHHHHH------CCCCEECSCGG------------------------GTHHHHHHHHHHTTCEE--E
T ss_pred CCEEEEcc-HHHHHHHHhh------CceEEEEEecC------------------------CCCcchHHHHHHCCCcc--E
Confidence 45788886 69999999 8 99875542211 02344555555444332 2
Q ss_pred Eeeecc----ccCCCChHHHHHHhCCCCEEEEeCHHHHHHHHHHhcc
Q 024727 207 LNTYTT----EPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLIS 249 (263)
Q Consensus 207 ~~vY~~----~~~~~~~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~~ 249 (263)
+.--.. .+...+...+.+..-..++-++|+..+++ ++++.+.
T Consensus 78 VInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~-a~v~al~ 123 (134)
T 2xw6_A 78 VIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAE-ALIPWLQ 123 (134)
T ss_dssp EEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHH-HHHHHHH
T ss_pred EEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHH-HHHHHHH
Confidence 222111 11122223344433356778999999999 8888764
No 258
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=48.69 E-value=21 Score=29.92 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=41.2
Q ss_pred CCCeEEEeCCC----CChHH----HHHHHHhCCCcEEEeceEEeeeCCC-----chHHHHHHhcCCCccEEEEeCH----
Q 024727 49 SNPKVVVTRER----GKNGK----LIKALAKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSP---- 111 (263)
Q Consensus 49 ~g~~ILitr~~----~~~~~----l~~~L~~~G~~v~~~p~~~~~~~~~-----~~~l~~~l~~l~~~d~IiFTS~---- 111 (263)
..++|++.-.. ..... +.+.+++.|+++..+.+.+. +..+ .+.+....+.+...|.|||.||
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~-pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~ 111 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL-PLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHG 111 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC-CCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSS
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC-CCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCC
Confidence 35677765433 22333 44455667998888776553 2211 1234444555567888888885
Q ss_pred ---HHHHHHHHHH
Q 024727 112 ---EAGSVFLEAW 121 (263)
Q Consensus 112 ---~aV~~~~~~l 121 (263)
...+.|+..+
T Consensus 112 sipa~LKn~iD~l 124 (247)
T 2q62_A 112 AMTGIMKAQIDWI 124 (247)
T ss_dssp SCCHHHHHHHHTS
T ss_pred CccHHHHHHHHHh
Confidence 4556666554
No 259
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=48.53 E-value=69 Score=23.98 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=48.3
Q ss_pred ChHHHHHHHHhCCCcEEEeceEE-------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQ-------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~-------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~a 133 (263)
+...+.+...+.+-.+....... ..++.+.++-.+.++.++..|.++..|+.. |.+.+.+. +.++++
T Consensus 17 GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~---f~~~~~~l---~~~~iv 90 (143)
T 3glv_A 17 GHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD---MMKTVIEV---KPDIIT 90 (143)
T ss_dssp HHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC---HHHHHHHH---CCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh---HHHHHHhc---CCCEEE
Confidence 45666676666665433322221 112223333344555666689999988765 44555554 567888
Q ss_pred eChhH-------HHHHHHhhhhcCCCCceeecC
Q 024727 134 VGAGT-------ASIFEEVIQSSKCSLDVAFSP 159 (263)
Q Consensus 134 VG~~T-------a~~L~~~~~~~~~G~~~~~~p 159 (263)
+|.-. .+..+++ |+.+.+++
T Consensus 91 ~G~d~~f~~~~l~~~~~~~------g~~v~vv~ 117 (143)
T 3glv_A 91 LGYDQKFDEAELQSKINKL------GITVKIVR 117 (143)
T ss_dssp ECTTCHHHHHHHHHHHHHH------TCCCEEEE
T ss_pred ECCCCCCCHHHHHHHHHHc------CCeEEEEE
Confidence 88642 2333445 77765554
No 260
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=48.25 E-value=71 Score=22.72 Aligned_cols=108 Identities=8% Similarity=0.035 Sum_probs=63.5
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~~ 124 (263)
..+||+.-... ....+...|++.|+++... .+.++....+.. ..+|.|+.-- .++.+.+ +.+++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~-~~lr~~ 73 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------ASGEEALQQIYK-NLPDALICDVLLPGIDGYTLC-KRVRQH 73 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHH-HHHHHS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHH-HHHHcC
Confidence 56899886653 3467888888889766422 233333333433 5689888752 2455433 444443
Q ss_pred C-CCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 125 G-TPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 125 ~-~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
. ..+++++.+ |... .....+. |.. ++..+..+.+.|...+.+.
T Consensus 74 ~~~~~~pii~~t~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 74 PLTKTLPILMLTAQGDISAKIAGFEA------GAN-DYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp GGGTTCCEEEEECTTCHHHHHHHHHH------TCS-EEEETTCCHHHHHHHHHHH
T ss_pred CCcCCccEEEEecCCCHHHHHHHHhc------Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 2 235566554 4332 2334455 765 4777888999998877654
No 261
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=48.14 E-value=86 Score=27.24 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~~~~~l~~~~~~~ 128 (263)
.++||++.+- .++..+.|++.| ++...+. ..+ .+.+++.+ .+.++|.++..+..-+ +.+++.+ ++
T Consensus 2 ~~kvlv~~~~--~~~~~~~l~~~~-~v~~~~~--~~~-~~~~~~~~---~~~~~d~~i~~~~~~i~~~~l~~~-----~~ 67 (330)
T 4e5n_A 2 LPKLVITHRV--HEEILQLLAPHC-ELITNQT--DST-LTREEILR---RCRDAQAMMAFMPDRVDADFLQAC-----PE 67 (330)
T ss_dssp CCEEEECSCC--CHHHHHHHTTTC-EEECCCS--SSC-CCHHHHHH---HHTTCSEEEECTTCCBCHHHHHHC-----TT
T ss_pred CCEEEEecCC--CHHHHHHHHhCC-eEEEecC--CCC-CCHHHHHH---HhCCCeEEEEeCCCCCCHHHHhhC-----CC
Confidence 3589999765 356677887776 4442211 011 12233333 3478999987544322 2233322 34
Q ss_pred cEEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh----c---c-------------C---------
Q 024727 129 VRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P---K-------------N--------- 174 (263)
Q Consensus 129 ~~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l----~---~-------------~--------- 174 (263)
+++++. |-. ..+++++. |+.+...|. ++++.+++.. . + +
T Consensus 68 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 140 (330)
T 4e5n_A 68 LRVIGCALKGFDNFDVDACTAR------GVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG 140 (330)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC
T ss_pred CcEEEECCCcccccCHHHHHhc------CcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC
Confidence 555543 322 24677888 998866654 4554444321 1 0 0
Q ss_pred -CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCCh--------HHHHHHhCCCCEEEEeCHH
Q 024727 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--------QTVLKQALSIPVVAVASPS 238 (263)
Q Consensus 175 -~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--------~~~~~~l~~~d~vvFtS~s 238 (263)
...|+++.++.-..-...+...|+..|.+| .+|++....... ..+.+.+...|+|++.-|.
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~ 210 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATL---QYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPL 210 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEE---EEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCC
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCC
Confidence 124678888876665667888898888854 456654311100 0122223578888888774
No 262
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=48.12 E-value=97 Score=27.81 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=60.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHH
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGS 115 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~------------~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~ 115 (263)
+++|+|.....-...+.+.|.+.|..++.+-.= .+... |... ...|. .+.+.|.||.+.++...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~G-Dat~-~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYG-DATR-MDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEES-CTTC-HHHHHHTTTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEc-CCCC-HHHHHhcCCCccCEEEECCCChHH
Confidence 456888876555678888888888877654321 00111 1100 11222 35789999998876544
Q ss_pred HH--HHHHHHcCCCCcEEEE--eChhHHHHHHHhhhhcCCCCceeecCC
Q 024727 116 VF--LEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPS 160 (263)
Q Consensus 116 ~~--~~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~ 160 (263)
.. ...+++.+ ++.+|++ -.+.-...|++. |.+..+.|.
T Consensus 82 n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~~ 123 (413)
T 3l9w_A 82 NLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERET 123 (413)
T ss_dssp HHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEETT
T ss_pred HHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECcc
Confidence 43 33334443 3456665 477888889998 988755444
No 263
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=47.49 E-value=32 Score=30.20 Aligned_cols=79 Identities=18% Similarity=0.079 Sum_probs=44.8
Q ss_pred CCeEEEe-CCCCC-hHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHH
Q 024727 50 NPKVVVT-RERGK-NGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (263)
Q Consensus 50 g~~ILit-r~~~~-~~~----l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~ 116 (263)
+++|++. .+..+ .+. +.+.+.+.|+++..+.+ .. .+. ......+.++|.|||.|+. .+..
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~---~~-~~~---~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~ 324 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC---KA-CHH---SQIMSEISDAGAVIVGSPTHNNGILPYVAG 324 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET---TT-SCH---HHHHHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC---CC-CCH---HHHHHHHHHCCEEEEECCccCCCchHHHHH
Confidence 4565555 44333 333 44455566765543322 11 112 2223345689999999863 5778
Q ss_pred HHHHHHHcCCCCcEEEEeC
Q 024727 117 FLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 117 ~~~~l~~~~~~~~~i~aVG 135 (263)
|++.+....+.+.+++++|
T Consensus 325 ~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 325 TLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHHTCCCSCEEEEEE
T ss_pred HHHHhhhcccCCCEEEEEE
Confidence 8887766555667777665
No 264
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.26 E-value=26 Score=28.41 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=46.9
Q ss_pred CCCCCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFL 118 (263)
Q Consensus 46 ~~l~g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~ 118 (263)
.++.|++|++.-... ......+.|++.|+++..+.+.+ .+.++..+.+ .+.|.|+++-.++. .+.
T Consensus 23 ~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~l---~~ad~I~l~GG~~~-~l~ 94 (206)
T 3l4e_A 23 SNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTKL---RKNDFIYVTGGNTF-FLL 94 (206)
T ss_dssp CCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHHH---HHSSEEEECCSCHH-HHH
T ss_pred HHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHHH---HhCCEEEECCCCHH-HHH
Confidence 456688888764221 23568889999999877665432 2333333344 56899999987777 456
Q ss_pred HHHHHcCC
Q 024727 119 EAWKEAGT 126 (263)
Q Consensus 119 ~~l~~~~~ 126 (263)
+.+++.++
T Consensus 95 ~~L~~~gl 102 (206)
T 3l4e_A 95 QELKRTGA 102 (206)
T ss_dssp HHHHHHTH
T ss_pred HHHHHCCh
Confidence 66776653
No 265
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=47.13 E-value=52 Score=26.80 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=46.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~~~~~l 121 (263)
..+.++++|||-...+ ...+++.|.+.|++|+..- +... ...+.+.+.+... ....++. +++...++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 79 (264)
T 3i4f_A 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTY--HSDT-TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEA 79 (264)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSCH-HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEc--CCCh-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 3456899999988764 4679999999999876431 1100 0011222222111 1122222 37888888888776
Q ss_pred HHc-CCCCcEEEEeC
Q 024727 122 KEA-GTPNVRIGVVG 135 (263)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (263)
.+. +.-+.-|.+.|
T Consensus 80 ~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 80 MSHFGKIDFLINNAG 94 (264)
T ss_dssp HHHHSCCCEEECCCC
T ss_pred HHHhCCCCEEEECCc
Confidence 543 22234444445
No 266
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=47.11 E-value=55 Score=28.17 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHHHHHH-cCCCCcEEEEeCh
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 136 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~~~~~l~~-~~~~~~~i~aVG~ 136 (263)
-.+.+++.|++...+.+-+. ...+++...+ ++....|.|+..-|-- + +..++.+.. ...|+. ++
T Consensus 55 k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~-----~~ 126 (285)
T 3l07_A 55 KEKACAQVGIDSQVITLPEH---TTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGF-----HP 126 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCC-----SH
T ss_pred HHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccC-----Ch
Confidence 34566778998876654221 1234444444 4556899999998721 1 222222211 122333 33
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCC-CchhHHHHHHhCCCeeeEEeeeccc
Q 024727 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~-~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.-...|.. |-...+.| -|..+.++.|.... ..|++++++...+ ....+...|...|++|.-+ .++
T Consensus 127 ~N~G~l~~-------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~--hs~- 194 (285)
T 3l07_A 127 TNVGRLQL-------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTC--HRF- 194 (285)
T ss_dssp HHHHHHHH-------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEE--CTT-
T ss_pred hheeehhc-------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEE--eCC-
Confidence 33333321 32112333 47788887777653 4789999998443 4566888899999987433 332
Q ss_pred cCCCChHHHHHHhCCCCEEEEeCH
Q 024727 214 PVHHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 214 ~~~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
.. .+.+.+...|+|+-+.+
T Consensus 195 --t~---~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 195 --TT---DLKSHTTKADILIVAVG 213 (285)
T ss_dssp --CS---SHHHHHTTCSEEEECCC
T ss_pred --ch---hHHHhcccCCEEEECCC
Confidence 11 23444579999988776
No 267
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=46.73 E-value=12 Score=30.85 Aligned_cols=43 Identities=21% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (263)
.+.+.+++.|.++..+.+.+ ..| ++...+.+..+|.|||.+|.
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~---~~D---v~~~~~~l~~aD~iv~~~P~ 93 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQ---GYD---IESEIENYLWADTIIYQMPA 93 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGG---CCC---HHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHhhCCCEEEEEECCC---ccC---HHHHHHHHHhCCEEEEECCh
Confidence 34455667799988766543 123 33334455789999998874
No 268
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=46.60 E-value=79 Score=27.50 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=50.2
Q ss_pred CHHHHHHHhccCCC--CCcEEEEEcCC-CC-c----hhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEE
Q 024727 163 TGKILASELPKNGK--KKCTVLYPASA-KA-S----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (263)
Q Consensus 163 t~e~L~~~l~~~~~--~~~~vL~~~g~-~~-~----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvF 234 (263)
+...+++...++.. ...+++++-+. .+ . +.+.+.|.+.|+++..+.+.+ .....+...+.+.|.++|
T Consensus 234 ~~~~~l~~~~~~~~~~~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~-----~~~~~~~~~~~~~d~ii~ 308 (398)
T 1ycg_A 234 DPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSV-----SDRNDVIKEILDARAVLV 308 (398)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGG-----SCHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHhccCCcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCC-----CCHHHHHHHHHHCCEEEE
Confidence 45566655443221 12444444333 22 2 345556677787654444322 223344444568999999
Q ss_pred eCHH-------HHHHHHHHhccccCCCCceEEEEC
Q 024727 235 ASPS-------AVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 235 tS~s-------~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
.||. .++ .|++.+....+.+.+++++|
T Consensus 309 g~p~y~~~~~~~~~-~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 309 GSPTINNDILPVVS-PLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp ECCCBTTBCCGGGH-HHHHHHHHHCCSSCEEEEEE
T ss_pred ECCccCccchHHHH-HHHHHHhccccCCCEEEEEE
Confidence 9863 477 77776543224566666664
No 269
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=46.24 E-value=50 Score=26.82 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHH
Q 024727 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKE 123 (263)
Q Consensus 50 g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~l~~ 123 (263)
|++||||-...+ ...+++.|.+.|++|...- . +.+.+++....+.+..++. +++..+++.+++.+.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~------r-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 71 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFID------I-DEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE------S-CHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe------C-CHHHHHHHHHhcccCCeEEeeCCCHHHHHHHHHHHHH
Confidence 688999987754 4679999999999876531 1 2233344443334433332 4788888888876654
No 270
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=46.16 E-value=27 Score=27.66 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=40.6
Q ss_pred EEEEEcCCCCc--------hhHHHHHHhCCCeeeEEeeeccccCC------CC---hHHHHHHhCCCCEEEEeCH-----
Q 024727 180 TVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTEPVH------HV---DQTVLKQALSIPVVAVASP----- 237 (263)
Q Consensus 180 ~vL~~~g~~~~--------~~L~~~L~~~G~~v~~~~vY~~~~~~------~~---~~~~~~~l~~~d~vvFtS~----- 237 (263)
|||++.|.... +.+.+.++ .|.+|..+.+|+. +.- .. ..++.+.+...|.|+|.||
T Consensus 4 kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~ 81 (192)
T 3fvw_A 4 RILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYA 81 (192)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTB
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccC
Confidence 56666665421 22344444 5777877777752 210 01 1234555679999999987
Q ss_pred --HHHHHHHHHhcc
Q 024727 238 --SAVRSSWVNLIS 249 (263)
Q Consensus 238 --s~v~~~~~~~~~ 249 (263)
..++ +|++.+.
T Consensus 82 ~p~~lK-~~iD~~~ 94 (192)
T 3fvw_A 82 IPGPVK-NLLDWLS 94 (192)
T ss_dssp CCHHHH-HHHHHHT
T ss_pred CCHHHH-HHHHHhh
Confidence 5788 8888765
No 271
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=46.05 E-value=28 Score=28.77 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=45.8
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHH
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFL 118 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~ 118 (263)
+|...+.|+++|||-...+ ...+++.|.+.|++|+..-. .. +..+++...+...+ ...++. +++..+++.++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (264)
T 3ucx_A 4 SMGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAAR--TV--ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLV 79 (264)
T ss_dssp ---CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CcCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC--CH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 4567789999999988765 46799999999998764311 10 01122223332221 222221 37888888888
Q ss_pred HHHHHc
Q 024727 119 EAWKEA 124 (263)
Q Consensus 119 ~~l~~~ 124 (263)
+.+.+.
T Consensus 80 ~~~~~~ 85 (264)
T 3ucx_A 80 DETMKA 85 (264)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 272
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=46.01 E-value=34 Score=27.44 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHhCCCCEEEEeCH-------HHHHHHHHHhccc---cCCCCceEEEEC
Q 024727 222 VLKQALSIPVVAVASP-------SAVRSSWVNLISD---TEQWSNSVACIA 262 (263)
Q Consensus 222 ~~~~l~~~d~vvFtS~-------s~v~~~~~~~~~~---~~~~~~~i~~IG 262 (263)
+.+.+...|.|+|.|| ..++ +|++.+.. ..+.+.+++.++
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK-~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLK-NAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHH-HHHHHHTTSSSCTTTTCEEEEEE
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHH-HHHHHhcccCCcccCCCEEEEEE
Confidence 4444579999999886 4678 88887754 124566666553
No 273
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=45.82 E-value=16 Score=30.09 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=36.9
Q ss_pred CeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 024727 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (263)
Q Consensus 51 ~~ILitr~~--~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (263)
++|++.+.. +....+...|++.|+++..+.++...+.++ .+.++|.||++-+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~---------~~~~~d~lii~GG 54 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK---------DIDDFDMLILMGG 54 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS---------CGGGCSEEEECCC
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC---------CccccCEEEECCC
Confidence 466666543 355788999999999999888776554332 2457999999853
No 274
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=45.79 E-value=43 Score=28.53 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=51.6
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEE-eCHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (263)
Q Consensus 49 ~g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~-~l~~~l~~l~~~d~IiF-TS~~aV~~~~~~l 121 (263)
..++|.+..+.. ..+.+.+.|+++|.++.....+... ..+.. .+.... . ...|.|++ .+......+++.+
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~-~-~~~dai~~~~~~~~a~~~~~~~ 226 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIA-S-LKPDCVYAFFSGGGALKFIKDY 226 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHH-H-HCCSEEEEECCTHHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHH-h-cCCCEEEEecCcchHHHHHHHH
Confidence 456777765433 2355778889999987644333221 12322 233322 2 36788888 7777777888888
Q ss_pred HHcCCCCcEEEEeCh
Q 024727 122 KEAGTPNVRIGVVGA 136 (263)
Q Consensus 122 ~~~~~~~~~i~aVG~ 136 (263)
.+.++. ++++..|-
T Consensus 227 ~~~g~~-vp~~~~~~ 240 (375)
T 4evq_A 227 AAANLG-IPLWGPGF 240 (375)
T ss_dssp HHTTCC-CCEEEEGG
T ss_pred HHcCCC-ceEEecCc
Confidence 888764 67776653
No 275
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=45.74 E-value=19 Score=29.71 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeC--CC--chHHHHHHhcCCC--ccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEe
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQG--PD--TDRLSSVLNADTI--FDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVV 134 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~--~~--~~~l~~~l~~l~~--~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aV 134 (263)
-+.+.|+++|..+...-+...... .. .+.+.+.+....+ +|+|++++-...-.+++.+.+.++ +++.+++.
T Consensus 157 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~ 236 (298)
T 3tb6_A 157 GFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGY 236 (298)
T ss_dssp HHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred HHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEec
Confidence 466778888876543333322111 11 2345556655555 889998888877788888888775 36777777
Q ss_pred Chh
Q 024727 135 GAG 137 (263)
Q Consensus 135 G~~ 137 (263)
+..
T Consensus 237 d~~ 239 (298)
T 3tb6_A 237 DDS 239 (298)
T ss_dssp BCC
T ss_pred CCc
Confidence 654
No 276
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=45.41 E-value=13 Score=29.88 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=14.7
Q ss_pred HHHHHHHhC--CCcEEEeceEEe
Q 024727 64 KLIKALAKH--RIDCLELPLIQH 84 (263)
Q Consensus 64 ~l~~~L~~~--G~~v~~~p~~~~ 84 (263)
.+.+.+++. |.++..+-+++.
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSS
T ss_pred HHHHHHHHhCCCCeEEEEECCCC
Confidence 355566665 899998887664
No 277
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.90 E-value=27 Score=28.72 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=51.1
Q ss_pred eEEEeCCCC-------ChHHHHHHHHhC-CCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 52 KVVVTRERG-------KNGKLIKALAKH-RIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 52 ~ILitr~~~-------~~~~l~~~L~~~-G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
+|++..+.. ...-+.+.++++ |.++... +. ...+. +.+...+..-.++|+|+.++-...-.+++
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 212 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDS--VS--GNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLE 212 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEE--EE--CTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeee--cc--CCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHH
Confidence 777665322 223456667777 7655432 11 11121 23555565556789999999988888888
Q ss_pred HHHHcCCCCcEEEEeCh
Q 024727 120 AWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (263)
.+.+.++.++.++..+.
T Consensus 213 al~~~g~~di~vig~d~ 229 (293)
T 3l6u_A 213 ALKKAKISGKIVVGIDG 229 (293)
T ss_dssp HHHHTTCCCCEEEEEEC
T ss_pred HHHhCCCCCeEEEEecC
Confidence 89888876677777754
No 278
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=44.86 E-value=26 Score=26.13 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--------HHHHHHHHHHc--CCCCcEEEE
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIGV 133 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--------V~~~~~~l~~~--~~~~~~i~a 133 (263)
.+++.|.+.|+++..+.. .+ ...+.++|.|+|-+|.- +..|++.+... .+.+.++++
T Consensus 21 ~ia~~l~~~g~~v~~~~~------~~-------~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~av 87 (147)
T 2hna_A 21 HLAEKLEEAGFTTETLHG------PL-------LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGA 87 (147)
T ss_dssp HHHHHHHHTTCCEEEECC------TT-------SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEEE
T ss_pred HHHHHHHHCCCceEEecC------CC-------HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEEE
Confidence 344555566887765432 11 12457799888877754 56788777654 345667777
Q ss_pred eC
Q 024727 134 VG 135 (263)
Q Consensus 134 VG 135 (263)
.|
T Consensus 88 fg 89 (147)
T 2hna_A 88 IG 89 (147)
T ss_dssp ES
T ss_pred Ee
Confidence 66
No 279
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=44.75 E-value=8.7 Score=30.70 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=14.4
Q ss_pred HHHHHHHHhCC--CcEEEeceE
Q 024727 63 GKLIKALAKHR--IDCLELPLI 82 (263)
Q Consensus 63 ~~l~~~L~~~G--~~v~~~p~~ 82 (263)
+.+.+.+++.| .++..+.++
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETT
T ss_pred HHHHHHHHHhCCCCeEEEeeCC
Confidence 34566677776 888888777
No 280
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=44.73 E-value=1.5e+02 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHh--CCCcEEEe
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAK--HRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~--~G~~v~~~ 79 (263)
...+.+++||||..... ...+.+.|.+ .|++|..+
T Consensus 5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~ 42 (362)
T 3sxp_A 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVL 42 (362)
T ss_dssp SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEE
Confidence 35678999999987653 4578888888 89998875
No 281
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=44.73 E-value=40 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=11.5
Q ss_pred CCCEEEEeCH-------HHHHHHHHHhcc
Q 024727 228 SIPVVAVASP-------SAVRSSWVNLIS 249 (263)
Q Consensus 228 ~~d~vvFtS~-------s~v~~~~~~~~~ 249 (263)
+.|.|+|-|| ..++ .|++.+.
T Consensus 52 ~aD~ii~gsP~y~g~~~~~lk-~fld~~~ 79 (188)
T 2ark_A 52 WADGLAVGSPTNMGLVSWKMK-RFFDDVL 79 (188)
T ss_dssp HCSEEEEEEECBTTBCCHHHH-HHHHHTG
T ss_pred hCCEEEEEeCccCCcCCHHHH-HHHHHHh
Confidence 4566666654 2455 5555543
No 282
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=44.69 E-value=27 Score=29.17 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=46.1
Q ss_pred hCCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-
Q 024727 24 LNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT- 101 (263)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~- 101 (263)
+..+.+-+..||+... ....+.|+++|||-...+ ...+++.|.+.|++|+..- + .+..+++...+...+
T Consensus 9 ~~~~~~~~~~~~~~m~----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r---~~~~~~~~~~~~~~~~ 79 (273)
T 3uf0_A 9 SGVDLGTENLYFQSMT----GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG--R---TDGVKEVADEIADGGG 79 (273)
T ss_dssp --------------------CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S---STHHHHHHHHHHTTTC
T ss_pred ccccccccccchhhcc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc--C---HHHHHHHHHHHHhcCC
Confidence 3445555666777632 234688999999988754 4679999999999876432 1 111222333332221
Q ss_pred CccEEE--EeCHHHHHHHHHHHHHcC
Q 024727 102 IFDWII--ITSPEAGSVFLEAWKEAG 125 (263)
Q Consensus 102 ~~d~Ii--FTS~~aV~~~~~~l~~~~ 125 (263)
...++. +++...++.+.+.+.+.+
T Consensus 80 ~~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 80 SAEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 122221 367888888877666554
No 283
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=44.65 E-value=98 Score=26.52 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=52.1
Q ss_pred CCCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (263)
Q Consensus 48 l~g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~~~~~l 121 (263)
+..++|.+..... ..+.+.+.|++.|.++.....+... ..+....-..+.. .+.|+|++ .+......+++.+
T Consensus 141 ~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 141 KKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQ-AGVEYVVHQNVAGPVANILKDA 218 (392)
T ss_dssp CTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHH
Confidence 3567887765432 3456888899999987654333221 1232222222322 57899985 7777788888888
Q ss_pred HHcCCCCcEEEEeC
Q 024727 122 KEAGTPNVRIGVVG 135 (263)
Q Consensus 122 ~~~~~~~~~i~aVG 135 (263)
.+.++ +.+++..+
T Consensus 219 ~~~g~-~~~~~~~~ 231 (392)
T 3lkb_A 219 KRLGL-KMRHLGAH 231 (392)
T ss_dssp HHTTC-CCEEEECG
T ss_pred HHcCC-CceEEEec
Confidence 88876 45666543
No 284
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=44.64 E-value=26 Score=29.61 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=47.3
Q ss_pred ccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEe-----eeCCCchHHHHH---HhcCCCccEEE----
Q 024727 41 ATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQH-----AQGPDTDRLSSV---LNADTIFDWII---- 107 (263)
Q Consensus 41 ~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~-----~~~~~~~~l~~~---l~~l~~~d~Ii---- 107 (263)
..+|...+.|+++|||-...+ ...+++.|.+.|++|+.+-.-+. ....+.+.+++. +...+ .+..+
T Consensus 19 p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D 97 (299)
T 3t7c_A 19 PGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVD 97 (299)
T ss_dssp ---CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred CcccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECC
Confidence 345667899999999988754 46799999999999875422100 000112223222 22222 22222
Q ss_pred EeCHHHHHHHHHHHHH
Q 024727 108 ITSPEAGSVFLEAWKE 123 (263)
Q Consensus 108 FTS~~aV~~~~~~l~~ 123 (263)
+++..+++.+++.+.+
T Consensus 98 v~~~~~v~~~~~~~~~ 113 (299)
T 3t7c_A 98 VRDFDAMQAAVDDGVT 113 (299)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3788888888876654
No 285
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.58 E-value=82 Score=25.88 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=56.1
Q ss_pred CeEEEeCCCC------ChHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 024727 51 PKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (263)
Q Consensus 51 ~~ILitr~~~------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~ 122 (263)
++|++..... ..+-+.+.|+++|..+.....+......+ .+.+.+.+..-..+|+|+..+-...-..++.+.
T Consensus 128 ~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 207 (305)
T 3g1w_A 128 GEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVR 207 (305)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHH
Confidence 4666654432 12346677888888776654433221111 123555565556789999999888888888898
Q ss_pred HcCCC-CcEEEEeChh
Q 024727 123 EAGTP-NVRIGVVGAG 137 (263)
Q Consensus 123 ~~~~~-~~~i~aVG~~ 137 (263)
+.+.. ++.++..+..
T Consensus 208 ~~g~~~di~vig~d~~ 223 (305)
T 3g1w_A 208 LESRAGEIQIISFDTD 223 (305)
T ss_dssp HTTCTTTSEEEEESCC
T ss_pred hcCCCCCeEEEEeCCC
Confidence 88774 7888888764
No 286
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=44.57 E-value=76 Score=21.98 Aligned_cols=109 Identities=6% Similarity=-0.021 Sum_probs=64.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~~~ 124 (263)
+++||+.-... ....+.+.|++.|+++... .+.++....+.. ..+|.|+.-- .++.+ +++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~-~~~~l~~~ 72 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYV--------MSGTDALHAMST-RGYDAVFIDLNLPDTSGLA-LVKQLRAL 72 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEE--------SSHHHHHHHHHH-SCCSEEEEESBCSSSBHHH-HHHHHHHS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEE--------CCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHH-HHHHHHhh
Confidence 56899887654 3567888899998754322 233333344433 5689888753 34444 34445554
Q ss_pred C-CCCcEEEEeChh-HH--HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 125 G-TPNVRIGVVGAG-TA--SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 125 ~-~~~~~i~aVG~~-Ta--~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
. ..+.+++++... .. ...... |.. ++..+..+.+.|.+.+....
