Query 024730
Match_columns 263
No_of_seqs 40 out of 42
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3635 Predicted phosphoglyce 99.9 9.6E-28 2.1E-32 228.6 7.6 102 82-198 233-335 (408)
2 PRK04024 cofactor-independent 99.9 3.2E-21 7E-26 184.3 13.1 105 82-201 230-335 (412)
3 PRK04135 cofactor-independent 99.8 8.4E-21 1.8E-25 181.5 7.6 96 81-198 222-318 (395)
4 PRK04200 cofactor-independent 99.8 5E-20 1.1E-24 175.0 7.8 104 82-200 220-325 (395)
5 TIGR02535 hyp_Hser_kinase prop 99.8 1.7E-19 3.7E-24 171.5 9.0 105 82-201 221-327 (396)
6 TIGR00306 apgM 2,3-bisphosphog 99.8 1.5E-19 3.2E-24 172.1 8.0 105 82-201 224-329 (396)
7 PF01676 Metalloenzyme: Metall 99.5 6.1E-14 1.3E-18 124.4 6.8 180 7-226 2-202 (252)
8 PRK12383 putative mutase; Prov 98.8 6.9E-09 1.5E-13 100.4 7.1 99 81-203 231-330 (406)
9 PRK05434 phosphoglyceromutase; 98.3 1.2E-06 2.6E-11 87.0 6.9 86 83-202 344-430 (507)
10 TIGR01696 deoB phosphopentomut 97.6 0.00015 3.3E-09 70.2 7.0 75 118-203 238-314 (381)
11 PLN02538 2,3-bisphosphoglycera 97.5 0.00014 2.9E-09 73.6 6.0 74 134-221 402-477 (558)
12 PRK05362 phosphopentomutase; P 97.3 0.00061 1.3E-08 66.2 7.7 59 136-202 260-321 (394)
13 TIGR01307 pgm_bpd_ind 2,3-bisp 96.6 0.0039 8.4E-08 62.5 6.4 60 135-202 364-424 (501)
14 cd00016 alkPPc Alkaline phosph 93.8 0.12 2.6E-06 49.9 5.8 59 134-201 230-291 (384)
15 KOG4513 Phosphoglycerate mutas 84.7 1.7 3.7E-05 43.8 5.3 79 136-227 388-467 (531)
16 COG0696 GpmI Phosphoglyceromut 83.2 2.5 5.4E-05 43.1 5.8 87 127-226 363-450 (509)
17 PF01663 Phosphodiest: Type I 77.0 3.1 6.7E-05 36.9 3.8 66 157-223 180-248 (365)
18 COG1015 DeoB Phosphopentomutas 58.2 21 0.00044 35.8 5.4 84 108-204 240-326 (397)
19 PF12964 DUF3853: Protein of u 57.0 9.6 0.00021 31.3 2.5 55 52-126 12-66 (96)
20 PF00448 SRP54: SRP54-type pro 56.3 34 0.00074 29.9 6.0 102 104-239 44-154 (196)
21 PRK04135 cofactor-independent 54.7 11 0.00025 37.2 3.1 37 4-40 6-52 (395)
22 TIGR02535 hyp_Hser_kinase prop 44.6 19 0.00041 35.3 2.8 35 7-41 2-47 (396)
23 cd00758 MoCF_BD MoCF_BD: molyb 43.8 33 0.00073 27.8 3.7 50 103-171 19-68 (133)
24 KOG2125 Glycosylphosphatidylin 42.2 16 0.00035 39.1 2.0 100 158-262 189-294 (760)
25 KOG0638 4-hydroxyphenylpyruvat 40.3 87 0.0019 31.2 6.5 98 105-223 29-143 (381)
26 COG1436 NtpG Archaeal/vacuolar 38.7 95 0.0021 25.5 5.6 68 95-197 1-68 (104)
27 smart00098 alkPPc Alkaline pho 37.9 58 0.0013 32.5 5.0 78 134-218 233-316 (419)
28 PF10137 TIR-like: Predicted n 37.5 1E+02 0.0023 25.7 5.8 103 107-248 15-117 (125)
29 PF00994 MoCF_biosynth: Probab 37.1 32 0.0007 27.9 2.7 48 103-168 17-64 (144)
30 cd01475 vWA_Matrilin VWA_Matri 36.5 55 0.0012 28.4 4.2 78 160-250 2-79 (224)
31 TIGR03584 PseF pseudaminic aci 34.1 1.9E+02 0.0042 25.5 7.2 77 100-198 44-122 (222)
32 PF00702 Hydrolase: haloacid d 31.9 56 0.0012 26.7 3.3 52 95-153 142-196 (215)
33 COG2710 NifD Nitrogenase molyb 31.0 19 0.00042 35.5 0.5 113 49-171 269-394 (456)
34 TIGR01284 alt_nitrog_alph nitr 30.9 20 0.00044 35.3 0.6 70 49-122 282-355 (457)
35 TIGR00177 molyb_syn molybdenum 29.9 75 0.0016 26.2 3.8 48 102-167 26-73 (144)
36 PRK12723 flagellar biosynthesi 29.6 3.4E+02 0.0074 26.7 8.7 106 96-239 206-326 (388)
37 PRK07571 bidirectional hydroge 29.0 1.8E+02 0.0038 25.7 6.0 61 136-196 103-167 (169)
38 PRK03011 butyrate kinase; Prov 28.9 1.3E+02 0.0028 29.2 5.6 30 136-171 157-186 (358)
39 PRK04200 cofactor-independent 28.8 47 0.001 32.5 2.8 35 7-41 2-47 (395)
40 cd00886 MogA_MoaB MogA_MoaB fa 28.6 77 0.0017 26.4 3.6 49 103-167 20-68 (152)
41 smart00852 MoCF_biosynth Proba 28.3 86 0.0019 25.2 3.8 50 103-171 18-67 (135)
42 COG1608 Predicted archaeal kin 28.0 2.3E+02 0.005 27.0 7.0 119 114-247 6-162 (252)
43 PRK01395 V-type ATP synthase s 27.6 1.2E+02 0.0027 24.4 4.5 53 95-169 2-54 (104)
44 PRK14974 cell division protein 27.5 3.2E+02 0.0069 26.4 8.0 79 96-202 168-253 (336)
45 COG1024 CaiD Enoyl-CoA hydrata 27.4 72 0.0016 28.4 3.4 53 36-119 15-68 (257)
46 PF03710 GlnE: Glutamate-ammon 27.2 87 0.0019 28.4 4.0 35 159-199 145-180 (247)
47 PRK04024 cofactor-independent 27.0 51 0.0011 32.6 2.6 34 7-40 4-48 (412)
48 PRK13011 formyltetrahydrofolat 26.5 1.2E+02 0.0026 28.5 4.8 25 99-123 120-144 (286)
49 COG1419 FlhF Flagellar GTP-bin 26.1 94 0.002 31.3 4.3 113 87-240 220-353 (407)
50 COG1861 SpsF Spore coat polysa 26.1 2.3E+02 0.005 26.9 6.6 62 107-199 59-120 (241)
51 cd00885 cinA Competence-damage 25.4 89 0.0019 26.9 3.5 50 103-171 19-68 (170)
52 TIGR00306 apgM 2,3-bisphosphog 25.0 47 0.001 32.6 2.0 33 9-41 1-44 (396)
53 TIGR00655 PurU formyltetrahydr 24.9 1.3E+02 0.0028 28.2 4.7 42 83-124 94-140 (280)
54 PF02938 GAD: GAD domain; Int 24.2 1.4E+02 0.003 23.2 4.1 47 116-171 42-88 (95)
55 cd00229 SGNH_hydrolase SGNH_hy 23.6 1.3E+02 0.0028 22.5 3.7 41 157-198 62-102 (187)
56 TIGR02707 butyr_kinase butyrat 23.5 1.9E+02 0.0041 27.9 5.7 77 52-171 108-184 (351)
57 PF00356 LacI: Bacterial regul 23.3 34 0.00074 24.0 0.5 43 108-151 2-44 (46)
58 PLN02917 CMP-KDO synthetase 23.1 3.3E+02 0.0071 25.3 7.0 91 101-222 93-188 (293)
59 PRK03957 V-type ATP synthase s 21.7 1.8E+02 0.0039 23.1 4.4 52 97-169 1-53 (100)
60 cd01835 SGNH_hydrolase_like_3 21.5 1.9E+02 0.0042 23.7 4.7 43 159-202 68-110 (193)
61 cd01834 SGNH_hydrolase_like_2 20.9 1.3E+02 0.0029 24.0 3.5 40 159-198 60-100 (191)
62 PRK03673 hypothetical protein; 20.8 1E+02 0.0022 30.5 3.3 50 102-169 20-69 (396)
63 PRK06027 purU formyltetrahydro 20.5 2E+02 0.0044 26.8 5.1 68 84-167 100-172 (286)
64 PF08745 UPF0278: UPF0278 fami 20.4 51 0.0011 30.4 1.1 43 83-125 132-195 (205)
No 1
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.6e-28 Score=228.60 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=99.9
Q ss_pred cCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcc
Q 024730 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (263)
Q Consensus 82 ~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~f 161 (263)
.+-|.+|+|+||| |||||||++++++||+|+.+||+|++++++||+.+| +|++++++|+++| ++|
T Consensus 233 g~~P~ip~F~e~y-glk~a~Ia~~~l~KGlar~~GmDvi~vegatG~~dt----n~~~k~k~a~eal----------~~y 297 (408)
T COG3635 233 GRYPKIPSFQERY-GLKGACIAAVPLIKGLARLVGMDVIEVEGATGYIDT----NYRGKAKAAIEAL----------KEY 297 (408)
T ss_pred CCCCCCCCHhHhh-CcceEEEEecHHHHhHHHHhCCceeecccccCccCc----cHHHHHHHHHHHH----------hhC
Confidence 5668899999999 999999999999999999999999999999999999 9999999999999 999
Q ss_pred cEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHH
Q 024730 162 DLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQ 198 (263)
Q Consensus 162 DlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~ 198 (263)
||||||||++|+++|||+++.|+. ||+||++++++++
T Consensus 298 Dfv~vhik~tDeagHdG~~e~Kv~~IE~iD~~i~pll~ 335 (408)
T COG3635 298 DFVFVHIKATDEAGHDGDFEGKVRVIEDIDKAIGPLLD 335 (408)
T ss_pred CEEEEEeccCccccCCCCHHHhHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999 9999999999997
No 2
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.86 E-value=3.2e-21 Score=184.27 Aligned_cols=105 Identities=20% Similarity=0.355 Sum_probs=101.3
Q ss_pred cCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcc
Q 024730 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (263)
Q Consensus 82 ~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~f 161 (263)
.+.|.+|+|.||| |||+|+|+++++++|+|+.+||+|+.++++||..+| ++.+++++++++| ++|
T Consensus 230 G~~p~lp~f~er~-gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~t----~~~~k~~~~~~~l----------~~~ 294 (412)
