Query 024728
Match_columns 263
No_of_seqs 118 out of 141
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 13:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 92.8 0.36 1.2E-05 47.3 8.8 103 137-251 7-113 (528)
2 1lw3_A Myotubularin-related pr 91.4 0.59 2E-05 47.2 8.7 122 117-251 60-185 (657)
3 2yf0_A Myotubularin-related pr 78.0 9.3 0.00032 37.4 9.2 81 153-251 18-98 (512)
4 2hth_B Vacuolar protein sortin 74.2 2.5 8.7E-05 34.4 3.6 51 157-219 35-85 (140)
5 2cay_A VPS36 PH domain, vacuol 56.0 8.1 0.00028 31.7 3.2 48 157-215 48-95 (145)
6 1vcb_B Protein (elongin C); tu 38.3 11 0.00038 29.3 1.3 20 212-231 12-31 (112)
7 2d9z_A Protein kinase C, NU ty 37.3 19 0.00066 29.6 2.6 65 188-255 43-125 (129)
8 1hv2_A Elongin C, ELC1; protei 36.6 16 0.00055 27.5 1.9 17 215-231 2-18 (99)
9 2fnj_C Transcription elongatio 32.7 16 0.00054 27.3 1.3 15 217-231 1-15 (96)
10 1zyi_A Methylosome subunit pic 31.6 50 0.0017 28.0 4.3 28 149-177 32-59 (171)
11 2coa_A Protein kinase C, D2 ty 30.4 29 0.00098 28.5 2.5 63 188-254 43-120 (125)
12 4ag4_A Epithelial discoidin do 28.9 32 0.0011 31.9 2.9 59 143-201 250-315 (351)
13 4ajy_C Transcription elongatio 27.6 21 0.00073 26.3 1.2 14 218-231 3-16 (97)
14 1eaz_A Tandem PH domain contai 25.4 1.3E+02 0.0043 21.5 5.1 59 195-254 55-116 (125)
15 2aze_B Transcription factor E2 21.7 31 0.001 27.0 1.1 15 147-161 85-99 (106)
16 1zu2_A Mitochondrial import re 21.4 27 0.00093 28.7 0.8 20 231-250 101-120 (158)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=92.77 E-value=0.36 Score=47.35 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=63.1
Q ss_pred ccCCccchhccccce--eeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCc
Q 024728 137 FATDPNEKLKKTFAC--YLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENA 214 (263)
Q Consensus 137 F~v~p~EkLlKa~aC--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nP 214 (263)
|...|||.++..-.- |+..-.|++.|+|||++.|+.|++... + . .+.+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~-~----~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P----PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------C-c----cEEEEeeccceEEEEEcCCCCcC
Confidence 567899999865211 555557899999999999999999521 1 1 24578999888777643211111
Q ss_pred C--CceEEEEEecCceeeeeecccHHHHHHHHHHHHhhh
Q 024728 215 S--DKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY 251 (263)
Q Consensus 215 s--eKYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~Als~~ 251 (263)
. --.|+|..-|- .++=.+|-.=+...+.+-++|+..
T Consensus 76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~~ 113 (528)
T 1zsq_A 76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMKY 113 (528)
T ss_dssp STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHHH
Confidence 1 12477666654 444445654333344455666554
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=91.45 E-value=0.59 Score=47.18 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred hhhhhHHHhccCcchhhhhhccCCccchhccccc-e-eeecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEE
Q 024728 117 VNLTAKAITEGGFESLFKQIFATDPNEKLKKTFA-C-YLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYK 194 (263)
Q Consensus 117 lslGaKil~eGG~ekiFkQ~F~v~p~EkLlKa~a-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYK 194 (263)
+.+.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|++... + . .+.
T Consensus 60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~------~-~----~~~ 127 (657)
T 1lw3_A 60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P----PFV 127 (657)
T ss_dssp ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S----CEE
T ss_pred hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC------C-c----ceE
Confidence 34444455554322 1123466799999995421 1 444446899999999999999998521 1 1 245
Q ss_pred EeeecCccccccccccccCcCC--ceEEEEEecCceeeeeecccHHHHHHHHHHHHhhh
Q 024728 195 VMIPLANISSVNPVTLKENASD--KYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY 251 (263)
Q Consensus 195 VvIPL~kik~Vnps~n~~nPse--KYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~Als~~ 251 (263)
+-|||..|..|..........+ -.|+|..-| +.++=.+|-.=+...+.+-++|...
