BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024730
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GEE3|UREE_STAAR Urease accessory protein UreE OS=Staphylococcus aureus (strain
MRSA252) GN=ureE PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIVVDVNSEDLLVIQPR 86
>sp|Q7A065|UREE_STAAW Urease accessory protein UreE OS=Staphylococcus aureus (strain MW2)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A8Z388|UREE_STAAT Urease accessory protein UreE OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q6G731|UREE_STAAS Urease accessory protein UreE OS=Staphylococcus aureus (strain
MSSA476) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q7A429|UREE_STAAN Urease accessory protein UreE OS=Staphylococcus aureus (strain
N315) GN=ureE PE=1 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q99RY1|UREE_STAAM Urease accessory protein UreE OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A6QJD1|UREE_STAAE Urease accessory protein UreE OS=Staphylococcus aureus (strain
Newman) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q5HDR7|UREE_STAAC Urease accessory protein UreE OS=Staphylococcus aureus (strain COL)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q2YYQ5|UREE_STAAB Urease accessory protein UreE OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A5IV72|UREE_STAA9 Urease accessory protein UreE OS=Staphylococcus aureus (strain JH9)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q2G2K8|UREE_STAA8 Urease accessory protein UreE OS=Staphylococcus aureus (strain NCTC
8325) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q2FEK2|UREE_STAA3 Urease accessory protein UreE OS=Staphylococcus aureus (strain
USA300) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A6U415|UREE_STAA2 Urease accessory protein UreE OS=Staphylococcus aureus (strain JH1)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A7X5M4|UREE_STAA1 Urease accessory protein UreE OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A9KHK4|GLRP_CLOPH D-galactosyl-beta-1->4-L-rhamnose phosphorylase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=Cphy_1920 PE=1 SV=1
Length = 722
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 98 KAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEE 157
+ A++ + L+S+ F +++LI ++SLSG P DV + + + +G +EE
Sbjct: 452 RIAVLHSWGSLRSWTLSGHFHETYMHDLIHINESLSGLPFDV---KFINFEDINQGALEE 508
Query: 158 VSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQ 198
V D+V I AG + G D E I L R + +
Sbjct: 509 V---DVV---INAGIMGSAWTGGQAWEDQEIIERLTRFVYE 543
>sp|Q8CNC8|UREE_STAES Urease accessory protein UreE OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=ureE PE=3 SV=1
Length = 150
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
E+G RL + L YG +L D++N +I +D S DL + PR
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYQDDTN---MIIVDVNSEDLLVIKPR 86
>sp|Q5HLW0|UREE_STAEQ Urease accessory protein UreE OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=ureE PE=3 SV=1
Length = 150
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
E+G RL + L YG +L D++N +I +D S DL + PR
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYQDDTN---MIIVDVNSEDLLVIKPR 86
>sp|B8DGL7|Y2435_LISMH UPF0145 protein LMHCC_2435 OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=LMHCC_2435 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|P0A4Q9|Y240_LISIN UPF0145 protein lin0240 OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=lin0240 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q724K5|Y219_LISMF UPF0145 protein LMOf2365_0219 OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=LMOf2365_0219 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|P0A4Q8|Y208_LISMO UPF0145 protein lmo0208 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=lmo0208 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|C1KYE1|Y206_LISMC UPF0145 protein Lm4b_00206 OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=Lm4b_00206 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|B3QSD5|RECA_CHLT3 Protein RecA OS=Chloroherpeton thalassium (strain ATCC 35110 /