T PRK04024 230 GEVPEIPKFTEKY-GLKAACVAGTALIKGIARMVGMDVITVEGATGGKDT----NYMAKAKAAVELL----------KEY 294 (412)
T ss_pred CCCCCCCCHHHhc-CCceEEEeChHHHHHHHHHcCCceeccCCCcCCCCC----CHHHHHHHHHHHh----------ccC
Confidence 4578899999999 999999999999999999999999999999999999 9999999999999 689
Q ss_pred cEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcC
Q 024730 162 DLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ 201 (263)
Q Consensus 162 DlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~ 201 (263)
||||+|++++|.++|+|+++.|+. ||+||+.++.|++..+
T Consensus 295 Dfv~vh~~~~D~~GH~gd~~~k~~aiE~iD~~l~~il~~l~ 335 (412)
T PRK04024 295 DFVLLNIKGTDEAGHDGDFEGKVEVIEKIDKMLGYILDNLD 335 (412)
T ss_pred CEEEEeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 9999999999998874
No 3
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.83 E-value=8.4e-21 Score=181.45 Aligned_cols=96 Identities=19% Similarity=0.343 Sum_probs=91.4
Q ss_pred ccCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCc
Q 024730 81 WEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQ 160 (263)
Q Consensus 81 ~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~ 160 (263)
..+.|.+|+|+||| |||+|+|+++++++|+|+.+||+|+. +|+ ++.+++++++++| ++
T Consensus 222 ~G~~p~lp~F~e~~-Glkga~Ia~~~l~kGi~~~~Gm~~i~-~ga----------~~~~k~~~a~~~l----------~~ 279 (395)
T PRK04135 222 FSKKPDFPSFEEVY-KLKAAAIASYPMYRGLAKLVGMDVLP-TGQ----------TLEDEIKTLKENW----------ND 279 (395)
T ss_pred CCCCCCCCCHHHHh-CCceEEEehhHHHHHHHHHcCCeecC-CCC----------CHHHHHHHHHHHH----------hc
Confidence 36778999999999 99999999999999999999999999 875 8999999999999 89
Q ss_pred ccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHH
Q 024730 161 FDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQ 198 (263)
Q Consensus 161 fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~ 198 (263)
|||||+|++++|+++|+|+++.|++ ||+||+.+.++++
T Consensus 280 ~DfV~vhvk~~DeaGH~gd~~~Kv~~IE~iD~~l~~ll~ 318 (395)
T PRK04135 280 YDFFFLHVKKTDSYGEDGNFEEKVKVIEEVDALLPEILA 318 (395)
T ss_pred CCEEEEEeccCchhhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 9999999999883
No 4
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.80 E-value=5e-20 Score=175.00 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=99.0
Q ss_pred cCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcc
Q 024730 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (263)
Q Consensus 82 ~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~f 161 (263)
.+.|.+|+|.||| |||+|+|+++++++|+|+.+||+|+.++++||..+| +|.+|+++++++| ++|
T Consensus 220 G~~p~~p~f~e~~-gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt----~~~~k~~~a~~~l----------~~~ 284 (395)
T PRK04200 220 GYAPKMPSFKEKY-GLKGAVISAVDLLKGIGIYAGLDVIEVPGATGYLDT----NYEGKAEAALEAL----------KTH 284 (395)
T ss_pred CCCCCCCCHHHhc-CCceEEEeccHHHHHHHHHcCCccccCCCccccccc----chHHHHHHHHHHh----------ccC
Confidence 4578899999999 999999999999999999999999999999999999 9999999999999 789
Q ss_pred cEEEEeeccCCccCcCCCcccccC-hHHHHHH-HHHHHHhc
Q 024730 162 DLVLVHIGAGEKTNDDKGKAVAHD-LEYINAL-VRVILQMA 200 (263)
Q Consensus 162 DlVFlHIka~d~ashdG~~~~K~d-IE~iD~l-VG~Im~~a 200 (263)
||||+|++++|.++|+|+++.|++ ||.||+. +++++++-
T Consensus 285 DfV~vh~~~~D~aGH~gd~~~kv~aiE~lD~~~~~~ll~al 325 (395)
T PRK04200 285 DFVFVHVEAPDEAGHEGDLEAKIKAIEDIDERVVGPILEAL 325 (395)
T ss_pred CEEEEEecCcchhhccCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999 9999997 56788775
No 5
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=99.79 E-value=1.7e-19 Score=171.46 Aligned_cols=105 Identities=21% Similarity=0.364 Sum_probs=99.4
Q ss_pred cCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcc
Q 024730 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (263)
Q Consensus 82 ~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~f 161 (263)
.+.|.+|+|.||| |+|+|+|++.++++|+|+.+||+|+.+++++|..+| +|.+|+++++++| ++|
T Consensus 221 G~~p~~p~f~e~~-gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt----~~~~k~~~~~~~l----------~~~ 285 (396)
T TIGR02535 221 GGAPKMPTFSERY-GIRGAMISAVDLLKGIGIYAGLERIEVEGATGYLDT----NYEGKVRAALEAL----------ETY 285 (396)
T ss_pred CCCCCCCCHHHhc-CCceEEEeccHHHHHHHHHcCCccccCCcccccccc----chHHHHHHHHHHH----------hhC
Confidence 4578899999999 999999999999999999999999999999999999 9999999999999 789
Q ss_pred cEEEEeeccCCccCcCCCcccccC-hHHHHHH-HHHHHHhcC
Q 024730 162 DLVLVHIGAGEKTNDDKGKAVAHD-LEYINAL-VRVILQMAQ 201 (263)
Q Consensus 162 DlVFlHIka~d~ashdG~~~~K~d-IE~iD~l-VG~Im~~a~ 201 (263)
||||||++++|.++|+|+++.|++ ||.||+. +++++++.+
T Consensus 286 Dfv~vh~~~~D~aGH~gd~~~kv~aIE~lD~~~~~~ll~al~ 327 (396)
T TIGR02535 286 DFVVVHVEAPDEAGHEGDLEAKIKAIELIDSRIVGPLLEALS 327 (396)
T ss_pred CEEEEEeCCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999996 568998763
No 6
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=99.79 E-value=1.5e-19 Score=172.07 Aligned_cols=105 Identities=18% Similarity=0.320 Sum_probs=100.2
Q ss_pred cCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcc
Q 024730 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (263)
Q Consensus 82 ~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~f 161 (263)
.+.|.+|+|+||| |+|+|+|++.++++|+|+.+||+|+.++++||..+| +|.+|+++++++| ++|
T Consensus 224 G~~p~l~~f~er~-gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gatg~~dt----~~~~k~~~~~~~l----------~~y 288 (396)
T TIGR00306 224 GRMPRVESFKERY-GLRGAMIAEVDLIKGLARLIGMDVIRVEGATGGIDT----DYRGKVRALILAL----------EEY 288 (396)
T ss_pred CCCCCCCCHHHhc-CCceEEEechHHHHHHHHHcCCeeecCCcccccccc----cHHHHHHHHHHHh----------hcC
Confidence 4578899999999 999999999999999999999999999999999999 9999999999999 789
Q ss_pred cEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcC
Q 024730 162 DLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ 201 (263)
Q Consensus 162 DlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~ 201 (263)
||||+|++++|.++|+|+++.|++ ||++|+.++.++++.+
T Consensus 289 Dfv~v~~~~~D~aGH~gd~~~k~~aIE~iD~~l~~~l~~l~ 329 (396)
T TIGR00306 289 DFVLVHTKGPDEAGHDGDPELKVRAIEKIDSKIVGPLLALD 329 (396)
T ss_pred CEEEEEecCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 9999999997787753
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.48 E-value=6.1e-14 Score=124.43 Aligned_cols=180 Identities=18% Similarity=0.313 Sum_probs=130.9
Q ss_pred ceEEEecCCcccccCC--------Cccchhhhhh------cccccc-eecCCCCCCCchhhHHHHHHHHHhhhhcccccC
Q 024730 7 KALVLYGDGLARFVEP--------SHAHLHSLAS------KAACGF-LSLPIAPPSESEEERIVREFAVLIDANQDYLSG 71 (263)
Q Consensus 7 R~LVlygdG~a~~v~p--------~h~hlhslAs------~~sCgF-Lsl~~sp~~~~~~~r~v~E~a~LlD~~d~~~~~ 71 (263)
|.++|--||+.--=.+ ..-+|+.||. .+.||- +.|| + ..-... |.+++-=....
T Consensus 2 r~ilivlDG~G~g~~~~~t~l~~a~tptld~la~~~p~~~~~~~G~~~~lp---~-g~~g~S---~~~~~~~~~~~---- 70 (252)
T PF01676_consen 2 RVILIVLDGLGDGPMPDATPLEDAGTPTLDHLAAAYPHALLGASGLMVGLP---P-GQLGGS---DVGHLAIFRGA---- 70 (252)
T ss_dssp EEEEEEETTBC-SCBTTTGHHHHSTEHHHHHHHHHSCEEEEBESGGGGTSS---T-TCHTHH---HHHHHHHEECE----
T ss_pred cEEEEEeccCCCCCCCCcChHhhcCCcHHHHHHHhhcccccccccCcccCC---C-CCcCCc---ccccccccccc----
Confidence 6778877887643333 2557899999 888885 5553 2 112222 22332111011
Q ss_pred CCCccccccccCCCCCC-chhhhccccceeeeecCchhhhhhhhcC-ceeeccCcccccCCCCCCCChhHH--HHHHHHH
Q 024730 72 IGEHTTELKWEEKSPFQ-TISDRFMGLKAALITTNSRLKSFGDKLG-FATLQLNELIETSDSLSGSPIDVV--ASELLKL 147 (263)
Q Consensus 72 ~~~~~~~~~~~~~~~ip-t~sERFmGmKAA~VTn~~likgfg~~lG-f~V~~~~gl~g~~ds~~~~~~~~~--a~~alkL 147 (263)
.+-+.+| ++.+++ |++++.|+.+..+.++++.+| +.|...+++++..++ ++..+ ++++++.