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACE------LFD-FYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHH------HCS-EEEESSCCHHHHHHHHHHHC
T ss_pred hccCCCCEEEEECCcchhHHHHHHH------hhH-HheeCCCCHHHHHHHHHHhh
Confidence 2 346677665332 22 233344 644 46777789999998887654
No 287
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=44.54 E-value=58 Score=28.03 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=83.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHHHHHH-cCCCCcEEEEeCh
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 136 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~~~~~l~~-~~~~~~~i~aVG~ 136 (263)
-.+.+++.|++...+.+-+. ...+++...+ ++....|.|+..-|-- + +..++.+.. ...|+. ++
T Consensus 54 k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~-----~~ 125 (285)
T 3p2o_A 54 KAKACEECGIKSLVYHLNEN---ITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF-----HP 125 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCC-----SH
T ss_pred HHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccC-----CH
Confidence 34556778998876654221 1234444444 4557899999988721 1 222222211 122333 33
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCC-CchhHHHHHHhCCCeeeEEeeeccc
Q 024727 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~-~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.-...|- . |-..-+.| -|..+.++.|.... ..|++++++...+ ...-+...|...|++|.-+. ++
T Consensus 126 ~N~g~l~-~------g~~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h--~~- 193 (285)
T 3p2o_A 126 INVGYLN-L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCH--IK- 193 (285)
T ss_dssp HHHHHHH-T------TCCSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEEC--TT-
T ss_pred hhhhhhh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe--CC-
Confidence 3333332 1 32110233 36778887777653 4789999998544 45568888999999875443 21
Q ss_pred cCCCChHHHHHHhCCCCEEEEeCH
Q 024727 214 PVHHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 214 ~~~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
.. .+.+.+...|+|+-+.+
T Consensus 194 --t~---~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 194 --TK---DLSLYTRQADLIIVAAG 212 (285)
T ss_dssp --CS---CHHHHHTTCSEEEECSS
T ss_pred --ch---hHHHHhhcCCEEEECCC
Confidence 11 23344578999988776
No 288
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=44.48 E-value=34 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=26.1
Q ss_pred HHHHhCCCCEEEEeCH-------HHHHHHHHHhcccc---CCCCceEEEEC
Q 024727 222 VLKQALSIPVVAVASP-------SAVRSSWVNLISDT---EQWSNSVACIA 262 (263)
Q Consensus 222 ~~~~l~~~d~vvFtS~-------s~v~~~~~~~~~~~---~~~~~~i~~IG 262 (263)
+.+.+...|.|+|.|| ..++ +|++.+... .+.+.+++.|+
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK-~~iD~~~~~~~~~~~gK~~~~~~ 115 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLK-NAIDWLSRLPDQPLAGKPVLIQT 115 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHH-HHHHHHHTSTTCTTTTCEEEEEE
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHH-HHHHHHhhcCccccCCCeEEEEE
Confidence 4454578999999886 4577 777776431 24566666553
No 289
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=44.47 E-value=60 Score=27.26 Aligned_cols=83 Identities=13% Similarity=-0.001 Sum_probs=49.1
Q ss_pred CCCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeC-HHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITS-PEAGSVFLEA 120 (263)
Q Consensus 48 l~g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS-~~aV~~~~~~ 120 (263)
+..++|.+..+.. ..+.+.+.|+++|+++.....+... ..+. ..+.... . ...|.|++.+ ....-.+++.
T Consensus 133 ~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~l~-~-~~~dav~~~~~~~~a~~~~~~ 209 (362)
T 3snr_A 133 NNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-DTSVAGQALKLV-A-ANPDAILVGASGTAAALPQTT 209 (362)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CSCCHHHHHHHH-H-HCCSEEEEECCHHHHHHHHHH
T ss_pred cCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-CCCHHHHHHHHH-h-cCCCEEEEecCcchHHHHHHH
Confidence 3456777764432 2345778888999887654333221 1222 2333332 2 4688988887 6777778888
Q ss_pred HHHcCCCCcEEEEe
Q 024727 121 WKEAGTPNVRIGVV 134 (263)
Q Consensus 121 l~~~~~~~~~i~aV 134 (263)
+.+.++. .+++.+
T Consensus 210 ~~~~g~~-~p~i~~ 222 (362)
T 3snr_A 210 LRERGYN-GLIYQT 222 (362)
T ss_dssp HHHTTCC-SEEEEC
T ss_pred HHHcCCC-ccEEec
Confidence 8888764 444443
No 290
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=44.41 E-value=13 Score=30.71 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHhC-CCcEEEeceEEeeeCC--C-------------c--hHHHHHHhcCCCccEEEEeCH-------HHHHHHHH
Q 024727 65 LIKALAKH-RIDCLELPLIQHAQGP--D-------------T--DRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (263)
Q Consensus 65 l~~~L~~~-G~~v~~~p~~~~~~~~--~-------------~--~~l~~~l~~l~~~d~IiFTS~-------~aV~~~~~ 119 (263)
+.+.+++. |.++..+.+.+....+ . . +.+......+..+|.|||.|| ..++.|++
T Consensus 24 i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~iD 103 (242)
T 1sqs_A 24 LSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFIE 103 (242)
T ss_dssp HHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHHH
Confidence 34445555 8888877665432110 0 0 233444445567899999885 45666666
Q ss_pred HH
Q 024727 120 AW 121 (263)
Q Consensus 120 ~l 121 (263)
.+
T Consensus 104 r~ 105 (242)
T 1sqs_A 104 RI 105 (242)
T ss_dssp HT
T ss_pred HH
Confidence 55
No 291
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=44.34 E-value=23 Score=29.73 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=44.1
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCc
Q 024727 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103 (263)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~ 103 (263)
+..+|+++..+. ++.|+++|||-...+ ...+++.|.+.|++|+..-.- . ....+.+...+......
T Consensus 10 ~~~~~~~n~~~~----------~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~--~-~~~~~~~~~~~~~~~~~ 76 (281)
T 3v2h_A 10 GVDLGTENLYFQ----------SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG--A-PDEIRTVTDEVAGLSSG 76 (281)
T ss_dssp ----------------------CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC--C-HHHHHHHHHHHHTTCSS
T ss_pred cccccccchhhh----------ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--C-hHHHHHHHHHHhhccCC
Confidence 455665555544 467999999987654 467999999999987643110 0 00012222333222222
Q ss_pred cEEE----EeCHHHHHHHHHHHHHc
Q 024727 104 DWII----ITSPEAGSVFLEAWKEA 124 (263)
Q Consensus 104 d~Ii----FTS~~aV~~~~~~l~~~ 124 (263)
...+ +++...++.+++.+.+.
T Consensus 77 ~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 77 TVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 2222 36788888888776553
No 292
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=44.34 E-value=83 Score=27.67 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCC------chhHHHHHHhCCCeeeEEeeeccccCCCChHH---HHHHh--CCCCEEE-EeCHHHHH
Q 024727 178 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQA--LSIPVVA-VASPSAVR 241 (263)
Q Consensus 178 ~~~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~---~~~~l--~~~d~vv-FtS~s~v~ 241 (263)
++|++++.+... .+.+.+.|++.|+++. +|.-.......+. ..+.+ .++|.|+ +-.++..+
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~---~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D 112 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYE---IFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMD 112 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEE---EEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEE---EeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHH
Confidence 478999988743 2567778888888654 4443333333332 33333 3788777 66777655
No 293
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=44.30 E-value=12 Score=30.96 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCcEEEeceEEe
Q 024727 64 KLIKALAKHRIDCLELPLIQH 84 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~ 84 (263)
.+.+.+++.|.+|..+-+++.
T Consensus 23 ~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 23 VAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp HHHHHHHHHTCEEEEEETTTT
T ss_pred HHHHHHHHCCCEEEEEEhhhc
Confidence 455666777999998877763
No 294
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=44.21 E-value=19 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=11.8
Q ss_pred HHHHhcCCCccEEEEeCH
Q 024727 94 SSVLNADTIFDWIIITSP 111 (263)
Q Consensus 94 ~~~l~~l~~~d~IiFTS~ 111 (263)
......+..+|.|||.||
T Consensus 76 ~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 76 RSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp HHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHhCCEEEEEec
Confidence 334445567888888876
No 295
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=43.88 E-value=54 Score=30.56 Aligned_cols=108 Identities=8% Similarity=-0.007 Sum_probs=64.3
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCChHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE
Q 024727 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI 106 (263)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~~~~l~~~L-~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~I 106 (263)
-|.++.|+..+.+. ..+.|++|+|.-.....-.+.+.| .+.|+++...-.+ ...+.+.++..+..... +.+
T Consensus 262 ~r~~~~~~~~~~d~----~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~---~~~~~~~~~~~~~~~~~-~v~ 333 (525)
T 3aek_B 262 STLRQPWWSASVDS----TYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCY---NREMARPLRTAAAEYGL-EAL 333 (525)
T ss_dssp TTCCHHHHHHSGGG----GGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEES---CGGGHHHHHHHHHHTTC-CCE
T ss_pred HHHHHHHHHHhhhh----hhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecC---chhHHHHHHHHHHhcCC-cEE
Confidence 55677787764432 678999999986555566789999 7999998644221 11123344455544432 455
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024727 107 IITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (263)
Q Consensus 107 iFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (263)
+......++.+ +.+.. ..++.-|..-+...++. |+..
T Consensus 334 i~~D~~el~~~---i~~~~---pDL~ig~~~~~~~a~~~------giP~ 370 (525)
T 3aek_B 334 ITDDYLEVEKA---IEAAA---PELILGTQMERNIAKKL------GLPC 370 (525)
T ss_dssp ECSCHHHHHHH---HHHHC---CSEEEECHHHHHHHHHH------TCCE
T ss_pred EeCCHHHHHHH---HhhcC---CCEEEecchhHHHHHHc------CCCE
Confidence 55555444433 33332 33555556666677777 8765
No 296
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=43.75 E-value=33 Score=28.88 Aligned_cols=112 Identities=4% Similarity=0.074 Sum_probs=64.0
Q ss_pred EEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeec
Q 024727 132 GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 132 ~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (263)
-++|=+|.+++..+ ... ..+. ...++++.+. . ..+++|.++.... -+.+.|++. . ++.|++
T Consensus 82 ralgiAaiNAv~~~------~~~--~~~~--~~~d~~~~~~-~-~~~~kV~vIG~~p---~l~~~l~~~-~---~v~V~d 142 (249)
T 3npg_A 82 RTLGVAAINAVSQY------YID--LREA--KWIDVTELIQ-Q-DEIKRIAIIGNMP---PVVRTLKEK-Y---EVYVFE 142 (249)
T ss_dssp HHHHHHHHHHHHHH------HCC--CTTC--BCCCHHHHHH-T-SCCSEEEEESCCH---HHHHHHTTT-S---EEEEEC
T ss_pred HHHHHHHHHHhhhh------ccc--cCCc--cccCHHHHHh-h-cCCCEEEEECCCH---HHHHHHhcc-C---CEEEEE
Confidence 36677788888776 221 1121 1223344554 2 2458999887774 366777665 3 677778
Q ss_pred cccCCC---C-hHHHH-HHhCCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEECC
Q 024727 212 TEPVHH---V-DQTVL-KQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIAG 263 (263)
Q Consensus 212 ~~~~~~---~-~~~~~-~~l~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IGp 263 (263)
..+... . ++... +.+...|+|+.|.++-+.-.+-+++... .....++-+||
T Consensus 143 ~~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsTlvN~Ti~~lL~~~-~~~~~vvl~GP 198 (249)
T 3npg_A 143 RNMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRA-KKAKLIVITGP 198 (249)
T ss_dssp CSGGGCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHC-SSCSEEEEESG
T ss_pred CCCcccCCCCCChhHHHhhhccCCEEEEEeeeeccCCHHHHHHhC-cccCeEEEEec
Confidence 766421 1 11222 3457999999999988772333333221 22346677776
No 297
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=43.68 E-value=24 Score=29.41 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=44.8
Q ss_pred cccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHH
Q 024727 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVF 117 (263)
Q Consensus 42 ~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~~ 117 (263)
.++...+.|+++|||-...+ ...+++.|.+.|++|+..-. .. ...+++...+... .....+. +++..+++.+
T Consensus 20 ~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 95 (270)
T 3ftp_A 20 GSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTAT--TE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDAL 95 (270)
T ss_dssp ---CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES--SH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHH
T ss_pred cccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHH
Confidence 45667789999999987654 46799999999998764311 00 0112222223221 1222222 3678888888
Q ss_pred HHHHHH
Q 024727 118 LEAWKE 123 (263)
Q Consensus 118 ~~~l~~ 123 (263)
++.+.+
T Consensus 96 ~~~~~~ 101 (270)
T 3ftp_A 96 VESTLK 101 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 298
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=43.54 E-value=13 Score=30.03 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~~~~~l 121 (263)
.+.+.+++.|.++..+-+.+ ..+ +....+.+...|.|||.+| ...+.|++.+
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~---~~d---~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADS---DYD---VKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSS---CCC---HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCc---ccc---HHHHHHHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 34555566688888777664 122 3344445577999999985 4455555543
No 299
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=43.40 E-value=34 Score=27.54 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=44.8
Q ss_pred cEEEEEcCCCC--c--------hhHHHHHHhC--CCeeeEEeeeccccCCCCh--------------------------H
Q 024727 179 CTVLYPASAKA--S--------NEIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------Q 220 (263)
Q Consensus 179 ~~vL~~~g~~~--~--------~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~--------------------------~ 220 (263)
.+||++.|... . +.+.+.|++. |.+|..+.+|+...+.... .
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVAD 84 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHH
Confidence 36777766543 1 3456666665 8999999999854432221 1
Q ss_pred HHHHHhCCCCEEEEeC-------HHHHHHHHHHhc
Q 024727 221 TVLKQALSIPVVAVAS-------PSAVRSSWVNLI 248 (263)
Q Consensus 221 ~~~~~l~~~d~vvFtS-------~s~v~~~~~~~~ 248 (263)
++.+.+...|.|+|.+ |..++ .|++.+
T Consensus 85 ~~~~~~~~aD~iv~~~P~y~~~~p~~lK-~~iD~~ 118 (211)
T 3p0r_A 85 KYLNQFLEADKVVFGFPLWNLTIPAVLH-TYIDYL 118 (211)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHhCCEEEEEcChhcccCCHHHH-HHHHHH
Confidence 1222346899999998 57888 898875
No 300
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=43.37 E-value=33 Score=30.06 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=37.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHcCC---CCcEEEEe
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIGVV 134 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~~~~~l~~~~~---~~~~i~aV 134 (263)
+++.+.+.|+++..+.+-+ . +.. .....+.++|.|||-|| ..++.|++.+..... .+++++++
T Consensus 277 i~~~l~~~g~~v~~~~~~~---~-~~~---~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 277 IAEGAMSEGVDVRVYCLHE---D-DRS---EIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVF 349 (404)
T ss_dssp HHHHHHTTTCEEEEEETTT---S-CHH---HHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEE
T ss_pred HHHHHHhCCCeEEEEECCC---C-CHH---HHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEE
Confidence 4444555676665443311 1 122 22334568999999998 478888887765433 56676666
Q ss_pred C
Q 024727 135 G 135 (263)
Q Consensus 135 G 135 (263)
|
T Consensus 350 ~ 350 (404)
T 2ohh_A 350 G 350 (404)
T ss_dssp E
T ss_pred E
Confidence 5
No 301
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=43.06 E-value=57 Score=27.22 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCc-cEEE--EeCHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIF-DWII--ITSPEAGSVFLE 119 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~~~-d~Ii--FTS~~aV~~~~~ 119 (263)
..++.|+++|||....+ ...+++.|.+.|++|+..-. .. +..+++.+.+... ... .++. +|+..+++.+++
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGR--RP--DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC--CH--HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 35688999999987654 46789999999998765311 00 0011222222111 111 2221 378888888887
Q ss_pred HHHH
Q 024727 120 AWKE 123 (263)
Q Consensus 120 ~l~~ 123 (263)
.+.+
T Consensus 104 ~~~~ 107 (281)
T 4dry_A 104 AVRA 107 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 302
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=43.01 E-value=24 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+.||+||||..... ...+.+.|.+.|++|..+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 6788999999987654 467888998999877654
No 303
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=42.98 E-value=67 Score=27.85 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=81.3
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH------HHHHHHHHHH-cCCCCcEEEEeC
Q 024727 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA------GSVFLEAWKE-AGTPNVRIGVVG 135 (263)
Q Consensus 66 ~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a------V~~~~~~l~~-~~~~~~~i~aVG 135 (263)
.+..++.|++...+-+=+. ...+++.+.+ ++....|.|+.--|-- -+..++.+.. ...|+..-+-+|
T Consensus 57 ~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G 133 (301)
T 1a4i_A 57 LKAAEEIGIKATHIKLPRT---TTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAG 133 (301)
T ss_dssp HHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHH
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHH
Confidence 3446778988876543211 1223444443 4457889998865431 1222222111 112333332222
Q ss_pred hhHHHHHHHhhhhcCCCC-ceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCC-CchhHHHHHHhCCCeeeEEeeec
Q 024727 136 AGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~-~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~-~~~~L~~~L~~~G~~v~~~~vY~ 211 (263)
.|- . |- ...+.| -|++++++.|.... ..|++++++.+.. -...+...|...|++|.-+. .
T Consensus 134 -----~l~-~------g~~~~~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~h--s 197 (301)
T 1a4i_A 134 -----RLA-R------GDLNDCFIP--CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCH--S 197 (301)
T ss_dssp -----HHH-T------TCCSSCCCC--HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEEC--T
T ss_pred -----HHh-c------CCCCCCccC--chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEE--C
Confidence 232 1 31 112333 37788887777654 4689999998874 34557888889999876542 1
Q ss_pred cccCCCChHHHHHHhCCCCEEEEeCHH
Q 024727 212 TEPVHHVDQTVLKQALSIPVVAVASPS 238 (263)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~d~vvFtS~s 238 (263)
. . .++.+.+...|+|+-+.+.
T Consensus 198 -~--t---~~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 198 -K--T---AHLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp -T--C---SSHHHHHTTCSEEEECCCC
T ss_pred -C--c---ccHHHHhccCCEEEECCCC
Confidence 1 1 1244445789988877664
No 304
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=42.84 E-value=1.6e+02 Score=25.15 Aligned_cols=145 Identities=12% Similarity=-0.065 Sum_probs=78.1
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH-HhhhhcCCCCc--eeecCCC-CCHHHHHHHhccCC
Q 024727 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-EVIQSSKCSLD--VAFSPSK-ATGKILASELPKNG 175 (263)
Q Consensus 101 ~~~d~IiFT-S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~-~~~~~~~~G~~--~~~~p~~-~t~e~L~~~l~~~~ 175 (263)
.+.+.||-. ++.........+.+. +++++..+..+. .+. +. +.. ....|.. .....+++.+.+.
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~-~l~~~~------~~~~~f~~~~~~~~~~~~~~~~l~~~- 140 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQR---KVLFMASEPLTD-ALTWEK------GNRYTYRLRPSTYMQAAMLAAEAAKL- 140 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHH---TCCEEECSCCCG-GGTTTT------CCTTEEECSCCHHHHHHHHHHHHTTS-
T ss_pred cCCEEEECCcchHHHHHHHHHHHHc---CceEEecCCCch-hhhhcc------CCCCEEEeCCChHHHHHHHHHHHHHc-
Confidence 468888864 444555566666665 466777654332 222 11 111 1122322 2345566666553
Q ss_pred CCCcEEEEEcCCCC-----chhHHHHHHhC--CCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEe-CHHHHHHHHH
Q 024727 176 KKKCTVLYPASAKA-----SNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSSWV 245 (263)
Q Consensus 176 ~~~~~vL~~~g~~~-----~~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFt-S~s~v~~~~~ 245 (263)
..++|.++..+.. .+.+.+.|++. |+++.....|.... .+.......+ .++|+|++. ++..+. .++
T Consensus 141 -g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~--~d~~~~~~~i~~~~~d~v~~~~~~~~~~-~~~ 216 (387)
T 3i45_A 141 -PITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYK--LDAGPTVQALQQAEPEGLFNVLFGADLP-KFV 216 (387)
T ss_dssp -SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CCHHHHHHHHHHTCCSEEEECCCTTHHH-HHH
T ss_pred -CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCC--cCHHHHHHHHHhCCCCEEEEcCccHHHH-HHH
Confidence 3588888886542 35677788887 78775555554322 2222223333 588988766 566666 666
Q ss_pred HhccccCC-CCceEEE
Q 024727 246 NLISDTEQ-WSNSVAC 260 (263)
Q Consensus 246 ~~~~~~~~-~~~~i~~ 260 (263)
+.+.+... .++.++.
T Consensus 217 ~~~~~~g~~~~~~i~~ 232 (387)
T 3i45_A 217 REGRVRGLFAGRQVVS 232 (387)
T ss_dssp HHHHHHTSSTTCEEEE
T ss_pred HHHHHcCCCCCCeEEe
Confidence 66544332 2455544
No 305
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=42.78 E-value=82 Score=21.85 Aligned_cols=110 Identities=9% Similarity=0.080 Sum_probs=62.4
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (263)
Q Consensus 48 l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~~~~~l 121 (263)
+.+.+||+.-... ....+...|+..|+++... .+.++....+.....+|.|+.-- .++.+ +++.+
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-~~~~l 73 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAV--------SSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-VARVA 73 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-HHHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-HHHHH
Confidence 4567899986653 3456888888888865421 23333344443323789888742 34554 34445
Q ss_pred HHcCCCCcEEEEeC-hhHHHHHHHhhhhcCCCCce-eecCCCCCHHHHHHHhccC
Q 024727 122 KEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDV-AFSPSKATGKILASELPKN 174 (263)
Q Consensus 122 ~~~~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~-~~~p~~~t~e~L~~~l~~~ 174 (263)
.+.. ++++++.+. ........+. +.. ++..+..+.+.|...+.+.
T Consensus 74 ~~~~-~~~~ii~~s~~~~~~~~~~~-------~~~~~~l~kP~~~~~l~~~i~~~ 120 (132)
T 2rdm_A 74 REID-PNMPIVYISGHAALEWASNG-------VPDSIILEKPFTSAQLITAVSQL 120 (132)
T ss_dssp HHHC-TTCCEEEEESSCCTTHHHHS-------CTTCEEEESSCCHHHHHHHHHHH
T ss_pred HhcC-CCCCEEEEeCCccHHHHHhh-------cCCcceEeCCCCHHHHHHHHHHH
Confidence 5443 356666653 3333333322 221 3666667888888777653
No 306
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=42.72 E-value=1.2e+02 Score=26.26 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=27.5
Q ss_pred cEEEEeChhHHHHHHHhhhhcCCCCceeecCCCC--CHHHH--HHHhccCCCCCcEEEEEcCCCCchhHHHHHH
Q 024727 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA--TGKIL--ASELPKNGKKKCTVLYPASAKASNEIEEGLS 198 (263)
Q Consensus 129 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~--t~e~L--~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~ 198 (263)
+-|.--|..|-..+... |..+.++|-.+ +.+.. ++.+.+ .|.-+++...+...+.|.+.+.
T Consensus 255 lvI~raG~~Tv~E~~a~------G~P~Ilip~p~~~~~~Q~~NA~~l~~---~G~a~~l~~~~~~~~~L~~~i~ 319 (365)
T 3s2u_A 255 LVICRAGALTVSELTAA------GLPAFLVPLPHAIDDHQTRNAEFLVR---SGAGRLLPQKSTGAAELAAQLS 319 (365)
T ss_dssp EEEECCCHHHHHHHHHH------TCCEEECC-----CCHHHHHHHHHHT---TTSEEECCTTTCCHHHHHHHHH
T ss_pred EEEecCCcchHHHHHHh------CCCeEEeccCCCCCcHHHHHHHHHHH---CCCEEEeecCCCCHHHHHHHHH
Confidence 33333466665555666 77766555321 11111 233333 2334444444444455555554
No 307
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=42.69 E-value=2e+02 Score=26.23 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=29.2
Q ss_pred cCCCCCCCeEEEeCCC-CChHHHHHHHHhCCCcEEE
Q 024727 44 ASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLE 78 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~-~~~~~l~~~L~~~G~~v~~ 78 (263)
..+||.|.||...-.- .+...|.+.|.+.|++|..
T Consensus 37 ~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~ 72 (436)
T 3h9u_A 37 PSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRW 72 (436)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEE
Confidence 3499999999988764 3677899999999999975
No 308
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=42.68 E-value=23 Score=29.32 Aligned_cols=95 Identities=9% Similarity=0.103 Sum_probs=58.3
Q ss_pred CCCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHH
Q 024727 49 SNPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVF 117 (263)
Q Consensus 49 ~g~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~ 117 (263)
..++|++..+... ..-+.+.++++|..+.....+... .+. +.+.+.+.....+|+|++.+-.....+
T Consensus 126 G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~ 203 (288)
T 3gv0_A 126 GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIAL 203 (288)
T ss_dssp TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHH
T ss_pred CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHH
Confidence 4467877754422 234667788888765433222111 122 234555544457899999998888888
Q ss_pred HHHHHHcCC---CCcEEEEeChhHHHHHHHh
Q 024727 118 LEAWKEAGT---PNVRIGVVGAGTASIFEEV 145 (263)
Q Consensus 118 ~~~l~~~~~---~~~~i~aVG~~Ta~~L~~~ 145 (263)
++.+.+.++ +++.+++.+......+..-
T Consensus 204 ~~al~~~g~~vP~di~vig~d~~~~~~~~~p 234 (288)
T 3gv0_A 204 VAGFEAAGVKIGEDVDIVSKQSAEFLNWIKP 234 (288)
T ss_dssp HHHHHTTTCCTTTSCEEEEEESSTTHHHHCT
T ss_pred HHHHHHcCCCCCCceEEEEecChHHHhccCC
Confidence 888988875 4788888875543333333
No 309
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=42.51 E-value=26 Score=29.25 Aligned_cols=92 Identities=15% Similarity=-0.030 Sum_probs=47.3
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-C
Q 024727 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-I 102 (263)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~ 102 (263)
|..++.+..||++.- ....+.|+++|||-...+ ...+++.|.+.|++|...-. ......+.+.+.+...+ .
T Consensus 10 ~~~~~~~~~~~~~mm----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~---~~~~~~~~~~~~l~~~~~~ 82 (271)
T 3v2g_A 10 GVDLGTENLYFQSMM----TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV---NAAERAQAVVSEIEQAGGR 82 (271)
T ss_dssp ----------CHHHH----TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHTTCC
T ss_pred cccccccccchhhhc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHHHhcCCc
Confidence 445566677777732 124688999999987654 46799999999998764311 00001122233332222 2
Q ss_pred ccEEE--EeCHHHHHHHHHHHHH
Q 024727 103 FDWII--ITSPEAGSVFLEAWKE 123 (263)
Q Consensus 103 ~d~Ii--FTS~~aV~~~~~~l~~ 123 (263)
..++. +++...++.+++.+.+
T Consensus 83 ~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 83 AVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 22221 3678888888776654
No 310
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=42.38 E-value=28 Score=30.38 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=40.7
Q ss_pred CccEEEEeC---------HHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHH-hhhhcCCCCceee--c--CC-CCC---
Q 024727 102 IFDWIIITS---------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-VIQSSKCSLDVAF--S--PS-KAT--- 163 (263)
Q Consensus 102 ~~d~IiFTS---------~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~--~--p~-~~t--- 163 (263)
+..+|+||| .+-++...+.+++ ..+..+++||.+....++. + |..+.. . .+ .++
T Consensus 104 ~~~~IvitSDrGLCG~fNsni~k~~~~~i~~--~~g~~l~~VG~Kg~~~~~~~~------~~~i~~~~~~~~~~~p~~~~ 175 (311)
T 2xok_G 104 KELIVAITSDKGLCGSIHSQLAKAVRRHLND--QPNADIVTIGDKIKMQLLRTH------PNNIKLSINGIGKDAPTFQE 175 (311)
T ss_dssp CEEEEEECCSCCSSTTHHHHHHHHHHHSSSS--CTTCEEEEESHHHHHHHHTTS------TTTEEEEEESCTTSCCCHHH
T ss_pred ceEEEEEeCCCcccchhhHHHHHHHHHHHHh--cCCCEEEEechHHHHHHHHhc------CCCeEEEecccCCCCCCHHH
Confidence 345999999 7777766554332 1223499999999999997 6 765532 1 12 333
Q ss_pred HHHHHHHhccC
Q 024727 164 GKILASELPKN 174 (263)
Q Consensus 164 ~e~L~~~l~~~ 174 (263)
..++++.+.+.
T Consensus 176 a~~i~~~i~~~ 186 (311)
T 2xok_G 176 SALIADKLLSV 186 (311)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44566666553
No 311
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=42.38 E-value=32 Score=28.07 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=52.5
Q ss_pred CeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 51 PKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 51 ~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
++|++..+.. +..-+.+.|+++|..+... .. ...+. +.++..+.....+|+|++++-...-..++
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~ 199 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QP--ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 199 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--EE--CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--cC--CCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHH
Confidence 5777664321 1233667888888765421 11 11121 23455565446789999999888888888
Q ss_pred HHHHcCCCCcEEEEeCh
Q 024727 120 AWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (263)
.+.+.+.+++.++..+.
T Consensus 200 al~~~g~~dv~vvGfD~ 216 (271)
T 2dri_A 200 ALQTAGKSDVMVVGFDG 216 (271)
T ss_dssp HHHHHTCCSCEEEEEEC
T ss_pred HHHHcCCCCcEEEEecC
Confidence 88888887788887754
No 312
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=42.31 E-value=72 Score=27.82 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAW 121 (263)
Q Consensus 49 ~g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS--~~aV~~~~~~l 121 (263)
..++|.+..+.. ..+.+.+.+++.|+++.....|... ..|...+-..++. .+.|.|++++ +.....|++.+
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP-VSDWGPTLAKLRA-DPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS-CSCCHHHHHHHHH-SCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC-CccHHHHHHHHHh-cCCCEEEEccccCchHHHHHHHH
Confidence 457887776643 2345677778889988765444321 1233322233322 5789999874 46677788888
Q ss_pred HHcCCCCcEEEE
Q 024727 122 KEAGTPNVRIGV 133 (263)
Q Consensus 122 ~~~~~~~~~i~a 133 (263)
.+.++ +..++.
