Query 024730
Match_columns 263
No_of_seqs 40 out of 42
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 13:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i09a1 c.76.1.5 (A:2-107,A:22 59.3 3.4 0.00025 29.9 3.3 61 137-203 149-211 (283)
2 d1j8yf2 c.37.1.10 (F:87-297) G 56.5 12 0.00091 30.0 6.7 96 95-221 39-141 (211)
3 d2nqra3 c.57.1.2 (A:178-326) M 56.4 3.2 0.00023 31.8 2.8 47 103-167 27-73 (149)
4 d2ftsa3 c.57.1.2 (A:499-653) G 53.6 3.5 0.00026 31.2 2.6 47 103-167 27-73 (155)
5 d1dcfa_ c.23.1.2 (A:) Receiver 49.0 8.6 0.00062 27.9 4.1 55 94-173 5-63 (134)
6 d1y5ea1 c.57.1.1 (A:12-166) Mo 47.8 9.5 0.00069 28.5 4.3 59 97-171 3-72 (155)
7 d2g2ca1 c.57.1.1 (A:1-163) Put 45.7 5.9 0.00043 30.0 2.7 56 95-167 1-73 (163)
8 d1wu2a3 c.57.1.2 (A:181-324) M 43.9 4.6 0.00033 30.7 1.8 49 103-169 31-79 (144)
9 d1uz5a3 c.57.1.2 (A:181-328) M 40.1 7.9 0.00057 29.2 2.7 50 103-170 27-76 (148)
10 d2ayxa1 c.23.1.1 (A:817-949) S 39.4 16 0.0012 26.2 4.3 54 96-173 8-65 (133)
11 d1mkza_ c.57.1.1 (A:) MoaB {Es 36.6 23 0.0016 27.0 4.9 59 93-167 5-74 (170)
12 d1krwa_ c.23.1.1 (A:) NTRC rec 34.4 25 0.0018 24.7 4.6 44 106-173 17-60 (123)
13 d1okkd2 c.37.1.10 (D:97-303) G 31.7 29 0.0021 27.5 5.0 59 96-171 34-99 (207)
14 d1eyra_ c.68.1.13 (A:) CMP acy 31.7 69 0.005 23.1 6.9 76 100-198 49-124 (225)
15 g1nme.1 c.17.1.1 (A:,B:) Apopa 31.0 16 0.0012 28.8 3.2 23 106-128 44-66 (238)
16 d1ny5a1 c.23.1.1 (A:1-137) Tra 30.8 12 0.00084 27.2 2.1 72 106-222 14-85 (137)
17 d1m1nb_ c.92.2.3 (B:) Nitrogen 29.6 22 0.0016 32.1 4.3 108 49-168 322-445 (522)
18 d1v4aa2 d.218.1.9 (A:2-286) Gl 29.1 20 0.0015 30.0 3.7 37 159-199 171-208 (285)
19 d1qh8b_ c.92.2.3 (B:) Nitrogen 28.3 23 0.0017 31.9 4.1 91 49-151 319-412 (519)
20 d2d8za2 g.39.1.3 (A:33-64) Fou 27.7 7.3 0.00053 23.9 0.4 11 248-258 11-21 (32)
21 d1xfka_ c.42.1.1 (A:) Formimid 27.1 32 0.0023 28.5 4.6 52 103-171 196-247 (324)
22 d1mvoa_ c.23.1.1 (A:) PhoP rec 26.4 13 0.00095 26.1 1.7 43 107-173 17-59 (121)
23 d1n3ya_ c.62.1.1 (A:) Integrin 25.9 31 0.0023 25.3 3.9 55 186-247 20-74 (189)
24 d1qp8a1 c.2.1.4 (A:83-263) Put 25.3 34 0.0025 26.2 4.2 78 81-176 31-108 (181)
25 d1k7ha_ c.76.1.1 (A:) Alkaline 24.7 18 0.0013 32.4 2.7 62 134-202 284-346 (476)
26 d1mb3a_ c.23.1.1 (A:) Cell div 23.8 29 0.0021 24.1 3.3 43 107-173 16-58 (123)
27 d1qwja_ c.68.1.13 (A:) CMP acy 23.8 1.2E+02 0.009 21.8 7.6 76 100-199 48-123 (228)
28 d1jlja_ c.57.1.1 (A:) Gephyrin 23.7 24 0.0017 26.3 2.9 47 104-166 23-72 (169)
29 d2qy9a2 c.37.1.10 (A:285-495) 22.6 1.1E+02 0.0084 24.0 7.1 116 96-239 37-168 (211)
30 d1xg5a_ c.2.1.2 (A:) Putative 21.7 1.2E+02 0.0091 23.5 7.2 85 86-214 4-94 (257)
31 d1zh2a1 c.23.1.1 (A:2-120) Tra 21.5 25 0.0019 24.6 2.5 43 107-173 15-57 (119)
32 d2pl1a1 c.23.1.1 (A:1-119) Pho 21.3 20 0.0015 25.2 1.9 43 107-173 15-57 (119)
33 d2o14a2 c.23.10.8 (A:160-367) 21.2 15 0.0011 27.0 1.1 15 159-173 70-84 (208)
34 d2piia_ d.58.5.1 (A:) PII (pro 20.8 1.3E+02 0.0093 21.3 6.5 29 187-215 68-96 (112)
35 d2d00a1 c.149.1.1 (A:6-109) V- 20.4 65 0.0047 22.7 4.6 52 100-172 2-53 (104)
36 d1yioa2 c.23.1.1 (A:3-130) Res 20.1 55 0.004 22.8 4.2 71 108-223 18-88 (128)
No 1
>d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]}
Probab=59.28 E-value=3.4 Score=29.93 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhccccCcccccCcccEEEEeeccCCcc-CcCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 024730 137 IDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKT-NDDKGKAVAHD-LEYINALVRVILQMAQPA 203 (263)
Q Consensus 137 ~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~a-shdG~~~~K~d-IE~iD~lVG~Im~~a~~g 203 (263)
......++++.+- ....+..++++|....|.. .|......-.. |+++|..||+|++..+.-
T Consensus 149 ~~~~~d~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~y~~~i~~~D~~iG~il~~L~~~ 211 (283)
T d2i09a1 149 NSHGVDTLIKTMG------LSAFTKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDERLPEIIAAMKVD 211 (283)
T ss_dssp HHHHHHHHHHHHH------CSSCCSEEEEEEECHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred cHHHHHHHHHHHH------hcCCCcceeecccCCcccccCcCccHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 3445666777661 1223567889998877654 23333332333 999999999999987653
No 2
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=56.54 E-value=12 Score=29.98 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=57.2
Q ss_pred cccceeeeec-------CchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 024730 95 MGLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (263)
Q Consensus 95 mGmKAA~VTn-------~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlH 167 (263)
.|.|-++||. ..+++.+|+.+|..++..+.- .+....+.+++.+. ...++|+||+=
T Consensus 39 ~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~---------~~~~~~~~~a~~~~--------~~~~~d~IlID 101 (211)
T d1j8yf2 39 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGE---------KDVVGIAKRGVEKF--------LSEKMEIIIVD 101 (211)
T ss_dssp TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTC---------CCHHHHHHHHHHHH--------HHTTCSEEEEE
T ss_pred CCCceEEEEeeccccchhHHHHHhccccCcceeecccc---------hhhhHHHHHHHHHh--------hccCCceEEEe
Confidence 3678888876 578999999999998653321 24555667776654 22678999997
Q ss_pred eccCCccCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEecccc
Q 024730 168 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQV 221 (263)
Q Consensus 168 Ika~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~ 221 (263)
..+-.. .| +....++.+.++. +..+| -..||++-.+.|.-
T Consensus 102 TaGr~~--~~---~~~~~~~el~~~~----~~~~~-----~~~~LVl~a~~~~~ 141 (211)
T d1j8yf2 102 TAGRHG--YG---EEAALLEEMKNIY----EAIKP-----DEVTLVIDASIGQK 141 (211)
T ss_dssp CCCSCC--TT---CHHHHHHHHHHHH----HHHCC-----SEEEEEEEGGGGGG
T ss_pred cCCcCc--cc---hhhHHHHHHHHHH----hhcCC-----ceEEEEEecccCcc
Confidence 554321 00 0111133444333 33232 25778777777753
No 3
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=56.42 E-value=3.2 Score=31.80 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.7
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlH 167 (263)
||...|+++.+..|++|....=+ . . +.+...+.+.+++ +++|+|+.-
T Consensus 27 sN~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~----------~~~Divitt 73 (149)
T d2nqra3 27 TNRLAVHLMLEQLGCEVINLGII-R---D----DPHALRAAFIEAD----------SQADVVISS 73 (149)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEE-C---S----SHHHHHHHHHHHH----------HHCSEEEEC
T ss_pred cchHHHHhhhhhcceEEEEcccc-C---C----hHHHHHHHHHhcc----------cccCEEEEc
Confidence 57899999999999999765444 2 2 5566666666777 788999984
No 4
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=53.61 E-value=3.5 Score=31.23 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=34.8
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEe
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlH 167 (263)
||..+|++..+.+|++|....=+ + . +.+...+.+.+++ +++|+|+.-
T Consensus 27 sN~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~----------~~~Dliitt 73 (155)
T d2ftsa3 27 SNRSTLLATIQEHGYPTINLGIV-G---D----NPDDLLNALNEGI----------SRADVIITS 73 (155)
T ss_dssp CHHHHHHHHHHTTTCCEEEEEEE-C---S----SHHHHHHHHHHHH----------HHCSEEEEE
T ss_pred chHHHHHHHhcccccceEEEEEe-c---C----chhHHHHHHHHhh----------cccCEEEEe
Confidence 67889999999999999654322 2 2 5666666666788 788998874
No 5
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=48.95 E-value=8.6 Score=27.88 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=39.8
Q ss_pred ccccceeeeecCch----hhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeec
Q 024730 94 FMGLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 169 (263)
Q Consensus 94 FmGmKAA~VTn~~l----ikgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIk 169 (263)
|-|+|--+|=+++. ++.+-+.+|++|..+.. ..+|++++. ++||+||+=+.