T Consensus 71 ----------~~~~~~~~~~~~~~-~l~~~~ia~~~~~~~i~~~~~g~~v~~~~g~t~~~~~----~~~~~~~~~~~~~~ 135 (252)
T PF01676_consen 71 ----------GDYPNLPPSFTEKY-GLKGAGIAETPKIGGIADFFGGMDVISVEGATGDVDP----DMSAKEIAEAAIEA 135 (252)
T ss_dssp ----------EEEES-HHHHHHHC-THHEEEEEECHHHHHHHHHTTTEEEE--STSSCCGST----TTTHHHHHHHHHHH
T ss_pred ----------ccccccccceeecc-CceecceecccccceeHHHhCCccccccccccccccc----chhhHHHHHHHHHh
Confidence 2233366 999999 999999999999999999999 999999999998888 65444 8999999
Q ss_pred hccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhc-CCcccccceeEEEEEEecccccccC
Q 024730 148 LGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMA-QPATEVGSRLHLSVVLSYGQVLEAD 225 (263)
Q Consensus 148 LGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a-~~gs~i~srlhlsvvlsYG~~~~~~ 225 (263)
| +..+|||||+|++.+|.++|+|+++.+.+ ||++|+.|+++++.. +++ .-|.|.=-.|+...-.
T Consensus 136 l--------~~~~~~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~------~~liiTaDHg~~~~~~ 201 (252)
T PF01676_consen 136 L--------KKDKYDFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLGRLLEALDKED------DLLIITADHGNDETMG 201 (252)
T ss_dssp H--------HHTTSSEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHTT------EEEEEEESSBSTTTSB
T ss_pred h--------hcccCCeEEEeecCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCC------CEEEEECCCCCccccC
Confidence 9 66889999999999999999999999999 999999999999986 433 3455555677665544
Q ss_pred C
Q 024730 226 N 226 (263)
Q Consensus 226 ~ 226 (263)
.
T Consensus 202 ~ 202 (252)
T PF01676_consen 202 H 202 (252)
T ss_dssp S
T ss_pred C
Confidence 3
No 8
>PRK12383 putative mutase; Provisional
Probab=98.82 E-value=6.9e-09 Score=100.39 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=83.7
Q ss_pred ccCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCc
Q 024730 81 WEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQ 160 (263)
Q Consensus 81 ~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~ 160 (263)
+|. +.+|+|.+++ |+++++| |+.. +++..++.++..... +.+.++.+++++| +...
T Consensus 231 ~p~-~~v~~~l~~~-G~~v~~V---------GKi~--Di~s~~G~t~~~~~~---~t~~~~~~~l~aL--------~~~~ 286 (406)
T PRK12383 231 DPK-VQVPQKLYEA-GVPVVLV---------GKVA--DIVNNPYGVSWQNLV---DTQRVMDITLDEF--------NTHP 286 (406)
T ss_pred CCc-chhhhHHHHc-CCCEEEE---------EEhH--HeeccCCcccccccC---CHHHHHHHHHHHH--------hcCC
Confidence 344 7799999999 9999999 4444 888888888855542 5669999999999 2234
Q ss_pred ccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 024730 161 FDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQPA 203 (263)
Q Consensus 161 fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~g 203 (263)
+||||+|++..|.++|+++.+.+.. ||++|+.++.+|+.-+++
T Consensus 287 ~dlvfvnl~~~D~~GH~~d~~~y~~aiE~iD~~lg~ll~~L~~~ 330 (406)
T PRK12383 287 TAFICTNIQETDLAGHAEDVARYAERLEVVDRNLARLLEAMTPD 330 (406)
T ss_pred CCEEEEeccCCccccccCCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999999 999999999999987753
No 9
>PRK05434 phosphoglyceromutase; Provisional
Probab=98.30 E-value=1.2e-06 Score=86.97 Aligned_cols=86 Identities=13% Similarity=0.255 Sum_probs=72.6
Q ss_pred CCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCccc
Q 024730 83 EKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFD 162 (263)
Q Consensus 83 ~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fD 162 (263)
.++.+|. .||+ +++++.|+..++. .+| +...++.++++.| +..+||
T Consensus 344 ~~~~~~~-e~r~-~~~s~~va~yd~~------p~M------------------s~~e~~d~~i~~l--------~~~~~D 389 (507)
T PRK05434 344 REEPFPG-EDRI-LIPSPKVATYDLK------PEM------------------SAYEVTDKLVEAI--------ESGKYD 389 (507)
T ss_pred cCCCCCC-ceee-ecCCceeecccCC------CCC------------------cHHHHHHHHHHHH--------hccCCC
Confidence 4667899 9999 9999998877765 222 4556899999999 235799
Q ss_pred EEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 024730 163 LVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 202 (263)
Q Consensus 163 lVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~ 202 (263)
|||||+..+|.++|+|+++.+.. ||.+|+.||+|++..+.
T Consensus 390 fv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~ 430 (507)
T PRK05434 390 FIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLK 430 (507)
T ss_pred EEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 99999999999998643
No 10
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=97.59 E-value=0.00015 Score=70.15 Aligned_cols=75 Identities=5% Similarity=-0.004 Sum_probs=60.1
Q ss_pred eeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc-cCcCCCcccccC-hHHHHHHHHH
Q 024730 118 ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK-TNDDKGKAVAHD-LEYINALVRV 195 (263)
Q Consensus 118 ~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~-ashdG~~~~K~d-IE~iD~lVG~ 195 (263)
|+|.-.|++....+ .+.+..+++++++| +...+||||+|++..|. ++|.++...+.. +|++|+.|+.
T Consensus 238 DiF~g~Glt~a~~~---~~~~~~~~~~l~aL--------~~~~~~lif~nl~d~D~~~GH~~d~~~y~~ale~vD~~Lg~ 306 (381)
T TIGR01696 238 DIYDGEGITKKVRT---TSNMDGMDATIKEM--------KEDFTGISFTNLVDFDALWGHRRDVAGYAAALELFDRRLPE 306 (381)
T ss_pred hEecCCCcccccCC---CCHHHHHHHHHHHH--------hcCCCCEEEEEeCCCccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555566554433 36788899999999 22348999999999995 799999999999 9999999999
Q ss_pred HHHhcCCc
Q 024730 196 ILQMAQPA 203 (263)
Q Consensus 196 Im~~a~~g 203 (263)
+++.-+++
T Consensus 307 ll~~L~~~ 314 (381)
T TIGR01696 307 LFSLLRED 314 (381)
T ss_pred HHHHhccC
Confidence 99998754
No 11
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=97.53 E-value=0.00014 Score=73.62 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcC-CcccccceeE
Q 024730 134 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ-PATEVGSRLH 211 (263)
Q Consensus 134 ~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~-~gs~i~srlh 211 (263)
.-+...++.++++.+ ...+|||||+|+..+|.++|.|+++.++. ||++|+.+++|+++.+ .| -.
T Consensus 402 eMSA~eVtd~~i~~i--------~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~Il~al~~~g------~~ 467 (558)
T PLN02538 402 KMKALEIAEKARDAL--------LSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKEILDAVEQVG------GI 467 (558)
T ss_pred CCCHHHHHHHHHHHH--------hcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC------CE
Confidence 345667889999999 45679999999999999999999999999 9999999999999863 24 34
Q ss_pred EEEEEecccc
Q 024730 212 LSVVLSYGQV 221 (263)
Q Consensus 212 lsvvlsYG~~ 221 (263)
|.|.--.||+
T Consensus 468 liITADHGNa 477 (558)
T PLN02538 468 YLVTADHGNA 477 (558)
T ss_pred EEEeCCCCCc
Confidence 5666678877
No 12
>PRK05362 phosphopentomutase; Provisional
Probab=97.35 E-value=0.00061 Score=66.17 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHhccccCcccc-cCcccEEEEeeccCCc-cCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 024730 136 PIDVVASELLKLLGLQRGKMEE-VSQFDLVLVHIGAGEK-TNDDKGKAVAHD-LEYINALVRVILQMAQP 202 (263)
Q Consensus 136 ~~~~~a~~alkLLGf~eg~~~~-~s~fDlVFlHIka~d~-ashdG~~~~K~d-IE~iD~lVG~Im~~a~~ 202 (263)
+....+.++++.| + ..++||||+|+...|. .+|.++...+.. +|++|+.|+.|++..++
T Consensus 260 ~~~~~~~~ale~L--------~~~~~~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~ 321 (394)
T PRK05362 260 SNMDGMDATIEEM--------KEAGDNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKE 321 (394)
T ss_pred CHHHHHHHHHHHH--------HhCCCCcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999 2 3468999999999998 599999999999 99999999999999865
No 13
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=96.64 E-value=0.0039 Score=62.53 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=52.6
Q ss_pred CChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 024730 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 202 (263)
Q Consensus 135 ~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~ 202 (263)
-....++.++++.+ +..+|||||+|...+|-.+|.|+.+...+ ||.+|+.||+|++..+.
T Consensus 364 Msa~evtd~~i~~I--------~~~k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke 424 (501)
T TIGR01307 364 MSAKAVTDAVLEAI--------AQGKFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKK 424 (501)
T ss_pred cCHHHHHHHHHHHH--------hccCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667888999998 34569999999999999999999998888 99999999999999753
No 14
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=93.84 E-value=0.12 Score=49.88 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEeecc--CCccCcCCCcccccC-hHHHHHHHHHHHHhcC
Q 024730 134 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDKGKAVAHD-LEYINALVRVILQMAQ 201 (263)
Q Consensus 134 ~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka--~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~ 201 (263)
.++...++++++++|- +..+-.||||.. .|.++|.++...+.+ ++.+|+.|+.+++..+
T Consensus 230 ~psL~emt~~al~~L~---------~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~ 291 (384)
T cd00016 230 EPSLAEMTEKAIDVLS---------KNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAK 291 (384)
T ss_pred CCCHHHHHHHHHHHHH---------hcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688999999999991 234777777776 899999999999999 9999999999999875
No 15
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=84.68 E-value=1.7 Score=43.77 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=63.4
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCCcccccceeEEEE
Q 024730 136 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQPATEVGSRLHLSV 214 (263)
Q Consensus 136 ~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~gs~i~srlhlsv 214 (263)
....+|.++...+ +...||+|-+++..+|-.+|-|+++..+. .|--|..||.|.++-+- -+--|+|
T Consensus 388 ~a~eva~ka~~~i--------e~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~-----~~y~lvv 454 (531)
T KOG4513|consen 388 KALEVAEKARDAI--------ESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQ-----VGYILVV 454 (531)
T ss_pred hHHHHHHHHHHHH--------HcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHh-----cCcEEEE
Confidence 3456777888877 66789999999999999999999999888 99999999999998432 2344667
Q ss_pred EEecccccccCCC
Q 024730 215 VLSYGQVLEADNS 227 (263)
Q Consensus 215 vlsYG~~~~~~~~ 227 (263)
.---|||-+-...
T Consensus 455 TADHGNAEkMv~~ 467 (531)
T KOG4513|consen 455 TADHGNAEKMVKR 467 (531)
T ss_pred EcCCCCHHHhccC
Confidence 7778888765443
No 16
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=83.15 E-value=2.5 Score=43.15 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=66.9
Q ss_pred ccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCCccc
Q 024730 127 ETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQPATE 205 (263)
Q Consensus 127 g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~gs~ 205 (263)
.++|.--+-..-.+.+++++.+ +...||++.|+-.-.|-.+|-|+++..++ +|-.|+-||+|.+..