T Consensus 241 ~~~g~-~~~~~~ 251 (419)
T 3h5l_A 241 MTDPT-NSLVYL 251 (419)
T ss_dssp TTSCC-SCEEEE
T ss_pred HHcCC-CceEEe
Confidence 87776 445544
No 313
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=42.25 E-value=28 Score=28.88 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=44.7
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHH
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLE 119 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~ 119 (263)
+|...+.|+++|||-...+ ...+++.|.+.|++|...- ...+..+++...+ -....++. +++..+++.+++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~----r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 4 SMTAELENKVAIITGACGGIGLETSRVLARAGARVVLAD----LPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALID 77 (271)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEc----CCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHH
Confidence 4567789999999988654 4679999999999876431 1111122222222 12222222 367888888887
Q ss_pred HHHH
Q 024727 120 AWKE 123 (263)
Q Consensus 120 ~l~~ 123 (263)
.+.+
T Consensus 78 ~~~~ 81 (271)
T 3tzq_B 78 FTID 81 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 314
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=42.22 E-value=74 Score=27.04 Aligned_cols=87 Identities=11% Similarity=-0.043 Sum_probs=52.9
Q ss_pred HHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-h-HHHHHHhCCCCEEEEeCHHHHHHHHH
Q 024727 168 ASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-D-QTVLKQALSIPVVAVASPSAVRSSWV 245 (263)
Q Consensus 168 ~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~-~~~~~~l~~~d~vvFtS~s~v~~~~~ 245 (263)
.+.+.+.. ++++|.++... +.+.+.|+ .|. ++.|++..+..-. + ......+...|+|+.|.++-+.-.+-
T Consensus 132 ~~~~~~~~-~g~kV~vIG~~---P~i~~~l~-~~~---~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~ 203 (270)
T 2h1q_A 132 FIMSQNEV-KGKKVGVVGHF---PHLESLLE-PIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLP 203 (270)
T ss_dssp HHHTTTTT-TTSEEEEESCC---TTHHHHHT-TTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHH
T ss_pred HHHHHhhc-CCCEEEEECCC---HHHHHHHh-CCC---CEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHH
Confidence 33443333 57899999885 44666664 454 6677777765432 1 22333457999999999998772333
Q ss_pred HhccccCCCCceEEEECC
Q 024727 246 NLISDTEQWSNSVACIAG 263 (263)
Q Consensus 246 ~~~~~~~~~~~~i~~IGp 263 (263)
+++... .....++-+||
T Consensus 204 ~lL~~~-~~a~~vvl~GP 220 (270)
T 2h1q_A 204 RLLELS-RNARRITLVGP 220 (270)
T ss_dssp HHHHHT-TTSSEEEEEST
T ss_pred HHHHhC-ccCCeEEEEec
Confidence 333221 22448888887
No 315
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=42.19 E-value=30 Score=28.89 Aligned_cols=158 Identities=12% Similarity=0.141 Sum_probs=81.5
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEE--------e-eeCCCchHHHHH---HhcCCCccEEE--
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQ--------H-AQGPDTDRLSSV---LNADTIFDWII-- 107 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~--------~-~~~~~~~~l~~~---l~~l~~~d~Ii-- 107 (263)
+|...+.|+++|||-...+ ...+++.|.+.|++|+..-.-. . ....+.+.+++. +... .....+
T Consensus 4 ~m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (286)
T 3uve_A 4 SMTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH-NRRIVTAE 82 (286)
T ss_dssp --CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CCCcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc-CCceEEEE
Confidence 4567789999999988764 4679999999999987642110 0 000112223222 2222 222332
Q ss_pred --EeCHHHHHHHHHHHHHc-CCCCcEEEEeCh---------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 108 --ITSPEAGSVFLEAWKEA-GTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 108 --FTS~~aV~~~~~~l~~~-~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
+++..+++.+++.+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.-.+.++..+.+..
T Consensus 83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~~~~~~~~~~~~ 155 (286)
T 3uve_A 83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEM-------IDINLAGVWKTVKAGVPHMIAGG 155 (286)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHH-------HHHhhHHHHHHHHHHHHHHHhCC
Confidence 37888898888776543 221333333331 233444443 22222221122233334443321
Q ss_pred CCCcEEEEEcCCCCc--------------------hhHHHHHHhCCCeeeEEee
Q 024727 176 KKKCTVLYPASAKAS--------------------NEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~--------------------~~L~~~L~~~G~~v~~~~v 209 (263)
++++|+++.+..+. ..|...|...|+.|..+.-
T Consensus 156 -~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~P 208 (286)
T 3uve_A 156 -RGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHP 208 (286)
T ss_dssp -SCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred -CCcEEEEECchhhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEec
Confidence 24688888764321 2344556667888776654
No 316
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.17 E-value=44 Score=28.27 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred cEEEEEcCC---CCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeC-------HHHHHHHHHHhc
Q 024727 179 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSAVRSSWVNLI 248 (263)
Q Consensus 179 ~~vL~~~g~---~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS-------~s~v~~~~~~~~ 248 (263)
+++|++.|. .+...|.+.|++.|++|+.+..-+- + ...+ .+.++|+|++.. +...+ .+.+.+
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~--~~~~----~L~~yDvIIl~d~~~~~l~~~~~~-~L~~yV 76 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L--DVGE----LLAKQDLVILSDYPAERMTAQAID-QLVTMV 76 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B--CSSH----HHHTCSEEEEESCCGGGBCHHHHH-HHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc-c--cChh----HHhcCCEEEEcCCccccCCHHHHH-HHHHHH
Confidence 689999764 4567899999999999977664331 1 1112 245899999874 44455 555555
Q ss_pred c
Q 024727 249 S 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 77 ~ 77 (259)
T 3rht_A 77 K 77 (259)
T ss_dssp H
T ss_pred H
Confidence 3
No 317
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=42.03 E-value=84 Score=25.04 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=49.4
Q ss_pred CcEEEEEcCCC-----CchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHH-----HHHHHHH
Q 024727 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSWV 245 (263)
Q Consensus 178 ~~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s-----~v~~~~~ 245 (263)
++++++.+..+ +...+...|+.+|++|..+-. ..+.+++.+.+ .++|+|.+++.. .++ .+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~-~~i 160 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV------DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMK-STI 160 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS------SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHH-HHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEeccccccHHHHH-HHH
Confidence 45787776653 357778899999998865553 12334444433 389999998742 345 555
Q ss_pred HhccccCC-CCceEEEECC
Q 024727 246 NLISDTEQ-WSNSVACIAG 263 (263)
Q Consensus 246 ~~~~~~~~-~~~~i~~IGp 263 (263)
+.+++... .++++++=|+
T Consensus 161 ~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHTTCGGGCEEEEEST
T ss_pred HHHHhcCCCCCCeEEEECC
Confidence 55544322 3588887764
No 318
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=41.99 E-value=30 Score=28.05 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhC-CCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 50 NPKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~~~-------~~~l~~~L~~~-G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
.++|++...... .+-+.+.++++ |.++... .......+ .+.+.+.+..-.++|+|+.++-......++
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 204 (276)
T 3ksm_A 127 ERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALV 204 (276)
T ss_dssp CEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHH
T ss_pred CceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHH
Confidence 357777754322 23355666666 6554421 11110000 123555565556789999999888888888
Q ss_pred HHHHcCC-CCcEEEEeChh
Q 024727 120 AWKEAGT-PNVRIGVVGAG 137 (263)
Q Consensus 120 ~l~~~~~-~~~~i~aVG~~ 137 (263)
.+.+.++ +++.++..+..
T Consensus 205 al~~~g~p~di~vig~d~~ 223 (276)
T 3ksm_A 205 AIRQSGMSKQFGFIGFDQT 223 (276)
T ss_dssp HHHHTTCTTSSEEEEESCC
T ss_pred HHHHcCCCCCeEEEEeCCC
Confidence 8888886 57888888754
No 319
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.95 E-value=1.1e+02 Score=23.13 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (263)
Q Consensus 47 ~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~l 121 (263)
++.+.+||+.-... ....+...|++.|+.+... .+.++....+ ....+|.|+.- ..++.+.+- .+
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~-~~~~~dlvl~D~~lp~~~g~~~~~-~l 73 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQA--------HNKDEALKLA-GAEKFEFITVXLHLGNDSGLSLIA-PL 73 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHH-TTSCCSEEEECSEETTEESHHHHH-HH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-hhCCCCEEEEeccCCCccHHHHHH-HH
Confidence 34578999996654 3467888888888754321 2333333444 23568988874 234555443 34
Q ss_pred HHcCCCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 122 KEAGTPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 122 ~~~~~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
.+.. .+++|+++ |... .....+. |.. ++..+..+.+.|...+...
T Consensus 74 ~~~~-~~~~ii~lt~~~~~~~~~~a~~~------Ga~-~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 74 CDLQ-PDARILVLTGYASIATAVQAVKD------GAD-NYLAKPANVESILAALQTN 122 (184)
T ss_dssp HHHC-TTCEEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHTSTT
T ss_pred HhcC-CCCCEEEEeCCCCHHHHHHHHHh------CHH-HheeCCCCHHHHHHHHHHH
Confidence 4433 35666655 4322 3344456 765 4777778999999888654
No 320
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=41.93 E-value=37 Score=26.22 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhc--C-CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEe
Q 024727 59 RGKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (263)
Q Consensus 59 ~~~~~~l~~~L~~~G-~~v~~~p~~~~~~~~~~~~l~~~l~~--l-~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aV 134 (263)
..+..++.+.|++.| ..+..+. . .+...+...++. + ..+|.++..+..--+.|...++..+.+.-.+++|
T Consensus 107 ~~~~~~~l~~l~~~g~~~~~i~t---~---~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~i 180 (234)
T 3ddh_A 107 LPGVKETLKTLKETGKYKLVVAT---K---GDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMV 180 (234)
T ss_dssp CTTHHHHHHHHHHHCCCEEEEEE---E---SCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CccHHHHHHHHHhCCCeEEEEEe---C---CchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence 345677788888888 7655432 1 112222233322 2 3567777766666666666666667666678888
Q ss_pred ChhH---HHHHHHhhhhcCCCCceeecCC
Q 024727 135 GAGT---ASIFEEVIQSSKCSLDVAFSPS 160 (263)
Q Consensus 135 G~~T---a~~L~~~~~~~~~G~~~~~~p~ 160 (263)
|..- -..++.. |+.+..++.
T Consensus 181 GD~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 181 GNSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp ESCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCCcHHHhHHHHHC------CCeEEEecC
Confidence 8773 4677887 888776643
No 321
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=41.60 E-value=1.1e+02 Score=24.58 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH-----HhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEE
Q 024727 110 SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-----EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP 184 (263)
Q Consensus 110 S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~-----~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~ 184 (263)
|+..++..-+.....+.+++.++ .|... .+. .. .++..+.-.-.+.+.+++.+.+...+|+.+++.
T Consensus 103 s~~~~~~a~~~~~~~~~~~v~~~-~~d~~--~~~~~~~~~~------~fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 103 LNKRITFLEKLSEALQLENTTFC-HDRAE--TFGQRKDVRE------SYDIVTARAVARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp CHHHHHHHHHHHHHHTCSSEEEE-ESCHH--HHTTCTTTTT------CEEEEEEECCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCEEEE-eccHH--HhcccccccC------CccEEEEeccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 45555555555555554443333 44432 221 11 344433333356778888887777788999888
Q ss_pred cCCCCch---hHHHHHHhCCCeeeEEeeec
Q 024727 185 ASAKASN---EIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 185 ~g~~~~~---~L~~~L~~~G~~v~~~~vY~ 211 (263)
.|....+ .+.+.++..|+.+.++.-|.
T Consensus 174 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 174 KAASAEEELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp ECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eCCCchHHHHHHHHHHHHcCCeEeEEEEEe
Confidence 8766544 35567888999887665543
No 322
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=41.31 E-value=30 Score=28.74 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=28.6
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
+|...+.|+++|||-...+ ...+++.|.+.|++|+.+
T Consensus 4 ~m~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~ 41 (277)
T 3tsc_A 4 SMAGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAV 41 (277)
T ss_dssp ---CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEE
Confidence 4566789999999988764 467999999999988764
No 323
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=41.29 E-value=1.2e+02 Score=23.36 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=70.1
Q ss_pred CCeEEEeCCCCC---hHHHHHHHHhCCCcEEEeceEEee-eCCCch----HHHHHHhcCCCccEEEEeCHHHHHHHHHHH
Q 024727 50 NPKVVVTRERGK---NGKLIKALAKHRIDCLELPLIQHA-QGPDTD----RLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (263)
Q Consensus 50 g~~ILitr~~~~---~~~l~~~L~~~G~~v~~~p~~~~~-~~~~~~----~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l 121 (263)
.++|.|-....+ .+.+.+.|++.|++|+.+-.+... +. |+. .+-+.+. -.+.-.+++-|..++....+
T Consensus 7 ~mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~-dYpd~a~~va~~V~-~~d~GIliCGTGiG~siaAN-- 82 (148)
T 4em8_A 7 VKRVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSV-DYPDYVHDVVREVS-DTSFGVLICGTGIGMSIAAN-- 82 (148)
T ss_dssp CSEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCTTCSCC-CGGGGTHHHHTTCB-TTBEEEEEESSSHHHHHHHT--
T ss_pred eeEEEEEECchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCC-ChHHHHHHHHHHHH-HhCeEEEEccCcHHHHHHHh--
Confidence 467888765432 457788889999999999777544 32 222 2222231 12334566667777655433
Q ss_pred HHcCCCCcEEEE-eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 122 KEAGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 122 ~~~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
..++++.+. --+.|++..+++- .-++...+......+++..|.+
T Consensus 83 ---Kv~GIRAAl~~d~~sA~~ar~hN-----nANVL~lG~rvig~~lA~~iv~ 127 (148)
T 4em8_A 83 ---RHKNIRAALCSSTMLAKLSREHN-----DANVLCFGSRYIDPDTAQSVLY 127 (148)
T ss_dssp ---TSTTCCEEECSSHHHHHHHHHHH-----CCCEEEEETTTSCHHHHHHHHH
T ss_pred ---cCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEchhhhCHHHHHHHHH
Confidence 345777754 4778888888872 4455556777777777766654
No 324
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=41.12 E-value=42 Score=26.41 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=44.7
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-H-HHH------HHHHH
Q 024727 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-SVF------LEAWK 122 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-V-~~~------~~~l~ 122 (263)
++|+|..-...-....+.|++.|+++..++. .+ .+.++|.||++-... + +.+ .+.++
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~--------~~-------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 66 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR--------PE-------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLR 66 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS--------GG-------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC--------hH-------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHH
Confidence 5788886444445666999999998776542 11 235799999986632 2 111 11111
Q ss_pred HcCCCCcEEEEeChhHHHHHHH
Q 024727 123 EAGTPNVRIGVVGAGTASIFEE 144 (263)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~L~~ 144 (263)
+....+++++.|.-.. +.|-.
T Consensus 67 ~~~~~~~pilgIC~G~-q~l~~ 87 (196)
T 2nv0_A 67 EFAAQGKPMFGTCAGL-IILAK 87 (196)
T ss_dssp HHHHTTCCEEEETHHH-HHHSB
T ss_pred HHHHCCCcEEEECHHH-HHHHH
Confidence 1111367888776543 34443
No 325
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=40.99 E-value=88 Score=26.89 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=34.2
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhC--CCCEEEEeCH
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVASP 237 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~--~~d~vvFtS~ 237 (263)
.+|++|++.........+.+.++..|+++..+++-... ..+.+++.+.+. +..+|+++++
T Consensus 84 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~l~~~i~~~~~~~v~~~~~ 145 (416)
T 3isl_A 84 EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGT--VFDPEDIIREIKKVKPKIVAMVHG 145 (416)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCC--CCCHHHHHHHHhhCCCcEEEEEcc
Confidence 35677777776544333556677778877776653211 123344444432 5677777765
No 326
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=40.98 E-value=40 Score=27.59 Aligned_cols=75 Identities=9% Similarity=-0.042 Sum_probs=46.7
Q ss_pred CCCCCCeEEEeCCCC---ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC--ccEEE--EeCHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII--ITSPEAGSVFL 118 (263)
Q Consensus 46 ~~l~g~~ILitr~~~---~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~--~d~Ii--FTS~~aV~~~~ 118 (263)
..+.|+++|||-... -...+++.|.+.|++|+.. .+.. ...+.+.+.....+. ..++. +|+...++.++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFT--YAGE--RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEE--ESSG--GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEe--cCch--HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 568899999998763 2567999999999987643 1111 112333343333322 23322 47889999888
Q ss_pred HHHHHc
Q 024727 119 EAWKEA 124 (263)
Q Consensus 119 ~~l~~~ 124 (263)
+.+.+.
T Consensus 79 ~~~~~~ 84 (266)
T 3oig_A 79 ASIKEQ 84 (266)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877553
No 327
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=40.77 E-value=28 Score=29.09 Aligned_cols=74 Identities=7% Similarity=-0.071 Sum_probs=43.8
Q ss_pred CCCCCCeEEEeCCC--CC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRER--GK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~--~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~ 120 (263)
..+.|++||||-.. .+ ...+++.|.+.|++|+..- +.. ...+.++......+...++. +++..+++.+++.
T Consensus 17 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~--r~~--~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 92 (285)
T 2p91_A 17 GLLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTY--ATP--KLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKF 92 (285)
T ss_dssp CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEe--CCH--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 34889999999875 33 5789999999999876431 111 11112222211223333322 3678888888876
Q ss_pred HHH
Q 024727 121 WKE 123 (263)
Q Consensus 121 l~~ 123 (263)
+.+
T Consensus 93 ~~~ 95 (285)
T 2p91_A 93 LEE 95 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 328
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=40.71 E-value=30 Score=28.81 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=43.7
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC----ccEEE--EeCHHHHH
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI----FDWII--ITSPEAGS 115 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~----~d~Ii--FTS~~aV~ 115 (263)
+|...+.|++||||-...+ ...+++.|.+.|++|...- +.. +..+++.+.+...+. ..++. +++...++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~ 79 (281)
T 3svt_A 4 SMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVG--RNP--DKLAGAVQELEALGANGGAIRYEPTDITNEDETA 79 (281)
T ss_dssp ----CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHH
T ss_pred CCccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHH
Confidence 4567789999999987654 4678999999999876431 100 011222233332221 11211 36788888
Q ss_pred HHHHHHHH
Q 024727 116 VFLEAWKE 123 (263)
Q Consensus 116 ~~~~~l~~ 123 (263)
.+++.+.+
T Consensus 80 ~~~~~~~~ 87 (281)
T 3svt_A 80 RAVDAVTA 87 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776654
No 329
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=40.62 E-value=59 Score=27.97 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=82.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHH--HH--HHHHHHHHH-cCCCCcEEEEeCh
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPE--AG--SVFLEAWKE-AGTPNVRIGVVGA 136 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~---l~~l~~~d~IiFTS~~--aV--~~~~~~l~~-~~~~~~~i~aVG~ 136 (263)
-.+.+++.|++...+.+-+. ...+++... +++....|.|+..-|- .+ +..++.+.. ...|+. ++
T Consensus 56 k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~-----~~ 127 (286)
T 4a5o_A 56 KRKDCEEVGFLSQAYDLPAE---TSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGF-----HP 127 (286)
T ss_dssp HHHHHHHTTCEEEEEEECTT---CCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCC-----SH
T ss_pred HHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccC-----Ch
Confidence 34566788998876654221 123444444 3455689999988772 11 122222211 112333 33
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcC-CCCchhHHHHHHhCCCeeeEEeeeccc
Q 024727 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTE 213 (263)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g-~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (263)
.-...|- . |-. .+.| -|..+.++.|.... ..|++++++.. +....-+...|...|++|.-+. ++
T Consensus 128 ~N~g~l~-~------g~~-~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~h--s~- 194 (286)
T 4a5o_A 128 YNIGRLA-Q------RMP-LLRP--CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTH--RF- 194 (286)
T ss_dssp HHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEEC--TT-
T ss_pred hhhHHHh-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEe--CC-
Confidence 3333332 2 322 2333 47788888777653 47899999984 4345668888999999885542 21
Q ss_pred cCCCChHHHHHHhCCCCEEEEeCH
Q 024727 214 PVHHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 214 ~~~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
+.. +.+.+...|+|+-+.+
T Consensus 195 --T~~---L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 195 --TRD---LADHVSRADLVVVAAG 213 (286)
T ss_dssp --CSC---HHHHHHTCSEEEECCC
T ss_pred --CcC---HHHHhccCCEEEECCC
Confidence 112 2333458899988776
No 330
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=40.58 E-value=91 Score=21.71 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=62.3
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC------CCccEEEEe----CHHHHHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD------TIFDWIIIT----SPEAGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l------~~~d~IiFT----S~~aV~~~~ 118 (263)
+++||+.-... ....+...|++.|+... +....+.++....+... ..+|.|+.- ..++.+ ++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~------v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE------VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-VL 74 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE------EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH-HH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce------EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH-HH
Confidence 67888886654 35678888998887321 11112334444445331 568988874 224444 34
Q ss_pred HHHHHcC-CCCcEEEEe-Chh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 119 EAWKEAG-TPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 119 ~~l~~~~-~~~~~i~aV-G~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+.+.+.. ..+++++.+ +.. ....+.+. |.. ++.++..+.+.|...+..
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 127 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL------HVN-CYITKSANLSQLFQIVKG 127 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHHHHHHHHHh------chh-heecCCCCHHHHHHHHHH
Confidence 4455432 135666655 332 22333445 765 467777888888877754
No 331
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=40.26 E-value=1e+02 Score=26.44 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhC--CCCEEEEeC
Q 024727 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVAS 236 (263)
Q Consensus 177 ~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~--~~d~vvFtS 236 (263)
+|++|++.........+.+.++..|+++..+++=.. -..+.+++.+.+. +..+|++++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~ 146 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG--EVFTPDQVEDAVKRIRPRLLLTVQ 146 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEES
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHhhCCCeEEEEeC
Confidence 456666666544333355566667777666654111 1112334443332 566666666
No 332
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=40.18 E-value=41 Score=28.81 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=78.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHHHHH-HcCCCCcEEEEeCh
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLEAWK-EAGTPNVRIGVVGA 136 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~~~~~l~-~~~~~~~~i~aVG~ 136 (263)
-.+..++.|+ ...+-+-+ ....+++.+.+ ++..+.|.|+.--| ..+ +...+.+. +...|+.. +
T Consensus 48 k~k~~~~~Gi-~~~~~lp~---~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~-----p 118 (276)
T 3ngx_A 48 KIRRGKKIGI-AVDLEKYD---DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALS-----P 118 (276)
T ss_dssp HHHHHHHHTC-EEEEEEES---SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCS-----H
T ss_pred HHHHHHHCCe-EEEEECCC---CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCC-----c
Confidence 3445567798 65443322 11234444443 45578999997766 222 22222211 11123333 3
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCC-CchhHHHHHHhCCCeeeEEeeeccccC
Q 024727 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.-...|- . |-. .+.| -|..+.++.|......|++++++...+ ...-+...|.+.|++|.-+ .++
T Consensus 119 ~n~G~l~-~------g~~-~~~P--cTp~gv~~lL~~~~l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~--~~~--- 183 (276)
T 3ngx_A 119 YNQGLIA-L------NRE-FLVP--ATPRAVIDIMDYYGYHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVC--HSK--- 183 (276)
T ss_dssp HHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHHTCCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEE--CTT---
T ss_pred cchhhhh-c------CCC-CCCC--CcHHHHHHHHHHhCcCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEE--eCC---
Confidence 2222332 2 322 2334 477788877776656789999998653 4556888889999987543 221
Q ss_pred CCChHHHHHHhCCCCEEEEeCH
Q 024727 216 HHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 216 ~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
... +.+.+...|+|+-+-+
T Consensus 184 t~~---L~~~~~~ADIVI~Avg 202 (276)
T 3ngx_A 184 TKD---IGSMTRSSKIVVVAVG 202 (276)
T ss_dssp CSC---HHHHHHHSSEEEECSS
T ss_pred ccc---HHHhhccCCEEEECCC
Confidence 122 2233357888887765
No 333
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=40.15 E-value=28 Score=29.76 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=48.9
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~~~~~l 121 (263)
.|.+|+++.+......+...++..|+++..+|+-. ....|.+.+++.+++-.+...|++++++ + ++.+.+.+
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 172 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVA 172 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHH
Confidence 36789999876543347777788899998887632 1113456677777433467889888754 2 45566666
Q ss_pred HHc
Q 024727 122 KEA 124 (263)
Q Consensus 122 ~~~ 124 (263)
++.
T Consensus 173 ~~~ 175 (386)
T 2dr1_A 173 KEH 175 (386)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 334
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=40.11 E-value=32 Score=28.61 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=81.8
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEE-----eeeC-CCchHHH---HHHhcCCCccEEE----E
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQ-----HAQG-PDTDRLS---SVLNADTIFDWII----I 108 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~-----~~~~-~~~~~l~---~~l~~l~~~d~Ii----F 108 (263)
+.+..+.|+++|||-...+ ...+++.|.+.|++|+..-.-. .... .+.+.++ ..+... ...... +
T Consensus 8 ~~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv 86 (280)
T 3pgx_A 8 GQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-GRKALTRVLDV 86 (280)
T ss_dssp ---CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-TCCEEEEECCT
T ss_pred ccccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-CCeEEEEEcCC
Confidence 4456789999999988754 4679999999999987542100 0000 1222222 223222 222322 3
Q ss_pred eCHHHHHHHHHHHHHc-CCCCcEEEEeCh--------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCc
Q 024727 109 TSPEAGSVFLEAWKEA-GTPNVRIGVVGA--------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC 179 (263)
Q Consensus 109 TS~~aV~~~~~~l~~~-~~~~~~i~aVG~--------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~ 179 (263)
++..+++.+++.+.+. +.-+.-|-+.|- .+.+.+++. +.+++...-.-.+.++..+.+.. .++
T Consensus 87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~~~~~~~~~~~~-~~g 158 (280)
T 3pgx_A 87 RDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTV-------IGVNLTGTWRTLRATVPAMIEAG-NGG 158 (280)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHC-SCE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH-------HhhhhHHHHHHHHHHHHHHHhcC-CCC
Confidence 6788888888766543 221333333332 244444444 22222221112233444443321 257
Q ss_pred EEEEEcCCCCc--------------------hhHHHHHHhCCCeeeEEeee
Q 024727 180 TVLYPASAKAS--------------------NEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 180 ~vL~~~g~~~~--------------------~~L~~~L~~~G~~v~~~~vY 210 (263)
+|+++.+..+. ..|...|...|+.|..+.--
T Consensus 159 ~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG 209 (280)
T 3pgx_A 159 SIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPY 209 (280)
T ss_dssp EEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred EEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 88888764321 23455566678888766543
No 335
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=40.11 E-value=34 Score=28.73 Aligned_cols=33 Identities=6% Similarity=0.072 Sum_probs=27.4
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.|.||++|||-...+ ...+++.|.+.|++|...
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~ 41 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTT 41 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEE
Confidence 578999999987654 467899999999998753
No 336
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=40.02 E-value=62 Score=27.43 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEE-eCHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIII-TSPEAGSVFLEA 120 (263)
Q Consensus 48 l~g~~ILitr~~~~-----~~~l~~~L~~~G~~v~~~p~~~~~~~~~~-~~l~~~l~~l~~~d~IiF-TS~~aV~~~~~~ 120 (263)
...++|.+...... .+.+.+.++++|.++.....+.... .+. ..+.+.. . ...|.|++ .+......+++.
T Consensus 137 ~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~~~~l~-~-~~~d~v~~~~~~~~a~~~~~~ 213 (368)
T 4eyg_A 137 NGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PDFAPFLQRMK-D-AKPDAMFVFVPAGQGGNFMKQ 213 (368)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CCCHHHHHHHH-H-HCCSEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CcHHHHHHHHH-h-cCCCEEEEeccchHHHHHHHH
Confidence 34567776654321 3567788889998876544333211 232 2333332 2 46788887 666667777888
Q ss_pred HHHcCCC--CcEEEEeCh-hHHHHHH
Q 024727 121 WKEAGTP--NVRIGVVGA-GTASIFE 143 (263)
Q Consensus 121 l~~~~~~--~~~i~aVG~-~Ta~~L~ 143 (263)
+.+.++. +++++..+. .+...++
T Consensus 214 ~~~~g~~~~~v~~~~~~~~~~~~~~~ 239 (368)
T 4eyg_A 214 FAERGLDKSGIKVIGPGDVMDDDLLN 239 (368)
T ss_dssp HHHTTGGGTTCEEEEETTTTCHHHHT
T ss_pred HHHcCCCcCCceEEecCcccCHHHHH
Confidence 8887764 267777653 3344444
No 337
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=39.60 E-value=46 Score=27.21 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=55.6
Q ss_pred CCCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (263)
Q Consensus 48 l~g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~ 120 (263)
...++|.+..+.. ..+-+.+.|+++|..+... +..... +.+.+.+.+.....+|+|+.++-...-..++.
T Consensus 120 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~a 196 (277)
T 3hs3_A 120 KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENN--PYISAQSALNKSNQFDAIITVNDLYAAEIIKE 196 (277)
T ss_dssp TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSC--HHHHHHHHHHTGGGCSEEECSSHHHHHHHHHH
T ss_pred hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCc--hHHHHHHHHcCCCCCCEEEECCHHHHHHHHHH
Confidence 3345777664432 2234667788899877654 222111 13455666654467899999998888888888
Q ss_pred HHHcCC---CCcEEEEeChh
Q 024727 121 WKEAGT---PNVRIGVVGAG 137 (263)
Q Consensus 121 l~~~~~---~~~~i~aVG~~ 137 (263)
+.+.+. +++.++..+..