T Consensus 5 ~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~----------------g~eal~~l~---------~~~dlillD~~ 59 (134)
T d1dcfa_ 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSS----------------NEECLRVVS---------HEHKVVFMDVC 59 (134)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS----------------HHHHHHHCC---------TTCSEEEEECC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECC----------------HHHHHHHhh---------cCCCeEEEEec
Confidence 34889888866665 56667788999854322 357788872 47999999999
Q ss_pred cCCc
Q 024730 170 AGEK 173 (263)
Q Consensus 170 a~d~ 173 (263)
+++-
T Consensus 60 mP~~ 63 (134)
T d1dcfa_ 60 MPGV 63 (134)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 8863
No 6
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Probab=47.82 E-value=9.5 Score=28.46 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=35.8
Q ss_pred cceeeee-----------cCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEE
Q 024730 97 LKAALIT-----------TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVL 165 (263)
Q Consensus 97 mKAA~VT-----------n~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVF 165 (263)
||+|+|| |-+.|...-+..|++|....=. .. +.+....++-++. +.+.+|+|+
T Consensus 3 ~r~~vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv----~D----~~~~i~~~l~~~~--------~~~~~DlIv 66 (155)
T d1y5ea1 3 VRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIV----KD----DKESIQQAVLAGY--------HKEDVDVVL 66 (155)
T ss_dssp CEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEE----CS----SHHHHHHHHHHHH--------TCTTCSEEE
T ss_pred eEEEEEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeee----cc----hHHHHHHHHHHHH--------hccCCCEEE
Confidence 5666666 3457788888999999754322 11 3444444444444 347789998
Q ss_pred EeeccC
Q 024730 166 VHIGAG 171 (263)
Q Consensus 166 lHIka~ 171 (263)
.=-+..
T Consensus 67 TtGGts 72 (155)
T d1y5ea1 67 TNGGTG 72 (155)
T ss_dssp EECCCS
T ss_pred Eeeeee
Confidence 765543
No 7
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=45.70 E-value=5.9 Score=30.00 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=30.7
Q ss_pred cccceeeeecCchhh-----------------hhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccc
Q 024730 95 MGLKAALITTNSRLK-----------------SFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEE 157 (263)
Q Consensus 95 mGmKAA~VTn~~lik-----------------gfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~ 157 (263)
|.||+|+||-..-+. .-.+.+|++|.... .... +.+...+.+.+++
T Consensus 1 ~~~r~~iitigDe~~~G~~~D~~g~~~~~~L~~~l~~~G~~v~~~~----iv~D----~~~~i~~~~~~a~--------- 63 (163)
T d2g2ca1 1 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEV----VVPE----GYDTVVEAIATAL--------- 63 (163)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEE----EECS----SHHHHHHHHHHHH---------
T ss_pred CceEEEEEEeCCccccCccccCchHHHHHHHHHHHHhCCeEEEEEE----eecc----hHHHHHHHHHhhh---------
Confidence 778888888754432 22344577663322 2222 5555556666666
Q ss_pred cCcccEEEEe
Q 024730 158 VSQFDLVLVH 167 (263)
Q Consensus 158 ~s~fDlVFlH 167 (263)
.+.+|+|+.=
T Consensus 64 ~~~~DlVitt 73 (163)
T d2g2ca1 64 KQGARFIITA 73 (163)
T ss_dssp HTTCSEEEEE
T ss_pred ccCCCEEEec
Confidence 1348999874
No 8
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=43.90 E-value=4.6 Score=30.66 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=32.6
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeec
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 169 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIk 169 (263)
||...|.++.+++|++|....=+. . +.+...+.+-+++ +++|+|+.==+
T Consensus 31 sN~~~L~~~l~~~G~~v~~~~iv~----D----d~~~i~~~l~~~~----------~~~DlvIttGG 79 (144)
T d1wu2a3 31 TNSIMLQGLVEKFFGEPILYGVLP----D----DESIIKETLEKAK----------NECDIVLITGG 79 (144)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEEC----S----CHHHHTTHHHHHH----------HCSEEEECC--
T ss_pred cCchHHhhhhcccCcceeEEEEec----c----hHHHHHHHHHHhh----------hcccEEEEccc
Confidence 567899999999999998665442 1 3444444444466 77899886443
No 9
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=40.08 E-value=7.9 Score=29.20 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=34.1
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeecc
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 170 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka 170 (263)
||...|.++.+.+|++|....=. + . +.+...+.+-+++ ++.|+|+.-=+.
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~i~~~~----------~~~DliIttGG~ 76 (148)
T d1uz5a3 27 INGRALCDAINELGGEGIFMGVA-R---D----DKESLKALIEKAV----------NVGDVVVISGGA 76 (148)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEE-C---S----SHHHHHHHHHHHH----------HHCSEEEEECCC
T ss_pred CChHHHHHhhhcccccceeeeee-c---c----HHHHHHHHHHhhh----------ccccEEEECCCc
Confidence 67889999999999999765433 2 1 4444444444567 778988775443
No 10
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=39.36 E-value=16 Score=26.22 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=36.2
Q ss_pred ccceeeeecCch----hhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 96 GLKAALITTNSR----LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 96 GmKAA~VTn~~l----ikgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
+||=-+|=+++. ++.+-+..|+.|..... +.+|++++ ...+||+||+-+.+.