T Consensus 363 aTYDl~PEMSa~evtd~~~~~i--------~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~----- 429 (509)
T COG0696 363 ATYDLKPEMSAKEVTDALVEAI--------EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAV----- 429 (509)
T ss_pred cccccCcccchHHHHHHHHHHH--------hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444433344566778888888 34458999999999999999999999999 999999999999984
Q ss_pred ccceeEEEEEEecccccccCC
Q 024730 206 VGSRLHLSVVLSYGQVLEADN 226 (263)
Q Consensus 206 i~srlhlsvvlsYG~~~~~~~ 226 (263)
..-.-++-+.---|++-.-.+
T Consensus 430 ~~~gg~~~iTaDHGNaE~m~d 450 (509)
T COG0696 430 KKNGGTLLITADHGNAEQMSD 450 (509)
T ss_pred HhcCCeEEEeecCcchhhccC
Confidence 344556666667777765544
No 17
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=76.99 E-value=3.1 Score=36.95 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=45.2
Q ss_pred ccCcccEEEEeeccCCccCcC-CC--cccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccc
Q 024730 157 EVSQFDLVLVHIGAGEKTNDD-KG--KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLE 223 (263)
Q Consensus 157 ~~s~fDlVFlHIka~d~ashd-G~--~~~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~ 223 (263)
+..++||+++|+...|..+|. |. .+...-+.++|..||.+++..+.- ....+..+.|+=-.|-..-
T Consensus 180 ~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~-~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 180 QKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDEN-GLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHT-T-TTTEEEEEEES---EEE
T ss_pred hhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh-CCCCceEEEEEccCccccc
Confidence 445699999999999999992 22 222223999999999999996643 2334577777777777666
No 18
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=58.16 E-value=21 Score=35.78 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=65.3
Q ss_pred hhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCccc-EEEEeeccCC-ccCcCCCcccccC
Q 024730 108 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFD-LVLVHIGAGE-KTNDDKGKAVAHD 185 (263)
Q Consensus 108 ikgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fD-lVFlHIka~d-~ashdG~~~~K~d 185 (263)
+.++||-. ++|...|.+....+- +.+...+.+++.+ +.++++ |||.++--.| ..+|--+..+=.+
T Consensus 240 vi~IGKI~--DI~~~~Git~~~~~~---~n~~~~d~tl~~~--------~~~~~~~~vFtNlVdfD~~yGHRrDv~gYa~ 306 (397)
T COG1015 240 VIAIGKIA--DIYAGQGITEKVKAV---SNMDGMDVTLEEM--------KTAEFNGLVFTNLVDFDSLYGHRRDVAGYAA 306 (397)
T ss_pred eEEEeeHH--hhhccccccccccCC---CcHHHHHHHHHHH--------hcCCCCcEEEEeeeecccccccccchHHHHH
Confidence 33444443 677777887776552 5677788888888 334555 9999999999 8999988888888
Q ss_pred -hHHHHHHHHHHHHhcCCcc
Q 024730 186 -LEYINALVRVILQMAQPAT 204 (263)
Q Consensus 186 -IE~iD~lVG~Im~~a~~gs 204 (263)
+|..|+-+..+++.-++..
T Consensus 307 aLe~FD~rL~e~~~~l~edD 326 (397)
T COG1015 307 ALEEFDRRLPELIENLREDD 326 (397)
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999988765
No 19
>PF12964 DUF3853: Protein of unknown function (DUF3853); InterPro: IPR024363 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=56.96 E-value=9.6 Score=31.32 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhhhhcccccCCCCccccccccCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCccc
Q 024730 52 ERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELI 126 (263)
Q Consensus 52 ~r~v~E~a~LlD~~d~~~~~~~~~~~~~~~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~ 126 (263)
.-|+.||..|++-+.... .. .+ + ..-+.-..+| .-.++|+|+.+|..|-+.+.+.
T Consensus 12 qmTg~ell~L~~~~~~~~--~~--~~----~--~~~~~~~~~y----------vyG~~GlAklfgcSv~Ta~RiK 66 (96)
T PF12964_consen 12 QMTGEELLFLLKEGKTNS--EK--QT----S--QKAKKDEKKY----------VYGLKGLAKLFGCSVPTANRIK 66 (96)
T ss_pred HhhHHHHHHHHHHHhcCC--Cc--cC----C--ccccCcccce----------eehHHHHHHHhCCCchhHHHHH
Confidence 358899999999884421 00 00 0 1133455678 7889999999999999988774
No 20
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=56.33 E-value=34 Score=29.92 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=59.3
Q ss_pred cCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccc
Q 024730 104 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVA 183 (263)
Q Consensus 104 n~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K 183 (263)
+...++.+|+.+|..++..... .+....+.++++.+ ..+.||+||+=..+-.. ..
T Consensus 44 a~eQL~~~a~~l~vp~~~~~~~---------~~~~~~~~~~l~~~--------~~~~~D~vlIDT~Gr~~--------~d 98 (196)
T PF00448_consen 44 AVEQLKTYAEILGVPFYVARTE---------SDPAEIAREALEKF--------RKKGYDLVLIDTAGRSP--------RD 98 (196)
T ss_dssp HHHHHHHHHHHHTEEEEESSTT---------SCHHHHHHHHHHHH--------HHTTSSEEEEEE-SSSS--------TH
T ss_pred HHHHHHHHHHHhccccchhhcc---------hhhHHHHHHHHHHH--------hhcCCCEEEEecCCcch--------hh
Confidence 4678999999999998763211 24456677788777 33569999998765431 11
Q ss_pred cC-hHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccC--------CCCceeeeeccccc
Q 024730 184 HD-LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEAD--------NSNLSVLISIDEKS 239 (263)
Q Consensus 184 ~d-IE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~--------~~~~~v~~~~~e~~ 239 (263)
.+ ++.|.+++..+ .-...||++=.+.|...-+. .-.-.|++.-||..
T Consensus 99 ~~~~~el~~~~~~~---------~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 99 EELLEELKKLLEAL---------NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp HHHHHHHHHHHHHH---------SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSS
T ss_pred HHHHHHHHHHhhhc---------CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCC
Confidence 11 44444444433 12366777766666543211 01223677777754
No 21
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=54.74 E-value=11 Score=37.21 Aligned_cols=37 Identities=32% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcceEEEecCCcccccCC----------Cccchhhhhhccccccee
Q 024730 4 KPSKALVLYGDGLARFVEP----------SHAHLHSLASKAACGFLS 40 (263)
Q Consensus 4 kPSR~LVlygdG~a~~v~p----------~h~hlhslAs~~sCgFLs 40 (263)
-|++-+||.+||++..--| ..-||+.||+.|.||.+-
T Consensus 6 ~~~K~v~ii~DGmgD~p~~e~gkTPLe~A~tPnlD~lA~~G~~Gl~~ 52 (395)
T PRK04135 6 NDSKIVLLVLDGLGGLPHPENGKTELEAAKTPNLDALAKESDLGLLI 52 (395)
T ss_pred CCCcEEEEEecCCCCCCCCCCCCChhhccCCCChHHHHHcCCcccce
Confidence 4789999999999987543 256999999999999874
No 22
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=44.58 E-value=19 Score=35.26 Aligned_cols=35 Identities=31% Similarity=0.647 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCC-----------ccchhhhhhcccccceec
Q 024730 7 KALVLYGDGLARFVEPS-----------HAHLHSLASKAACGFLSL 41 (263)
Q Consensus 7 R~LVlygdG~a~~v~p~-----------h~hlhslAs~~sCgFLsl 41 (263)
+-++|.+||++..--|. .-||+.||+.|.||.+--
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~Gl~~~ 47 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAKRGRCGLLRT 47 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHhcCCCcceee
Confidence 57899999999875432 669999999999998753
No 23
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=43.82 E-value=33 Score=27.75 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=33.8
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
+|.+.|++..+..|++|.... .++ . +.+...+.+.+++ +++|+|+.- +++
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~-~v~---D----d~~~i~~~i~~~~----------~~~Dlvitt-GG~ 68 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAG-VVP---D----DADSIRAALIEAS----------READLVLTT-GGT 68 (133)
T ss_pred chHHHHHHHHHHCCCEEEEee-ecC---C----CHHHHHHHHHHHH----------hcCCEEEEC-CCC
Confidence 456789999999999985432 222 1 4556666666677 569999886 443
No 24
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=42.22 E-value=16 Score=39.07 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=68.1
Q ss_pred cCcccEEEEeeccCCccCcCCCc-c--cccChHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccCCCCceeeee
Q 024730 158 VSQFDLVLVHIGAGEKTNDDKGK-A--VAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLIS 234 (263)
Q Consensus 158 ~s~fDlVFlHIka~d~ashdG~~-~--~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~~~~~~v~~~ 234 (263)
.+++|+.++|..+.|--+|-+.. - +..++-+||..|++|-+-++.-.+-= |. +.+=.|+.--++. .--.-.+
T Consensus 189 ~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~s~d---~t-llil~gDHGM~e~-GnHGGss 263 (760)
T KOG2125|consen 189 SSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHRSGD---QT-LLILCGDHGMTES-GNHGGSS 263 (760)
T ss_pred hcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcCCCC---ce-EEEEEcccccccc-CCCCCCC
Confidence 46699999999999988886433 2 33448999999999888555443333 22 2222333332221 1224558
Q ss_pred cccccccccccccc---ceecccCCCCCCCC
Q 024730 235 IDEKSSDLSALFPR---QSYTMKGETPRNDV 262 (263)
Q Consensus 235 ~~e~~s~l~~L~Pr---QSYtMk~g~~~~dv 262 (263)
+.|+++.+-.+.|- |+|+-++++.++.|
T Consensus 264 ~~ET~s~l~~~~~N~~~~d~~~a~~~rv~Qi 294 (760)
T KOG2125|consen 264 PGETSSPLLFLLPNSNISDWLAAGLERVEQI 294 (760)
T ss_pred cccccccEEEEecCCCCcccchhccchhhhh
Confidence 99999999999995 88999998877654
No 25
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=40.33 E-value=87 Score=31.21 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=67.0
Q ss_pred CchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccC---------
Q 024730 105 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN--------- 175 (263)
Q Consensus 105 ~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~as--------- 175 (263)
.....-+|+.+||.-+--.|+-- ..+..++.||.-= |.|||-+.+-+..+
T Consensus 29 ~q~A~~y~~~fGfep~A~~~let--------g~~~~~s~alr~g-------------~~vFv~~s~~~p~~~~~G~~l~~ 87 (381)
T KOG0638|consen 29 KQAARWYCSGFGFEPLAYRGLET--------GSREWASHALRQG-------------KIVFVFNSAYNPDNSEYGDHLVK 87 (381)
T ss_pred HHHHHHHHhhcCCcchhcccccc--------cchHHHHHHhhcC-------------CEEEEEecCCCCCchhhhhhhhh
Confidence 34566789999999987777721 3466677776543 99999988876655
Q ss_pred -cCCCcccccChHHHHHHHH-HHHHhcCCcccc------cceeEEEEEEecccccc
Q 024730 176 -DDKGKAVAHDLEYINALVR-VILQMAQPATEV------GSRLHLSVVLSYGQVLE 223 (263)
Q Consensus 176 -hdG~~~~K~dIE~iD~lVG-~Im~~a~~gs~i------~srlhlsvvlsYG~~~~ 223 (263)
.||-.....++|.+|+.+. .+-+.|.+-+++ -.-.-.-+|.+||.++-
T Consensus 88 HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~th 143 (381)
T KOG0638|consen 88 HGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTH 143 (381)
T ss_pred cccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhh
Confidence 2333344455999999996 455666655442 23367789999997654
No 26
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=38.69 E-value=95 Score=25.46 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=46.7
Q ss_pred cccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCcc
Q 024730 95 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKT 174 (263)
Q Consensus 95 mGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~a 174 (263)
|.+|=|+|-+-..+.|| +.+|++++. -.+. ..+ .++++++-| ..++|+++++|=.