T Consensus 197 l~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 197 AKRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp HHHTTCCTTTTCEEECSBCC
T ss_pred HHHcCCCCCCceEEEeeCCc
Confidence 888876 36777766543
No 338
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=39.48 E-value=32 Score=28.30 Aligned_cols=76 Identities=8% Similarity=-0.051 Sum_probs=44.1
Q ss_pred cCCCCCCCeEEEeCCC--CC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHH
Q 024727 44 ASASNSNPKVVVTRER--GK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFL 118 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~--~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~ 118 (263)
|+..+.|++||||-.. .+ ...+++.|.+.|++|+..- +. + ...+.+++.....+...++. +++..+++.++
T Consensus 3 mm~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~--r~-~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 3 HMGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTY--QN-D-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp --CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEE--SS-T-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEc--Cc-H-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHH
Confidence 3445789999999875 33 5689999999999876531 11 1 11122222221222222222 37788888888
Q ss_pred HHHHH
Q 024727 119 EAWKE 123 (263)
Q Consensus 119 ~~l~~ 123 (263)
+.+.+
T Consensus 79 ~~~~~ 83 (265)
T 1qsg_A 79 AELGK 83 (265)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76654
No 339
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=39.29 E-value=1.9e+02 Score=25.47 Aligned_cols=78 Identities=9% Similarity=0.034 Sum_probs=45.9
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------E-EeeeC---CCchHHHHHHh---cCCCccEEEEe
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------I-QHAQG---PDTDRLSSVLN---ADTIFDWIIIT 109 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~-----------~-~~~~~---~~~~~l~~~l~---~l~~~d~IiFT 109 (263)
-.+|+++|.........+.+..+++|++++.+-- . +..+. .|.+.+.+.+. ....+|.|+.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~ 82 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTL 82 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECC
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEEC
Confidence 3578899987766677888999999999876511 1 11111 12222222222 22568999887
Q ss_pred CHHHHHHHHHHHHHcC
Q 024727 110 SPEAGSVFLEAWKEAG 125 (263)
Q Consensus 110 S~~aV~~~~~~l~~~~ 125 (263)
+-..+.......+..+
T Consensus 83 ~e~~~~~~a~l~e~lg 98 (425)
T 3vot_A 83 FEPALPFTAKAAEALN 98 (425)
T ss_dssp CGGGHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHcC
Confidence 7766655444434333
No 340
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=39.11 E-value=61 Score=25.90 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred CcEEEEeChhHHHHHHH-hhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeE
Q 024727 128 NVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (263)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~ 206 (263)
+.+++|-| .|++.|++ . |+.+..+-+.. ++|++.+.+.+++..+.+
T Consensus 55 Gf~L~AT~-gTa~~L~e~~------Gl~v~~v~k~~------------------------eGG~pqI~d~I~~geIdl-- 101 (178)
T 1vmd_A 55 KHELYATG-TTGALLQEKL------GLKVHRLKSGP------------------------LGGDQQIGAMIAEGKIDV-- 101 (178)
T ss_dssp TSEEEECH-HHHHHHHHHH------CCCCEECSCGG------------------------GTHHHHHHHHHHTTSCCE--
T ss_pred CCEEEEch-HHHHHHHHHh------CceeEEEeecC------------------------CCCCchHHHHHHCCCccE--
Confidence 56888886 69999999 8 99875542211 013445555555443332
Q ss_pred Eeeecc----ccCCCChHHHHHHhCCCCEEEEeCHHHHHHHHHHhc
Q 024727 207 LNTYTT----EPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLI 248 (263)
Q Consensus 207 ~~vY~~----~~~~~~~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~ 248 (263)
++--.. .+...+...+.+..-..++=++|+..+++ ++++.+
T Consensus 102 VInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~-A~v~ai 146 (178)
T 1vmd_A 102 LIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTAD-FLISSP 146 (178)
T ss_dssp EEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHH-HHHHSG
T ss_pred EEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHH-HHHHHH
Confidence 221111 11122233344433466778899999999 887753
No 341
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=39.03 E-value=1.4e+02 Score=23.52 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCeEEEeCCCCC---hHHHHHHHHhCCCcEEEeceEEeeeCCCchH----HHHHHhcCCCcc--EEEEeCHHHHHHHHHH
Q 024727 50 NPKVVVTRERGK---NGKLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNADTIFD--WIIITSPEAGSVFLEA 120 (263)
Q Consensus 50 g~~ILitr~~~~---~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~----l~~~l~~l~~~d--~IiFTS~~aV~~~~~~ 120 (263)
+|+|.|-....+ .+.+.+.|++.|++|+.+-.+...+. |+.. +-+.+ .-+++| .+|+-|..++....+
T Consensus 20 ~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V-~~g~~d~GIliCGTGiG~sIaAN- 96 (169)
T 3ph3_A 20 HMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESV-DYPDFGLKVAEAV-KSGECDRGIVICGTGLGISIAAN- 96 (169)
T ss_dssp -CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHH-HTTSSSEEEEEESSSHHHHHHHT-
T ss_pred CCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCC-CHHHHHHHHHHHH-HcCCCCEEEEEcCCcHHHHHHhh-
Confidence 567888765433 45788888999999999987765543 3332 22333 224444 566667777655433
Q ss_pred HHHcCCCCcEEEE-eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 121 WKEAGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 121 l~~~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
..++++.+. --+.+|+..+++- .-++...+......+++..|.+
T Consensus 97 ----Kv~GIRAAlc~d~~sA~~aR~hN-----nANVL~lG~Rvig~~lA~~Iv~ 141 (169)
T 3ph3_A 97 ----KVPGIRAAVCTNSYMARMSREHN-----DANILALGERVVGLDLALDIVD 141 (169)
T ss_dssp ----TSTTCCEEECSSHHHHHHHHHTT-----CCSEEEEETTTSCHHHHHHHHH
T ss_pred ----cCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCHHHHHHHHH
Confidence 345777754 4678888888872 3445456777777777776654
No 342
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=38.98 E-value=89 Score=25.63 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC
Q 024727 110 SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA 189 (263)
Q Consensus 110 S~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~ 189 (263)
|+.+++..-+.+...+..++.++ .|.. +.+...- .....++..+.-.-.+.+.+++.+.....+|+++++..|...
T Consensus 113 s~~~~~~a~~~~~~~~l~~v~~~-~~d~--~~~~~~~-~~~~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~~ 188 (249)
T 3g89_A 113 TRKKVAFVERAIEVLGLKGARAL-WGRA--EVLAREA-GHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRV 188 (249)
T ss_dssp CHHHHHHHHHHHHHHTCSSEEEE-ECCH--HHHTTST-TTTTCEEEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECSCC
T ss_pred CHHHHHHHHHHHHHhCCCceEEE-ECcH--HHhhccc-ccCCCceEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 56666666666666666554443 3432 2221100 000034443332335667888888877778899999998755
Q ss_pred ch---hHHHHHHhCCCeeeEEeee
Q 024727 190 SN---EIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 190 ~~---~L~~~L~~~G~~v~~~~vY 210 (263)
.+ .+.+.++..|+.+.++.-|
T Consensus 189 ~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 189 EEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp HHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEe
Confidence 43 4556777889988777666
No 343
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=38.88 E-value=35 Score=28.28 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..++.|+++|||-...+ ...+++.|.+.|++|+.+
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 43 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAV 43 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 46789999999988654 467999999999998754
No 344
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=38.77 E-value=33 Score=28.22 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=48.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEA 120 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~ 120 (263)
+..+.|++||||....+ ...+++.|.+.|++|+..- +. .+..+.+...+...+ ...++. +++..+++.+++.
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~--r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTA--RD--VEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SC--HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE--CC--HHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 34577999999987654 4678999999999876431 10 001122222332221 122221 3678888888876
Q ss_pred HHHc-CCCCcEEEEeC
Q 024727 121 WKEA-GTPNVRIGVVG 135 (263)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (263)
+.+. +.-+.-|.+.|
T Consensus 100 ~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAG 115 (262)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 6543 22244444444
No 345
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=38.70 E-value=30 Score=27.02 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=39.4
Q ss_pred hhHHHHHHhCCCeeeEEeeeccccCCC----------ChHHHHHHhCCCCEEEEeCH-------HHHHHHHHHhcccc--
Q 024727 191 NEIEEGLSNRGFEVVRLNTYTTEPVHH----------VDQTVLKQALSIPVVAVASP-------SAVRSSWVNLISDT-- 251 (263)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~----------~~~~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~~~~-- 251 (263)
+.+.+.|++.|++|+.+.+++...... .+....+.+.+.|.|+|.|| ..++ .|++.+...
T Consensus 24 ~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk-~~ld~~~~~~~ 102 (200)
T 2a5l_A 24 RQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLK-YFLDGTSSLWL 102 (200)
T ss_dssp HHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHTCHHHHH
T ss_pred HHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHH-HHHHHHHHHhh
Confidence 345566677788777777766421110 00001233458899999886 4677 787766321
Q ss_pred --CCCCceEEEEC
Q 024727 252 --EQWSNSVACIA 262 (263)
Q Consensus 252 --~~~~~~i~~IG 262 (263)
.+.+.+++.++
T Consensus 103 ~~~l~~K~~~~~~ 115 (200)
T 2a5l_A 103 TGSLVGKPAAVFT 115 (200)
T ss_dssp HTTTTTCEEEEEE
T ss_pred ccccCCCEEEEEE
Confidence 13455665543
No 346
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=38.70 E-value=1.1e+02 Score=22.24 Aligned_cols=110 Identities=8% Similarity=0.019 Sum_probs=63.5
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeC----HHHHHHHHHHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITS----PEAGSVFLEAWKE 123 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~IiFTS----~~aV~~~~~~l~~ 123 (263)
+.+||+.-... ....+...|++.|+++.. . ..+.++....+.... .+|.|++-- .++.+. ++.+.+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~-----~--~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~-~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIID-----T--AADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITC-LSNIME 107 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEE-----E--ESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHH-HHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEE-----E--ECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHH-HHHHHh
Confidence 45899987654 346788889989876631 1 123333333343321 678888752 244443 344444
Q ss_pred cCCCCcEEEEe-Ch---hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 124 AGTPNVRIGVV-GA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 124 ~~~~~~~i~aV-G~---~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
.. .+++++++ +. .....+.+. |.. ++..+..+.+.|.+.+....
T Consensus 108 ~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 108 FD-KNARVIMISALGKEQLVKDCLIK------GAK-TFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HC-TTCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHTT
T ss_pred hC-CCCcEEEEeccCcHHHHHHHHHc------CCC-EEEeCCCCHHHHHHHHHHHh
Confidence 43 35556555 32 233344455 765 46777788999988876543
No 347
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=38.69 E-value=1.8e+02 Score=24.48 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=25.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.+.+++||||..... ...+.+.|.+.|.+|..+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 55 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGL 55 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 356899999987653 467888888899988765
No 348
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=38.51 E-value=2.1e+02 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=27.8
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 024727 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (263)
Q Consensus 47 ~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p 80 (263)
.+.+++|+|.-...-...+.+.+++.|++++.+.
T Consensus 21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3468899999876666789999999999988765
No 349
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=38.49 E-value=37 Score=27.17 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=34.7
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV 114 (263)
....+.+.|++.|+++...... + .|.+.+.+.+++. .++|.||.|-..++
T Consensus 50 n~~~L~~~L~~~G~~v~~~~iv---~-Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 50 SGPLVTELLTEAGFVVDGVVAV---E-ADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE---C-SCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEEEe---C-CCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 4467889999999887765433 2 3456666666543 57999998876664
No 350
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=38.48 E-value=70 Score=26.36 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChhH
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aVG~~T 138 (263)
-+.+.|+++|..+....++......+ .+.+.+.+.....+|+|+.++-...-..++.+.+.++ +++.++..+...
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLP 226 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSC
T ss_pred HHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCcc
Confidence 35667777776654322222211111 1335555644467888888887777777777777765 367777776543
No 351
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=38.47 E-value=35 Score=27.90 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=40.7
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~l 121 (263)
+..+.|+++|||-...+ ...+++.|.+.|++|...-. .. +..++....+ -....++. +++...++.+++.+
T Consensus 2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 2 VMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDL--KP--PAGEEPAAEL--GAAVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp --CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES--SC--C--------------CEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC--Ch--HHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHH
Confidence 35688999999988754 46799999999998765421 10 1111111111 01222222 36788888887766
Q ss_pred HH
Q 024727 122 KE 123 (263)
Q Consensus 122 ~~ 123 (263)
.+
T Consensus 76 ~~ 77 (257)
T 3tpc_A 76 KQ 77 (257)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 352
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=38.37 E-value=68 Score=26.70 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=33.9
Q ss_pred HHHHHHhCCC----eeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 193 IEEGLSNRGF----EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 193 L~~~L~~~G~----~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
+.+.|++.|. ++. +.++.+...........+.+ .++|.|++.+..+.. .+.+. ..+++++.+|
T Consensus 29 i~~~l~~~Gy~~g~~v~-l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~-~~~~~-----~~~iPvV~~~ 97 (302)
T 2qh8_A 29 LLDGLKAKGYEEGKNLE-FDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQ-ALVSA-----TKTIPIVFTA 97 (302)
T ss_dssp HHHHHHHTTCCBTTTEE-EEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHHHH-HHHHH-----CSSSCEEEEE
T ss_pred HHHHHHHcCCCCCCceE-EEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHHHH-HHHhc-----CCCcCEEEEe
Confidence 4566777876 443 33334332222111233333 589999998876555 44432 2467777664
No 353
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=38.28 E-value=35 Score=28.34 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=25.7
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.+...+.+++||||-...+ ...+++.|.+.|++|...
T Consensus 9 ~m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~ 46 (266)
T 3p19_A 9 QMGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLL 46 (266)
T ss_dssp ------CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3456688999999988654 467899999999988754
No 354
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=38.27 E-value=58 Score=25.26 Aligned_cols=69 Identities=22% Similarity=0.182 Sum_probs=43.2
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH--------HHHHHH
Q 024727 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--------FLEAWK 122 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~--------~~~~l~ 122 (263)
++|+|..-...-..+.+.|++.|+++..++. .+ .+..+|.||++-...-.. +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~--------~~-------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR--------VE-------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS--------GG-------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC--------hH-------HhccCCEEEECCCCchhhhhhhhccCHHHHHH
Confidence 4678776544556678999999998776542 11 246789999998743211 222222
Q ss_pred HcCCCCcEEEEeChh
Q 024727 123 EAGTPNVRIGVVGAG 137 (263)
Q Consensus 123 ~~~~~~~~i~aVG~~ 137 (263)
..+++++.|.-.
T Consensus 66 ---~~~~PilGIC~G 77 (186)
T 2ywj_A 66 ---NSNLPILGTCAG 77 (186)
T ss_dssp ---TCCCCEEEETHH
T ss_pred ---hcCCcEEEECHH
Confidence 236788777654
No 355
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=38.17 E-value=1.3e+02 Score=23.38 Aligned_cols=102 Identities=7% Similarity=0.060 Sum_probs=56.1
Q ss_pred cccccccCCCCCCCeEEEeCCCCCh----HHHHHHHHhCCCcEEEeceEE---ee------e-CCCchHHHHHHhc--CC
Q 024727 38 SSDATSASASNSNPKVVVTRERGKN----GKLIKALAKHRIDCLELPLIQ---HA------Q-GPDTDRLSSVLNA--DT 101 (263)
Q Consensus 38 ~~~~~~~~~~l~g~~ILitr~~~~~----~~l~~~L~~~G~~v~~~p~~~---~~------~-~~~~~~l~~~l~~--l~ 101 (263)
++||+-......+++|++.-...-. ....+.|+..|+++..+..-. +. . .++. .+.+ ..
T Consensus 11 ~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~-----~l~~~~~~ 85 (193)
T 1oi4_A 11 LESTSLYKKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDK-----SIDEVTPA 85 (193)
T ss_dssp CCTTCTTTTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCE-----EGGGCCGG
T ss_pred ccccceehhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCC-----ChHHCCcc
Confidence 4555555555557788887654322 235778889998887664321 00 0 0110 1112 24
Q ss_pred CccEEEEeCHHHHHHH------HHHHHHcCCCCcEEEEeChhHHHHHHHh
Q 024727 102 IFDWIIITSPEAGSVF------LEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (263)
Q Consensus 102 ~~d~IiFTS~~aV~~~------~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (263)
.||.|++....+.+.+ .+.+++....+.++++|.... ..|.+.
T Consensus 86 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~-~lLa~a 134 (193)
T 1oi4_A 86 EFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISA 134 (193)
T ss_dssp GCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHH
T ss_pred cCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHC
Confidence 7999999987554332 222222222367788877654 466666
No 356
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=38.16 E-value=60 Score=26.34 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=57.1
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 49 ~g~~ILitr~~~~-----~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
..++|.+...... ..-+.+.++++|..+.... +. ...+. +.+.+.+..-..+|+|+.++-.....+++
T Consensus 117 G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 193 (280)
T 3gyb_A 117 GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YL--GPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALG 193 (280)
T ss_dssp TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CC--SCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-cc--CCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHH
Confidence 3456777665432 3446677888888776432 11 11121 23455565556799999999988888888
Q ss_pred HHHHcCC---CCcEEEEeChhH
Q 024727 120 AWKEAGT---PNVRIGVVGAGT 138 (263)
Q Consensus 120 ~l~~~~~---~~~~i~aVG~~T 138 (263)
.+.+.++ +++.++..+..-
T Consensus 194 al~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 194 AARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHHTCCTTTTCEEEEESCCH
T ss_pred HHHHcCCCCCCeeEEEEECCch
Confidence 8888875 478888887544
No 357
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=38.11 E-value=1.2e+02 Score=25.66 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=50.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEee--eCCCchHHHHHHhcCCCccEEEEeCH----------HHHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSP----------EAGSV 116 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~--~~~~~~~l~~~l~~l~~~d~IiFTS~----------~aV~~ 116 (263)
.|.+|++..+.. ..+...++..|+++..+|+-... ...+.+.+++.+.. .+...|+++++ .-++.
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i~~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVFCNPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEEECCCCCCCcccCHHHHHH
Confidence 477899988764 34666778899999999885211 11355677777732 46788888887 55677
Q ss_pred HHHHHHHcC
Q 024727 117 FLEAWKEAG 125 (263)
Q Consensus 117 ~~~~l~~~~ 125 (263)
+.+.+++++
T Consensus 185 i~~~~~~~~ 193 (391)
T 3dzz_A 185 IAELCAKHQ 193 (391)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 777676543
No 358
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=38.08 E-value=29 Score=29.10 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=85.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~~ 120 (263)
.+|.||.+|||-...+ ...+++.|.+.|++|...-. .. +..+++.+.++..+ .+.+. .|+...++.+++.
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~--~~--~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL--LE--DRLNQIVQELRGMG-KEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEEC--CH--HHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHH
Confidence 4688999999987654 46799999999999875321 10 01123333343332 23333 3799999999887
Q ss_pred HHHc-CCCCcEEEEeC---------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCC-
Q 024727 121 WKEA-GTPNVRIGVVG---------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA- 189 (263)
Q Consensus 121 l~~~-~~~~~~i~aVG---------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~- 189 (263)
..+. +.-++-|-..| +.|.+.+++. +.+++...=......+..|.+. .+++|+.+.+..+
T Consensus 78 ~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS~~g~ 148 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERV-------LAVNLYSAFYSSRAVIPIMLKQ--GKGVIVNTASIAGI 148 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT
T ss_pred HHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEechhhc
Confidence 6553 21112121112 2234444443 2322222223344555555543 3578888876432
Q ss_pred -------------------chhHHHHHHhCCCeeeEEee
Q 024727 190 -------------------SNEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 190 -------------------~~~L~~~L~~~G~~v~~~~v 209 (263)
...|...|...|++|..+.-
T Consensus 149 ~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~P 187 (254)
T 4fn4_A 149 RGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLP 187 (254)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEe
Confidence 24577778889999987765
No 359
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=38.01 E-value=58 Score=26.81 Aligned_cols=74 Identities=14% Similarity=-0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-Cc----hHHHHHHhcCCCccE--EEEeCHHHHHHHHHHHHHcCCC--CcEEEE
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDW--IIITSPEAGSVFLEAWKEAGTP--NVRIGV 133 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~-~~----~~l~~~l~~l~~~d~--IiFTS~~aV~~~~~~l~~~~~~--~~~i~a 133 (263)
.-+.+.|+++|..- ..+....... +. +.+.+.+....+.+. |+..+-...-..++.+.+.+.. ++.++.
T Consensus 153 ~Gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG 230 (306)
T 8abp_A 153 TGSMDALKAAGFPE--KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHTCCG--GGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEE
Confidence 44677788877531 1122222211 11 234555654567787 6666666666778888888764 677777
Q ss_pred eChhH
Q 024727 134 VGAGT 138 (263)
Q Consensus 134 VG~~T 138 (263)
.+...
T Consensus 231 ~D~~~ 235 (306)
T 8abp_A 231 INGVD 235 (306)
T ss_dssp ESSGG
T ss_pred eCcHH
Confidence 65443
No 360
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=37.97 E-value=82 Score=25.81 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=41.7
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE
Q 024727 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI 106 (263)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~I 106 (263)
...++-|++. ...+++||||....+ ...+++.|.+.|++|...-.- .....+.+...+...+ .+..
T Consensus 13 ~~~~n~~~~~---------m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~---~~~~~~~~~~~~~~~~-~~~~ 79 (272)
T 4e3z_A 13 LGTENLYFQS---------MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAA---NREAADAVVAAITESG-GEAV 79 (272)
T ss_dssp --------------------CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTT-CEEE
T ss_pred CCChhhhhhh---------ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC---ChhHHHHHHHHHHhcC-CcEE
Confidence 3445556555 234789999987654 467999999999987532110 0001122233332221 2222
Q ss_pred E----EeCHHHHHHHHHHHHH
Q 024727 107 I----ITSPEAGSVFLEAWKE 123 (263)
Q Consensus 107 i----FTS~~aV~~~~~~l~~ 123 (263)
+ +++...++.+++.+.+
T Consensus 80 ~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 80 AIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp EEECCTTCHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHH
Confidence 2 3678888888877654
No 361
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.88 E-value=38 Score=28.08 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=54.4
Q ss_pred CCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 024727 50 NPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~ 118 (263)
.++|++..... +.+-+.+.|+++|.++.... ...+. +.+...+..-.+.|+|+..+-......+
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD-----VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLG 204 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE-----CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee-----cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHH
Confidence 45666654332 23447788888888776532 11121 2345556555678999999988888888
Q ss_pred HHHHHcCC----CCcEEEEeChh
Q 024727 119 EAWKEAGT----PNVRIGVVGAG 137 (263)
Q Consensus 119 ~~l~~~~~----~~~~i~aVG~~ 137 (263)
+.+++.+. +++.++..+..
T Consensus 205 ~al~~~g~~vP~~dv~vig~D~~ 227 (297)
T 3rot_A 205 QMLLHPDRYDFNYQPQVYSFDKT 227 (297)
T ss_dssp HHHHSHHHHTCCCCCEEEEECCC
T ss_pred HHHHhcCCccCCCceEEEEeCCC
Confidence 88887764 37888888764
No 362
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=37.87 E-value=37 Score=28.89 Aligned_cols=156 Identities=8% Similarity=0.061 Sum_probs=83.7
Q ss_pred ChHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHH
Q 024727 61 KNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (263)
Q Consensus 61 ~~~~l~-~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (263)
.+..+- ..+++.|.+..+.|+ ++.+ .+.++.-+.+.. .++..+-.|-|.=.+.+ .++.+ +.+ .+
T Consensus 14 ~SP~~hn~~f~~~gl~~~Y~~~-~v~~-~~l~~~~~~~~~-~~~~G~nVTiP~K~~v~-~~~d~----------l~~-~A 78 (277)
T 3don_A 14 LSPLMHHANFQSLNLENTYEAI-NVPV-NQFQDIKKIISE-KSIDGFNVTIPHKERII-PYLDD----------INE-QA 78 (277)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEE-ECCG-GGGGGHHHHHHH-TTCSEEEECTTCTTTTG-GGCSE----------ECH-HH
T ss_pred ccHHHHHHHHHHcCcCcEEEEE-EcCH-HHHHHHHHHHhh-CCCCEEEECcCCHHHHH-HHhhh----------CCH-HH
Confidence 344444 566888998776664 2221 222333333433 36889999988644332 11111 111 11
Q ss_pred HHHHHhhhhcCCCCce------eecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeec
Q 024727 140 SIFEEVIQSSKCSLDV------AFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 140 ~~L~~~~~~~~~G~~~------~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (263)
+.+-. ++. .+...+-|..+++..|.+.. ..+++++++.+.+....+...|.+.|+. ++.+|.
T Consensus 79 ~~iGA--------VNTv~~~~g~l~G~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~--~v~v~~ 148 (277)
T 3don_A 79 KSVGA--------VNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRP--TLTVAN 148 (277)
T ss_dssp HHHTC--------CCEEEEETTEEEEECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCS--CCEEEC
T ss_pred HHhCc--------eeEEEecCCEEEEECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEe
Confidence 11111 111 12334557788888887543 3578999998776667788889999872 244555
Q ss_pred cccCCC----------ChHHHHHHhCCCCEEEEeCHHHHH
Q 024727 212 TEPVHH----------VDQTVLKQALSIPVVAVASPSAVR 241 (263)
Q Consensus 212 ~~~~~~----------~~~~~~~~l~~~d~vvFtS~s~v~ 241 (263)
+....- ..+++.+.+.+.|+|+-+.|....
T Consensus 149 R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~ 188 (277)
T 3don_A 149 RTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMN 188 (277)
T ss_dssp SCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC----
T ss_pred CCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCC
Confidence 443211 112233334689999999887654
No 363
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=37.85 E-value=1e+02 Score=21.66 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=61.1
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC------HHHHHHHHHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS------PEAGSVFLEAWK 122 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS------~~aV~~~~~~l~ 122 (263)
..+||+.-... ....+...|++.|+++... .+.++....+ ....+|.|+.-- .++.+. ++.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~D~~l~~~~~~g~~~-~~~l~ 75 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCF--------ASAESFMRQQ-ISDDAIGMIIEAHLEDKKDSGIEL-LETLV 75 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEE--------SSHHHHTTSC-CCTTEEEEEEETTGGGBTTHHHHH-HHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-hccCCCEEEEeCcCCCCCccHHHH-HHHHH
Confidence 46899886654 3456888888888765432 1222211122 124688887753 345543 44455
Q ss_pred HcCCCCcEEEEe-ChhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 123 EAGTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 123 ~~~~~~~~i~aV-G~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
+.. .+.+++++ |.... ....+. |.. ++..+..+.+.|...+.+.
T Consensus 76 ~~~-~~~~ii~~s~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 76 KRG-FHLPTIVMASSSDIPTAVRAMRA------SAA-DFIEKPFIEHVLVHDVQQI 123 (136)
T ss_dssp HTT-CCCCEEEEESSCCHHHHHHHHHT------TCS-EEEESSBCHHHHHHHHHHH
T ss_pred hCC-CCCCEEEEEcCCCHHHHHHHHHc------ChH-HheeCCCCHHHHHHHHHHH
Confidence 543 45666655 43332 333445 765 4677778999998877654
No 364
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=37.81 E-value=47 Score=29.33 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCeEEEeCC--CCChHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHH
Q 024727 50 NPKVVVTRE--RGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSV 116 (263)
Q Consensus 50 g~~ILitr~--~~~~~~l----~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~ 116 (263)
.++|++.-. ....+.+ .+.+++.|+++..+.+-+. + +......+.++|.|||-|| ..++.
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~----~---~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS----D---ITKVALHTYDSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC----C---HHHHHHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC----C---HHHHHHHHHhCCEEEEEcCccCcCchHHHHH
Confidence 356655432 2233444 4445556776654433211 1 1222234568999999986 46888
Q ss_pred HHHHHHHcCC-CCcEEEEeC
Q 024727 117 FLEAWKEAGT-PNVRIGVVG 135 (263)
Q Consensus 117 ~~~~l~~~~~-~~~~i~aVG 135 (263)
|++.+..... .+++++++|
T Consensus 329 fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 329 ALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHhhcccCCCEEEEEE
Confidence 8888765444 556666554
No 365
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=37.50 E-value=1e+02 Score=28.53 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=72.3
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~-----------~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
++|+|.....-...+++.|.+.|.++..+.. +.-.+ .+.+.++++ .+.++|.+|.+..+--.+.+-
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~-t~~~~L~~a--gi~~ad~vi~~~~~d~~ni~~ 425 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDA-TVGQTLRQA--GIDRASGIIVTTNDDSTNIFL 425 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCS-SSSTHHHHH--TTTSCSEEEECCSCHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCC-CCHHHHHhc--CccccCEEEEECCCchHHHHH
Confidence 6777777665677899999999988775531 11111 122333332 578999999988876655544
Q ss_pred HHH--HcCCCCcEEEE--eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhc
Q 024727 120 AWK--EAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (263)
Q Consensus 120 ~l~--~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (263)
.+. +.+. +.++++ -.+...+.|++. |.+..+.|+...++.+++.+.
T Consensus 426 ~~~ak~l~~-~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~~~~i~~~~~ 475 (565)
T 4gx0_A 426 TLACRHLHS-HIRIVARANGEENVDQLYAA------GADFVVSNASVGANILGNLLE 475 (565)
T ss_dssp HHHHHHHCS-SSEEEEEESSTTSHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEccchHHHHHHHHHhc
Confidence 332 3332 445554 467778889998 998877787666677766654
No 366
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=37.40 E-value=63 Score=28.02 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=25.2
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCC-cEE
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCL 77 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~-~v~ 77 (263)
..+.|++++|+-...-.......|.+.|+ ++.
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~ 182 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVKEIS 182 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCCEEE
Confidence 46789999999875555678889999998 454
No 367
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=37.37 E-value=40 Score=27.89 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=46.4
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHH
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVF 117 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~ 117 (263)
.....+.|+++|||-...+ ...+++.|.+.|++|...-. ......+.+.+.+...+ .+..+ +++...++.+
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~ 86 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA---NSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKL 86 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHH
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHH
Confidence 3446789999999987654 46789999999998874211 00001122333333322 22322 3678888888
Q ss_pred HHHHHH
Q 024727 118 LEAWKE 123 (263)
Q Consensus 118 ~~~l~~ 123 (263)
++.+.+
T Consensus 87 ~~~~~~ 92 (270)
T 3is3_A 87 FDQAVA 92 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 368
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=37.10 E-value=82 Score=26.00 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=34.1
Q ss_pred HHHHHHhCCC---eeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHHHHHHHHHhccccCCCCceEEEEC
Q 024727 193 IEEGLSNRGF---EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 193 L~~~L~~~G~---~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
+.+.|++.|. ++. +.++.+...........+.+ .++|.|++.+..+.+ .+.+. ..+++++.+|
T Consensus 23 i~~~l~~~gy~g~~v~-l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~-~~~~~-----~~~iPvV~~~ 90 (295)
T 3lft_A 23 IQDGLAEEGYKDDQVK-IDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQ-GLASA-----TKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHTTCCGGGEE-EEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHHHHH-HHHHH-----CSSSCEEEES
T ss_pred HHHHHHHcCCCCCceE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcHHHH-HHHHc-----CCCCCEEEEe
Confidence 5566778887 543 22333332221112233333 489999998876555 44332 2467777765
No 369
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.97 E-value=32 Score=27.87 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=48.4
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCC-CccEEEEeCHHHHHHH
Q 024727 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADT-IFDWIIITSPEAGSVF 117 (263)
Q Consensus 50 g~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~-~~d~IiFTS~~aV~~~ 117 (263)
.++|++..+... .+-+.+.++++|..+..+ + ....+. +.+.+.+..-. .+|+|+..+-......
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~ 195 (272)
T 3o74_A 120 PRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRY--Q--GEAFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQGV 195 (272)
T ss_dssp CSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEE--E--ESSSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHH
T ss_pred CcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhee--e--cCCCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHH
Confidence 356776643321 234555666777543221 1 111121 23455554434 6888888888877778
Q ss_pred HHHHHHcCC--CCcEEEEeChh
Q 024727 118 LEAWKEAGT--PNVRIGVVGAG 137 (263)
Q Consensus 118 ~~~l~~~~~--~~~~i~aVG~~ 137 (263)
++.+.+.++ +++.++..+..