T Consensus 8 ~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~----------------g~ea~~~~--------~~~~~dlillD~~mP 63 (133)
T d2ayxa1 8 DMMILVVDDHPINRRLLADQLGSLGYQCKTAND----------------GVDALNVL--------SKNHIDIVLSDVNMP 63 (133)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECC----------------SHHHHHHH--------HHSCCSEEEEEESSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEEECc----------------HHHHHHHH--------hccCceEEEEeccCC
Confidence 455556655544 55666778998854221 13566776 457899999999998
Q ss_pred Cc
Q 024730 172 EK 173 (263)
Q Consensus 172 d~ 173 (263)
+-
T Consensus 64 ~~ 65 (133)
T d2ayxa1 64 NM 65 (133)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 11
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=36.65 E-value=23 Score=26.96 Aligned_cols=59 Identities=12% Similarity=0.294 Sum_probs=36.8
Q ss_pred hccccceeeeecC-----------chhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcc
Q 024730 93 RFMGLKAALITTN-----------SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (263)
Q Consensus 93 RFmGmKAA~VTn~-----------~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~f 161 (263)
-|.-+|.|+||-+ +.|.+..+..|++|... +.+. . +.+.....+.+.+ ....+
T Consensus 5 ~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~-~iv~---D----d~~~~~~~l~~~~--------~~~~~ 68 (170)
T d1mkza_ 5 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDK-AIVK---E----NRYAIRAQVSAWI--------ASDDV 68 (170)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEE-EEEC---S----CHHHHHHHHHHHH--------HSSSC
T ss_pred CcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEe-eeeC---C----CHHHHHHHHHhhh--------hcccc
Confidence 4656777777754 37888999999999643 2222 1 3445555554444 34668
Q ss_pred cEEEEe
Q 024730 162 DLVLVH 167 (263)
Q Consensus 162 DlVFlH 167 (263)
|+|+-=
T Consensus 69 dlIiTt 74 (170)
T d1mkza_ 69 QVVLIT 74 (170)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 887753
No 12
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=34.44 E-value=25 Score=24.71 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=31.0
Q ss_pred chhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc
Q 024730 106 SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 173 (263)
Q Consensus 106 ~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ 173 (263)
..++.+-+..|++|..... ..++++++ ...+||+|++-+.+++.
T Consensus 17 ~~l~~~L~~~g~~v~~a~~----------------~~~a~~~l--------~~~~~dlii~D~~mp~~ 60 (123)
T d1krwa_ 17 WVLERALAGAGLTCTTFEN----------------GNEVLAAL--------ASKTPDVLLSDIRMPGM 60 (123)
T ss_dssp HHHHHHHHHTTCEEEEESS----------------SHHHHHHH--------TTCCCSEEEECCSSSSS
T ss_pred HHHHHHHHHCCCEEEEeCC----------------HHHHHHHH--------HhCCCCEEEehhhcCCc
Confidence 3456666778999854332 24677777 44689999999998863
No 13
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=31.70 E-value=29 Score=27.51 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=40.4
Q ss_pred ccceeeeec-------CchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEee
Q 024730 96 GLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 168 (263)
Q Consensus 96 GmKAA~VTn-------~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHI 168 (263)
|-|-++||. ...++.+|+.+|..++..+.- .+....+.+.+... ..++||+||+=.
T Consensus 34 g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~---------~d~~~~~~~~~~~~--------~~~~~d~ilIDT 96 (207)
T d1okkd2 34 GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG---------TDPAALAYDAVQAM--------KARGYDLLFVDT 96 (207)
T ss_dssp TCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTT---------CCHHHHHHHHHHHH--------HHHTCSEEEECC
T ss_pred CCcEEEEEeccccccchhhHhhcccccCceEEeccCC---------ccHHHHHHHHHHHH--------HHCCCCEEEcCc
Confidence 566676664 478999999999998765432 25556666655443 226789999976
Q ss_pred ccC
Q 024730 169 GAG 171 (263)
Q Consensus 169 ka~ 171 (263)
.+-
T Consensus 97 aGr 99 (207)
T d1okkd2 97 AGR 99 (207)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 14
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=31.66 E-value=69 Score=23.13 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=53.3
Q ss_pred eeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCC
Q 024730 100 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 179 (263)
Q Consensus 100 A~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~ 179 (263)
-+.|++..+..++++.|..++..+.-....++ ........+++.++ .++|.|.++ -++.
T Consensus 49 iv~td~~~i~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~d~ii~~-~~~~------- 107 (225)
T d1eyra_ 49 IVSTDGGLIAEEAKNFGVEVVLRPAELASDTA----SSISGVIHALETIG---------SNSGTVTLL-QPTS------- 107 (225)
T ss_dssp EEEESCHHHHHHHHHTTCEEEECCHHHHSTTC----CHHHHHHHHHHHHT---------CCSEEEEEC-CTTC-------
T ss_pred EEeeccchhhhhhhhhcceeeeeccccccccc----cchhhccccccccc---------cccceEEEe-eccc-------
Confidence 46688888999999999998766555444333 55667788888884 457877555 3333
Q ss_pred cccccChHHHHHHHHHHHH
Q 024730 180 KAVAHDLEYINALVRVILQ 198 (263)
Q Consensus 180 ~~~K~dIE~iD~lVG~Im~ 198 (263)
.=.+.+.||+++..+..