T Consensus 1 ~~~~I~VIGd~dtvtGF-rLaGv~~~~------v~~~----~~~-~~~~~~~~l--------~~~~~~iIiite~----- 55 (104)
T COG1436 1 MMMKIAVIGDRDTVTGF-RLAGVRVVY------VADD----EED-ELRAALRVL--------AEDDVGIILITED----- 55 (104)
T ss_pred CceEEEEEEccchhhce-eeecceeEE------EecC----hhH-HHHHHHHhh--------ccCCceEEEEeHH-----
Confidence 56777888888888777 577777755 1122 222 677777777 4568999999865
Q ss_pred CcCCCcccccChHHHHHHHHHHH
Q 024730 175 NDDKGKAVAHDLEYINALVRVIL 197 (263)
Q Consensus 175 shdG~~~~K~dIE~iD~lVG~Im 197 (263)
..|+|...+..++
T Consensus 56 ----------~a~~i~~~i~~~~ 68 (104)
T COG1436 56 ----------LAEKIREEIRRII 68 (104)
T ss_pred ----------HHhhhHHHHHHHh
Confidence 3667888887665
No 27
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=37.94 E-value=58 Score=32.45 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcC--Ccccc---c
Q 024730 134 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ--PATEV---G 207 (263)
Q Consensus 134 ~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~--~gs~i---~ 207 (263)
.+....+.++||++|. ...+-| |++|-=+.-|.++|.++...... +..+|+.|+.+++-+. +-+.| |
T Consensus 233 ~PsL~eMt~~Al~~L~------~~~~GF-fLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~~~dTLiiVTA 305 (419)
T smart00098 233 EPSLAEMTEVAIRLLS------KNERGF-FLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKKEDETLVIVTA 305 (419)
T ss_pred CCCHHHHHHHHHHHhh------cCCCce-EEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 4678899999999992 011223 55566667799999999999999 9999999999999876 44433 2
Q ss_pred ceeEEEEEEec
Q 024730 208 SRLHLSVVLSY 218 (263)
Q Consensus 208 srlhlsvvlsY 218 (263)
-+=|--++++|
T Consensus 306 DH~~g~~~~G~ 316 (419)
T smart00098 306 DHSHVGTFGGY 316 (419)
T ss_pred cCCCccccccc
Confidence 33444444555
No 28
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=37.49 E-value=1e+02 Score=25.73 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=61.6
Q ss_pred hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccCh
Q 024730 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDL 186 (263)
Q Consensus 107 likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~dI 186 (263)
.++.+=+++|++++..........| .++++.+.+ ++.||.+++..++|.....++..
T Consensus 15 ~v~~~L~~~~~ep~i~~~~~~~g~t--------iie~le~~~----------~~~~faIvl~TpDD~~~~~~~~~----- 71 (125)
T PF10137_consen 15 AVERFLEKLGLEPIIWHEQPNLGQT--------IIEKLEEAA----------DSVDFAIVLFTPDDIGYSRGEEE----- 71 (125)
T ss_pred HHHHHHHhCCCceEEeecCCCCCCc--------hHHHHHHHh----------ccCCEEEEEEcccccccccCCcc-----
Confidence 3556667789999887777532222 456666667 77899999999999766554443
Q ss_pred HHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccCCCCceeeeecccccccccccccc
Q 024730 187 EYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 248 (263)
Q Consensus 187 E~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~~~~~~v~~~~~e~~s~l~~L~Pr 248 (263)
. -....|=-|..-|+|=-..-..+.-+-+.+.--|+.|||+.+...
T Consensus 72 --------~--------~~~~aR~NVifE~G~f~g~LGr~rv~~l~~~~v~~PSDl~Gi~~~ 117 (125)
T PF10137_consen 72 --------D--------LQPRARQNVIFELGLFIGKLGRERVFILVKGGVELPSDLSGITYI 117 (125)
T ss_pred --------c--------cccccccceeehhhHHHhhcCcceEEEEEcCCccCCcccCCeEEE
Confidence 0 112233333333333222223332333555666789999988653
No 29
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=37.07 E-value=32 Score=27.94 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=35.3
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEee
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 168 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHI 168 (263)
+|.+.|++..+..|++|....=. .. +.+...+.+.+++ +++|+|+.==
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v-~D-------d~~~i~~~l~~~~----------~~~D~VittG 64 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIV-PD-------DPDAIKEALRRAL----------DRADLVITTG 64 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEE-ES-------SHHHHHHHHHHHH----------HTTSEEEEES
T ss_pred hHHHHHHHHHHHcCCeeeEEEEE-CC-------CHHHHHHHHHhhh----------ccCCEEEEcC
Confidence 46788999999999998655422 22 6677777777777 7779998743
No 30
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=36.47 E-value=55 Score=28.39 Aligned_cols=78 Identities=12% Similarity=0.219 Sum_probs=43.2
Q ss_pred cccEEEEeeccCCccCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccCCCCceeeeeccccc
Q 024730 160 QFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKS 239 (263)
Q Consensus 160 ~fDlVFlHIka~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~~~~~~v~~~~~e~~ 239 (263)
+.|+|||= .....-+ ..+++++-..+..+++.-.++.. ..|++||. |++-..-. ..|.-.++.+++.
T Consensus 2 ~~Dlvfll-D~S~Sm~-------~~~~~~~k~f~~~l~~~l~~~~~---~~rvglv~-fs~~~~~~-~~l~~~~~~~~l~ 68 (224)
T cd01475 2 PTDLVFLI-DSSRSVR-------PENFELVKQFLNQIIDSLDVGPD---ATRVGLVQ-YSSTVKQE-FPLGRFKSKADLK 68 (224)
T ss_pred CccEEEEE-eCCCCCC-------HHHHHHHHHHHHHHHHhcccCCC---ccEEEEEE-ecCceeEE-ecccccCCHHHHH
Confidence 56888883 2222111 12478888888888887655432 56777765 77654321 1222223445555
Q ss_pred cccccccccce
Q 024730 240 SDLSALFPRQS 250 (263)
Q Consensus 240 s~l~~L~PrQS 250 (263)
..+..+.+.+.
T Consensus 69 ~~i~~i~~~~~ 79 (224)
T cd01475 69 RAVRRMEYLET 79 (224)
T ss_pred HHHHhCcCCCC
Confidence 66666665543
No 31
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=34.08 E-value=1.9e+02 Score=25.46 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=50.9
Q ss_pred eeeecCchhhhhhhhcCceee--ccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcC
Q 024730 100 ALITTNSRLKSFGDKLGFATL--QLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDD 177 (263)
Q Consensus 100 A~VTn~~likgfg~~lGf~V~--~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashd 177 (263)
.+.|+...|..+++..|..|. +.+++... .+ .-...+..+++.+. + ..++|.|++|-...
T Consensus 44 vVstd~~~i~~~a~~~g~~v~~~r~~~l~~d-~~----~~~~si~~~l~~l~--~-----~~~~d~v~~l~~ts------ 105 (222)
T TIGR03584 44 VVSTDDEEIAEVAKSYGASVPFLRPKELADD-FT----GTAPVVKHAIEELK--L-----QKQYDHACCIYATA------ 105 (222)
T ss_pred EEeCCCHHHHHHHHHcCCEeEEeChHHHcCC-CC----CchHHHHHHHHHHh--h-----cCCCCEEEEecCCC------
Confidence 456777888999999998863 45555332 22 33455666677661 1 03579888887644
Q ss_pred CCcccccChHHHHHHHHHHHH
Q 024730 178 KGKAVAHDLEYINALVRVILQ 198 (263)
Q Consensus 178 G~~~~K~dIE~iD~lVG~Im~ 198 (263)
.=++.+.|++++....+
T Consensus 106 ----Pl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 106 ----PFLQAKILKEAFELLKQ 122 (222)
T ss_pred ----CcCCHHHHHHHHHHHHh
Confidence 45568899999987765
No 32
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=31.90 E-value=56 Score=26.67 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=35.3
Q ss_pred cccceeeeec--CchhhhhhhhcCc-eeeccCcccccCCCCCCCChhHHHHHHHHHhccccC
Q 024730 95 MGLKAALITT--NSRLKSFGDKLGF-ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRG 153 (263)
Q Consensus 95 mGmKAA~VTn--~~likgfg~~lGf-~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg 153 (263)
+|++-+++|+ ......+++.+|+ +..-+.+.. ++ +......++++.|+++.+
T Consensus 142 ~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~---~k----P~~k~~~~~i~~l~~~~~ 196 (215)
T PF00702_consen 142 AGIKVAILTGDNESTASAIAKQLGIFDSIVFARVI---GK----PEPKIFLRIIKELQVKPG 196 (215)
T ss_dssp TTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHE---TT----THHHHHHHHHHHHTCTGG
T ss_pred cCcceeeeecccccccccccccccccccccccccc---cc----ccchhHHHHHHHHhcCCC
Confidence 5899999994 4677899999999 321122221 12 555577899999976544
No 33
>COG2710 NifD Nitrogenase molybdenum-iron protein, alpha and beta chains [Energy production and conversion]
Probab=31.01 E-value=19 Score=35.53 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=65.0
Q ss_pred chhhHHHHHHHHHhhh-hcccccCCCCc-cccccccCCCCCCchhhhccccceeeeec---CchhhhhhhhcCceeeccC
Q 024730 49 SEEERIVREFAVLIDA-NQDYLSGIGEH-TTELKWEEKSPFQTISDRFMGLKAALITT---NSRLKSFGDKLGFATLQLN 123 (263)
Q Consensus 49 ~~~~r~v~E~a~LlD~-~d~~~~~~~~~-~~~~~~~~~~~ipt~sERFmGmKAA~VTn---~~likgfg~~lGf~V~~~~ 123 (263)
+..++.+|++|.+++. .+. .+. ..++..-.+..+-.+..|+-|-|+|+.++ -.++..|..-+||+++.+.