T Consensus 196 ~~al~~~g~vp~di~vvg~d~~ 217 (272)
T 3o74_A 196 FDTLQARPVDSRQLQLGTFGDN 217 (272)
T ss_dssp HHHHHTSCGGGCCCEEEEESCC
T ss_pred HHHHHHcCCCccceEEEEeCCh
Confidence 888888774 56777777654
No 370
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=36.79 E-value=1.1e+02 Score=21.57 Aligned_cols=109 Identities=9% Similarity=0.035 Sum_probs=61.2
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHhc-----CCCccEEEEeC----HHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNA-----DTIFDWIIITS----PEAGSV 116 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G~--~v~~~p~~~~~~~~~~~~l~~~l~~-----l~~~d~IiFTS----~~aV~~ 116 (263)
.+.+||+.-... ....+...|++.|. .+... .+.++....+.. -..+|.|++-- .++.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~- 76 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIA--------KSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIE- 76 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEE--------SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHH-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEE--------CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHH-
Confidence 356788886654 34678888888887 44322 233333444433 15689988763 23443
Q ss_pred HHHHHHHcC-CCCcEEEEeCh-hHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 117 FLEAWKEAG-TPNVRIGVVGA-GTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 117 ~~~~l~~~~-~~~~~i~aVG~-~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+++.+.+.. ..+++++++.. .+. ..+.+. |.. ++..+..+.+.|.+.+..
T Consensus 77 ~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 77 FLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESL------NIR-GHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTT------TCC-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhc------CCC-eEEECCCCHHHHHHHHHH
Confidence 334444322 14677766633 222 223334 655 466777888888877653
No 371
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=36.79 E-value=51 Score=27.35 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=54.5
Q ss_pred CCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHH-----HhcCCCccEEEEeCHHHH
Q 024727 49 SNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSV-----LNADTIFDWIIITSPEAG 114 (263)
Q Consensus 49 ~g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~-----l~~l~~~d~IiFTS~~aV 114 (263)
..++|.+..+.. ..+-+.+.|+++|..+....++......+ .+.+.+. +.....+|+|+.++-...
T Consensus 130 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A 209 (303)
T 3kke_A 130 GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAA 209 (303)
T ss_dssp TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHH
T ss_pred CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHH
Confidence 345676654332 23346677888887664322222211111 1234555 544457899999998888
Q ss_pred HHHHHHHHHcCC---CCcEEEEeChhH
Q 024727 115 SVFLEAWKEAGT---PNVRIGVVGAGT 138 (263)
Q Consensus 115 ~~~~~~l~~~~~---~~~~i~aVG~~T 138 (263)
-..++.+.+.++ +++.++..+...
T Consensus 210 ~g~~~al~~~G~~vP~di~vig~D~~~ 236 (303)
T 3kke_A 210 VGALSTALRLGLRVPEDLSIVGINTTW 236 (303)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHcCCCCCCceEEEEEcChh
Confidence 788888888875 478888887653
No 372
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=36.77 E-value=59 Score=25.55 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCH-------HHHHHHHHHhc
Q 024727 200 RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (263)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~ 248 (263)
...+|+...+|+ ..+.++..+.+...|.|+|.+| ..++ .|++.+
T Consensus 27 ~~~~v~v~dL~~----~~D~~~~~~~l~~aD~iV~~~P~y~~~~pa~lK-~~iDrv 77 (177)
T 3ha2_A 27 NFSNVTWHPLVA----DFNVEQEQSLLLQNDRIILEFPLYWYSAPALLK-QWMDTV 77 (177)
T ss_dssp TCTTEEEEECCT----TCCHHHHHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred cCCCEEEEECCC----cccHHHHHHHHHhCCEEEEECChhhccCCHHHH-HHHHHH
Confidence 345788888888 3344445555679999999875 6778 888764
No 373
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=36.60 E-value=78 Score=30.84 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=51.1
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhH
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~T 138 (263)
.-.+|.+.|++.|++|+.. .+.++....+++...+++||++--..-..+++.+.+.+ .+++|+.++...
T Consensus 18 ~i~~L~~~Le~~g~~V~~a--------~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~~-~~iPVFl~~~~~ 86 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYP--------NDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMN-ENLPLYAFANTY 86 (715)
T ss_dssp HHHHHHHHHHHTTCEEECC--------SSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHHC-TTCEEEEECCTT
T ss_pred HHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 4568899999999998633 34455566666667899999998766667777777665 478898887763
No 374
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=36.46 E-value=1.1e+02 Score=21.57 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~l~~~ 124 (263)
..+||+.-... ....+...|++.|+.+... .+..+....+.. ..+|.|+.- ..++.+. ++.+.+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~D~~l~~~~g~~~-~~~l~~~ 72 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITA--------FSGEECLEALNA-TPPDLVLLDIMMEPMDGWET-LERIKTD 72 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHH-HHHHHHS
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHH-HHHHHcC
Confidence 35788886553 3456788888888765421 232333333433 468888864 2345543 4445543
Q ss_pred C-CCCcEEEEeCh--hHHHHHHHhhhhcCCCCc-eeecCCCCCHHHHHHHhccC
Q 024727 125 G-TPNVRIGVVGA--GTASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKN 174 (263)
Q Consensus 125 ~-~~~~~i~aVG~--~Ta~~L~~~~~~~~~G~~-~~~~p~~~t~e~L~~~l~~~ 174 (263)
. ..+++++.+.. ......... |.. .++..+..+.+.|...+...
T Consensus 73 ~~~~~~~ii~ls~~~~~~~~~~~~------~~~~~~~l~KP~~~~~L~~~i~~~ 120 (138)
T 3c3m_A 73 PATRDIPVLMLTAKPLTPEEANEY------GSYIEDYILKPTTHHQLYEAIEHV 120 (138)
T ss_dssp TTTTTSCEEEEESSCCCHHHHHHT------TTTCSEEEECCCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCChHHHHHHh------hcCHhheEeCCCCHHHHHHHHHHH
Confidence 2 23566665532 233444444 542 25677778888888777654
No 375
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=36.29 E-value=40 Score=26.80 Aligned_cols=47 Identities=19% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHhccCCCCCcEEEEEcC--CCCchhHHHHHHhCCCeeeEEeeec
Q 024727 165 KILASELPKNGKKKCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNTYT 211 (263)
Q Consensus 165 e~L~~~l~~~~~~~~~vL~~~g--~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (263)
+.+++.+.+...+|+.+++... ....+.+.+.|++.|+.+..+..+.
T Consensus 159 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 207 (230)
T 3evz_A 159 VKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKV 207 (230)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecC
Confidence 5666777776667788777443 3345778889999999887776644
No 376
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=36.26 E-value=1e+02 Score=26.87 Aligned_cols=36 Identities=6% Similarity=-0.040 Sum_probs=28.9
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEece
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPL 81 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~ 81 (263)
..+.|++|+|.-...-...+.+.+++.|++++.+..
T Consensus 8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~ 43 (377)
T 3orq_A 8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDP 43 (377)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 346789999997765667899999999999887643
No 377
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=36.24 E-value=34 Score=28.10 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeCh
Q 024727 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
+++.+.....+|+|+..+-.....+++.+.+.+++++.++..+.
T Consensus 182 ~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d~ 225 (290)
T 2fn9_A 182 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDG 225 (290)
T ss_dssp HHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBC
T ss_pred HHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeCC
Confidence 45555444568999988887777788888887775666766654
No 378
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=36.15 E-value=50 Score=27.61 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe--------CHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT--------SPEAGSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT--------S~~aV~~~~~~l~~~~~~~~~i~aVG 135 (263)
.+.+.|++.|++|....+-+.....+ .+ .+.+||.|||. +...++.|.+++.. +..++++-
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~~~~~~----~~---~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~----GgG~vgiH 104 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEPEHGLT----DE---VLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE----GMGLIVLH 104 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCC----HH---HHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT----TCEEEEEG
T ss_pred HHHHHHhhCCcEEEEEeccCccccCC----Hh---HHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc----CCCEEEEc
Confidence 45888999998887643211111111 11 24789999993 46666777766653 56777774
Q ss_pred hh
Q 024727 136 AG 137 (263)
Q Consensus 136 ~~ 137 (263)
.+
T Consensus 105 ~a 106 (252)
T 1t0b_A 105 SG 106 (252)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 379
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=36.12 E-value=67 Score=23.21 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=41.1
Q ss_pred CcEEEEEcCCCCc-----hhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCHHHHHHHHHHhcccc-
Q 024727 178 KCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDT- 251 (263)
Q Consensus 178 ~~~vL~~~g~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~~~~- 251 (263)
..+|+++|+.+.. ..+.+..+++|+++.-..+=... ... .+.++|+|+. +|. ++ +.++.+++.
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~-~~~-------~~~~~DvvLL-gPQ-V~-y~~~~ik~~~ 74 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HYD-------IMGVYDLIIL-APQ-VR-SYYREMKVDA 74 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS-CTT-------TGGGCSEEEE-CGG-GG-GGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH-HHh-------hccCCCEEEE-ChH-HH-HHHHHHHHHh
Confidence 4689999988864 34556666788776544321111 111 1246887666 553 44 444444332
Q ss_pred CCCCceEEEEC
Q 024727 252 EQWSNSVACIA 262 (263)
Q Consensus 252 ~~~~~~i~~IG 262 (263)
...+++|.+|.
T Consensus 75 ~~~~ipV~vI~ 85 (108)
T 3nbm_A 75 ERLGIQIVATR 85 (108)
T ss_dssp TTTTCEEEECC
T ss_pred hhcCCcEEEeC
Confidence 12478888875
No 380
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=35.95 E-value=47 Score=27.89 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=28.8
Q ss_pred cccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 42 ~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.++...+.|++||||..... ...+.+.|.+.|++|..+
T Consensus 3 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 41 (342)
T 1y1p_A 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGT 41 (342)
T ss_dssp STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 34556678999999987653 467888888899988753
No 381
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.93 E-value=1.2e+02 Score=21.83 Aligned_cols=110 Identities=9% Similarity=0.071 Sum_probs=64.3
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (263)
Q Consensus 47 ~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l 121 (263)
...+.+|||.-... ....+...|++.|+++... .+.++....+.. ..+|.|++-- .++.+.+ +.+
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~-~~l 80 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLAS-REVDLVISAAHLPQMDGPTLL-ARI 80 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHH-HHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHHHH-HHH
Confidence 34467899987654 3467888888888655422 233333344433 5689988753 2344433 334
Q ss_pred HHcCCCCcEEEEeCh-hHH---HHHHHhhhhcCCC-CceeecCCCCCHHHHHHHhccC
Q 024727 122 KEAGTPNVRIGVVGA-GTA---SIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 122 ~~~~~~~~~i~aVG~-~Ta---~~L~~~~~~~~~G-~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
.+.. .+++++++.. ... ..+.+. | .. ++..+..+.+.|...+...
T Consensus 81 ~~~~-~~~~ii~~s~~~~~~~~~~~~~~------g~~~-~~l~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 81 HQQY-PSTTRILLTGDPDLKLIAKAINE------GEIY-RYLSKPWDDQELLLALRQA 130 (153)
T ss_dssp HHHC-TTSEEEEECCCCCHHHHHHHHHT------TCCS-EEECSSCCHHHHHHHHHHH
T ss_pred HhHC-CCCeEEEEECCCCHHHHHHHHhC------CCcc-eEEeCCCCHHHHHHHHHHH
Confidence 4433 3567766643 222 233344 6 54 4777778899998777643
No 382
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=35.74 E-value=60 Score=27.06 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=32.1
Q ss_pred EEEEEc--CCCCchhHHHHHHhC-CCeeeEEeeeccccCCCChHHHHHHhCCCCEEE-EeCHHHHHHHHHHhc
Q 024727 180 TVLYPA--SAKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSSWVNLI 248 (263)
Q Consensus 180 ~vL~~~--g~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vv-FtS~s~v~~~~~~~~ 248 (263)
||.+.. |.-++. +.+.+.+. |+++ +.++++. .+.+++.. ..+|+++ ||+|.++. ..++.+
T Consensus 2 kV~V~Ga~G~mG~~-i~~~~~~~~~~el--va~~d~~---~dl~~~~~--~~~DvvIDfT~p~a~~-~~~~~a 65 (245)
T 1p9l_A 2 RVGVLGAKGKVGTT-MVRAVAAADDLTL--SAELDAG---DPLSLLTD--GNTEVVIDFTHPDVVM-GNLEFL 65 (245)
T ss_dssp EEEEETTTSHHHHH-HHHHHHHCTTCEE--EEEECTT---CCTHHHHH--TTCCEEEECSCTTTHH-HHHHHH
T ss_pred EEEEECCCCHHHHH-HHHHHHhCCCCEE--EEEEccC---CCHHHHhc--cCCcEEEEccChHHHH-HHHHHH
Confidence 455554 333444 44445433 6655 3444432 22223332 3788888 88888887 666554
No 383
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=35.60 E-value=25 Score=32.66 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH-HHcCCCCcEEEEeC-hhHHH
Q 024727 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW-KEAGTPNVRIGVVG-AGTAS 140 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l-~~~~~~~~~i~aVG-~~Ta~ 140 (263)
.++.+.|++.|+++...-.-....-+ +.++.+.+.-+..++..-....+.+ ++.+.+-+...-+| ..|.+
T Consensus 186 ~eik~lL~~~Gi~v~~~~~gg~~~~e--------i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~PiG~~~T~~ 257 (511)
T 2xdq_B 186 RELKQLMADLGIQVNLVIPAAATVHD--------LQRLPQAWFNLVPYREIGGLTAQYLEREFGQPSVRITPMGVVETAR 257 (511)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCCTTT--------GGGGGGSSEEECCCTTSSHHHHHHHHHHHCCCEECCCCCSHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEECCcCcHHH--------HHhhccCCEEEEEchhhhHHHHHHHHHHhCCCeEeecccCHHHHHH
Q ss_pred HHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC--------------CCCCcEEEEEcCCCCchhHHHHH-HhCCCeee
Q 024727 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------------GKKKCTVLYPASAKASNEIEEGL-SNRGFEVV 205 (263)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~--------------~~~~~~vL~~~g~~~~~~L~~~L-~~~G~~v~ 205 (263)
.|++. +-......-....+.+++.=.+. ...|+++++..+....--+...| .+.|+++.
T Consensus 258 ~L~~i------a~~~g~~~~~~~~e~~i~~~~~~~~~~~~~~~~~d~~~l~Gkrv~i~gd~~~~~~l~~~L~~elGm~vv 331 (511)
T 2xdq_B 258 CIRAI------QGVLNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGIHVV 331 (511)
T ss_dssp HHHHH------HHHHHTTTCCCCCHHHHHHHHHHTCCHHHHHHSHHHHTTTTCEEEEEECHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHH------HHHhCCCcCCCChHHHHHHHHhhhhhHHHHHHHhHHHhccCCEEEEEcCChHHHHHHHHHHHhCCCEEE
Q ss_pred EEeeeccccCCCChHHHHHHhCCCCEEEEeCHHHHHHHHHHhcccc
Q 024727 206 RLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDT 251 (263)
Q Consensus 206 ~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~~~~ 251 (263)
.+-.|.....+...+.+.+ ...++++......++ .+++..+.+
T Consensus 332 ~~gt~~~~~~~~~~~~l~~--~~~~v~~~~D~~el~-~~i~~~~pD 374 (511)
T 2xdq_B 332 WAGTYCKYDADWFRAEVAG--FCDEVLITDDHTVVG-DAIARVEPA 374 (511)
T ss_dssp EEEESCGGGHHHHHHHHTT--TSSEEEECCCHHHHH-HHHHHHCCS
T ss_pred EeecCCCCchHHHHHHHHh--cCCcEEEeCCHHHHH-HHHHhcCCC
No 384
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=35.59 E-value=1.9e+02 Score=23.93 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCC-----CchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCH-----HHHHHHH
Q 024727 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSSW 244 (263)
Q Consensus 177 ~~~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~-----s~v~~~~ 244 (263)
.+.+|++.+..+ +...+...|+..|++|..+-.= .+ .+++.+.. .++|+|.+++. ..++ .+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp----~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~-~~ 194 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VP----AEEVLAAVQKEKPIMLTGTALMTTTMYAFK-EV 194 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CC----SHHHHHHHHHHCCSEEEEECCCTTTTTHHH-HH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CC----HHHHHHHHHHcCCCEEEEEeeccCCHHHHH-HH
Confidence 356888877653 4577788999999988766651 22 23343333 38999999883 2344 55
Q ss_pred HHhccccCCCCceEEEECC
Q 024727 245 VNLISDTEQWSNSVACIAG 263 (263)
Q Consensus 245 ~~~~~~~~~~~~~i~~IGp 263 (263)
.+.+++. ..+++|++=|+
T Consensus 195 i~~l~~~-~~~~~v~vGG~ 212 (258)
T 2i2x_B 195 NDMLLEN-GIKIPFACGGG 212 (258)
T ss_dssp HHHHHTT-TCCCCEEEEST
T ss_pred HHHHHhc-CCCCcEEEECc
Confidence 5555443 23478877663
No 385
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=35.51 E-value=43 Score=27.26 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=43.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~l 121 (263)
..+.|++||||-...+ ...+++.|.+.|++|...-. .+ .+.++..++..+ +..++. +++..+++.+++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r-----~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADL-----VP-APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQV 76 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-----SC-CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC-----Cc-hhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 4578999999987654 46799999999998764311 11 122333333322 222221 36788888877765
Q ss_pred HH
Q 024727 122 KE 123 (263)
Q Consensus 122 ~~ 123 (263)
.+
T Consensus 77 ~~ 78 (249)
T 2ew8_A 77 IS 78 (249)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 386
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=35.38 E-value=42 Score=27.67 Aligned_cols=73 Identities=4% Similarity=-0.053 Sum_probs=44.1
Q ss_pred CCCCCCCeEEEeCC--CC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHH
Q 024727 45 SASNSNPKVVVTRE--RG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFL 118 (263)
Q Consensus 45 ~~~l~g~~ILitr~--~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~ 118 (263)
+..+.|++||||-. .. -...+++.|.+.|++|+..- ......++...+.++ ...++. +++...++.++
T Consensus 2 m~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~------r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (269)
T 2h7i_A 2 TGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTG------FDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLA 75 (269)
T ss_dssp CCTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEE------CSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEe------cChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHH
Confidence 34578999999986 33 35789999999999876431 111111233332222 223322 37788888888
Q ss_pred HHHHH
Q 024727 119 EAWKE 123 (263)
Q Consensus 119 ~~l~~ 123 (263)
+.+.+
T Consensus 76 ~~~~~ 80 (269)
T 2h7i_A 76 GRVTE 80 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 387
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=35.32 E-value=47 Score=26.93 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=26.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+.|++||||-...+ ...+.+.|.+.|++|...
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 37 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAAC 37 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5678999999987654 467899999999887643
No 388
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=35.23 E-value=2e+02 Score=24.21 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=47.4
Q ss_pred CHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-C-CCCEEEEeCH---
Q 024727 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP--- 237 (263)
Q Consensus 163 t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~-~~d~vvFtS~--- 237 (263)
..+++.-.+.....+|++|++....-.. ....++..|+++..+++...- ..+.+++.+.+ . +..+|+++++
T Consensus 94 ~t~a~~~~~~~~~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~--~~d~~~l~~~l~~~~~~~v~~~~~~np 169 (367)
T 3euc_A 94 SDEIISMLALAAARPGAKVMAPVPGFVM--YAMSAQFAGLEFVGVPLRADF--TLDRGAMLAAMAEHQPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEESCSCC--SCHHHHTTTCEEEEEECCTTS--CCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCCCHHH--HHHHHHHcCCeEEEecCCCCC--CCCHHHHHHHhhccCCCEEEEcCCCCC
Confidence 3344433333333467788887765543 334567788888877765421 12334444444 2 6777887655
Q ss_pred -------HHHHHHHHHhcccc
Q 024727 238 -------SAVRSSWVNLISDT 251 (263)
Q Consensus 238 -------s~v~~~~~~~~~~~ 251 (263)
..++ .+.+.++++
T Consensus 170 tG~~~~~~~l~-~i~~~~~~~ 189 (367)
T 3euc_A 170 TGNLFDAADME-AIVRAAQGS 189 (367)
T ss_dssp TCCCCCHHHHH-HHHHHTBTT
T ss_pred CCCCCCHHHHH-HHHHhhhhc
Confidence 3466 676666543
No 389
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=35.15 E-value=1.1e+02 Score=21.54 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=61.7
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~ 120 (263)
-+..+.+||+.-... ....+...|++.|+++... .+..+....+.....+|.++.-- .++.+ +++.
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~-~~~~ 81 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVH--------PSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFS-LLDI 81 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHTGGGGGSCSEEEEETTCTTSCHHH-HHHH
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEe--------CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-HHHH
Confidence 445678899987654 3467888888888754321 23333333332214689888652 23443 3444
Q ss_pred HHHcCCCCcEEEEeC-hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 121 WKEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 121 l~~~~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
+.+. ..+++++.+. ....... .. .+..++..+..+.+.|...+....
T Consensus 82 l~~~-~~~~~ii~ls~~~~~~~~-~~------~~~~~~l~KP~~~~~L~~~i~~~~ 129 (138)
T 2b4a_A 82 VKEQ-TKQPSVLILTTGRHELIE-SS------EHNLSYLQKPFAISELRAAIDYHK 129 (138)
T ss_dssp HTTS-SSCCEEEEEESCC--CCC-CS------SSCEEEEESSCCHHHHHHHHHHTC
T ss_pred HHhh-CCCCCEEEEECCCCCHHH-HH------HHHHheeeCCCCHHHHHHHHHHHH
Confidence 4442 2467777774 4332222 22 233346667788999988887654
No 390
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.13 E-value=1.2e+02 Score=21.69 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (263)
Q Consensus 47 ~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l 121 (263)
.-.+++||+.-... ..+.+...|++.|.. +.+....+.++....+ ....+|.|++-- .++.+ +++.+
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~------~~v~~~~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~l 88 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDV------ESVLQAKNGQEAIQLL-EKESVDIAILDVEMPVKTGLE-VLEWI 88 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTE------EEEEEESSHHHHHHHH-TTSCCSEEEECSSCSSSCHHH-HHHHH
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCc------EEEEEECCHHHHHHHh-hccCCCEEEEeCCCCCCcHHH-HHHHH
Confidence 34456899986654 345677788777621 2222223444444445 235689888753 23444 33445
Q ss_pred HHcCCCCcEEEEeC-hh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 122 KEAGTPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 122 ~~~~~~~~~i~aVG-~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
.+.. .+++++++. .. ....+.+. |.. ++..+..+.+.|.+.+....
T Consensus 89 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 89 RSEK-LETKVVVVTTFKRAGYFERAVKA------GVD-AYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp HHTT-CSCEEEEEESCCCHHHHHHHHHT------TCS-EEEETTSCHHHHHHHHHHHH
T ss_pred HHhC-CCCeEEEEeCCCCHHHHHHHHHC------CCc-EEEecCCCHHHHHHHHHHHH
Confidence 5443 456666653 32 23334455 765 47777789999988887654
No 391
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=35.03 E-value=1.6e+02 Score=24.84 Aligned_cols=60 Identities=13% Similarity=-0.028 Sum_probs=33.9
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-C-CCCEEEEeCH
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~-~~d~vvFtS~ 237 (263)
.+|++|++.....-.......++..|.++..+++-... ..+.+++.+.+ . +..+|+++++
T Consensus 96 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~~v~~~~~ 157 (393)
T 3kgw_A 96 EPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGE--HYTLQEVEEGLAQHKPVLLFLVHG 157 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCC--CCCHHHHHHHHhhCCCcEEEEecc
Confidence 45678887754432122355667778887777653221 22334444444 2 6777877776
No 392
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=35.00 E-value=40 Score=27.83 Aligned_cols=90 Identities=13% Similarity=0.020 Sum_probs=44.3
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-C
Q 024727 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-I 102 (263)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~ 102 (263)
.+++-+++=|+.. ....+.|++||||....+ ...+++.|.+.|++|+..-- .. ....+.+...++..+ .
T Consensus 10 ~~~~~~~~~~~~~------~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r--~~-~~~~~~~~~~~~~~~~~ 80 (271)
T 4iin_A 10 GVDLGTENLYFQS------NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYR--SN-AEVADALKNELEEKGYK 80 (271)
T ss_dssp --------------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES--SC-HHHHHHHHHHHHHTTCC
T ss_pred ccccCcceehhhh------hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CC-HHHHHHHHHHHHhcCCc
Confidence 4455555556655 124678999999988754 46799999999998764311 00 000122333332221 2
Q ss_pred ccEEE--EeCHHHHHHHHHHHHH
Q 024727 103 FDWII--ITSPEAGSVFLEAWKE 123 (263)
Q Consensus 103 ~d~Ii--FTS~~aV~~~~~~l~~ 123 (263)
..++. +++...++.+++.+.+
T Consensus 81 ~~~~~~D~~~~~~v~~~~~~~~~ 103 (271)
T 4iin_A 81 AAVIKFDAASESDFIEAIQTIVQ 103 (271)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHH
Confidence 22221 3678888888776654
No 393
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=34.89 E-value=79 Score=22.76 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=28.8
Q ss_pred CHHHHHHHhccCCCCCcEEEEEcCCCCc---hhHHHHHHhCCCe
Q 024727 163 TGKILASELPKNGKKKCTVLYPASAKAS---NEIEEGLSNRGFE 203 (263)
Q Consensus 163 t~e~L~~~l~~~~~~~~~vL~~~g~~~~---~~L~~~L~~~G~~ 203 (263)
..+.|.+.+.+.. ++++|++.|..+.+ ......|++.|++
T Consensus 57 p~~~l~~~~~~l~-~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~ 99 (124)
T 3flh_A 57 PAKDLATRIGELD-PAKTYVVYDWTGGTTLGKTALLVLLSAGFE 99 (124)
T ss_dssp CHHHHHHHGGGSC-TTSEEEEECSSSSCSHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHhcCC-CCCeEEEEeCCCCchHHHHHHHHHHHcCCe
Confidence 3456666665543 56788888888776 6788899999984
No 394
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=34.89 E-value=40 Score=28.04 Aligned_cols=66 Identities=11% Similarity=-0.065 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHH
Q 024727 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEA 113 (263)
Q Consensus 42 ~~~~~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~a 113 (263)
+.....|.|++|.++........+...|++.|.+...+..+.. . .+.+ ..+. .+..|+++ +.....
T Consensus 98 i~s~~DL~Gk~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~---~-~~~~-~al~-~G~vDa~~~~~~~~~~ 165 (302)
T 3ix1_A 98 FDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDV---G-FELG-ASIV-SGRADAVVGTYINHEY 165 (302)
T ss_dssp CSSGGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEEC---T-TCHH-HHHH-HSSSSEEEEEETTTHH
T ss_pred CCChHHcCCCEEEeCCCcchHHHHHHHHHHcCCCHHHeEEEec---C-ccHH-HHHh-CCCCCEEEEeeecchH
Confidence 3345678999999998765555678888999987432222222 1 1222 3342 37899987 555443
No 395
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=34.84 E-value=44 Score=27.42 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~~ 120 (263)
..+.|+++|||-...+ ...+++.|.+.|++|...-. . + +..+.+...+... ..+..+ +++...++.+++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r--~-~-~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM--N-R-EALEKAEASVREK-GVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--C-H-HHHHHHHHHHHTT-TSCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC--C-H-HHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHH
Confidence 4678999999987654 46789999999998764311 0 0 0112222223221 122222 2677788777766
Q ss_pred HHH
Q 024727 121 WKE 123 (263)
Q Consensus 121 l~~ 123 (263)
+.+
T Consensus 78 ~~~ 80 (262)
T 1zem_A 78 VVR 80 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 396
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=34.80 E-value=1.4e+02 Score=26.11 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=50.1
Q ss_pred HHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhC-CCCEEEEeCHHH---
Q 024727 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVASPSA--- 239 (263)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~-~~d~vvFtS~s~--- 239 (263)
.+++--.+.....+|++|++....-. .....++..|+++..++++.......+.+.+.+.+. +...|++.+|..
T Consensus 128 t~al~~~~~~l~~~gd~vl~~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG 205 (427)
T 3dyd_A 128 SQAIDLCLAVLANPGQNILVPRPGFS--LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCG 205 (427)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCT--HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTC
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCch--hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCC
Confidence 34443233333346788988876554 355677889999988888653322223444554442 455677766533
Q ss_pred -------HHHHHHHhcccc
Q 024727 240 -------VRSSWVNLISDT 251 (263)
Q Consensus 240 -------v~~~~~~~~~~~ 251 (263)
++ .+.+.++++
T Consensus 206 ~~~~~~~l~-~i~~~~~~~ 223 (427)
T 3dyd_A 206 SVFSKRHLQ-KILAVAARQ 223 (427)
T ss_dssp CCCCHHHHH-HHHHHHHHT
T ss_pred CCCCHHHHH-HHHHHHHHC
Confidence 77 777776543
No 397
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=34.76 E-value=46 Score=27.34 Aligned_cols=34 Identities=6% Similarity=0.018 Sum_probs=27.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+.|++||||-...+ ...+++.|.+.|++|...
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 37 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFG 37 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4578999999987654 467899999999987643
No 398
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=34.68 E-value=79 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=32.7
Q ss_pred CeEEEeCCC-CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024727 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (263)
Q Consensus 51 ~~ILitr~~-~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (263)
++|+|.-.. .....+.+.|++.|+++..++. + + .+..+|.||++-+.
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~-------~-~-------~l~~~d~lil~G~g 50 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD-------P-K-------AHEEADLLVLPGQG 50 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS-------T-T-------SCSSCSEEEECCCS
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC-------h-H-------HcccCCEEEECCCC
Confidence 578887532 3457788999999998876541 1 1 35689999997633
No 399
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=34.62 E-value=44 Score=27.28 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=27.3
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 43 ~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
+...++.|++||||....+ ...+++.|.+.|++|...
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 49 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC 49 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3346789999999988654 467899999999987653
No 400
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=34.60 E-value=1.7e+02 Score=24.87 Aligned_cols=61 Identities=18% Similarity=0.041 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh---CCCCEEEEeCHH
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPS 238 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l---~~~d~vvFtS~s 238 (263)
.+|++|++.............++..|+++..+++-... ..+.+++.+.+ .+..+|+++++.
T Consensus 81 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~ 144 (392)
T 2z9v_A 81 SPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNE--AIDPQAVADMLKAHPEITVVSVCHHD 144 (392)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTS--CCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred CCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCC--CCCHHHHHHHHhcCCCCcEEEEeccC
Confidence 35677887776543222344445568887777653211 12334444444 256677777654
No 401
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=34.54 E-value=1.3e+02 Score=25.66 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=61.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024727 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (263)
Q Consensus 50 g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~-----------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (263)
.++|+|.....-...+.+.|.+.|. +..+.. +..... .+.+.+++. .+.+.|.++.+.++--..
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a--~i~~a~~vi~~~~~d~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHT--CSTTEEEEEECCSSHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhc--ChhhccEEEEcCCccHHH
Confidence 4578887765555677777777776 443311 011111 111122211 357899999988755444
Q ss_pred HHHHH--HHcCCCCcEEEEe--ChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH
Q 024727 117 FLEAW--KEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (263)
Q Consensus 117 ~~~~l--~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~ 170 (263)
..-.+ ++.+ ++.++++. .+...+.+++. |.+..+.|+...+..+++.