GB-78) GN=recA PE=3 SV=1
Length = 357
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 15 GLARFVEPSHAHLHSLASKAACGFLSLPIAPPSESEE-----ERIVREFAVLIDANQDYL 69
G+A FV+ HA S A K SL I+ P E+ E +VR AV I
Sbjct: 101 GIAAFVDAEHAFDQSYARKLGIDIKSLLISQPESGEQALSITETLVRSGAVDIIVVDSVA 160
Query: 70 SGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSR-LKSFGDKLGFATLQLNELIET 128
+ + + EL+ E + D MGL+A L++ R L K + +N+L +
Sbjct: 161 ALVPQ--AELEGE-------MGDSQMGLQARLMSQALRKLTGAISKSNCVAIFINQLRDK 211
Query: 129 SDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161
+ GSP + LK R + +++Q
Sbjct: 212 IGVMYGSPETTTGGKALKFYASVRLDIRKIAQI 244
>sp|Q4A0J6|UREE_STAS1 Urease accessory protein UreE OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=ureE PE=3 SV=1
Length = 150
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
E+G RL + L YG +L D+ N +I +D S DL + PR
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYKDDKN---MIVVDVNSEDLLVIKPR 86
>sp|Q8VMY3|Y208_LISIV UPF0145 protein OS=Listeria ivanovii PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIKEMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q8VMW4|Y194_LISSS UPF0145 protein lse_0194 OS=Listeria seeligeri serovar 1/2b (strain
ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954) GN=vclB
PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 227
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIKEMEQRAQDIGANAVIGVDIDY-EVLGADNG 92
Query: 228 NLSVLIS 234
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q11QM8|RECA_CYTH3 Protein RecA OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469) GN=recA PE=3 SV=1
Length = 355
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 21/156 (13%)
Query: 15 GLARFVEPSHAHLHSLASKAACGFLSLPIAPPSESEE-----ERIVREFA---VLIDANQ 66
G+A F++ HA + A K +L I+ P E+ E ++R A ++ID+
Sbjct: 96 GIAAFIDAEHAFDKTYAEKLGIDTTNLLISQPDNGEQALEIAEHLIRSGAIDIIVIDSVA 155
Query: 67 DYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSR-LKSFGDKLGFATLQLNEL 125
+ E++ E + D MGL+A L++ R L +K G + +N+L
Sbjct: 156 ALVP-----KAEIEGE-------MGDSKMGLQARLMSQALRKLTGAINKTGCCCIFINQL 203
Query: 126 IETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161
E + G+P LK R + + Q
Sbjct: 204 REKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQI 239
>sp|O51053|QUEA_BORBU S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=queA PE=3 SV=2
Length = 343
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 160 QFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMA-QPATEVGSRLHLSVVLSY 218
++D + +H+GAG K H++ + L++ + + Q A +G R+ LS+V +
Sbjct: 194 EYDFITLHVGAGTFLPVRSKKVEEHNMHFETFLIKDFVAVRLQNAKLLGKRI-LSIVTTT 252
Query: 219 GQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 254
+ LE+ N ++S++L ++P ++Y K
Sbjct: 253 LRALESSYDNNLKKFKTGQQSTNL-FIYPGKNYCFK 287
>sp|B9DLY1|UREE_STACT Urease accessory protein UreE OS=Staphylococcus carnosus (strain
TM300) GN=ureE PE=3 SV=1
Length = 150
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 203 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248
E+G RL V L YG +L D+ N +I +D S D+ + PR
Sbjct: 44 GNEIGIRLKNPVDLEYGDILYQDDHN---MIVVDVNSEDILVIQPR 86
>sp|P52686|SDSB_PSES9 SDS degradation transcriptional activation protein OS=Pseudomonas
sp. (strain ATCC 19151) GN=sdsB PE=4 SV=1
Length = 306
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 107 RLKSFGDKLGFAT---LQLNELIETSDSLSGSPIDVVASEL----LKLLGLQRGKMEEVS 159
+L G LG + L L+ SD LS +P+DVVA E+ L LL L G + + S
Sbjct: 211 QLAESGQPLGIECDNFMALKALVAESDVLSMAPLDVVAEEIEAGRLALLELAPGLLSQRS 270
Query: 160 QFDLV 164
+ LV
Sbjct: 271 AYGLV 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,645,679
Number of Sequences: 539616
Number of extensions: 3703637
Number of successful extensions: 7922
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 7916
Number of HSP's gapped (non-prelim): 48
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)