T Consensus 269 ~~t~~~l~~la~~~g~~~~~-----~e~v~~e~~~l~d~~~d~~~~~l~gk~v~I~~~~~~~~~~~~~~~elgm~~v~~~ 343 (456)
T COG2710 269 ENTDRFLRNLAKLLGKIEEI-----PEEVIEERGALIDAELDRYRPRLSGKKVAIYGGPDAIHLLAAFEEELGMEPVLVG 343 (456)
T ss_pred hHHHHHHHHHHHHhCCcccc-----cHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcchHHHHHHHHHcCCEEEEEE
Confidence 6789999999999994 222 110 01111111122334777886777777777 7888999999999987665
Q ss_pred cccccCCCCCCCChhHHHHHHHHH--------hccccCcccccCcccEEEEeeccC
Q 024730 124 ELIETSDSLSGSPIDVVASELLKL--------LGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 124 gl~g~~ds~~~~~~~~~a~~alkL--------LGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
--++.. +++...+...++- .+++.=...+.-+.|+++.+.++-
T Consensus 344 ~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~~~~~Dl~i~~~~g~ 394 (456)
T COG2710 344 TGVGHR-----SDYEHRIPIELLNEIIIVDDLNDLELEEFIKDLKPDLLIGGSKGR 394 (456)
T ss_pred eccCCh-----HHHHHHHHHHhhcceeEecCCcHHHHHHHhhccCCCEEEecCccc
Confidence 554421 1333222222221 111111223334679999999864
No 34
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=30.90 E-value=20 Score=35.30 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHhhhhcccccCCCCccccccccCCCCCCchhhhccccceeeeecCchhhhhhh----hcCceeecc
Q 024730 49 SEEERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKSFGD----KLGFATLQL 122 (263)
Q Consensus 49 ~~~~r~v~E~a~LlD~~d~~~~~~~~~~~~~~~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~----~lGf~V~~~ 122 (263)
++-.+.+|++|++++.-+..-.. ..++.......+....+++.|.|.|+.++.+.+-++++ .|||+|...
T Consensus 282 ~~T~~~l~~ia~~~g~~~~~e~~----i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~ 355 (457)
T TIGR01284 282 EYCAKNLRKIGEFFGIEERAERV----IEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVAV 355 (457)
T ss_pred HHHHHHHHHHHHHhCCchhHHHH----HHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 67789999999999754321000 01111122233455678889999999999887766664 599998663
No 35
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.92 E-value=75 Score=26.19 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=32.4
Q ss_pred eecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 024730 102 ITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (263)
Q Consensus 102 VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlH 167 (263)
=+|.++|.+..+.+|++|....=. + . +.+...+.+.+++ .+.|+|+.-
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~----------~~~DliItt 73 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIV-P---D----DPEEIREILRKAV----------DEADVVLTT 73 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeec-C---C----CHHHHHHHHHHHH----------hCCCEEEEC
Confidence 456779999999999998653222 2 1 4445555555555 578999986
No 36
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.58 E-value=3.4e+02 Score=26.70 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=61.0
Q ss_pred ccceeeeecCc-------hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEee
Q 024730 96 GLKAALITTNS-------RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 168 (263)
Q Consensus 96 GmKAA~VTn~~-------likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHI 168 (263)
|-+-++||... +++.+|..+|..|.... .++ ...+++..+ +.||+|++=.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~------------~~~-~l~~~L~~~----------~~~DlVLIDT 262 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE------------SFK-DLKEEITQS----------KDFDLVLVDT 262 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC------------cHH-HHHHHHHHh----------CCCCEEEEcC
Confidence 56788888766 78899999998874322 222 245556666 7899999965
Q ss_pred ccCCccCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEeccccccc--------CCCCceeeeeccccc
Q 024730 169 GAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEA--------DNSNLSVLISIDEKS 239 (263)
Q Consensus 169 ka~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~--------~~~~~~v~~~~~e~~ 239 (263)
.+-. ..+..+|+++- .+++...+ -...||+|=..+|...-. -...-.|++.-||+.
T Consensus 263 aGr~----------~~~~~~l~el~-~~l~~~~~----~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 263 IGKS----------PKDFMKLAEMK-ELLNACGR----DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCC----------ccCHHHHHHHH-HHHHhcCC----CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCC
Confidence 5432 12454565553 34444332 114566666666632211 011233777777764
No 37
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=28.97 E-value=1.8e+02 Score=25.66 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEe-eccCCc---cCcCCCcccccChHHHHHHHHHH
Q 024730 136 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVH-IGAGEK---TNDDKGKAVAHDLEYINALVRVI 196 (263)
Q Consensus 136 ~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlH-Ika~d~---ashdG~~~~K~dIE~iD~lVG~I 196 (263)
..+...+++-+.||.+.|.+-+...|-|..+- +++=+. .-=+|+.-.....|+++.++..+
T Consensus 103 G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~Vn~~~~~~lt~e~v~~il~~~ 167 (169)
T PRK07571 103 GSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVFDGKVAGKQTPESVLEKVQGW 167 (169)
T ss_pred CcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEECCEEeCCCCHHHHHHHHHHH
Confidence 34778888889999999987777667666553 222222 22255677777889999998766
No 38
>PRK03011 butyrate kinase; Provisional
Probab=28.86 E-value=1.3e+02 Score=29.15 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 136 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 136 ~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
+...+++++-+.+|- +..+-.||++|++.+
T Consensus 157 n~~~va~~~a~~~g~------~~~~~n~I~~hLGtG 186 (358)
T PRK03011 157 NQKAVARRVAKELGK------KYEELNLIVAHLGGG 186 (358)
T ss_pred hHHHHHHHHHHHhCC------CcccCcEEEEEeCCC
Confidence 899999999999962 223457999999865
No 39
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=28.84 E-value=47 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.2
Q ss_pred ceEEEecCCcccccCCC-----------ccchhhhhhcccccceec
Q 024730 7 KALVLYGDGLARFVEPS-----------HAHLHSLASKAACGFLSL 41 (263)
Q Consensus 7 R~LVlygdG~a~~v~p~-----------h~hlhslAs~~sCgFLsl 41 (263)
+-+||-+||++..--|. --||+.||+.|.||.+--
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~Gl~~~ 47 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAREGRVGLAKT 47 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHhcCCccccee
Confidence 57889999999865332 569999999999998753
No 40
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=28.61 E-value=77 Score=26.36 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=30.6
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlH 167 (263)
+|.+.|++..+..|++|....-+ . . +.+...+.+-+++ +.+++|+|+.-
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~--------~~~~~DlVitt 68 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAYEIV-P---D----DKDEIREALIEWA--------DEDGVDLILTT 68 (152)
T ss_pred chHHHHHHHHHHcCCeeeeEEEc-C---C----CHHHHHHHHHHHH--------hcCCCCEEEEC
Confidence 45678999999999987553222 2 1 3444444444455 12379999886
No 41
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=28.31 E-value=86 Score=25.16 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=31.7
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
+|.+.|....+.+|+++....-. . . +.+...+.+-+++ +++|+|+.= +++
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v-~---D----d~~~I~~~l~~~~----------~~~dliitt-GG~ 67 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIV-P---D----DKEAIKEALREAL----------ERADLVITT-GGT 67 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEe-C---C----CHHHHHHHHHHHH----------hCCCEEEEc-CCC
Confidence 44678999999999998654332 2 1 4444444444555 568987765 444
No 42
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=27.96 E-value=2.3e+02 Score=26.99 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=69.1
Q ss_pred hcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc---------------cCcCC
Q 024730 114 KLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK---------------TNDDK 178 (263)
Q Consensus 114 ~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~---------------ashdG 178 (263)
|||-.|++-+.--.+ ...+...+-+-+.. ..++=|||.||=++.=- .+--|
T Consensus 6 KlGGSvITdK~~p~t------~r~~~l~ria~eI~--------~~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G 71 (252)
T COG1608 6 KLGGSVITDKDKPRT------VREDRLRRIAREIS--------NGKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLG 71 (252)
T ss_pred EecceeeecCCCcch------hhHHHHHHHHHHHh--------cCCcccEEEEecCccccCHHHHHhCccccccccCccc
Confidence 577788776633221 12233333333333 12455999999654210 01122
Q ss_pred CcccccChHHHHHHHHH-HHHh------cCCcccc--cceeEEE-------------EEEecccccccCCCCceeeeecc
Q 024730 179 GKAVAHDLEYINALVRV-ILQM------AQPATEV--GSRLHLS-------------VVLSYGQVLEADNSNLSVLISID 236 (263)
Q Consensus 179 ~~~~K~dIE~iD~lVG~-Im~~------a~~gs~i--~srlhls-------------vvlsYG~~~~~~~~~~~v~~~~~ 236 (263)
--.....+++++..|-. .++. ++|.|.. ..|+-.+ |=+.||++--+++..++|+ |-|
T Consensus 72 ~~~~~~am~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~Ii-SGD 150 (252)
T COG1608 72 FSLTHLAMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEII-SGD 150 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEE-ecc
Confidence 22223347889999965 4444 4787773 2555555 5689999999988666554 788
Q ss_pred ccccccc-cccc
Q 024730 237 EKSSDLS-ALFP 247 (263)
Q Consensus 237 e~~s~l~-~L~P 247 (263)
++-.+|+ .|.|
T Consensus 151 dIv~~LA~~l~p 162 (252)
T COG1608 151 DIVLHLAKELKP 162 (252)
T ss_pred HHHHHHHHHhCC
Confidence 8888887 5555
No 43
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=27.56 E-value=1.2e+02 Score=24.41 Aligned_cols=53 Identities=13% Similarity=0.302 Sum_probs=37.9
Q ss_pred cccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeec
Q 024730 95 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 169 (263)
Q Consensus 95 mGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIk 169 (263)
|-+|=|+|.+...+.|| +.+|++++.+.+ ...+.++++.| ..++|-.||++=.