T Consensus 192 ~~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~ 242 (336)
T 1lnq_A 192 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 242 (336)
T ss_dssp HHHHHHHHTTC-TTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHH
Confidence 43322 2322 35566664 66777888888 9987666665445555443
No 402
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=34.37 E-value=1.2e+02 Score=21.34 Aligned_cols=110 Identities=10% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHhcC---------CCccEEEEeC----H
Q 024727 48 NSNPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD---------TIFDWIIITS----P 111 (263)
Q Consensus 48 l~g~~ILitr~~~-~~~~l~~~L~~~G~--~v~~~p~~~~~~~~~~~~l~~~l~~l---------~~~d~IiFTS----~ 111 (263)
..+.+||+.-... ....+...|++.|+ .+... .+.++....+... ..+|.|++-- .
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~ 75 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRC--------ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGT 75 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEE--------CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSS
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEE--------CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCC
Confidence 4567899886654 34678888999887 33321 2333334444331 5689888742 2
Q ss_pred HHHHHHHHHHHHcC-CCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 112 EAGSVFLEAWKEAG-TPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 112 ~aV~~~~~~l~~~~-~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
++.+ +++.+.+.. ..+++++++ +..+ ...+.+. |.. ++.++..+.+.|.+.+..
T Consensus 76 ~g~~-~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 134 (149)
T 1k66_A 76 DGRE-VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY------SIS-SYIVKPLEIDRLTETVQT 134 (149)
T ss_dssp CHHH-HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred CHHH-HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC------CCC-EEEeCCCCHHHHHHHHHH
Confidence 4443 334444332 135666655 3322 2333445 765 466777888888877754
No 403
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=34.26 E-value=76 Score=24.95 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred cEEEEEcCCCC------chhHHHHHHhCCCeeeEEeeeccccC----------------CCChHHHHHHhCCCCEEEEeC
Q 024727 179 CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV----------------HHVDQTVLKQALSIPVVAVAS 236 (263)
Q Consensus 179 ~~vL~~~g~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~----------------~~~~~~~~~~l~~~d~vvFtS 236 (263)
.+||++-|... -+.+.+.|++.|.+|+.+.+++..+. ++......+.+...|.|+|.|
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 45666655432 14456677778888888888775100 000011123345789999988
Q ss_pred H-------HHHHHHHHHhccc----cCCCCceEEEE
Q 024727 237 P-------SAVRSSWVNLISD----TEQWSNSVACI 261 (263)
Q Consensus 237 ~-------s~v~~~~~~~~~~----~~~~~~~i~~I 261 (263)
| ..++ .|++.+.. ..+.+.+++++
T Consensus 87 P~y~~~~~~~lk-~~ld~~~~~~~~~~l~gK~~~~~ 121 (211)
T 1ydg_A 87 PTRFGGATSQMR-AFIDTLGGLWSSGKLANKTFSAM 121 (211)
T ss_dssp EEETTEECHHHH-HHHHTTHHHHHTTTTTTCEEEEE
T ss_pred CccccCccHHHH-HHHHHhccccccccCCCCEEEEE
Confidence 5 5688 88887532 12445565544
No 404
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=34.24 E-value=31 Score=27.00 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=33.3
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHHHH
Q 024727 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAG 114 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~~aV 114 (263)
...+.+.|++.|+++....+. + .+.+.+...+. ....+|.||.|-..++
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV---~-Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLV---P-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE---C-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEe---C-CCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 456899999999998765432 2 33455655553 2467899998876653
No 405
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=34.14 E-value=53 Score=25.48 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=47.7
Q ss_pred CcEEEEeChhHHHHHHH-hhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeE
Q 024727 128 NVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (263)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~ 206 (263)
+.+++|-| .|++.|++ . |+.+..+-+.. ++|++.+.+.+++..+.+
T Consensus 39 Gf~l~AT~-gTa~~L~e~~------Gl~v~~v~k~~------------------------eGG~p~I~d~I~~geIdl-- 85 (152)
T 1b93_A 39 QHVLYATG-TTGNLISRAT------GMNVNAMLSGP------------------------MGGDQQVGALISEGKIDV-- 85 (152)
T ss_dssp TSEEEEET-THHHHHHHHH------CCCCEEECCGG------------------------GTHHHHHHHHHHTTCCCE--
T ss_pred CCEEEEcc-HHHHHHHHHh------CceeEEEEecC------------------------CCCCchHHHHHHCCCccE--
Confidence 56899987 69999999 8 99875542211 013444555554443322
Q ss_pred Eeeecccc--CCC---ChHHHHHHhCCCCEEEEeCHHHHHHHHHHhc
Q 024727 207 LNTYTTEP--VHH---VDQTVLKQALSIPVVAVASPSAVRSSWVNLI 248 (263)
Q Consensus 207 ~~vY~~~~--~~~---~~~~~~~~l~~~d~vvFtS~s~v~~~~~~~~ 248 (263)
+ +..+.+ ... +...+.+..-..++=++|+..+++ ++++.+
T Consensus 86 V-Int~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~-a~v~ai 130 (152)
T 1b93_A 86 L-IFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATAD-FIIQSP 130 (152)
T ss_dssp E-EEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHH-HHHTSG
T ss_pred E-EEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHH-HHHHHH
Confidence 2 222221 111 111233322366678899999999 887654
No 406
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=34.13 E-value=50 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
+..+.|++||||-...+ ...+++.|.+.|++|+.+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 40 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILF 40 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEE
Confidence 34688999999988754 467999999999998754
No 407
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=34.10 E-value=54 Score=27.60 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=49.4
Q ss_pred CCCCCCCeEEEeCCCC---ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLE 119 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~---~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~ 119 (263)
+..+.|+++|||-... -...+++.|.+.|++|... .+... ..+.+++.....+...++. +|+..+++.+++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~--~r~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFT--YQGDA--LKKRVEPLAEELGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEE--ECSHH--HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEE--cCCHH--HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHH
Confidence 3468899999998753 3567999999999987643 11110 0122222222223322221 378889998888
Q ss_pred HHHHc-CCCCcEEEEeC
Q 024727 120 AWKEA-GTPNVRIGVVG 135 (263)
Q Consensus 120 ~l~~~-~~~~~~i~aVG 135 (263)
.+.+. +.-+.-|-+.|
T Consensus 102 ~~~~~~g~iD~lVnnAG 118 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIG 118 (293)
T ss_dssp HHHHHTSCCSEEEECCC
T ss_pred HHHHhcCCCCEEEECCc
Confidence 77654 22234444444
No 408
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=34.02 E-value=66 Score=27.72 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=79.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHHHHHH-cCCCCcEEEEeChh
Q 024727 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGAG 137 (263)
Q Consensus 66 ~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~~~~~l~~-~~~~~~~i~aVG~~ 137 (263)
.+..++.|++...+-+-+ ....+++.+.+ ++..+.|.|+.--|-- + +...+.+.. ...|+.. +.
T Consensus 55 ~k~~~~~Gi~~~~~~lp~---~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~-----p~ 126 (288)
T 1b0a_A 55 RKACEEVGFVSRSYDLPE---TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFH-----PY 126 (288)
T ss_dssp HHHHHHHTCEECCEEECT---TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCS-----HH
T ss_pred HHHHHHcCCEEEEEECCC---CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCC-----cc
Confidence 344677798776543311 11234444444 4557889998876521 1 111111110 1123333 33
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCC-CchhHHHHHHhCCCeeeEEeeecccc
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEP 214 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~-~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (263)
-...|- . |-. .+.| -|++++++.|.... ..|++++++.+.. -...+...|...|++|+-+.-.
T Consensus 127 n~g~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---- 192 (288)
T 1b0a_A 127 NVGRLC-Q------RAP-RLRP--CTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---- 192 (288)
T ss_dssp HHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS----
T ss_pred chhHHh-C------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC----
Confidence 333332 2 422 2334 47788887777654 4789999998875 3455888888999988665311
Q ss_pred CCCChHHHHHHhCCCCEEEEeCH
Q 024727 215 VHHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 215 ~~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
+. ++.+.+...|+|+-+.+
T Consensus 193 -t~---~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 193 -TK---NLRHHVENADLLIVAVG 211 (288)
T ss_dssp -CS---CHHHHHHHCSEEEECSC
T ss_pred -ch---hHHHHhccCCEEEECCC
Confidence 12 23333457888887766
No 409
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=33.86 E-value=1.4e+02 Score=25.19 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=15.8
Q ss_pred CCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEee
Q 024727 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (263)
Q Consensus 176 ~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~v 209 (263)
.+|++|++....-....+....+..|+++..+++
T Consensus 75 ~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 108 (384)
T 3zrp_A 75 KPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRP 108 (384)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECC
T ss_pred CCCCEEEEecCCcchHHHHHHHHHcCCcEEEecC
Confidence 3445555554433222233344455665555543
No 410
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=33.68 E-value=71 Score=24.63 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=37.5
Q ss_pred CeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEE---eeeCCCchHHHHHHhcCCCccEEEEeCH
Q 024727 51 PKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQ---HAQGPDTDRLSSVLNADTIFDWIIITSP 111 (263)
Q Consensus 51 ~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~---~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (263)
|+||||..... ...+.+.|. .|++|..+---. ..-+.+.+.+++.++..+..|.||....
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag 67 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATG 67 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence 38999987654 467888888 899877542110 0112234556666655566888887643
No 411
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=33.63 E-value=61 Score=27.83 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=48.7
Q ss_pred HHHHhccCC-CCCcEEEEEcCCCCc-----hhHHHHHHhCCC-eeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCHHH
Q 024727 167 LASELPKNG-KKKCTVLYPASAKAS-----NEIEEGLSNRGF-EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (263)
Q Consensus 167 L~~~l~~~~-~~~~~vL~~~g~~~~-----~~L~~~L~~~G~-~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~s~ 239 (263)
+.+.+.+.. .++.+|+|+...... +...+.+++.|+ +|..+.+.++.... .+++.+.+.+.|+|.|+-+.+
T Consensus 44 i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~--~~~~~~~l~~ad~I~v~GGnt 121 (291)
T 3en0_A 44 ILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGD--DSGYRLFVEQCTGIFMTGGDQ 121 (291)
T ss_dssp HHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGG--CHHHHHHHHHCSEEEECCSCH
T ss_pred HHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccC--CHHHHHHHhcCCEEEECCCCH
Confidence 344444332 123688887554332 456778888999 68777776543211 123455567899999999988
Q ss_pred HHHHHHHhcc
Q 024727 240 VRSSWVNLIS 249 (263)
Q Consensus 240 v~~~~~~~~~ 249 (263)
.+ +.+.+.
T Consensus 122 ~~--l~~~l~ 129 (291)
T 3en0_A 122 LR--LCGLLA 129 (291)
T ss_dssp HH--HHHHHT
T ss_pred HH--HHHHHH
Confidence 77 444443
No 412
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=33.61 E-value=1.3e+02 Score=24.84 Aligned_cols=50 Identities=10% Similarity=-0.102 Sum_probs=41.0
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHHc----CCCCcEEEEeChhHHHHHHHh
Q 024727 96 VLNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEV 145 (263)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~~~~~l~~~----~~~~~~i~aVG~~Ta~~L~~~ 145 (263)
+.+...+-+.|.+-|++++.++.+.+.+. ++.++.++.-+..++..|.+.
T Consensus 14 Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~ 67 (229)
T 1lk5_A 14 ALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEH 67 (229)
T ss_dssp HGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHT
T ss_pred HHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhC
Confidence 34446788999999999999999999654 222688999999999999987
No 413
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=33.57 E-value=51 Score=26.88 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=42.8
Q ss_pred cEEEEEcCCCC---c--------hhHHHHHHhC--CC-eeeEEeeeccccCCCCh-------------------------
Q 024727 179 CTVLYPASAKA---S--------NEIEEGLSNR--GF-EVVRLNTYTTEPVHHVD------------------------- 219 (263)
Q Consensus 179 ~~vL~~~g~~~---~--------~~L~~~L~~~--G~-~v~~~~vY~~~~~~~~~------------------------- 219 (263)
.+||++.|... . +.+.+.|++. |. +|..+.+|+...+....
T Consensus 5 mkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 84 (223)
T 3u7i_A 5 NKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTER 84 (223)
T ss_dssp CEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHHH
Confidence 36777766543 1 3445566654 57 88888888754333221
Q ss_pred -HHHHHHhCCCCEEEEeCH-------HHHHHHHHHhc
Q 024727 220 -QTVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (263)
Q Consensus 220 -~~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~ 248 (263)
.++.+.+...|.|+|.+| ..++ .|++.+
T Consensus 85 ~~~l~~~~~~aD~iv~~~P~y~~~~p~~lK-~~iD~~ 120 (223)
T 3u7i_A 85 MSEILQQFKSANTYVIVLPLHNFNIPSKLK-DYMDNI 120 (223)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCEEEEEcChhhccCCHHHH-HHHHHH
Confidence 012333468999999984 6788 888865
No 414
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=33.54 E-value=83 Score=26.18 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=36.9
Q ss_pred CcEEEEEcCC--CCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCH
Q 024727 178 KCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 178 ~~~vL~~~g~--~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
.++|+++... +....+.+.|++.|+++..+.+|.....+.. +.++|.|+++-+
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~-------~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAE-------IRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSC-------GGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCc-------cccCCEEEECCC
Confidence 3678888653 4567889999999999888888765432221 246787877643
No 415
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=33.50 E-value=60 Score=27.03 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 024727 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (263)
Q Consensus 50 g~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~ 118 (263)
.++|.+...... .+-+.+.|++.|.++.. .+.. ..+. +.+.+.+.....+|+|++++-.....++
T Consensus 123 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~ 198 (313)
T 2h3h_A 123 KGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILND--EEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQA 198 (313)
T ss_dssp CSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEEC--SSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHH
T ss_pred CCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eecC--CCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHH
Confidence 356776654321 23356677777876653 1111 1121 2345555544578999998877777778
Q ss_pred HHHHHcCC-CCcEEEEeChhH
Q 024727 119 EAWKEAGT-PNVRIGVVGAGT 138 (263)
Q Consensus 119 ~~l~~~~~-~~~~i~aVG~~T 138 (263)
+.+.+.+. +++.++..+...
T Consensus 199 ~al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 199 LVVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp HHHHHTTCTTTSEEEEECCCH
T ss_pred HHHHHcCCCCCeEEEEeCCCH
Confidence 88888775 368888887543
No 416
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=33.44 E-value=47 Score=27.31 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=26.7
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
...+.|++||||-...+ ...+++.|.+.|++|...
T Consensus 8 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 43 (267)
T 1iy8_A 8 TTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLV 43 (267)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 34578999999987654 467999999999987643
No 417
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=33.42 E-value=66 Score=24.88 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=38.3
Q ss_pred hHHHHHHh-CCCeeeEEeeeccccC----------CC-ChHHHHHHhCCCCEEEEeCH-------HHHHHHHHHhcccc-
Q 024727 192 EIEEGLSN-RGFEVVRLNTYTTEPV----------HH-VDQTVLKQALSIPVVAVASP-------SAVRSSWVNLISDT- 251 (263)
Q Consensus 192 ~L~~~L~~-~G~~v~~~~vY~~~~~----------~~-~~~~~~~~l~~~d~vvFtS~-------s~v~~~~~~~~~~~- 251 (263)
.+.+.|++ .|++|+.+.+++..+. .. .... .+.+...|.|+|.|| ..++ .|++.+...
T Consensus 21 ~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP~y~~~~~~~lk-~~ld~~~~~~ 98 (198)
T 3b6i_A 21 AVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTPTRFGNMSGQMR-TFLDQTGGLW 98 (198)
T ss_dssp HHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEEEETTEECHHHH-HHHTTCHHHH
T ss_pred HHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeChhcCCchHHHH-HHHHHhhhhh
Confidence 34455665 6777766666653110 00 0000 233568999999986 4677 888766421
Q ss_pred ---CCCCceEEEEC
Q 024727 252 ---EQWSNSVACIA 262 (263)
Q Consensus 252 ---~~~~~~i~~IG 262 (263)
.+.+.++++++
T Consensus 99 ~~~~l~~K~~~~~~ 112 (198)
T 3b6i_A 99 ASGALYGKLASVFS 112 (198)
T ss_dssp HHTTTTTCEEEEEE
T ss_pred hhcccCCCEEEEEE
Confidence 24556666553
No 418
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=33.27 E-value=1.3e+02 Score=24.78 Aligned_cols=54 Identities=4% Similarity=-0.148 Sum_probs=42.6
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHHc----CCCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024727 96 VLNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (263)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~~~~~l~~~----~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (263)
+.+...+-+.|.+-|.+++..+.+.+.+. +++++.++.-+..++..|++. |+++
T Consensus 16 Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~------gi~v 73 (227)
T 1uj6_A 16 AIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKRE------GIPL 73 (227)
T ss_dssp HHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHT------TCCB
T ss_pred HHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhC------CCeE
Confidence 34446788999999999999999999754 222388899999999999977 7654
No 419
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=33.15 E-value=26 Score=29.59 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHhCCCcEEEeceEEee--eCCC-----------------------------chHHHHHHhcCCCccEEEEeCH--
Q 024727 65 LIKALAKHRIDCLELPLIQHA--QGPD-----------------------------TDRLSSVLNADTIFDWIIITSP-- 111 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~--~~~~-----------------------------~~~l~~~l~~l~~~d~IiFTS~-- 111 (263)
+.+.|++.|.+|..+.+++.. |.-+ .+.+....+.+..+|.|||.+|
T Consensus 25 ~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~IV~~~P~y 104 (273)
T 1d4a_A 25 AAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQ 104 (273)
T ss_dssp HHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEEEEEECB
T ss_pred HHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCEEEEECchh
Confidence 444566779999888777643 1100 1234444445678899999886
Q ss_pred -----HHHHHHHHHHH
Q 024727 112 -----EAGSVFLEAWK 122 (263)
Q Consensus 112 -----~aV~~~~~~l~ 122 (263)
..++.|+..+.
T Consensus 105 ~~s~Pa~LK~~iDrv~ 120 (273)
T 1d4a_A 105 WFGVPAILKGWFERVF 120 (273)
T ss_dssp TTBCCHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHH
Confidence 56677777664
No 420
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=33.00 E-value=1.3e+02 Score=21.12 Aligned_cols=109 Identities=14% Similarity=0.040 Sum_probs=61.9
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 024727 49 SNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (263)
Q Consensus 49 ~g~~ILitr~~~-~~~~l~~~L~~~G-~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~~~~~l~ 122 (263)
.+.+||+.-... ....+...|++.| +++.... +.++....+ ....+|.|+.-. .++.+ +++.+.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~g~~-~~~~l~ 82 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSE--------TDDFLKGPP-ADTRPGIVILDLGGGDLLGKP-GIVEAR 82 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEEC--------GGGGGGCCC-TTCCCSEEEEEEETTGGGGST-THHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEec--------cHHHHHHHH-hccCCCEEEEeCCCCCchHHH-HHHHHH
Confidence 456899987654 3467888899888 6654321 111111112 225688888752 23333 333444
Q ss_pred HcCCCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 123 EAGTPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 123 ~~~~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
+... +++++++ |... ...+.+. |.. ++..+..+.+.|...+....
T Consensus 83 ~~~~-~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 83 ALWA-TVPLIAVSDELTSEQTRVLVRM------NAS-DWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp GGGT-TCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHTC
T ss_pred hhCC-CCcEEEEeCCCCHHHHHHHHHc------CcH-hhccCCCCHHHHHHHHHHHh
Confidence 4432 5566554 4333 2333445 765 46777789999988887654
No 421
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=32.97 E-value=42 Score=29.35 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=37.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHHcCCCCcEEEEeC
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~~~~~l~~~~~~~~~i~aVG 135 (263)
+.+.|.+.|.++..+.+ .. .+...+ ...+.++|.|+|-||. .+..|++.+....+.+.+++++|
T Consensus 272 ia~~l~~~g~~v~~~~~---~~-~~~~~~---~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 272 LMDGLVAGGCEVKLFKL---SV-SDRNDV---IKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHTTCEEEEEEG---GG-SCHHHH---HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHhcCCeEEEEEC---CC-CCHHHH---HHHHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 44455556765543332 21 122222 2234679999999852 57888887765455677777776
No 422
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=32.79 E-value=40 Score=27.56 Aligned_cols=74 Identities=7% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC----CCccEEE--EeCHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD----TIFDWII--ITSPEAGSVFL 118 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l----~~~d~Ii--FTS~~aV~~~~ 118 (263)
..+.|+++|||....+ ...+++.|.+.|++|+..- +.. +..+++.+.+... ....++. +++..+++.++
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIA--RSK--QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEI 78 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEE--SCH--HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHH
Confidence 5678999999988654 4678999999999876431 110 0112222222221 2222222 36788888887
Q ss_pred HHHHH
Q 024727 119 EAWKE 123 (263)
Q Consensus 119 ~~l~~ 123 (263)
+.+.+
T Consensus 79 ~~~~~ 83 (250)
T 3nyw_A 79 KDIHQ 83 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 423
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.75 E-value=1.1e+02 Score=24.69 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCC-------chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeCHHHHH
Q 024727 177 KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR 241 (263)
Q Consensus 177 ~~~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS~s~v~ 241 (263)
.+++|+|+....+ -..+.+.|+..|+++..+.+.+ ...++..+.+.+.|.|+++-+.+..
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-----~~~~~~~~~l~~ad~I~l~GG~~~~ 92 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-----ESLGEITTKLRKNDFIYVTGGNTFF 92 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-----SCHHHHHHHHHHSSEEEECCSCHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----CChHHHHHHHHhCCEEEECCCCHHH
Confidence 4688888864332 2457788999999877665543 2333444445689999998876655
No 424
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=32.74 E-value=38 Score=29.09 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=46.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~~~~~l 121 (263)
.|.+|+++.+......+...++..|+++..+|+-.. ...|.+.+++.+++-.+...|++++++ + ++.+.+.+
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 160 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALV 160 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHH
Confidence 367899988764333355556677999988876221 112456677777433456788888865 2 45566666
Q ss_pred HHc
Q 024727 122 KEA 124 (263)
Q Consensus 122 ~~~ 124 (263)
++.
T Consensus 161 ~~~ 163 (392)
T 2z9v_A 161 SAH 163 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 425
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=32.66 E-value=98 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=10.0
Q ss_pred CCCchhHHHHHHhCCCee
Q 024727 187 AKASNEIEEGLSNRGFEV 204 (263)
Q Consensus 187 ~~~~~~L~~~L~~~G~~v 204 (263)
...-+.+.+.|+..|+.+
T Consensus 56 ~~~~~~l~~~L~~~g~~~ 73 (185)
T 2jgn_A 56 KKGADSLEDFLYHEGYAC 73 (185)
T ss_dssp HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHcCCce
Confidence 334455666666666543
No 426
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=32.61 E-value=36 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEE
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~ 78 (263)
.+++.|++||||-.... ...+.+.|.+.|++|..
T Consensus 2 ~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~ 36 (261)
T 1gee_A 2 YKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVV 36 (261)
T ss_dssp CGGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 34578999999987654 46789999999988764
No 427
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=32.51 E-value=1.4e+02 Score=21.43 Aligned_cols=108 Identities=7% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHh--------cCCCccEEEEe----CHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLN--------ADTIFDWIIIT----SPEAG 114 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~--~v~~~p~~~~~~~~~~~~l~~~l~--------~l~~~d~IiFT----S~~aV 114 (263)
+.+||+.-... ....+.+.|++.|+ .+... .+.++....+. ....+|.|+.- ..++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~ 75 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAF--------TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGI 75 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEE--------SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEe--------CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHH
Confidence 46899886654 35678888999997 44322 23333334443 23578888874 33455
Q ss_pred HHHHHHHHHc-CCCCcEEEEe-ChhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 115 SVFLEAWKEA-GTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 115 ~~~~~~l~~~-~~~~~~i~aV-G~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+.+ +.+.+. ...+++++++ |.... ..+.+. |.. ++..+..+.+.|.+.+.+
T Consensus 76 ~~~-~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~ 131 (152)
T 3heb_A 76 DIL-KLVKENPHTRRSPVVILTTTDDQREIQRCYDL------GAN-VYITKPVNYENFANAIRQ 131 (152)
T ss_dssp HHH-HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred HHH-HHHHhcccccCCCEEEEecCCCHHHHHHHHHC------CCc-EEEeCCCCHHHHHHHHHH
Confidence 544 445542 2235566554 44333 333445 765 467777888888877765
No 428
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=32.20 E-value=1.1e+02 Score=26.01 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=44.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEece-------------------EEeeeC--CCchHHHHHHhcCCCcc
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPL-------------------IQHAQG--PDTDRLSSVLNADTIFD 104 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~-------------------~~~~~~--~~~~~l~~~l~~l~~~d 104 (263)
++.+++||||..... ...+.+.|.+.|.+|..+-- .++... .|.+.+.+.++. ..+|
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~-~~~d 85 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE-HEID 85 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH-TTCC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh-CCCC
Confidence 345789999988653 46788888888988764421 111111 133445555532 2688
Q ss_pred EEEEeCHH----HHHHHHHHHHHcC
Q 024727 105 WIIITSPE----AGSVFLEAWKEAG 125 (263)
Q Consensus 105 ~IiFTS~~----aV~~~~~~l~~~~ 125 (263)
.||.+-+. +...+++.+.+.+
T Consensus 86 ~Vi~~a~~~n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 86 IVVSTVGGESILDQIALVKAMKAVG 110 (346)
T ss_dssp EEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred EEEECCchhhHHHHHHHHHHHHHcC
Confidence 88876653 4556666666554
No 429
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=32.15 E-value=51 Score=27.46 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=44.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~l 121 (263)
..+.|+++|||....+ ...+++.|.+.|++|+..- . +.+.+++....++ ....+. +++...++.+++.+
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~------r-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVAD------V-NEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE------S-SHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe------C-CHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence 5688999999988754 4679999999999876531 1 1222333222221 222221 37888888887766
Q ss_pred HH
Q 024727 122 KE 123 (263)
Q Consensus 122 ~~ 123 (263)
.+
T Consensus 96 ~~ 97 (277)
T 4dqx_A 96 TA 97 (277)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 430
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=32.14 E-value=46 Score=25.92 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=33.8
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV 114 (263)
....+.+.|++.|+++..... .+ .| +.+.+.+++. .++|.||.|-..++
T Consensus 28 n~~~l~~~l~~~G~~v~~~~i---v~-Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPEV---VA-DG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCEE---EC-SS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEEE---eC-CH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 456789999999998765433 32 34 6666666543 37999998876654
No 431
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=32.14 E-value=21 Score=27.98 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=43.5
Q ss_pred EEEEEcCCCCc-----hhHHHHHHhCCCeeeEEeeeccccC----------C--CChHHHHHHhCCCCEEEEeCH-----
Q 024727 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPV----------H--HVDQTVLKQALSIPVVAVASP----- 237 (263)
Q Consensus 180 ~vL~~~g~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~----------~--~~~~~~~~~l~~~d~vvFtS~----- 237 (263)
+++++-|..+. +.+.+.|++.|++|+.+.+++..+. + ..... .+.+...|.|+|.||
T Consensus 6 kilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~y~~~ 84 (199)
T 2zki_A 6 NILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPTRYGN 84 (199)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEECBTTB
T ss_pred EEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECCccccC
Confidence 45555444221 3445566667888877777665100 0 00111 223457899999886
Q ss_pred --HHHHHHHHHhccc----cCCCCceEEEE
Q 024727 238 --SAVRSSWVNLISD----TEQWSNSVACI 261 (263)
Q Consensus 238 --s~v~~~~~~~~~~----~~~~~~~i~~I 261 (263)
..++ .|++.+.. ..+.+.+++++
T Consensus 85 ~~~~lk-~~ld~~~~~~~~~~l~gK~~~~~ 113 (199)
T 2zki_A 85 MAGGLK-TFLDTTAILWKDNVLYGKPVTFF 113 (199)
T ss_dssp CCHHHH-HHHHTTHHHHHTTSSTTCEEEEE
T ss_pred ccHHHH-HHHHHhhhcccccccCCCEEEEE
Confidence 4677 77776521 12445565554
No 432
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.11 E-value=1.3e+02 Score=21.14 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEeC----HHHHHHHHHHHHH
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITS----PEAGSVFLEAWKE 123 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~-l~~~d~IiFTS----~~aV~~~~~~l~~ 123 (263)
..+||+.-... ....+...|++.|+.+... .+.++....+.. -..+|.|++-- .++.+ +++.+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~-~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTA--------SSSTEGLRIFTENCNSIDVVITDMKMPKLSGMD-ILREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHH-HHHHHHH
Confidence 46888886653 3567888899888755422 233333344432 35789888753 23444 3444554
Q ss_pred cCCCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 124 AGTPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 124 ~~~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
.. ++.+++++ +... ...+.+. |.. ++..+..+.+.|...+...
T Consensus 74 ~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 74 IT-PHMAVIILTGHGDLDNAILAMKE------GAF-EYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp HC-TTCEEEEEECTTCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHH
T ss_pred hC-CCCeEEEEECCCCHHHHHHHHHh------Ccc-eeEeCCCCHHHHHHHHHHH
Confidence 43 35666655 3333 2334445 765 3667778889888777653
No 433
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=31.93 E-value=56 Score=27.56 Aligned_cols=36 Identities=11% Similarity=-0.048 Sum_probs=28.3
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
++..+.|++||||....+ ...+++.|.+.|++|+..
T Consensus 25 ~m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~ 61 (301)
T 3tjr_A 25 FLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLS 61 (301)
T ss_dssp CCCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 344688999999988765 467999999999987643
No 434
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=31.92 E-value=1.2e+02 Score=20.68 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=58.5
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHcC
Q 024727 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (263)
Q Consensus 51 ~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~l~~~~ 125 (263)
++|++.-... ....+...|++.|+++... .+.++....+ ....+|.++.- ..++.+ +++.+.+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~~-~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~ 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEA--------EDYDSAVNQL-NEPWPDLILLAWMLPGGSGIQ-FIKHLRRES 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHTTC-SSSCCSEEEEESEETTEEHHH-HHHHHHTST
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEe--------CCHHHHHHHH-hccCCCEEEEecCCCCCCHHH-HHHHHHhCc
Confidence 5788886543 3456788888888765422 2222222222 12468888764 234554 344455432
Q ss_pred -CCCcEEEEeChhH-HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 126 -TPNVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 126 -~~~~~i~aVG~~T-a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
..+.+++.+.... .....+.+ ..|.. ++..+..+.+.|...+..