T Consensus 128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKD-fR~~~f~f~~~~~~~~~v~~~L~~~ 185 (657)
T 1lw3_A 128 LDASLGVINRVEKIGGASSRGENSYGLETVCKD-IRNLRFAHKPEGRTRRSIFENLMKY 185 (657)
T ss_dssp EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT-TEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred EEecccceEEEEecCCCcccCCCCceEEEEecC-CcEEEEEeCCccchHHHHHHHHHHH
Confidence 6899988888775322111111 236666655 4444455654333234444555543
No 3
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=78.03 E-value=9.3 Score=37.39 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=44.7
Q ss_pred eecCCCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCcCCceEEEEEecCceeeee
Q 024728 153 LSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYMKIVTVEGHEFWFM 232 (263)
Q Consensus 153 LSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFM 232 (263)
++.+-+++.|+|||++.|+-|.+|.. +. +.||+..|.+|.-.... .....|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------Cc------eEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence 45567899999999999999999532 22 45677777777532111 112357777776555444
Q ss_pred ecccHHHHHHHHHHHHhhh
Q 024728 233 GFVNFEKATNHLLNSLSEY 251 (263)
Q Consensus 233 GFvnY~KA~k~Lq~Als~~ 251 (263)
.|-.-+.+ +.+-++|.+.
T Consensus 81 ~f~~~~~~-~~v~~sL~~~ 98 (512)
T 2yf0_A 81 IVPRERDC-HDIYNSLLQL 98 (512)
T ss_dssp EESCHHHH-HHHHHHHHHH
T ss_pred EeCChHHH-HHHHHHHHhh
Confidence 45554433 3333455443
No 4
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=74.24 E-value=2.5 Score=34.37 Aligned_cols=51 Identities=25% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCcCCceE
Q 024728 157 TGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENASDKYM 219 (263)
Q Consensus 157 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI 219 (263)
+.---|+|||+|.||.|-.+.. + ..-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-----~-------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-----H-------ECCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-----C-------SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-----C-------ceEEEEEhHHeeeeeeeccccccCceEE
Confidence 4668899999999999965432 0 1446788888887777666655555554
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=56.01 E-value=8.1 Score=31.73 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCcceeeEEEecceEEEeeCCCeeeeCCCCCeeeeEEEEeeecCccccccccccccCcC
Q 024728 157 TGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISSVNPVTLKENAS 215 (263)
Q Consensus 157 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~Gq~~~~yYKVvIPL~kik~Vnps~n~~nPs 215 (263)
.+--.|.|||+|.||-|-.+.+ | . -.-+.|||..|+.+...+..-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~-----~--~----~~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAK-----P--T----QNSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSC-----H--H----HHCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCC-----C--c----ceEEEeEhHheeeeeEEcCccccC
Confidence 5778999999999999975432 0 0 133567777777776655554443
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=38.34 E-value=11 Score=29.28 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=13.9
Q ss_pred cCcCCceEEEEEecCceeee
Q 024728 212 ENASDKYMKIVTVEGHEFWF 231 (263)
Q Consensus 212 ~nPseKYIqIVTvD~~eFWF 231 (263)
+-|..+||.++|-||++|-.
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34567999999999999964
No 7
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.33 E-value=19 Score=29.65 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=42.3
Q ss_pred eeeeEEEEeeecCccccccccccccC--cCC--ceEEEEEecCceeeeeeccc-----H---------HHHHHHHHHHHh
Q 024728 188 EAWSYYKVMIPLANISSVNPVTLKEN--ASD--KYMKIVTVEGHEFWFMGFVN-----F---------EKATNHLLNSLS 249 (263)
Q Consensus 188 ~~~~yYKVvIPL~kik~Vnps~n~~n--Pse--KYIqIVTvD~~eFWFMGFvn-----Y---------~KA~k~Lq~Als 249 (263)
...-|||. |||.+|-.|.+..+-.. +.. -+.||+| .+-.|. +|==. . ..-.+-.+.||+
T Consensus 43 ~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIr 119 (129)
T 2d9z_A 43 SGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VGENNGDSSHNPVLAATGVGLDVAQSWEKAIR 119 (129)
T ss_dssp SCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-ECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHH
T ss_pred CCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-EccCCCCCCCCccccccccchHHHHHHHHHHH
Confidence 33458888 99999999999876653 222 6799998 677764 44200 1 234455667777
Q ss_pred hhhhcC
Q 024728 250 EYRATG 255 (263)
Q Consensus 250 ~~~~~~ 255 (263)
++-++.
T Consensus 120 qALmP~ 125 (129)
T 2d9z_A 120 QALMSG 125 (129)
T ss_dssp HHHHHS
T ss_pred HhccCC
Confidence 766554
No 8
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=36.61 E-value=16 Score=27.53 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=14.7
Q ss_pred CCceEEEEEecCceeee
Q 024728 215 SDKYMKIVTVEGHEFWF 231 (263)
Q Consensus 215 seKYIqIVTvD~~eFWF 231 (263)
+.+||.++|-||++|-.
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 36899999999999964
No 9
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=32.70 E-value=16 Score=27.34 Aligned_cols=15 Identities=40% Similarity=0.928 Sum_probs=13.5
Q ss_pred ceEEEEEecCceeee
Q 024728 217 KYMKIVTVEGHEFWF 231 (263)
Q Consensus 217 KYIqIVTvD~~eFWF 231 (263)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 10
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=31.60 E-value=50 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=22.1
Q ss_pred cceeeecCCCcceeeEEEecceEEEeeCC
Q 024728 149 FACYLSTTTGPVAGTLYLSTARVAFCSDR 177 (263)
Q Consensus 149 ~aCYLSTtaGPVaG~LfiSt~kvAFcSdr 177 (263)
-++||-.. ..-.|+|||++.||.+-|+.