T Consensus 2 ~~~kIaVIGD~dtv~GF-rLaGi~~~~v~~-------------~ee~~~~i~~l--------~~~d~gII~Ite~ 54 (104)
T PRK01395 2 TMYKIGVVGDKDSILPF-KALGIDVFPVID-------------EQEAINTLRKL--------AMEDYGIIYITEQ 54 (104)
T ss_pred cceeEEEEECHHHHHHH-HHcCCeeEEecC-------------hHHHHHHHHHH--------hcCCcEEEEEcHH
Confidence 44689999999999998 688988765422 13456677766 2467899998644
No 44
>PRK14974 cell division protein FtsY; Provisional
Probab=27.47 E-value=3.2e+02 Score=26.36 Aligned_cols=79 Identities=16% Similarity=0.372 Sum_probs=47.7
Q ss_pred ccceeeeecC-------chhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEee
Q 024730 96 GLKAALITTN-------SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 168 (263)
Q Consensus 96 GmKAA~VTn~-------~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHI 168 (263)
|.+-++|+.- ..++..+..+|+.++.. ..+. +....+..+++.. ....+|+|++=.
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~-----~~g~----dp~~v~~~ai~~~--------~~~~~DvVLIDT 230 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH-----KYGA----DPAAVAYDAIEHA--------KARGIDVVLIDT 230 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc-----cCCC----CHHHHHHHHHHHH--------HhCCCCEEEEEC
Confidence 5566666544 35778899999888641 1111 3345566666665 335689999866
Q ss_pred ccCCccCcCCCcccccChHHHHHHHHHHHHhcCC
Q 024730 169 GAGEKTNDDKGKAVAHDLEYINALVRVILQMAQP 202 (263)
Q Consensus 169 ka~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~ 202 (263)
.+-. .++.+.|+.| ..+.+..+|
T Consensus 231 aGr~----------~~~~~lm~eL-~~i~~~~~p 253 (336)
T PRK14974 231 AGRM----------HTDANLMDEL-KKIVRVTKP 253 (336)
T ss_pred CCcc----------CCcHHHHHHH-HHHHHhhCC
Confidence 6442 2456677666 445555444
No 45
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=27.37 E-value=72 Score=28.44 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=42.7
Q ss_pred ccceecCCCCCC-CchhhHHHHHHHHHhhhhcccccCCCCccccccccCCCCCCchhhhccccceeeeecCchhhhhhhh
Q 024730 36 CGFLSLPIAPPS-ESEEERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDK 114 (263)
Q Consensus 36 CgFLsl~~sp~~-~~~~~r~v~E~a~LlD~~d~~~~~~~~~~~~~~~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~ 114 (263)
|+.+.| |-|.. +.=+...+.||.+.||..+.. + .+|+.++|+.. +.||.
T Consensus 15 v~~itl-nrp~~~Nal~~~~~~~l~~al~~~~~d-------------~-------------~vr~vvltg~g--~~Fsa- 64 (257)
T COG1024 15 IAVITL-NRPEKLNALNLEMLDELAEALDEAEAD-------------P-------------DVRVVVLTGAG--KAFSA- 64 (257)
T ss_pred EEEEEe-cCcccccCCCHHHHHHHHHHHHHHhhC-------------C-------------CeEEEEEECCC--Cceec-
Confidence 899999 77764 578889999999999988874 3 68899999988 77775
Q ss_pred cCcee
Q 024730 115 LGFAT 119 (263)
Q Consensus 115 lGf~V 119 (263)
|+|+
T Consensus 65 -G~Dl 68 (257)
T COG1024 65 -GADL 68 (257)
T ss_pred -ccCH
Confidence 4444
No 46
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=27.24 E-value=87 Score=28.37 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=21.3
Q ss_pred CcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHh
Q 024730 159 SQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQM 199 (263)
Q Consensus 159 s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~ 199 (263)
|+-|+||||=..+++ -...++ -++..++...++..
T Consensus 145 SDiDLifvy~~~~~~------~~~~~~~~~~~~rl~~~~~~~ 180 (247)
T PF03710_consen 145 SDIDLIFVYDPDGET------GRRSISNQEFFTRLAQRLIRL 180 (247)
T ss_dssp --EEEEEEE---TT-------SSS-SBHHHHHHHHHHHHHHH
T ss_pred cCCceEEEecccccc------ccChhhHHHHHHHHHHHHHHH
Confidence 899999999987775 123334 78899998877765
No 47
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=26.96 E-value=51 Score=32.62 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=28.3
Q ss_pred ceEEEecCCcccccCCC-----------ccchhhhhhccccccee
Q 024730 7 KALVLYGDGLARFVEPS-----------HAHLHSLASKAACGFLS 40 (263)
Q Consensus 7 R~LVlygdG~a~~v~p~-----------h~hlhslAs~~sCgFLs 40 (263)
+-+||-+||++..--|. --||+.||+.|.||.+-
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~ 48 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAKEGICGLMD 48 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHHcCCcccce
Confidence 67899999999875442 56999999999999874
No 48
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.46 E-value=1.2e+02 Score=28.47 Aligned_cols=25 Identities=8% Similarity=0.232 Sum_probs=21.5
Q ss_pred eeeeecCchhhhhhhhcCceeeccC
Q 024730 99 AALITTNSRLKSFGDKLGFATLQLN 123 (263)
Q Consensus 99 AA~VTn~~likgfg~~lGf~V~~~~ 123 (263)
+++|||++.+..+|+..|..++.++
T Consensus 120 ~~visn~~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 120 VGVVSNHPDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred EEEEECCccHHHHHHHhCCCEEEeC
Confidence 3457999999999999999998775
No 49
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=26.14 E-value=94 Score=31.27 Aligned_cols=113 Identities=21% Similarity=0.311 Sum_probs=71.1
Q ss_pred CCchhhhccc----cceeeee-------cCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcc
Q 024730 87 FQTISDRFMG----LKAALIT-------TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKM 155 (263)
Q Consensus 87 ipt~sERFmG----mKAA~VT-------n~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~ 155 (263)
+-||.=||+. -|-|+|| +...|+..|+.+|..+--+... .-..++++.|
T Consensus 220 lAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~-------------~el~~ai~~l------- 279 (407)
T COG1419 220 LAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSP-------------KELAEAIEAL------- 279 (407)
T ss_pred HHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCH-------------HHHHHHHHHh-------
Confidence 5578888862 3557777 5789999999999998433322 2346788888
Q ss_pred cccCcccEEEEeeccCCccCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccCC---------
Q 024730 156 EEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADN--------- 226 (263)
Q Consensus 156 ~~~s~fDlVFlHIka~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~~--------- 226 (263)
.++|+|||-..+-.- - -+..++.|..++.. ..-++..||||=+.-.++-.
T Consensus 280 ---~~~d~ILVDTaGrs~---~----D~~~i~el~~~~~~-----------~~~i~~~Lvlsat~K~~dlkei~~~f~~~ 338 (407)
T COG1419 280 ---RDCDVILVDTAGRSQ---Y----DKEKIEELKELIDV-----------SHSIEVYLVLSATTKYEDLKEIIKQFSLF 338 (407)
T ss_pred ---hcCCEEEEeCCCCCc---c----CHHHHHHHHHHHhc-----------cccceEEEEEecCcchHHHHHHHHHhccC
Confidence 999999996554321 0 11114444444322 24578888888665443311
Q ss_pred -CCceeeeecccccc
Q 024730 227 -SNLSVLISIDEKSS 240 (263)
Q Consensus 227 -~~~~v~~~~~e~~s 240 (263)
-.-+|++.-||+.+
T Consensus 339 ~i~~~I~TKlDET~s 353 (407)
T COG1419 339 PIDGLIFTKLDETTS 353 (407)
T ss_pred CcceeEEEcccccCc
Confidence 13457888888754
No 50
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=26.11 E-value=2.3e+02 Score=26.86 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=49.9
Q ss_pred hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccCh
Q 024730 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDL 186 (263)
Q Consensus 107 likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~dI 186 (263)
-|..+|...||.|++ | ..+.+..+..... +.-.+| |.|-+.+++ .=.|.
T Consensus 59 ~l~~~~~~~G~~vfr--------G-----s~~dVL~Rf~~a~--------~a~~~~-~VVRvTGD~---------P~~dp 107 (241)
T COG1861 59 ALEEVCRSHGFYVFR--------G-----SEEDVLQRFIIAI--------KAYSAD-VVVRVTGDN---------PFLDP 107 (241)
T ss_pred HHHHHHHHcCeeEec--------C-----CHHHHHHHHHHHH--------HhcCCC-eEEEeeCCC---------CCCCH
Confidence 588999999999954 3 4567777777777 556667 999999988 67789
Q ss_pred HHHHHHHHHHHHh
Q 024730 187 EYINALVRVILQM 199 (263)
Q Consensus 187 E~iD~lVG~Im~~ 199 (263)
|-+|.+|...++.
T Consensus 108 ~l~d~~v~~~l~~ 120 (241)
T COG1861 108 ELVDAAVDRHLEK 120 (241)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887765
No 51
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=25.41 E-value=89 Score=26.89 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
||.+.|....+.+|++|.... .++ + +.+...+.+-+++ +++|+|+.= ++.
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~-~v~---D----d~~~I~~~l~~~~----------~~~dlVItt-GG~ 68 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVT-VVG---D----DEDRIAEALRRAS----------ERADLVITT-GGL 68 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-EeC---C----CHHHHHHHHHHHH----------hCCCEEEEC-CCC
Confidence 556789999999999985422 222 2 4455555555566 678999986 444
No 52
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=24.99 E-value=47 Score=32.59 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=24.5
Q ss_pred EEEecCCcccccCC-----------Cccchhhhhhcccccceec
Q 024730 9 LVLYGDGLARFVEP-----------SHAHLHSLASKAACGFLSL 41 (263)
Q Consensus 9 LVlygdG~a~~v~p-----------~h~hlhslAs~~sCgFLsl 41 (263)
+||-+||++..--| ..-||+.||+.|.||.+--
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~~ 44 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAEEGICGLMRT 44 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHhcCCeeeeee
Confidence 35667777765433 3679999999999998753
No 53
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.91 E-value=1.3e+02 Score=28.21 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred CCCCCCchhhhcc----cc-ceeeeecCchhhhhhhhcCceeeccCc
Q 024730 83 EKSPFQTISDRFM----GL-KAALITTNSRLKSFGDKLGFATLQLNE 124 (263)
Q Consensus 83 ~~~~ipt~sERFm----Gm-KAA~VTn~~likgfg~~lGf~V~~~~g 124 (263)
....++.+-+++- .. =..+|+|++.+.++|++.|..++.++.
T Consensus 94 ~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 94 EDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCC
Confidence 3444555655541 11 256789999999999999999988773
No 54
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=24.21 E-value=1.4e+02 Score=23.20 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=28.8
Q ss_pred CceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 116 GFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 116 Gf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
|+-.+++++ .+-.++..-.=.+....++++.+|.++| |+||+-.+-.