T Consensus 108 --P~~~~~~I~~~i~~~~~ 124 (225)
T d1eyra_ 108 --PLRTGAHIREAFSLFDE 124 (225)
T ss_dssp --TTCCHHHHHHHHTTCCT
T ss_pred --cccccccccccceeecc
Confidence 55678999999875443
No 15
>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.02 E-value=16 Score=28.83 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.9
Q ss_pred chhhhhhhhcCceeeccCccccc
Q 024730 106 SRLKSFGDKLGFATLQLNELIET 128 (263)
Q Consensus 106 ~likgfg~~lGf~V~~~~gl~g~ 128 (263)
..|+.+-++|||+|....+++..
T Consensus 44 ~~l~~~l~~lGF~V~~~~nlt~~ 66 (238)
T g1nme.1 44 ANLRETFRNLKYEVRNKNDLTRE 66 (238)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCHH
Confidence 34666778999999988888653
No 16
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=30.76 E-value=12 Score=27.16 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=44.6
Q ss_pred chhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC
Q 024730 106 SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD 185 (263)
Q Consensus 106 ~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d 185 (263)
..++.+-+..||.|..... ..+|+++| ...+||+|++-+.+++.. .
T Consensus 14 ~~l~~~L~~~g~~v~~a~~----------------~~eAl~~l--------~~~~~dlvilD~~mp~~~----------G 59 (137)
T d1ny5a1 14 GLLEEYLSMKGIKVESAER----------------GKEAYKLL--------SEKHFNVVLLDLLLPDVN----------G 59 (137)
T ss_dssp HHHHHHHHHHTCEEEEESS----------------HHHHHHHH--------HHSCCSEEEEESBCSSSB----------H
T ss_pred HHHHHHHHHCCCEEEEECC----------------HHHHHHHh--------hccccccchHHHhhhhhh----------H
Confidence 3456666778999854321 35778887 346799999999988631 1
Q ss_pred hHHHHHHHHHHHHhcCCcccccceeEEEEEEeccccc
Q 024730 186 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVL 222 (263)
Q Consensus 186 IE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~ 222 (263)
+|.+.+ +-+. ...+.+.++-+|++..
T Consensus 60 ~e~~~~----lr~~-------~~~~piI~lT~~~~~~ 85 (137)
T d1ny5a1 60 LEILKW----IKER-------SPETEVIVITGHGTIK 85 (137)
T ss_dssp HHHHHH----HHHH-------CTTSEEEEEEETTCHH
T ss_pred HHHHHH----HHHh-------CCCCCEEEEECCCCHH
Confidence 444443 3222 2335566777787643
No 17
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]}
Probab=29.59 E-value=22 Score=32.07 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHhhhhcccccCCCCccccccccCCCCCCchhhhccccceeeeecCchhhh---hhhhcCceeeccCcc
Q 024730 49 SEEERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKS---FGDKLGFATLQLNEL 125 (263)
Q Consensus 49 ~~~~r~v~E~a~LlD~~d~~~~~~~~~~~~~~~~~~~~ipt~sERFmGmKAA~VTn~~likg---fg~~lGf~V~~~~gl 125 (263)
+.-++-++++|++++.- + + ..-..++. +-...+-....++.|-|.|++++...+.+ |-..+||.+... .
T Consensus 322 ~~Td~fL~~la~~~G~~-v--~--~~i~~er~-~~~d~~~d~~~~l~Gkr~aI~gd~~~~~~l~~fL~ElG~epv~v--~ 393 (522)
T d1m1nb_ 322 DWTDEFLMKVSEISGQP-I--P--ASLTKERG-RLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHI--L 393 (522)
T ss_dssp HHHHHHHHHHHHHHCCC-C--C--HHHHHHHH-HHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHHHHTTCEEEEE--E
T ss_pred HHHHHHHHHHHHHhCCC-h--H--HHHHHHHH-HHHHHHHHHHHhcCCCEEEEECCcHHHHHHHHHHHHcCCeEEEE--e
Confidence 67778888888887631 1 0 00000000 00001223455677889999988776655 556789999544 2
Q ss_pred cccCCCCCCCChhHHHHHHHHHhccccC-cc------------cccCcccEEEEee
Q 024730 126 IETSDSLSGSPIDVVASELLKLLGLQRG-KM------------EEVSQFDLVLVHI 168 (263)
Q Consensus 126 ~g~~ds~~~~~~~~~a~~alkLLGf~eg-~~------------~~~s~fDlVFlHI 168 (263)
+.... ..+...+++.++..++..+ ++ +...+.||+|=+.
T Consensus 394 ~~~~~----~~~~~~~~~~l~~~~~g~~~~V~~~~Dl~~l~~~i~~~~pDlliG~s 445 (522)
T d1m1nb_ 394 CHNGN----KRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNS 445 (522)
T ss_dssp ETTCC----HHHHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHSCCSEEEECT
T ss_pred ecCCC----HHHHHHHHHHHhhccCCCCCEEEECCCHHHHHHHHhhCCCCEEEECC
Confidence 22222 2566667777776655432 22 2234578888653
No 18
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.13 E-value=20 Score=30.02 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=20.4
Q ss_pred CcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHh
Q 024730 159 SQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQM 199 (263)
Q Consensus 159 s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~ 199 (263)
|+-|+||||-..+.+. +| . ...+ -++..++...++..