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~---~~ga~-~~l~Kp~~~~~l~~~i~~ 118 (127)
T 2jba_A 73 MTRDIPVVMLTARGEEEDRVRGL---ETGAD-DCITKPFSPKELVARIKA 118 (127)
T ss_dssp TTTTSCEEEEEETTHHHHHHTTC---CCSCS-EEEEESCCHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHH---hcCCC-eEEeCCCCHHHHHHHHHH
Confidence 2466776664433 33333221 12544 466666788888877754
No 435
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=31.88 E-value=27 Score=29.49 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=33.1
Q ss_pred CccEEEEeCHHHHHHH----HHHHHHcCCCCcEEEEeChh----HHHHHHHhhhhcCCCCceeecCC
Q 024727 102 IFDWIIITSPEAGSVF----LEAWKEAGTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPS 160 (263)
Q Consensus 102 ~~d~IiFTS~~aV~~~----~~~l~~~~~~~~~i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~ 160 (263)
+.|.+||.|||++--- -+.+.. .+++.++||.. ..+.|++. |+--.+++.
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~kd~l~~~------g~GYIivk~ 121 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLKVKDEMEEQ------GLGYILVKP 121 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGGGHHHHHHT------TCEEEEETT
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchhhHHHHHhc------CCcEEEEec
Confidence 7899999999976332 222322 35677776543 37889988 887655553
No 436
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=31.87 E-value=69 Score=23.26 Aligned_cols=48 Identities=8% Similarity=0.112 Sum_probs=32.0
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
+.+...+.+-+-+..||+...+.|++. |+.+.. ....+.++.++.+.+
T Consensus 59 ~~l~~~gv~~vi~~~iG~~a~~~L~~~------GI~v~~-~~~~~i~eal~~~~~ 106 (124)
T 1eo1_A 59 QIIANNGVKAVIASSPGPNAFEVLNEL------GIKIYR-ATGTSVEENLKLFTE 106 (124)
T ss_dssp HHHHHTTCCEEEECCSSHHHHHHHHHH------TCEEEE-CCSCCHHHHHHHHHT
T ss_pred HHHHHCCCCEEEECCcCHHHHHHHHHC------CCEEEE-cCCCCHHHHHHHHHh
Confidence 334444443333445899999999999 999843 345677777776654
No 437
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=31.58 E-value=25 Score=29.84 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.1
Q ss_pred CCCCEEE-EeCHHHHHHHHHHhccc
Q 024727 227 LSIPVVA-VASPSAVRSSWVNLISD 250 (263)
Q Consensus 227 ~~~d~vv-FtS~s~v~~~~~~~~~~ 250 (263)
.++|+|+ ||+|.++. .....+-+
T Consensus 71 ~~~DvVIDft~p~~~~-~~~~~a~~ 94 (273)
T 1dih_A 71 DDFDVFIDFTRPEGTL-NHLAFCRQ 94 (273)
T ss_dssp TSCSEEEECSCHHHHH-HHHHHHHH
T ss_pred cCCCEEEEcCChHHHH-HHHHHHHh
Confidence 4789999 99999888 77665543
No 438
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=31.51 E-value=1.9e+02 Score=24.30 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-C-CCCEEEEeCH
Q 024727 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (263)
Q Consensus 177 ~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~-~~d~vvFtS~ 237 (263)
+|++|+++....-...+.+.++..|+++..+++.+. .-..+.+++.+.+ . +..+|+++++
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~ 146 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQNSYGAVTVTHV 146 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHSCCSEEEEESE
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCC-CCCCCHHHHHHHHhcCCCCEEEEEcc
Confidence 456777764432222233456667777766665211 1112233444333 2 5666776654
No 439
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=31.49 E-value=1.1e+02 Score=25.24 Aligned_cols=54 Identities=7% Similarity=-0.101 Sum_probs=43.8
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHHcC---CCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024727 96 VLNADTIFDWIIITSPEAGSVFLEAWKEAG---TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (263)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (263)
++....+-+.|..-|.+++.+|.+.+.+.. ..++.++.-+..|++.++++ |++.
T Consensus 12 A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~------Gi~l 68 (225)
T 3l7o_A 12 AAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQAL------GIPL 68 (225)
T ss_dssp HHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHH------TCCB
T ss_pred HHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhcc------CceE
Confidence 344457889999999999999999987641 12678888899999999999 9875
No 440
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=31.47 E-value=46 Score=28.37 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=45.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~~~~~l 121 (263)
.|.+|+++.+......+...++..|+++..+|+.......|.+.+++.+.. .+...|++++++ + ++.+.+.+
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-NSYGAVTVTHVDTSTAVLSDLKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-SCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-CCCCEEEEEccCCCcCeEcCHHHHHHHH
Confidence 467888886543333344667788999988886211111245667776643 356788888765 2 45566666
Q ss_pred HHc
Q 024727 122 KEA 124 (263)
Q Consensus 122 ~~~ 124 (263)
++.
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 655
No 441
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.29 E-value=36 Score=25.50 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=37.6
Q ss_pred chhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh--CCCCEEEEeCHHH-----HHHHHHHhccccCCCCceEEEEC
Q 024727 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSSWVNLISDTEQWSNSVACIA 262 (263)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l--~~~d~vvFtS~s~-----v~~~~~~~~~~~~~~~~~i~~IG 262 (263)
...+...|+..|++|..+-... + .+++.+.. .++|+|.+++..+ +. .+.+.+++....++++++=|
T Consensus 20 ~~~v~~~l~~~G~~Vi~lG~~~--p----~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~-~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVNIGVLS--P----QELFIKAAIETKADAILVSSLYGQGEIDCK-GLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEE--C----HHHHHHHHHHHTCSEEEEEECSSTHHHHHT-THHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEECCCCC--C----HHHHHHHHHhcCCCEEEEEecCcCcHHHHH-HHHHHHHhcCCCCCEEEEEC
Confidence 4667778899999887665532 2 23333333 3888888877432 33 33444443323356766544
No 442
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=31.29 E-value=42 Score=23.79 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=27.0
Q ss_pred cCCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 024727 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~~-~~~~l~~~L~~~G~~v~ 77 (263)
...++.|..|.++.... ....+.+.++++|+.+.
T Consensus 12 ~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~ 46 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLSKKQSELNGIAASLGADYR 46 (107)
T ss_dssp --CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEE
T ss_pred ccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEe
Confidence 45799999999987543 56789999999999875
No 443
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=31.28 E-value=92 Score=27.02 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024727 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (263)
Q Consensus 49 ~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (263)
.+++|||.-.......+.+.+++.|++++.+-... ..+..|.+.+.+..+. ..+|.|+..+-.....
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~-~~~d~v~~~~e~~~~~ 88 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVEL-EKPHYIVPEIEAIATD 88 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHH-HCCSEEEECSSCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHH-cCCCEEEECCCcCCHH
Confidence 35799999654346788999999999887654311 1111233344444322 3688888766433223
Q ss_pred HHHHHHHc
Q 024727 117 FLEAWKEA 124 (263)
Q Consensus 117 ~~~~l~~~ 124 (263)
+...+...
T Consensus 89 ~~~~l~~~ 96 (391)
T 1kjq_A 89 MLIQLEEE 96 (391)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 34444443
No 444
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=31.25 E-value=54 Score=26.84 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=44.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~l 121 (263)
..+.|+++|||-...+ ...+++.|.+.|++|...-. +.+.+++....++ ...++. +++...++.+++.+
T Consensus 4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r-------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGR-------NESNIARIREEFGPRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC-------CHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHH
Confidence 4688999999987654 46799999999998764321 1222333222221 122221 47888888888766
Q ss_pred HH
Q 024727 122 KE 123 (263)
Q Consensus 122 ~~ 123 (263)
.+
T Consensus 77 ~~ 78 (255)
T 4eso_A 77 GQ 78 (255)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 445
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=31.07 E-value=49 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=28.1
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
...+.|+++|||-...+ ...+++.|.+.|++|+..
T Consensus 6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~ 41 (262)
T 3ksu_A 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLH 41 (262)
T ss_dssp CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEE
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 45688999999987654 467999999999987753
No 446
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=31.06 E-value=71 Score=26.44 Aligned_cols=54 Identities=6% Similarity=-0.118 Sum_probs=43.6
Q ss_pred HHhcCCCccEEEEeCHHHHHHHHHHHHHcC---CCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024727 96 VLNADTIFDWIIITSPEAGSVFLEAWKEAG---TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (263)
Q Consensus 96 ~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (263)
+.....+.+.|.+-|.+++.++.+.+.+.. -.++.++.-+..|+..+++. |+++
T Consensus 14 A~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~------gi~v 70 (226)
T 2pjm_A 14 AVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQY------EIPL 70 (226)
T ss_dssp HGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHT------TCCB
T ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhc------CCeE
Confidence 344467889999999999999999987642 12678889999999999998 8864
No 447
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=31.05 E-value=85 Score=26.42 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=53.9
Q ss_pred CCCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 49 SNPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 49 ~g~~ILitr~~~~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
..++|.+..+... .+-+.+.|+++|..+....++......+ .+.++..+.....+|+|++.+-...-..++
T Consensus 180 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~ 259 (338)
T 3dbi_A 180 GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMK 259 (338)
T ss_dssp TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHH
Confidence 3456776654321 2346677888887654322222111101 123555565556789999988887777888
Q ss_pred HHHHcCC---CCcEEEEeChh
Q 024727 120 AWKEAGT---PNVRIGVVGAG 137 (263)
Q Consensus 120 ~l~~~~~---~~~~i~aVG~~ 137 (263)
.+.+.++ +++.++..+..
T Consensus 260 al~~~G~~vP~di~vvg~D~~ 280 (338)
T 3dbi_A 260 ALHERGVAVPEQVSVIGFDDI 280 (338)
T ss_dssp HHHHTTCCTTTTCEEEEESCC
T ss_pred HHHHcCCCCCCCeEEEEECCh
Confidence 8888875 47778887754
No 448
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=31.02 E-value=66 Score=27.11 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=50.0
Q ss_pred CCeEEEeCCCCC------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 50 NPKVVVTRERGK------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 50 g~~ILitr~~~~------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
.++|.+...... .+-+.+.|+++|. +.....+. ...+. +.++..+..-..+|+|+.++-...-.+++
T Consensus 175 ~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~ 251 (342)
T 1jx6_A 175 HTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYY--TKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVD 251 (342)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEEC--CCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHH
T ss_pred CceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEec--CCCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHH
Confidence 467776654322 2335567777775 22221111 11121 23455554445789999988887777788
Q ss_pred HHHHcCCCCcEEEEeChhH
Q 024727 120 AWKEAGTPNVRIGVVGAGT 138 (263)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~T 138 (263)
.+.+.+++++.++..+...
T Consensus 252 al~~~g~~di~vvg~D~~~ 270 (342)
T 1jx6_A 252 ALAELGREDIMINGWGGGS 270 (342)
T ss_dssp HHHHHTCTTSEEBCSBCCH
T ss_pred HHHHcCCCCcEEEEeCCCH
Confidence 8887776667777776543
No 449
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=31.01 E-value=61 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+.|++||||-...+ ...+++.|.+.|++|...
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 37 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLV 37 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 3577999999987654 467899999999987643
No 450
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=30.96 E-value=1.9e+02 Score=26.64 Aligned_cols=123 Identities=5% Similarity=-0.151 Sum_probs=71.2
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH-HHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCc
Q 024727 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF-EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC 179 (263)
Q Consensus 101 ~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L-~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~ 179 (263)
.+.-.|.-....+++.+ ..+.+.+..-.+..-++..+++.+ +... | ......++ +.........|+
T Consensus 192 ~~l~gi~eet~~Gvd~l-~a~~~~Gilv~p~~~vn~sVae~l~r~~~-----~------~~~~l~~g-w~r~~~~~l~Gk 258 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL-KKMDKQNELLFTAINVNDAVTKQKYDNVY-----G------CRHSLPDG-LMRATDFLISGK 258 (479)
T ss_dssp TTCCEEEECSHHHHHHH-HHHHHTTCCCSEEEECTTSHHHHTTHHHH-----H------HHHHHHHH-HHHHHCCCCTTS
T ss_pred cCeEEEEEeeCccHhHH-HHHHHcCCEEeccCCccHHHHHHHHhchH-----h------HHHHHhhh-hhhccccccCCC
Confidence 56778888899999988 666777765566666665565543 2210 1 10011122 222232335689
Q ss_pred EEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccC---CC--ChHHHHHHhCCCCEEEEeC
Q 024727 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV---HH--VDQTVLKQALSIPVVAVAS 236 (263)
Q Consensus 180 ~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~---~~--~~~~~~~~l~~~d~vvFtS 236 (263)
++.++....-...+...|+..|++|.-+..+..... .. ....+.+.+...|+|+.+.
T Consensus 259 tVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~ 320 (479)
T 1v8b_A 259 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT 320 (479)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC
T ss_pred EEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC
Confidence 999998776667788899999986654443332110 00 0012334456889888874
No 451
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=30.94 E-value=54 Score=27.36 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=43.0
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAWK 122 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~l~ 122 (263)
.+.|+++|||-...+ ...+++.|.+.|++|+..- . +.+.++.....++ ...++. +|+..+++.+++.+.
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~------r-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCAD------I-DGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEE------S-SHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe------C-CHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHH
Confidence 588999999987655 5679999999999876531 1 1222333322221 222222 367888888777664
Q ss_pred H
Q 024727 123 E 123 (263)
Q Consensus 123 ~ 123 (263)
+
T Consensus 99 ~ 99 (277)
T 3gvc_A 99 A 99 (277)
T ss_dssp H
T ss_pred H
Confidence 4
No 452
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=30.92 E-value=75 Score=25.00 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=32.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCC--ccEEEEeCHHHH
Q 024727 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTI--FDWIIITSPEAG 114 (263)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~-l~~--~d~IiFTS~~aV 114 (263)
...+.+.|++.|+++..... .+ .|.+.+.+.+.+ +.+ +|.||.|-..++
T Consensus 42 ~~~L~~~l~~~G~~v~~~~i---v~-Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSL---VP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEE---EC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEE---eC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45688999999998776433 32 344566666643 234 899998866554
No 453
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=30.90 E-value=1.3e+02 Score=25.36 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (263)
Q Consensus 48 l~g~~ILitr~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~~~~~l 121 (263)
+..++|.+..... ..+.+.+.+++.|.++.....+... ..+....-..+.. ...|.|++ .+......+++.+
T Consensus 139 ~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~ 216 (364)
T 3lop_A 139 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN-TANVGPAVDKLLA-ADVQAIFLGATAEPAAQFVRQY 216 (364)
T ss_dssp TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT-SCCCHHHHHHHHH-SCCSEEEEESCHHHHHHHHHHH
T ss_pred cCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC-CccHHHHHHHHHh-CCCCEEEEecCcHHHHHHHHHH
Confidence 3446777665432 2345778888899887543333211 1233222223322 56888888 4466677788888
Q ss_pred HHcCCCCcEEEEeC
Q 024727 122 KEAGTPNVRIGVVG 135 (263)
Q Consensus 122 ~~~~~~~~~i~aVG 135 (263)
.+.++. .+++...
T Consensus 217 ~~~g~~-~~~i~~~ 229 (364)
T 3lop_A 217 RARGGE-AQLLGLS 229 (364)
T ss_dssp HHTTCC-CEEEECT
T ss_pred HHcCCC-CeEEEec
Confidence 887763 5565543
No 454
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=30.89 E-value=1.2e+02 Score=23.56 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=38.0
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024727 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (263)
..|.|++|.+.+.......+.+.+.+.|.++.. ....+..+.-..+ ..+..|+++.....
T Consensus 144 ~dL~g~~i~~~~g~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~l-~~g~vDa~~~~~~~ 203 (259)
T 2v25_A 144 ADMKGANIGVAQAATTKKAIGEAAKKIGIDVKF------SEFPDYPSIKAAL-DAKRVDAFSVDKSI 203 (259)
T ss_dssp GGCTTCEEEEETTCSHHHHHHHHHHHTTCCCEE------EEESSHHHHHHHH-HTTSSSEEEEEHHH
T ss_pred HHhCCCEEEEecCCchHHHHHHHHHhcCCceeE------EEeCCHHHHHHHH-HcCCCcEEEecHHH
Confidence 457899999987766666777778888875432 2223333334444 35789988765443
No 455
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=30.87 E-value=1.3e+02 Score=24.47 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHH--HHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeCh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSS--VLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~--~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aVG~ 136 (263)
-+.+.|+++|..+. ++......+ .+.+.+ .+.....+|+|+..+-.....+++.+.+.++ +++.++..+.
T Consensus 145 gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vvg~d~ 221 (285)
T 3c3k_A 145 GYLNRLKFHGLDYS---RISYAENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDG 221 (285)
T ss_dssp HHHHHHHHHTCCCC---EEEECSSSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred HHHHHHHHcCCCce---EeecCCChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 35667778887654 222211111 133455 5543346889988888777777788877765 3566666654
No 456
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=30.76 E-value=1e+02 Score=25.81 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=42.2
Q ss_pred cCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024727 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (263)
Q Consensus 44 ~~~~l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (263)
....|.|++|.++........+...|++.|.+...+. ..+. +..+....| ..+..|.++...+.....
T Consensus 125 s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~---~v~~-~~~~~~~al-~~G~vDa~~~~~p~~~~~ 192 (324)
T 3ksx_A 125 TVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDIT---PLYL-SPANARAAF-AAGQVDAWAIWDPWYSAL 192 (324)
T ss_dssp SGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSE---EEEC-CHHHHHHHH-HTTCCSEEEEETTHHHHH
T ss_pred CHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeE---EEeC-CHHHHHHHH-HcCCCCEEEEccHHHHHH
Confidence 3456889999998544444457778899998653222 2222 223333445 347899988777766543
No 457
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=30.75 E-value=49 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=28.7
Q ss_pred ccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 41 ATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 41 ~~~~~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+-..++.||+||||..... ...+.+.|.+.|++|..+
T Consensus 11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~ 50 (330)
T 2pzm_A 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVI 50 (330)
T ss_dssp ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEE
T ss_pred ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 344557788999999987653 467888898899888754
No 458
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=30.66 E-value=60 Score=26.38 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=43.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEE--EEeCHHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWI--IITSPEAGSVFLEAW 121 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~I--iFTS~~aV~~~~~~l 121 (263)
..+.|+++|||-...+ ...+++.|.+.|++|...- . +.+.++.....+. ....+ =+++..+++.+++.+
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~------r-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTA------T-SESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAI 77 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE------S-SHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe------C-CHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHH
Confidence 4578999999987654 4679999999999876431 1 1122222221111 11111 147788888888766
Q ss_pred HH
Q 024727 122 KE 123 (263)
Q Consensus 122 ~~ 123 (263)
.+
T Consensus 78 ~~ 79 (248)
T 3op4_A 78 TD 79 (248)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 459
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=30.61 E-value=63 Score=25.08 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.6
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-C--CccEEEEeCHHHH
Q 024727 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDWIIITSPEAG 114 (263)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l-~--~~d~IiFTS~~aV 114 (263)
....+.+.|++.|+++..... .+ .|.+.+.+.+++. . .+|.||.|-..++
T Consensus 32 n~~~l~~~L~~~G~~v~~~~i---v~-Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 32 SGQLLHELLKEAGHKVTSYEI---VK-DDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHHHTCEEEEEEE---EC-SSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred hHHHHHHHHHHCCCeEeEEEE---eC-CCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 346789999999998876432 22 3445666666542 4 7899988876654
No 460
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=30.51 E-value=1.9e+02 Score=28.07 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred CeEEEeCCCC--C-------hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH--------HH
Q 024727 51 PKVVVTRERG--K-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EA 113 (263)
Q Consensus 51 ~~ILitr~~~--~-------~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~a 113 (263)
++|||.-... - ...+...|++.|++|... .+.++....+.....+|.||+.=- ++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a--------~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G 72 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKS--------TSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNV 72 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHhcCCCCcEEEEeCCCCcccccccH
Confidence 3788886654 3 588999999999988754 233334444433345999998643 22
Q ss_pred HHHHHHHHHHcCCCCcEEEEeChhHH-H--HHH--HhhhhcCCCCceeecCCCCCHHH-HHHHhc
Q 024727 114 GSVFLEAWKEAGTPNVRIGVVGAGTA-S--IFE--EVIQSSKCSLDVAFSPSKATGKI-LASELP 172 (263)
Q Consensus 114 V~~~~~~l~~~~~~~~~i~aVG~~Ta-~--~L~--~~~~~~~~G~~~~~~p~~~t~e~-L~~~l~ 172 (263)
. .+++.+.+.+ .+++|+.+...+. . ... .. |.. ++...-++.++ |+..|.
T Consensus 73 ~-~ll~~iR~~~-~~iPIi~lTa~~~~~~d~~~~l~~------gad-dyi~kpf~~~efl~~ri~ 128 (755)
T 2vyc_A 73 R-QLIGKLHERQ-QNVPVFLLGDREKALAAMDRDLLE------LVD-EFAWILEDTADFIAGRAV 128 (755)
T ss_dssp H-HHHHHHHHHS-TTCCEEEEECHHHHHHTCSHHHHH------HCS-EEEETTTSCHHHHHHHHH
T ss_pred H-HHHHHHHHhC-CCCCEEEEecCCcchhhccHhHhh------cCC-ceEeCCCCCHHHHHHHHH
Confidence 2 3555566554 3688888876543 1 111 22 444 56666666666 544443
No 461
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=30.39 E-value=94 Score=25.98 Aligned_cols=51 Identities=10% Similarity=-0.126 Sum_probs=43.0
Q ss_pred cCCCccEEEEeCHHHHHHHHHHHHHc----CCCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024727 99 ADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (263)
Q Consensus 99 ~l~~~d~IiFTS~~aV~~~~~~l~~~----~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (263)
...+-+.|.+-|.+++..+.+.+.+. ++.++.++.-+..|+..|++. |+++
T Consensus 24 ~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~------gi~v 78 (244)
T 2f8m_A 24 YVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKL------GIPL 78 (244)
T ss_dssp HCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHH------TCCB
T ss_pred hCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHC------CCeE
Confidence 46788999999999999999999754 233688999999999999998 8765
No 462
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=30.35 E-value=1.9e+02 Score=22.33 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=48.6
Q ss_pred CcEEEEeChhHHHHHHHhhhhcC--------CCCceeecCCC----------CCHHH-HHHHhccCCCCCcEEEEEcCCC
Q 024727 128 NVRIGVVGAGTASIFEEVIQSSK--------CSLDVAFSPSK----------ATGKI-LASELPKNGKKKCTVLYPASAK 188 (263)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~--------~G~~~~~~p~~----------~t~e~-L~~~l~~~~~~~~~vL~~~g~~ 188 (263)
..+|+++|-++...+..++++.+ .|+.+...+.. ..... +.+.+.....++.-++++...+
T Consensus 45 a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG 124 (199)
T 1x92_A 45 EGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSG 124 (199)
T ss_dssp TCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSS
T ss_pred CCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCCCCCEEEEEeCCC
Confidence 35777777777666655555433 46655433211 11111 1111112223445555555555
Q ss_pred CchhHH---HHHHhCCCeeeEEeeeccccCCCChHHHHHHhCCCCEEEEeC
Q 024727 189 ASNEIE---EGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (263)
Q Consensus 189 ~~~~L~---~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~d~vvFtS 236 (263)
...++. +.++++|+.+.-+.-.. ...+.+.++..|+++...
T Consensus 125 ~t~~~i~~~~~ak~~g~~vI~IT~~~-------~s~La~~~~~ad~~l~~~ 168 (199)
T 1x92_A 125 NSANVIQAIQAAHDREMLVVALTGRD-------GGGMASLLLPEDVEIRVP 168 (199)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECTT-------CHHHHHHCCTTCEEEECS
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCC-------CCcHHhccccCCEEEEeC
Confidence 444443 45568888775554331 122333223367666554
No 463
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=30.33 E-value=2.2e+02 Score=23.21 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHhcC---CCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChh
Q 024727 93 LSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (263)
Q Consensus 93 l~~~l~~l---~~~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aVG~~ 137 (263)
++..+... ..+|+|++++-...-..++.+.+.++ +++.++..+..
T Consensus 179 ~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~ 229 (306)
T 2vk2_A 179 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 229 (306)
T ss_dssp HHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECC
T ss_pred HHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeecCC
Confidence 45555443 56899998888777777888888775 36777777543
No 464
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=30.30 E-value=37 Score=28.13 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=54.0
Q ss_pred CCCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEe---eeCCC--c--hHHHHHHhcCCCccEEEEeCHHH
Q 024727 48 NSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQH---AQGPD--T--DRLSSVLNADTIFDWIIITSPEA 113 (263)
Q Consensus 48 l~g~~ILitr~~~-------~~~~l~~~L~~~G~~v~~~p~~~~---~~~~~--~--~~l~~~l~~l~~~d~IiFTS~~a 113 (263)
.-.++|.+..+.. ..+-+.+.|+++|..+....++.. ....+ . +.+.+.+.....+|+|+.++-..
T Consensus 129 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~ 208 (301)
T 3miz_A 129 RGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEM 208 (301)
T ss_dssp TTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHH
T ss_pred cCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHH
Confidence 3345676655432 123466778888876533222322 11111 2 45666665556789999999888
Q ss_pred HHHHHHHHHHcCCC---CcEEEEeChh
Q 024727 114 GSVFLEAWKEAGTP---NVRIGVVGAG 137 (263)
Q Consensus 114 V~~~~~~l~~~~~~---~~~i~aVG~~ 137 (263)
.-.+++.+.+.++. ++.|+..+..
T Consensus 209 A~g~~~al~~~g~~vP~di~vig~D~~ 235 (301)
T 3miz_A 209 AIQIYIAAMALGLRIPQDVSIVGFDDF 235 (301)
T ss_dssp HHHHHHHHHTTTCCHHHHCEEECSBCC
T ss_pred HHHHHHHHHHcCCCCCCCeeEEEeCCc
Confidence 88888888888763 5666666543
No 465
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=30.29 E-value=1.4e+02 Score=22.09 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=40.4
Q ss_pred CCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCC-CCchhHHHHHHhCCCeeeEEeeeccccC
Q 024727 152 SLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (263)
Q Consensus 152 G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~-~~~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (263)
.++..+.........+++.+.+...+|+.+++.... .....+.+.++..|.++..+.+.+....
T Consensus 94 ~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (178)
T 3hm2_A 94 NPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFAISHEHTV 158 (178)
T ss_dssp CCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEEEEEEEEC
T ss_pred CCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEEeecCccc
Confidence 455444332222255667777777677887765443 3456677888999999888887765443
No 466
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=30.20 E-value=56 Score=26.89 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=48.5
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEE--EeCHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWII--ITSPEAGSVFLE 119 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~--l~~~d~Ii--FTS~~aV~~~~~ 119 (263)
+..+.|++||||-...+ ...+++.|.+.|++|+..-. .. +..+++...+.. -.+..++. +++..+++.+++
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r--~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 90 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGR--DV--SELDAARRALGEQFGTDVHTVAIDLAEPDAPAELAR 90 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC--CH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 34688999999987654 46799999999998764311 00 011122222211 11222222 367888888877
Q ss_pred HHHHc-CCCCcEEEEeC
Q 024727 120 AWKEA-GTPNVRIGVVG 135 (263)
Q Consensus 120 ~l~~~-~~~~~~i~aVG 135 (263)
.+.+. +.-+.-|.+.|
T Consensus 91 ~~~~~~g~id~lv~nAg 107 (266)
T 4egf_A 91 RAAEAFGGLDVLVNNAG 107 (266)
T ss_dssp HHHHHHTSCSEEEEECC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 66543 22234444444
No 467
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=30.18 E-value=55 Score=27.10 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
.++.|++||||-...+ ...+++.|.+.|++|+..
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 44 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSV 44 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 5788999999988754 467999999999998754
No 468
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=30.06 E-value=48 Score=23.41 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=20.0
Q ss_pred CCeE-EEeCCCCChHHHHHHHHhCCCcEEE
Q 024727 50 NPKV-VVTRERGKNGKLIKALAKHRIDCLE 78 (263)
Q Consensus 50 g~~I-Litr~~~~~~~l~~~L~~~G~~v~~ 78 (263)
++.| ++++....+...+..|++.|++++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~ 85 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVN 85 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEE
Confidence 4444 4555555667888899999997653
No 469
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.03 E-value=56 Score=26.76 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeCh
Q 024727 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
+++.+.....+|+|+..+-...-..++.+.+.+++++.|+..+.
T Consensus 174 ~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~di~viG~D~ 217 (283)
T 2ioy_A 174 MENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFDG 217 (283)
T ss_dssp HHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred HHHHHHhCCCccEEEECCchHHHHHHHHHHHCCCCCcEEEEeCC
Confidence 44555444578999999888777788888888776777777764
No 470
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=30.00 E-value=61 Score=26.79 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=45.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~ 119 (263)
+..+.|++||||-...+ ...+++.|.+.|++|...- . +.+.+++....++ .+..+ +|+...++.+++
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~------r-~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~ 93 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHG------T-REDKLKEIAADLG-KDVFVFSANLSDRKSIKQLAE 93 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE------S-CHHHHHHHHHHHC-SSEEEEECCTTSHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe------C-CHHHHHHHHHHhC-CceEEEEeecCCHHHHHHHHH
Confidence 35688999999988754 4679999999999876431 1 2233333332222 22222 368888888887
Q ss_pred HHHH
Q 024727 120 AWKE 123 (263)
Q Consensus 120 ~l~~ 123 (263)
.+.+
T Consensus 94 ~~~~ 97 (266)
T 3grp_A 94 VAER 97 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 471
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=29.94 E-value=67 Score=26.95 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=50.3
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~---~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~~~~~ 120 (263)
..+.|+++|||-.. .-...+++.|.+.|++|...-. .. ...+.++......+...++. +|+..+++.+++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYL--SE--TFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEES--SG--GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeC--Ch--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 46789999999875 3356799999999998764321 11 11122333332223332222 3788899888887
Q ss_pred HHHc-CCCCcEEEEeC
Q 024727 121 WKEA-GTPNVRIGVVG 135 (263)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (263)
+.+. +.-+.-|-+.|
T Consensus 102 ~~~~~g~iD~lVnnAG 117 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVA 117 (296)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6543 22234444444
No 472
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=29.91 E-value=1.3e+02 Score=26.03 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=21.7
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEe
Q 024727 51 PKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~~~G~~v~~~ 79 (263)
++|+|.-+......+.+.+++.|++++.+
T Consensus 2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~ 30 (380)
T 3ax6_A 2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVL 30 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 57888876433667888899999887754
No 473
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=29.90 E-value=53 Score=26.89 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=44.9
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHH
Q 024727 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEA 120 (263)
Q Consensus 45 ~~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~~~~~ 120 (263)
...+.|+++|||-...+ ...+++.|.+.|++|...-. .. +..+++...+...+ ...++. +++...++.+++.