T Consensus 42 gL~~ikv~~-~~~~s~i~kfl~e~~~~~l~~~~~a~~G--------D~ll~~Ag~~ 88 (95)
T PF02938_consen 42 GLAWIKVEE-GELKSPIAKFLSEEELKALIERLGAKPG--------DLLLFVAGKK 88 (95)
T ss_dssp HCCCEEEST-CEEECTTCCCCHHHHHHHHHHHTT--TT--------EEEEEEEESH
T ss_pred CceeeeEcC-CcccCcccccCCHHHHHHHHHHhCCCCC--------CEEEEECCCH
Confidence 345566666 2222332222247788899999988888 9999987743
No 55
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.56 E-value=1.3e+02 Score=22.48 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=24.3
Q ss_pred ccCcccEEEEeeccCCccCcCCCcccccChHHHHHHHHHHHH
Q 024730 157 EVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQ 198 (263)
Q Consensus 157 ~~s~fDlVFlHIka~d~ashdG~~~~K~dIE~iD~lVG~Im~ 198 (263)
.....|+|+++++..|..... ........+++.+++..+.+
T Consensus 62 ~~~~~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~ 102 (187)
T cd00229 62 LKDKPDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRE 102 (187)
T ss_pred ccCCCCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHH
Confidence 347899999999988753221 01111225566666666655
No 56
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=23.47 E-value=1.9e+02 Score=27.87 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhhhcccccCCCCccccccccCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCC
Q 024730 52 ERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDS 131 (263)
Q Consensus 52 ~r~v~E~a~LlD~~d~~~~~~~~~~~~~~~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds 131 (263)
.....|+++.+++..+-+ .++-.++ +|...-+| ++.. + -|+-||+- .
T Consensus 108 ~~~~~~~~~~~~~p~~vf------Dt~fh~~----~~~~a~~~-alpe-~----------~RrygfHg--------l--- 154 (351)
T TIGR02707 108 AIIANELADELNIPAYIV------DPVVVDE----MEDVARIS-GLPE-I----------ERKSIFHA--------L--- 154 (351)
T ss_pred HHHHHHHHHHcCCCEEEc------CChhhhc----ChHHHHHh-ccch-h----------hhhhchhh--------h---
Confidence 555666666556555322 1222223 67777777 5552 2 15555553 3
Q ss_pred CCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 132 LSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 132 ~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
++..++.++-+.+|- +..+-.+|++|++.+
T Consensus 155 ----s~~~v~~~~~~~~g~------~~~~~~~I~~hLGtG 184 (351)
T TIGR02707 155 ----NQKAVARRIAKELGK------RYEEMNLIVAHMGGG 184 (351)
T ss_pred ----hHHHHHHHHHHHcCC------CcccCCEEEEEeCCC
Confidence 899999999999962 112336999999865
No 57
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.34 E-value=34 Score=23.98 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=32.9
Q ss_pred hhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccc
Q 024730 108 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQ 151 (263)
Q Consensus 108 ikgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~ 151 (263)
|+-+|+.+|..+-++.-+..+... -+.....++.++++-|||+
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~~~-vs~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGPPR-VSEETRERILEAAEELGYR 44 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTCSS-STHHHHHHHHHHHHHHTB-
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHCCC
Confidence 678999999999998888655432 3456778888999999886
No 58
>PLN02917 CMP-KDO synthetase
Probab=23.08 E-value=3.3e+02 Score=25.34 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=52.9
Q ss_pred eeecCchhhhhhhhcCceeecc-CcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCC
Q 024730 101 LITTNSRLKSFGDKLGFATLQL-NELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 179 (263)
Q Consensus 101 ~VTn~~likgfg~~lGf~V~~~-~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~ 179 (263)
+.|+...+...++..|..++.. +...+ ++ +.+..+++.|. .++|.|+++-+..
T Consensus 93 V~~~~e~I~~~~~~~~v~vi~~~~~~~~--GT-------~~~~~a~~~l~---------~~~d~Vlil~gD~-------- 146 (293)
T PLN02917 93 VATDDERIAECCRGFGADVIMTSESCRN--GT-------ERCNEALKKLE---------KKYDIVVNIQGDE-------- 146 (293)
T ss_pred EECChHHHHHHHHHcCCEEEeCCcccCC--ch-------HHHHHHHHhcc---------CCCCEEEEecCCc--------
Confidence 4456677888888888877643 33322 23 12346777771 2468887776633
Q ss_pred cccccChHHHHHHHHHHHHhcCCcccccc----eeEEEEEEeccccc
Q 024730 180 KAVAHDLEYINALVRVILQMAQPATEVGS----RLHLSVVLSYGQVL 222 (263)
Q Consensus 180 ~~~K~dIE~iD~lVG~Im~~a~~gs~i~s----rlhlsvvlsYG~~~ 222 (263)
.=++-+.|++++....+.+ + .+.. .+++.-..+||.+.
T Consensus 147 --PlI~~~tI~~li~~~~~~~--~-~iv~t~~~~~~~~~~~~ygrv~ 188 (293)
T PLN02917 147 --PLIEPEIIDGVVKALQAAP--D-AVFSTAVTSLKPEDASDPNRVK 188 (293)
T ss_pred --CCCCHHHHHHHHHHHHhcC--C-ceEEEEeeecCHHHhcCCCceE
Confidence 4456788888888653321 1 1221 12444468899885
No 59
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=21.68 E-value=1.8e+02 Score=23.11 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=34.9
Q ss_pred cceeeeecCchhhhhhhhcCce-eeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeec
Q 024730 97 LKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 169 (263)
Q Consensus 97 mKAA~VTn~~likgfg~~lGf~-V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIk 169 (263)
||=|+|++...+.|| +.+|++ ++.++ + ...++++++-| ++.++|-.||++=.
T Consensus 1 mkIaVIgD~dtv~GF-rLaGi~~~~~v~-------~------~ee~~~~l~~l-------~~~~d~gII~ite~ 53 (100)
T PRK03957 1 MKIAVVGDRDTVTGF-RLAGLTEVYEVK-------N------PEEAKNAIKEL-------VENDEIGIIIITER 53 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCCceEEeC-------C------HHHHHHHHHHH-------hhCCCeEEEEEcHH
Confidence 688999999999888 678885 44221 1 14466666644 24567899998543
No 60
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.54 E-value=1.9e+02 Score=23.66 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=24.9
Q ss_pred CcccEEEEeeccCCccCcCCCcccccChHHHHHHHHHHHHhcCC
Q 024730 159 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQP 202 (263)
Q Consensus 159 s~fDlVFlHIka~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~ 202 (263)
.+.|+|+|.++.-|.....+. .....++..=..+..+++.++.
T Consensus 68 ~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~~~~ii~~~~~ 110 (193)
T cd01835 68 NVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFGLNQLLEEAKR 110 (193)
T ss_pred CCCCEEEEEecCcccccccCc-ccccCHHHHHHHHHHHHHHHhc
Confidence 467999999999887655332 1223344444444455555443
No 61
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.86 E-value=1.3e+02 Score=23.95 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=24.8
Q ss_pred CcccEEEEeeccCCccCcCC-CcccccChHHHHHHHHHHHH
Q 024730 159 SQFDLVLVHIGAGEKTNDDK-GKAVAHDLEYINALVRVILQ 198 (263)
Q Consensus 159 s~fDlVFlHIka~d~ashdG-~~~~K~dIE~iD~lVG~Im~ 198 (263)
.++|+|+|+++.-|.....+ ......-.+.|+.+|..+..
T Consensus 60 ~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~ 100 (191)
T cd01834 60 AKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKN 100 (191)
T ss_pred CCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHc
Confidence 56899999999888653311 01111125777777777663
No 62
>PRK03673 hypothetical protein; Provisional
Probab=20.83 E-value=1e+02 Score=30.49 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=33.8
Q ss_pred eecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeec
Q 024730 102 ITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 169 (263)
Q Consensus 102 VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIk 169 (263)
=||..+|....+.+|++|....-. .+ +.+.....+-+++ +++|+|++-=+
T Consensus 20 dtN~~~la~~L~~~G~~v~~~~~v----~D----~~~~i~~~l~~a~----------~~~DlVI~tGG 69 (396)
T PRK03673 20 DTNAAWLADFFFHQGLPLSRRNTV----GD----NLDALVAILRERS----------QHADVLIVNGG 69 (396)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEc----CC----CHHHHHHHHHHHh----------ccCCEEEEcCC
Confidence 367889999999999998443221 22 4555555555566 78899998644
No 63
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.50 E-value=2e+02 Score=26.84 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=41.5
Q ss_pred CCCCCchhhhcc----cc-ceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCccccc
Q 024730 84 KSPFQTISDRFM----GL-KAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEV 158 (263)
Q Consensus 84 ~~~ipt~sERFm----Gm-KAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~ 158 (263)
...++.|-+++- +. =.++|||.+.++++|++.|..++.++--. .+ ...++....+.|+.+
T Consensus 100 gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~---~~--~~~~~~~~~~~l~~~---------- 164 (286)
T PRK06027 100 DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTK---ET--KAEAEARLLELIDEY---------- 164 (286)
T ss_pred CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCc---cc--cchhHHHHHHHHHHh----------
Confidence 445555554431 12 25678999999999999999998765321 11 123444444444444
Q ss_pred CcccEEEEe
Q 024730 159 SQFDLVLVH 167 (263)
Q Consensus 159 s~fDlVFlH 167 (263)
+.||+++-
T Consensus 165 -~~Dlivla 172 (286)
T PRK06027 165 -QPDLVVLA 172 (286)
T ss_pred -CCCEEEEe
Confidence 45998874
No 64
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=20.36 E-value=51 Score=30.40 Aligned_cols=43 Identities=16% Similarity=0.423 Sum_probs=16.3
Q ss_pred CCCCCCchhhhcc---------------------ccceeeeecCchhhhhhhhcCceeeccCcc
Q 024730 83 EKSPFQTISDRFM---------------------GLKAALITTNSRLKSFGDKLGFATLQLNEL 125 (263)
Q Consensus 83 ~~~~ipt~sERFm---------------------GmKAA~VTn~~likgfg~~lGf~V~~~~gl 125 (263)
-+..|.+|.|||- -++|++||+--.|..+|.++|..++.+..+
T Consensus 132 i~~~I~~lRekYRealr~G~ldS~~D~dvl~LA~El~a~lvt~D~gi~~~A~~lGi~~i~~~~F 195 (205)
T PF08745_consen 132 IGEIIRKLREKYREALRKGILDSREDIDVLLLALELDAVLVTDDYGIQNWAEKLGIRFIDARDF 195 (205)
T ss_dssp -----------------------HHHHHHHHHHHHHT--EE---HHHHHHHHHTT--EE-----
T ss_pred ccccccccccccccccccccCCChHhHHHHHHHHHcCCEEEeCCHhHHHHHHHCCCEEEecccc
Confidence 3556888999983 257899999999999999999999987755
Done!