T Consensus 171 SDlDLIfvy~~~~~~~--~~-~-~~~~~~~~~~rla~~l~~~ 208 (285)
T d1v4aa2 171 SDIDLIFAWPEHGCTQ--GG-R-RELDNAQFFTRMGQRLIKV 208 (285)
T ss_dssp CCEEEEEEECC------------CCSCHHHHHHHHHHHHHHH
T ss_pred CCcceEEEecCCCCCC--CC-c-chhHHHHHHHHHHHHHHHH
Confidence 9999999995333221 11 1 1223 67777777766554
No 19
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]}
Probab=28.29 E-value=23 Score=31.85 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHHhhhhcccccCCCCccccccccCCCCCCchhhhccccceeeeecCchhhhhh---hhcCceeeccCcc
Q 024730 49 SEEERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKSFG---DKLGFATLQLNEL 125 (263)
Q Consensus 49 ~~~~r~v~E~a~LlD~~d~~~~~~~~~~~~~~~~~~~~ipt~sERFmGmKAA~VTn~~likgfg---~~lGf~V~~~~gl 125 (263)
+.-++-++++|++++.--.-. ..-+ .....+ .+-....++.|-|.|+......+.+++ ..+||.+..+ .
T Consensus 319 ~~Td~fL~~la~~~g~~~~~~-i~~e-r~r~~d----a~~d~~~~l~GkrvaI~gd~~~~~~la~fL~ElG~e~~~v--~ 390 (519)
T d1qh8b_ 319 AATDELLMTVSQLSGKPIADA-LTLE-RGRLVD----MMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGCEPTVI--L 390 (519)
T ss_dssp HHHHHHHHHHHHHHCCCCCHH-HHHH-HHHHHH----HHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTTCEEEEE--E
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHH-HHHHHH----HHHHHHHHcCCcEEEEECCcHHHHHHHHHHHHcCCeeeEE--E
Confidence 567778888888765321100 0000 000000 022234568899999988887766544 4589998653 3
Q ss_pred cccCCCCCCCChhHHHHHHHHHhccc
Q 024730 126 IETSDSLSGSPIDVVASELLKLLGLQ 151 (263)
Q Consensus 126 ~g~~ds~~~~~~~~~a~~alkLLGf~ 151 (263)
+..... .+....++.++...+.
T Consensus 391 ~~~~~~----~~~~~~~~~l~~~~~g 412 (519)
T d1qh8b_ 391 SHNANK----RWQKAMNKMLDASPYG 412 (519)
T ss_dssp ETTCCH----HHHHHHHHHHHHSTTC
T ss_pred ecCCCH----HHHHHHHHHHHhCcCC
Confidence 333222 5667777777776543
No 20
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.72 E-value=7.3 Score=23.85 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=9.6
Q ss_pred cceecccCCCC
Q 024730 248 RQSYTMKGETP 258 (263)
Q Consensus 248 rQSYtMk~g~~ 258 (263)
-|.||||-|+|
T Consensus 11 GQry~~rd~~P 21 (32)
T d2d8za2 11 GQRFTARDDFA 21 (32)
T ss_dssp TSCCEESSSSE
T ss_pred CceeeecCCCe
Confidence 38999999987
No 21
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 666]}
Probab=27.08 E-value=32 Score=28.52 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=40.7
Q ss_pred ecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccC
Q 024730 103 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (263)
Q Consensus 103 Tn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~ 171 (263)
.+.+...-+.++.|+.+++.+++... ..+..++++.+.+ ++.|-|+||+..+
T Consensus 196 ~~~~~~~~~~~~~g~~~~~~~~~~~~-------g~~~~~~~~~~~l----------~~~~~vylS~DiD 247 (324)
T d1xfka_ 196 SNTPALFERADKLGVWYVEDKAFSPL-------SLKDHLTQLQHFI----------DDCDYLYLTIDLD 247 (324)
T ss_dssp TSCHHHHHHHHHTTCEEEEGGGCSTT-------THHHHHHHHHHHH----------HTCSEEEEEEEGG
T ss_pred CCCHHHHHHHHhcCceEEEHHHHhhh-------hhHHHHhhhHhhh----------ccCCceEEEEecc
Confidence 34555667789999999999988653 5677888888888 6779999997654
No 22
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.44 E-value=13 Score=26.13 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=30.5
Q ss_pred hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc
Q 024730 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 173 (263)
Q Consensus 107 likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ 173 (263)
.++.+-+..||+|..... ..++++++ ...+||+|++=+.+.+.