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDL--KS--EGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEES--SH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 35688999999987654 46789999999998764311 00 01122233332221 222221 3678888888876
Q ss_pred HHH
Q 024727 121 WKE 123 (263)
Q Consensus 121 l~~ 123 (263)
+.+
T Consensus 83 ~~~ 85 (256)
T 3gaf_A 83 ALD 85 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 474
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=29.79 E-value=2.3e+02 Score=26.54 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred eCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHH----HHHhccCCCCCcEEEEE
Q 024727 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKIL----ASELPKNGKKKCTVLYP 184 (263)
Q Consensus 109 TS~~aV~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L----~~~l~~~~~~~~~vL~~ 184 (263)
..+.++.-+.+.|.+. +..|++-| .|++.|++. |+.+..+.+--...++ ++.|--. -.+-||.-
T Consensus 32 ~DK~glv~~Ak~L~~l---GfeI~ATg-GTak~L~e~------GI~v~~V~kvTgfPEil~GRVKTLHP~--IhgGiLa~ 99 (534)
T 4ehi_A 32 SDKEGIVEFGKELENL---GFEILSTG-GTFKLLKEN------GIKVIEVSDFTKSPELFEGRVKTLHPK--IHGGILHK 99 (534)
T ss_dssp SSCTTHHHHHHHHHHT---TCEEEECH-HHHHHHHHT------TCCCEECBCCC--------------------------
T ss_pred cccccHHHHHHHHHHC---CCEEEEcc-HHHHHHHHC------CCceeehhhccCCchhhCCccccCChh--hhhhhccC
Confidence 4466777777777776 57899998 599999999 9998766542222222 2222111 11234433
Q ss_pred cCCCCchhHHHHHHhCCCe---eeEEeeec---cccCCCChHHHHHHh-------------CCCCEEEEeCHHHHHHHHH
Q 024727 185 ASAKASNEIEEGLSNRGFE---VVRLNTYT---TEPVHHVDQTVLKQA-------------LSIPVVAVASPSAVRSSWV 245 (263)
Q Consensus 185 ~g~~~~~~L~~~L~~~G~~---v~~~~vY~---~~~~~~~~~~~~~~l-------------~~~d~vvFtS~s~v~~~~~ 245 (263)
|+... =.+.|++.|+. +..+.+|- |+......+++++.+ ..-++.+.++|.... .++
T Consensus 100 r~~~~---h~~~l~~~~I~~iDlVvvNLYPF~~tv~~~~~~~~~iE~IDIGGpsmlRAAAKN~~~V~Vv~dp~dY~-~vl 175 (534)
T 4ehi_A 100 RSDEN---HIKQAKENEILGIDLVCVNLYPFKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYE-KVI 175 (534)
T ss_dssp -----------------CEEESEEEEECCCHHHHHHHCCCHHHHHHTSCSSHHHHHHHHHHTTTTCEEECCGGGHH-HHH
T ss_pred CCCHH---HHHHHHHcCCCceeEEEEeCcChHHHHhcCCCHHHHHHHhhcCcHHHHHHHHHcCCCEEEECCHHHHH-HHH
Confidence 33322 22346777775 33444453 322222223333322 256889999999888 777
Q ss_pred Hhcc
Q 024727 246 NLIS 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 176 ~~l~ 179 (534)
T 4ehi_A 176 ETLK 179 (534)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 475
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=29.78 E-value=1.3e+02 Score=25.28 Aligned_cols=82 Identities=15% Similarity=0.013 Sum_probs=50.2
Q ss_pred CCCCeEEEeC-CCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEE-eCHHHHHHHHH
Q 024727 48 NSNPKVVVTR-ERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIII-TSPEAGSVFLE 119 (263)
Q Consensus 48 l~g~~ILitr-~~~-----~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~-~l~~~l~~l~~~d~IiF-TS~~aV~~~~~ 119 (263)
+..++|.+.. +.. ..+.+.+.+++.|+++.... +... ..+.. .+.+.. . ...|+|++ .+......+++
T Consensus 147 ~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~-~~d~~~~~~~l~-~-~~~d~v~~~~~~~~a~~~~~ 222 (366)
T 3td9_A 147 LGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG-DQDFSAQLSVAM-S-FNPDAIYITGYYPEIALISR 222 (366)
T ss_dssp SCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT-CCCCHHHHHHHH-H-TCCSEEEECSCHHHHHHHHH
T ss_pred cCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC-CccHHHHHHHHH-h-cCCCEEEEccchhHHHHHHH
Confidence 3456777763 221 22456778889999877544 3321 12332 233332 2 57899998 78788888888
Q ss_pred HHHHcCCCCcEEEEe
Q 024727 120 AWKEAGTPNVRIGVV 134 (263)
Q Consensus 120 ~l~~~~~~~~~i~aV 134 (263)
.+.+.++. .+++..
T Consensus 223 ~~~~~g~~-~~~~~~ 236 (366)
T 3td9_A 223 QARQLGFT-GYILAG 236 (366)
T ss_dssp HHHHTTCC-SEEEEC
T ss_pred HHHHcCCC-ceEEee
Confidence 88888763 555543
No 476
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=29.39 E-value=66 Score=27.29 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEEeCH
Q 024727 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASP 237 (263)
Q Consensus 175 ~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvFtS~ 237 (263)
..+|++|++....-. .....++..|+++..+++ ....- .+.+++.+.+ .+..+|++++|
T Consensus 103 ~~~gd~vl~~~~~~~--~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p 162 (365)
T 3get_A 103 LNSKNAFLQAGVTFA--MYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLP 162 (365)
T ss_dssp CCTTCEEEECSSCCT--HHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESS
T ss_pred hCCCCEEEEeCCChH--HHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCC
Confidence 345677777665443 344556667777766555 11100 1223344333 35556666543
No 477
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}
Probab=29.28 E-value=60 Score=30.75 Aligned_cols=77 Identities=12% Similarity=-0.051 Sum_probs=43.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEee-----eCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHA-----QGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~-----~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~ 119 (263)
..+.|+++|||-...+ ...+++.|.+.|++|+..-.-... .....+.+.+.+.........-+++...++.+++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~ 94 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIE 94 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Confidence 4578999999988654 467999999999998865321000 0011223333343333333345577777777666
Q ss_pred HHH
Q 024727 120 AWK 122 (263)
Q Consensus 120 ~l~ 122 (263)
.+.
T Consensus 95 ~~~ 97 (613)
T 3oml_A 95 TAI 97 (613)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 478
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=29.22 E-value=1.8e+02 Score=21.62 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCC-CCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhccCCCCCcEEEEEcCC
Q 024727 110 SPEAGSVFLEAWKEAGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASA 187 (263)
Q Consensus 110 S~~aV~~~~~~l~~~~~-~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~~~~vL~~~g~ 187 (263)
|+..++...+.+...+. +++.+. .|.... .+... ..++..+.... .+.+.+++.+.+...+|+.+++....
T Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~-~~~~~-----~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 64 NPEAISTTEMNLQRHGLGDNVTLM-EGDAPE-ALCKI-----PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp CHHHHHHHHHHHHHTTCCTTEEEE-ESCHHH-HHTTS-----CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CHHHHHHHHHHHHHcCCCcceEEE-ecCHHH-hcccC-----CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 34444444444444444 234443 343332 33331 03444333322 35567777777766667777665443
Q ss_pred -CCchhHHHHHHhCCCeeeEEeee
Q 024727 188 -KASNEIEEGLSNRGFEVVRLNTY 210 (263)
Q Consensus 188 -~~~~~L~~~L~~~G~~v~~~~vY 210 (263)
.....+.+.|++.|+++..+.+.
T Consensus 137 ~~~~~~~~~~l~~~g~~~~~~~~~ 160 (192)
T 1l3i_A 137 LETKFEAMECLRDLGFDVNITELN 160 (192)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cchHHHHHHHHHHCCCceEEEEEE
Confidence 33466778899999877666553
No 479
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=29.13 E-value=1.6e+02 Score=21.09 Aligned_cols=111 Identities=9% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 024727 48 NSNPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (263)
Q Consensus 48 l~g~~ILitr~~~-~~~~l~~~L~~-~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~l 121 (263)
+.+.+||+.-... ....+...|++ .|+.+.. ...+..+....+. ...+|.|+.- ..++.+. ++.+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~-------~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~-~~~l 73 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVA-------EAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEA-TRHI 73 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEE-------EESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHH-HHHH
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEE-------EeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHH-HHHH
Confidence 3467899886654 34567777776 5655431 1123333344443 3568988874 2344443 4444
Q ss_pred HHcCCCCcEEEEe-Chh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC
Q 024727 122 KEAGTPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (263)
Q Consensus 122 ~~~~~~~~~i~aV-G~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (263)
.+.. .+.+++++ +.. ....+.+. |.. ++..+..+.+.|...+....
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 74 RQWD-GAARILIFTMHQGSAFALKAFEA------GAS-GYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHC-TTCCEEEEESCCSHHHHHHHHHT------TCS-EEEETTSCTTHHHHHHHHHT
T ss_pred HHhC-CCCeEEEEECCCCHHHHHHHHHC------CCc-EEEecCCCHHHHHHHHHHHH
Confidence 4443 34566555 332 23333445 765 36666678888888887654
No 480
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=29.11 E-value=1.2e+02 Score=26.45 Aligned_cols=124 Identities=7% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC
Q 024727 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (263)
Q Consensus 48 l~g~~ILitr~~~~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~ 127 (263)
+.|++|+|.-...-...+.+.+++.|++++.+......+. ..-.|..+..+....+.+.+.+++.+.-
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~------------~~~ad~~~~~~~~d~~~l~~~~~~~dvI 79 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPC------------AQVADIEIVASYDDLKAIQHLAEISDVV 79 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTT------------TTTCSEEEECCTTCHHHHHHHHHTCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCch------------HHhCCceEecCcCCHHHHHHHHHhCCEe
Q ss_pred CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEE
Q 024727 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (263)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~ 207 (263)
..-+-.+...+.+.|++. |+ ++.....-.+. ..+....+.|++.|+.+-..
T Consensus 80 ~~~~e~~~~~~~~~l~~~------g~----~~~~~~~~~~~-------------------~dK~~~k~~l~~~Gip~p~~ 130 (389)
T 3q2o_A 80 TYEFENIDYRCLQWLEKH------AY----LPQGSQLLSKT-------------------QNRFTEKNAIEKAGLPVATY 130 (389)
T ss_dssp EESCCCCCHHHHHHHHHH------SC----CTTCSHHHHHT-------------------TSHHHHHHHHHHTTCCCCCE
T ss_pred eeccccccHHHHHHHHhh------Cc----cCCCHHHHHHh-------------------cCHHHHHHHHHHCCCCCCCe
Q ss_pred eeecc
Q 024727 208 NTYTT 212 (263)
Q Consensus 208 ~vY~~ 212 (263)
.+..+
T Consensus 131 ~~~~~ 135 (389)
T 3q2o_A 131 RLVQN 135 (389)
T ss_dssp EEESS
T ss_pred EEECC
No 481
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=29.07 E-value=1.1e+02 Score=25.01 Aligned_cols=71 Identities=23% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCC--CccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeCh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~~----~~l~~~l~~l~--~~d~IiFTS~~aV~~~~~~l~~~~~~~~~i~aVG~ 136 (263)
-+.+.|+++|..+.....+.. ..+. +.++..+.... .+|+|++.+-.....+++.+.+.+..++.++..+.
T Consensus 161 gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~ 237 (309)
T 2fvy_A 161 YVIKELNDKGIKTEQLQLDTA--MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDA 237 (309)
T ss_dssp HHHHHHHHTTCCEEEEEEEEC--TTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTTCTTSCEECSBC
T ss_pred HHHHHHHhcCCceEEEEEecC--CCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHHHHHHHHHHcCCCCceEEecCC
Confidence 466788889987654322221 1121 23455553322 68999999888777888888888721677777754
No 482
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=28.99 E-value=63 Score=25.79 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=26.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+.|++|+||-.... ...+.+.|.+.|++|...
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~ 37 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIIT 37 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4577999999987654 467889999999887643
No 483
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.93 E-value=61 Score=23.45 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 116 ~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
...+.+...+.+-+-...||+...+.|++. |+.+. .....+.++.++.+.+
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~------GI~v~-~~~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSL------GISVV-TGVYGRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHT------TCEEE-CSBCSBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHC------CCEEE-ECCCCCHHHHHHHHHc
Confidence 344444444443333345899999999999 99974 3345677777776653
No 484
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=28.62 E-value=2.1e+02 Score=24.13 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=40.7
Q ss_pred cCCCC-CCCeEEEeCCCCChHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH
Q 024727 44 ASASN-SNPKVVVTRERGKNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG 114 (263)
Q Consensus 44 ~~~~l-~g~~ILitr~~~~~~~l~-~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (263)
....| .|++|.++.+......+. ..|++.|.+...+ ++.... ..+.-..+ ..+..|+++...+...
T Consensus 147 s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv---~~~~~~-~~~~~~al-~~G~vDa~~~~~p~~~ 214 (341)
T 3un6_A 147 EFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHF---SYHEMS-PAEMPAAL-SEHRITGYSVAEPFGA 214 (341)
T ss_dssp GCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSE---EEEECC-GGGHHHHH-HTTSCSEEEEETTHHH
T ss_pred CHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHe---EEEEcC-hHHHHHHH-HcCCCCEEEecCCHHH
Confidence 34568 899999998655454444 4889999864322 222222 22233444 3478999888877654
No 485
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=28.60 E-value=1.3e+02 Score=24.53 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHh-cCC-CccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeCh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLN-ADT-IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~-~l~-~~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aVG~ 136 (263)
-+.+.|+++|..+....++......+ .+.+++.+. ... .+|+|+.++-.....+++.+.+.++ +++.++..+.
T Consensus 146 Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~d~ 225 (287)
T 3bbl_A 146 GYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDD 225 (287)
T ss_dssp HHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred HHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 36667788886653221222111000 123455554 334 6899998888877778888888775 3677887765
Q ss_pred hH
Q 024727 137 GT 138 (263)
Q Consensus 137 ~T 138 (263)
..
T Consensus 226 ~~ 227 (287)
T 3bbl_A 226 AP 227 (287)
T ss_dssp CT
T ss_pred ch
Confidence 43
No 486
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=28.54 E-value=2.7e+02 Score=23.60 Aligned_cols=84 Identities=8% Similarity=-0.087 Sum_probs=48.1
Q ss_pred HHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeec----cccCCCChHHHHHHh-CCCCEEEEeCHH
Q 024727 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT----TEPVHHVDQTVLKQA-LSIPVVAVASPS 238 (263)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~----~~~~~~~~~~~~~~l-~~~d~vvFtS~s 238 (263)
.+++.-.+.....+|++|++...... .....++..|+++..+++.. ......+.+++.+.+ .+...|++++|.
T Consensus 112 ~~a~~~~~~~l~~~gd~vl~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 189 (407)
T 3nra_A 112 QGALFLAVAATVARGDKVAIVQPDYF--ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPN 189 (407)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCCT--HHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCccc--chHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCC
Confidence 34443333333446788888877665 35577788899888777621 111112334455444 366777776543
Q ss_pred ----------HHHHHHHHhccc
Q 024727 239 ----------AVRSSWVNLISD 250 (263)
Q Consensus 239 ----------~v~~~~~~~~~~ 250 (263)
.++ .+.+.+.+
T Consensus 190 nptG~~~~~~~l~-~i~~~~~~ 210 (407)
T 3nra_A 190 NPAGVVYSAEEIG-QIAALAAR 210 (407)
T ss_dssp TTTCCCCCHHHHH-HHHHHHHH
T ss_pred CCCCcccCHHHHH-HHHHHHHH
Confidence 367 77776654
No 487
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.50 E-value=64 Score=26.21 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhc-CCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChh
Q 024727 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNA-DTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (263)
Q Consensus 64 ~l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~-l~~~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aVG~~ 137 (263)
-+.+.|+++|..+. ++......+ .+.+.+.+.. ...+|+|+.++-.....+++.+.+.+. +++.++..+..
T Consensus 139 gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 215 (277)
T 3cs3_A 139 VSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNS 215 (277)
T ss_dssp HHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCC
T ss_pred HHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCCc
Confidence 35667888887765 221111000 1234445533 356899998888877778888887765 35666666543
No 488
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=28.40 E-value=69 Score=26.15 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~ 79 (263)
..+.|++||||....+ ...+.+.|.+.|++|...
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 46 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIA 46 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4578999999987654 467899999999987654
No 489
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=28.32 E-value=67 Score=26.05 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=42.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~~l 121 (263)
.+.|+++|||-...+ ...+++.|.+.|++|...-. . + +..+++.+.+...+ .+..+ +++...++.+++.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r--~-~-~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~~~~~~~~~ 78 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAAR--R-V-EKLRALGDELTAAG-AKVHVLELDVADRQGVDAAVAST 78 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES--C-H-HHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC--C-H-HHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHH
Confidence 467999999987654 46789999999998764311 0 0 01122222232221 22322 26788888887765
Q ss_pred HH
Q 024727 122 KE 123 (263)
Q Consensus 122 ~~ 123 (263)
.+
T Consensus 79 ~~ 80 (247)
T 2jah_A 79 VE 80 (247)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 490
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=28.28 E-value=2.8e+02 Score=23.75 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=87.0
Q ss_pred CeEEEeCCCCChHHHHHHHH-hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024727 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (263)
Q Consensus 51 ~~ILitr~~~~~~~l~~~L~-~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~~~~~l~~~~~~~ 128 (263)
|+|+++..........+.|. ..|+++...+- .. +.++ ....+.++|.++..+...+ +.+++.+.+. +
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 69 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD----YL-NTKE---TAEMAAGFDAVILRGNCFANKQNLDIYKKL---G 69 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC----CS-CSHH---HHHTTTTCSEEEECTTCCBCHHHHHHHHHH---T
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCC----CC-CHHH---HHHHhcCCeEEEEeCCCCCCHHHHhhCccc---C
Confidence 46888754433444455554 35655543221 11 1122 2334678999887542222 2344444432 2
Q ss_pred cEEEEe-Chh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHH----Hhc---c---------------C-------
Q 024727 129 VRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILAS----ELP---K---------------N------- 174 (263)
Q Consensus 129 ~~i~aV-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~----~l~---~---------------~------- 174 (263)
+++++. |-. -.+++++. |+.+.-.|. ++.+.+++ .+. + +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 142 (331)
T 1xdw_A 70 VKYILTRTAGTDHIDKEYAKEL------GFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK 142 (331)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCC
T ss_pred ceEEEEccccccccCHHHHHhC------CcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCcc
Confidence 444442 221 24667888 998766654 44333321 111 1 0
Q ss_pred CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHhCCCCEEEEeCHH
Q 024727 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPS 238 (263)
Q Consensus 175 ~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~l~~~d~vvFtS~s 238 (263)
...|+++.++.-..-...+.+.|+..|++| .+|.+...... ...+.+.+...|+|++.-|.
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~ 208 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATV---IGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPY 208 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEE---EEECCCccHHHHhccccCCHHHHHhhCCEEEEecCC
Confidence 124678888876655667888999999875 45554432210 01123333578999887654
No 491
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=28.25 E-value=60 Score=26.52 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=48.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~~ 120 (263)
..+.|+++|||-...+ ...+++.|.+.|++|...- +.. +..+++...+... ..+..+ +++..+++.+++.
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITG--RTK--EKLEEAKLEIEQF-PGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHCCS-TTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHH
Confidence 4578999999987654 4678999999999876431 110 0112222333221 112222 3688888888876
Q ss_pred HHHc-CCCCcEEEEeC
Q 024727 121 WKEA-GTPNVRIGVVG 135 (263)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (263)
+.+. +.-+.-|.+.|
T Consensus 77 ~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 77 IDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6543 22234444444
No 492
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=28.22 E-value=2.7e+02 Score=23.41 Aligned_cols=74 Identities=8% Similarity=-0.025 Sum_probs=45.3
Q ss_pred CCCCcEEEEEcCCCCchhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHh-CCCCEEEEeCHH----------HHHHH
Q 024727 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPS----------AVRSS 243 (263)
Q Consensus 175 ~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~d~vvFtS~s----------~v~~~ 243 (263)
..+|++|++....-.. +.+.++..|+++..+++-....-..+.+++.+.+ .+..+|++.++. ..+ .
T Consensus 102 ~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~-~ 178 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQ--LYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLE-E 178 (375)
T ss_dssp CCTTCEEEEEESSCTH--HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHH-H
T ss_pred cCCCCEEEEeCCCchh--HHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHH-H
Confidence 3467788887776643 4566778899888777643211112344555545 367788877442 267 7
Q ss_pred HHHhcccc
Q 024727 244 WVNLISDT 251 (263)
Q Consensus 244 ~~~~~~~~ 251 (263)
+.+.++++
T Consensus 179 i~~la~~~ 186 (375)
T 3op7_A 179 LVEIASEV 186 (375)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 77766554
No 493
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=28.20 E-value=61 Score=24.29 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhcc
Q 024727 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (263)
Q Consensus 118 ~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (263)
.+.+.+.+.+-+-+..||+...+.|++. |+.+. .....+.++.++.+.+
T Consensus 69 a~~L~~~gv~vVI~g~IG~~a~~~L~~~------GI~v~-~~~~g~i~eal~~~~~ 117 (136)
T 1o13_A 69 PNFVKEKGAELVIVRGIGRRAIAAFEAM------GVKVI-KGASGTVEEVVNQYLS 117 (136)
T ss_dssp HHHHHHTTCSEEECSCCCHHHHHHHHHT------TCEEE-CSCCSBHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHC------CCEEE-ecCCCCHHHHHHHHHh
Confidence 3344444433333345799999999999 99984 4345677777776653
No 494
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=28.19 E-value=73 Score=25.94 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=41.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--C-CccEEE--EeCHHHHHHHHHH
Q 024727 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--T-IFDWII--ITSPEAGSVFLEA 120 (263)
Q Consensus 47 ~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l--~-~~d~Ii--FTS~~aV~~~~~~ 120 (263)
.+.|++||||-...+ ...+.+.|.+.|++|...- +. + ...+.+.+.+... + ...++. +++..+++.+++.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~--r~-~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFS--RN-R-EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEK 79 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SC-H-HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe--CC-H-HHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHH
Confidence 477999999987654 4678999999999876431 10 0 0011122222111 1 222222 3677888887776
Q ss_pred HHH
Q 024727 121 WKE 123 (263)
Q Consensus 121 l~~ 123 (263)
+.+
T Consensus 80 ~~~ 82 (260)
T 2z1n_A 80 ARD 82 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 495
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.15 E-value=1.7e+02 Score=21.02 Aligned_cols=107 Identities=10% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 024727 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (263)
Q Consensus 50 g~~ILitr~~~-~~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~~~~~l~~~ 124 (263)
+++||+.-... ....+...|++.|+++... .+.++....+ ....+|.|++- ..++.+ ++..+...
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dliild~~l~~~~g~~-~~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF--------ASATEALAGL-SADFAGIVISDIRMPGMDGLA-LFRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHTC-CTTCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHH-HHHHHHhh
Confidence 56788886654 3567888898888765422 2223222233 22468988875 224444 34444444
Q ss_pred CCCCcEEEEe-ChhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccC
Q 024727 125 GTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (263)
Q Consensus 125 ~~~~~~i~aV-G~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (263)
. .+++++++ +.... ..+.+. |.. ++..+..+.+.|...+...
T Consensus 73 ~-~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~L~~~i~~~ 118 (155)
T 1qkk_A 73 D-PDLPMILVTGHGDIPMAVQAIQD------GAY-DFIAKPFAADRLVQSARRA 118 (155)
T ss_dssp C-TTSCEEEEECGGGHHHHHHHHHT------TCC-EEEESSCCHHHHHHHHHHH
T ss_pred C-CCCCEEEEECCCChHHHHHHHhc------CCC-eEEeCCCCHHHHHHHHHHH
Confidence 3 35666655 43332 233344 665 4667778888888777654
No 496
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=28.15 E-value=71 Score=26.75 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=44.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024727 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (263)
Q Consensus 46 ~~l~g~~ILitr~~~~-~~~l~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~~~~~ 120 (263)
..+.|++||||-...+ ...+++.|.+.|++|...-. ... ...+.+.+.+... ..+..+ +++..+++.+++.
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r--~~~-~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYL--DEE-GDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--SCH-HHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC--Cch-HHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHH
Confidence 5688999999988654 46799999999998764311 000 0112223333222 223333 3678888888776
Q ss_pred HHH
Q 024727 121 WKE 123 (263)
Q Consensus 121 l~~ 123 (263)
+.+
T Consensus 119 ~~~ 121 (291)
T 3ijr_A 119 TVR 121 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 497
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=28.12 E-value=90 Score=25.13 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=43.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChhH
Q 024727 65 LIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (263)
Q Consensus 65 l~~~L~~~G~~v~~~p~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~---~~~~i~aVG~~T 138 (263)
+.+.++++|..+.....+......+ .+.+.+.+..-..+|+|+..+-.....+++.+.+.++ +++.++..+...
T Consensus 141 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 219 (276)
T 2h0a_A 141 FQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGHP 219 (276)
T ss_dssp HHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESCCT
T ss_pred HHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 5677888887654222222111000 1234455543346899988888877778888888775 367777776543
No 498
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=28.06 E-value=53 Score=30.69 Aligned_cols=140 Identities=9% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024727 63 GKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (263)
Q Consensus 63 ~~l~~~L~~~G~~v~~~p~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~~~~l~~~~~~~~ 129 (263)
.++.+.|++.|+++..+|=+. +..-...+++. .+++.+.-+..++.......+.+++.. ++
T Consensus 238 ~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei~----~~~~A~~niv~~~~~~~~~A~~Le~~~--Gi 311 (523)
T 3u7q_B 238 RVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMK----DAPNALNTVLLQPWHLEKTKKFVEGTW--KH 311 (523)
T ss_dssp HHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHH----HGGGSSEEEESSGGGCHHHHHHHHHTS--CC
T ss_pred HHHHHHHHHcCCeEEEecCchhcccccccccccccCCCCCHHHHH----HhhcCcEEEEEccchHHHHHHHHHHHh--CC
Q ss_pred EEEEeCh-----hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCCCCCcEEEEEcCCCCchhHHHHHHhCCCee
Q 024727 130 RIGVVGA-----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (263)
Q Consensus 130 ~i~aVG~-----~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~~~~vL~~~g~~~~~~L~~~L~~~G~~v 204 (263)
+++.++. .|.+.|++..+.--.-+...+..+.....+-+....... .|+++.+..+..-.--|...|.+.|+++
T Consensus 312 P~i~~~~PiG~~~T~~~l~~la~~~g~~~~~~i~~er~r~~~~l~d~~~~l-~GKrvaI~gd~~~~~~la~fL~elGm~v 390 (523)
T 3u7q_B 312 EVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWL-HGKRFALWGDPDFVMGLVKFLLELGCEP 390 (523)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHHHHHHTTCEE
T ss_pred CeeecCCcCCHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECCchHHHHHHHHHHHcCCEE
Q ss_pred eEEee
Q 024727 205 VRLNT 209 (263)
Q Consensus 205 ~~~~v 209 (263)
..+.+
T Consensus 391 v~v~~ 395 (523)
T 3u7q_B 391 VHILC 395 (523)
T ss_dssp EEEEE
T ss_pred EEEEe
No 499
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=28.04 E-value=31 Score=29.04 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHhCCCcEEEece--EEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH---------------HHHH
Q 024727 59 RGKNGKLIKALAKHRIDCLELPL--IQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF---------------LEAW 121 (263)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~p~--~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~~---------------~~~l 121 (263)
.++...+.+.|+..|++|.++|. .....+.+.+ .+..||.||+....+-..+ ++.+
T Consensus 32 ~~g~~~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~-------~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l 104 (248)
T 3soz_A 32 EEGADYLLSCLRQGNIDVDYMPAHIVQTRFPQTAE-------ALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLI 104 (248)
T ss_dssp CCCSHHHHHHHTTTTCEEEEEETTHHHHSCCCSHH-------HHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHH
T ss_pred hhhHHHHHHHHhcCCceeEEeCchhhhhhCCCChH-------HHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHH
Q ss_pred HHcCCCCcEEEEeC
Q 024727 122 KEAGTPNVRIGVVG 135 (263)
Q Consensus 122 ~~~~~~~~~i~aVG 135 (263)
.+.-..+.-++.+|
T Consensus 105 ~~~V~~GGgLi~~g 118 (248)
T 3soz_A 105 ADYVAEGGGLLMIG 118 (248)
T ss_dssp HHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEc
No 500
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=27.96 E-value=1.4e+02 Score=25.48 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH----HHHHHHHHHH-cCCCCcEEEEeChh
Q 024727 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA----GSVFLEAWKE-AGTPNVRIGVVGAG 137 (263)
Q Consensus 66 ~~~L~~~G~~v~~~p~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a----V~~~~~~l~~-~~~~~~~i~aVG~~ 137 (263)
.+..++.|++...+-+-+. ...+++.+.+ ++..+.|.|+.--|-- -+..++.+.. ...|+..-+-+|
T Consensus 54 ~k~~~~~Gi~~~~~~lp~~---~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g-- 128 (281)
T 2c2x_A 54 HADCAKVGITSIRRDLPAD---ISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLG-- 128 (281)
T ss_dssp HHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHH--
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHH--
Confidence 4456778988876544211 1234444443 4567889999876521 1122222211 122344333333
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhccCC--CCCcEEEEEcCCCC-chhHHHHHHhC--CCeeeEEeeecc
Q 024727 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKA-SNEIEEGLSNR--GFEVVRLNTYTT 212 (263)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~~~~vL~~~g~~~-~~~L~~~L~~~--G~~v~~~~vY~~ 212 (263)
.|- . |-. .+.| -|+.+.++.+.... ..|++++++....- ...+...|.+. |++|.-+. ++
T Consensus 129 ---~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h--~~ 193 (281)
T 2c2x_A 129 ---RLV-L------GTP-APLP--CTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCH--TG 193 (281)
T ss_dssp ---HHH-H------TCC-CCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEEC--TT
T ss_pred ---HHh-C------CCC-CCCC--ChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEE--Cc
Confidence 332 2 322 2334 36777777777653 47899998887752 45577788888 77775432 11
Q ss_pred ccCCCChHHHHHHhCCCCEEEEeCH
Q 024727 213 EPVHHVDQTVLKQALSIPVVAVASP 237 (263)
Q Consensus 213 ~~~~~~~~~~~~~l~~~d~vvFtS~ 237 (263)
. . ++.+.+...|+|+-+.+
T Consensus 194 t---~---~L~~~~~~ADIVI~Avg 212 (281)
T 2c2x_A 194 T---R---DLPALTRQADIVVAAVG 212 (281)
T ss_dssp C---S---CHHHHHTTCSEEEECSC
T ss_pred h---h---HHHHHHhhCCEEEECCC
Confidence 1 1 24444578998887766
Done!