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~ 59 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGS 59 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCC
Confidence 56788654 33469999999999999875
No 11
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.38 E-value=29 Score=28.45 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=41.1
Q ss_pred eeeeEEEEeeecCccccccccccccC--c--CCceEEEEEecCceeeeeecccH-----------HHHHHHHHHHHhhhh
Q 024728 188 EAWSYYKVMIPLANISSVNPVTLKEN--A--SDKYMKIVTVEGHEFWFMGFVNF-----------EKATNHLLNSLSEYR 252 (263)
Q Consensus 188 ~~~~yYKVvIPL~kik~Vnps~n~~n--P--seKYIqIVTvD~~eFWFMGFvnY-----------~KA~k~Lq~Als~~~ 252 (263)
...-|||. |||.+|-.|.+..+... + ..-+.||+| .+-.|. +|= +. ..-.+-.+.||+++-
T Consensus 43 ~~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy-Vg~-~~~~~p~~~sg~g~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 43 TTNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF-VGE-MPGGTPGGPSGQGAEAARGWETAIRQAL 118 (125)
T ss_dssp SCSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC-EEC-CSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred CCCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE-Ecc-CCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence 33458887 99999999999876553 2 226799999 566664 441 00 023555667777776
Q ss_pred hc
Q 024728 253 AT 254 (263)
Q Consensus 253 ~~ 254 (263)
++
T Consensus 119 mP 120 (125)
T 2coa_A 119 MS 120 (125)
T ss_dssp GG
T ss_pred cC
Confidence 55
No 12
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=28.85 E-value=32 Score=31.88 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=44.9
Q ss_pred chhccccceeeecCCCcceeeEEEecceEEEeeC-------CCeeeeCCCCCeeeeEEEEeeecCc
Q 024728 143 EKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSD-------RPLCFTAPSGQEAWSYYKVMIPLAN 201 (263)
Q Consensus 143 EkLlKa~aCYLSTtaGPVaG~LfiSt~kvAFcSd-------rpl~~~sp~Gq~~~~yYKVvIPL~k 201 (263)
+++++=.+|.|-+..=.--|+-.-|..++=|+++ .|+.|+...-...++-+-|.|||++
T Consensus 250 d~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 250 DRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred CcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 4567778888888887777887788899999988 3899886543444455669999983
No 13
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=27.63 E-value=21 Score=26.31 Aligned_cols=14 Identities=43% Similarity=1.028 Sum_probs=12.4
Q ss_pred eEEEEEecCceeee
Q 024728 218 YMKIVTVEGHEFWF 231 (263)
Q Consensus 218 YIqIVTvD~~eFWF 231 (263)
||.+++.||++|--
T Consensus 3 ~v~L~SsDg~~F~v 16 (97)
T 4ajy_C 3 YVKLISSDGHEFIV 16 (97)
T ss_dssp EEEEECTTCCEEEE
T ss_pred EEEEEecCCcEEEe
Confidence 89999999999853
No 14
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=25.41 E-value=1.3e+02 Score=21.53 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=32.8
Q ss_pred EeeecCccccccccccccCcCCc-eEEEEEecCceeeeeec--ccHHHHHHHHHHHHhhhhhc
Q 024728 195 VMIPLANISSVNPVTLKENASDK-YMKIVTVEGHEFWFMGF--VNFEKATNHLLNSLSEYRAT 254 (263)
Q Consensus 195 VvIPL~kik~Vnps~n~~nPseK-YIqIVTvD~~eFWFMGF--vnY~KA~k~Lq~Als~~~~~ 254 (263)
=+|+|..+..|...........+ -++|+| .+..|.|..= -..+.=+..|++|+...+..
T Consensus 55 g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~W~~al~~~i~~~~~~ 116 (125)
T 1eaz_A 55 RVIPLKEVHKVQECKQSDIMMRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVAQRGP 116 (125)
T ss_dssp EEEEGGGCCEEEECTTHHHHTCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHHTC--
T ss_pred eEEEcccceEEeeccccccCCcCCEEEEEe-CCcEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence 46888888777654433333333 456664 5667776432 23344456677777655443
No 15
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.68 E-value=31 Score=27.04 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.6
Q ss_pred cccceeeecCCCcce
Q 024728 147 KTFACYLSTTTGPVA 161 (263)
Q Consensus 147 Ka~aCYLSTtaGPVa 161 (263)
+.|++||.++.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 589999999999984
No 16
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=21.35 E-value=27 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.9
Q ss_pred eeecccHHHHHHHHHHHHhh
Q 024728 231 FMGFVNFEKATNHLLNSLSE 250 (263)
Q Consensus 231 FMGFvnY~KA~k~Lq~Als~ 250 (263)
-.+|=+|++|++++++||..
T Consensus 101 ~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 101 TEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHh
Confidence 45567999999999999975
Done!