T Consensus 17 ~l~~~L~~~g~~v~~a~~----------------~~~al~~l--------~~~~~dlillD~~mp~~ 59 (121)
T d1mvoa_ 17 LLQYNLERSGYDVITASD----------------GEEALKKA--------ETEKPDLIVLDVMLPKL 59 (121)
T ss_dssp HHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HHHCCSEEEEESSCSSS
T ss_pred HHHHHHHHCCCEEEEECC----------------HHHHHHHH--------hcccccEEEecccccCC
Confidence 455566677999864432 34677777 44689999999999863
No 23
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.87 E-value=31 Score=25.31 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccCCCCceeeeeccccccccccccc
Q 024730 186 LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFP 247 (263)
Q Consensus 186 IE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~~~~~~v~~~~~e~~s~l~~L~P 247 (263)
++++=..+..+++.-.+ .+.|++|| .|++-..-.- .|.-..+.++....+..+.+
T Consensus 20 ~~~~k~~~~~~i~~l~~-----~~~rv~vv-~fs~~~~~~~-~l~~~~~~~~~~~~i~~~~~ 74 (189)
T d1n3ya_ 20 FATMMNFVRAVISQFQR-----PSTQFSLM-QFSNKFQTHF-TFEEFRRSSNPLSLLASVHQ 74 (189)
T ss_dssp HHHHHHHHHHHHTTSCT-----TTEEEEEE-EESSSEEEEE-CHHHHHHCSSGGGGGTTCCC
T ss_pred HHHHHHHHHHHHHHhCC-----CCCEEEEE-Eeeccceeec-cccccccHHHHHHHHHhhhh
Confidence 44454555666665443 35688876 7876554321 23222344555555555543
No 24
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=25.29 E-value=34 Score=26.22 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=41.1
Q ss_pred ccCCCCCCchhhhccccceeeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCc
Q 024730 81 WEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQ 160 (263)
Q Consensus 81 ~~~~~~ipt~sERFmGmKAA~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~ 160 (263)
|.+....|.+..+.+|+=|.=-.+. .+....+.+||+|+-.+--.....- .+ ...+-++| ++
T Consensus 31 w~~~~~~~~l~gk~vgIiG~G~IG~-~va~~l~~~g~~v~~~d~~~~~~~~----~~---~~~l~ell----------~~ 92 (181)
T d1qp8a1 31 YGRDVEIPLIQGEKVAVLGLGEIGT-RVGKILAALGAQVRGFSRTPKEGPW----RF---TNSLEEAL----------RE 92 (181)
T ss_dssp CCCCSCCCCCTTCEEEEESCSTHHH-HHHHHHHHTTCEEEEECSSCCCSSS----CC---BSCSHHHH----------TT
T ss_pred CCCCCCCCcccCceEEEeccccccc-cceeeeeccccccccccccccccce----ee---eechhhhh----------hc
Confidence 4444445555544444433222221 1223455669999877544222111 11 11244677 78
Q ss_pred ccEEEEeeccCCccCc
Q 024730 161 FDLVLVHIGAGEKTND 176 (263)
Q Consensus 161 fDlVFlHIka~d~ash 176 (263)
-|+|.+|+-.++++-+
T Consensus 93 sDiv~~~~pl~~~t~~ 108 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRG 108 (181)
T ss_dssp CSEEEECCCCSTTTTT
T ss_pred cchhhccccccccccc
Confidence 8999999998875443
No 25
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp (Pandalus borealis) [TaxId: 6703]}
Probab=24.73 E-value=18 Score=32.37 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 024730 134 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 202 (263)
Q Consensus 134 ~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~ 202 (263)
.+....+.++||++|. ...+-| |++|==+..|.++|..+...-+. +..+|+.|+.+++-++.
T Consensus 284 ~PsL~eMt~~AL~~L~------~n~~GF-fLmVEgg~ID~a~H~nd~~~~i~e~~~fD~AV~~a~~~~~~ 346 (476)
T d1k7ha_ 284 DPTLPEMTKVAIEMLT------KDENGF-FLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDP 346 (476)
T ss_dssp SCCHHHHHHHHHHHHT------TCTTCE-EEEEEECHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhc------cCCCce-EEEEecccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568899999999992 111122 55555666789999999988888 99999999999998753
No 26
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=23.83 E-value=29 Score=24.14 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=30.2
Q ss_pred hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc
Q 024730 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 173 (263)
Q Consensus 107 likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ 173 (263)
.++.+-...|++|.+..+ +.+|++++ ...+||+|++-+.+.+.
T Consensus 16 ~l~~~L~~~g~~v~~a~~----------------~~~al~~~--------~~~~~dlil~D~~mp~~ 58 (123)
T d1mb3a_ 16 LFHDLLEAQGYETLQTRE----------------GLSALSIA--------RENKPDLILMDIQLPEI 58 (123)
T ss_dssp HHHHHHHHTTCEEEEESC----------------HHHHHHHH--------HHHCCSEEEEESBCSSS
T ss_pred HHHHHHHHCCCEEEEECC----------------HHHHHHHH--------HhCCCCEEEEEeccCCC
Confidence 455666778998864322 25667777 34679999999999874
No 27
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.75 E-value=1.2e+02 Score=21.83 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=48.8
Q ss_pred eeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCC
Q 024730 100 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 179 (263)
Q Consensus 100 A~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~ 179 (263)
-+.|.+..+..++.+.|..++..+.-..+... .....+.++++.+ +.+|.+++.- ++.
T Consensus 48 ivstd~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~----------~~~~~iv~~~-~~~------- 105 (228)
T d1qwja_ 48 WVSTDHDEIENVAKQFGAQVHRRSSETSKDSS----TSLDAIVEFLNYH----------NEVDIVGNIQ-ATS------- 105 (228)
T ss_dssp EEEESCHHHHHHHHHTTCEEEECCGGGSSTTC----CHHHHHHHHHTTC----------TTCSEEEEEC-TTC-------
T ss_pred EEecchhhhhhhhhhcCccccccccccccccc----hhhhhhhhccccc----------cccceeeeec-ccc-------
Confidence 35677889999999999888765553322222 3444455666555 5667665443 333
Q ss_pred cccccChHHHHHHHHHHHHh
Q 024730 180 KAVAHDLEYINALVRVILQM 199 (263)
Q Consensus 180 ~~~K~dIE~iD~lVG~Im~~ 199 (263)
.=.+.+.||+++..+++.
T Consensus 106 --P~~~~~~I~~~i~~~~~~ 123 (228)
T d1qwja_ 106 --PCLHPTDLQKVAEMIREE 123 (228)
T ss_dssp --TTCCHHHHHHHHHHHHSS
T ss_pred --cccCchhhhhhhhhhhcc
Confidence 445688999999877653
No 28
>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.66 E-value=24 Score=26.26 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=27.8
Q ss_pred cCchhhhhhhh---cCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEE
Q 024730 104 TNSRLKSFGDK---LGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLV 166 (263)
Q Consensus 104 n~~likgfg~~---lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFl 166 (263)
|.++|....+. +|++|....=. + . +.+.....+.+++ ..+++|+||.
T Consensus 23 ng~~L~~~l~~~~~~G~~v~~~~iV-~---D----d~~~i~~al~~~~--------~~~~~D~ViT 72 (169)
T d1jlja_ 23 SGINLKDLVQDPSLLGGTISAYKIV-P---D----EIEEIKETLIDWC--------DEKELNLILT 72 (169)
T ss_dssp HHHHHHHHHHCTTTTCCEEEEEEEE-C---S----CHHHHHHHHHHHH--------HTSCCSEEEE
T ss_pred cHHHHHHHHHhhccCCcEEEEEEEe-c---c----chhhHHHHHHHHh--------hcccccEEEE
Confidence 44566666665 59998664322 1 1 4455555555654 3367999984
No 29
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=22.59 E-value=1.1e+02 Score=24.00 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=62.6
Q ss_pred ccceeeeec-------CchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEee
Q 024730 96 GLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 168 (263)
Q Consensus 96 GmKAA~VTn-------~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHI 168 (263)
|-|-++||. ...++.+|+.+|..++..+.- .+....+.+.++.. ....||+||+=.
T Consensus 37 g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~---------~d~~~~l~~~~~~a--------~~~~~d~ilIDT 99 (211)
T d2qy9a2 37 GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG---------ADSASVIFDAIQAA--------KARNIDVLIADT 99 (211)
T ss_dssp TCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTT---------CCHHHHHHHHHHHH--------HHTTCSEEEECC
T ss_pred CCcEEEEecccccccchhhhhhhhhhcCCcccccccC---------CCHHHHHHHHHHHH--------HHcCCCEEEecc
Confidence 566666664 578999999999998654322 24455566666543 226799999966
Q ss_pred ccCCccCcCCCcccccC-hHHHHHHHHHHHHhcCCcccccceeEEEEEEecccccccC--------CCCceeeeeccccc
Q 024730 169 GAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEAD--------NSNLSVLISIDEKS 239 (263)
Q Consensus 169 ka~d~ashdG~~~~K~d-IE~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~~~--------~~~~~v~~~~~e~~ 239 (263)
.+-. ....+ ++.|.++...+-.. ....--..||++=.++|...-+. .-.-.|++.-||..
T Consensus 100 aGr~--------~~d~~~~~el~~l~~~~~~~---~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lIlTKlDe~~ 168 (211)
T d2qy9a2 100 AGRL--------QNKSHLMEELKKIVRVMKKL---DVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTA 168 (211)
T ss_dssp CCCG--------GGHHHHHHHHHHHHHHHTTT---CTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEEEECCTTCT
T ss_pred CCCc--------cccHHHHHHHHHHHHHHhhh---cccCcceeeeehhcccCcchHHHHhhhhhccCCceEEEeecCCCC
Confidence 4321 01111 44444444332221 11122355666655666543331 11233666666653
No 30
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.67 E-value=1.2e+02 Score=23.47 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCchhhhccccceeeeecCchh------hhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccC
Q 024730 86 PFQTISDRFMGLKAALITTNSRL------KSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVS 159 (263)
Q Consensus 86 ~ipt~sERFmGmKAA~VTn~~li------kgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s 159 (263)
.|.+|++|. |+||+.+.= +.|+ +.|++|+-... + ....+++.+.|- ++| .
T Consensus 4 ~M~~lk~Kv-----~lITGas~GIG~aiA~~la-~~G~~Vv~~~r-----------~-~~~l~~~~~~l~-~~~-----~ 59 (257)
T d1xg5a_ 4 GMERWRDRL-----ALVTGASGGIGAAVARALV-QQGLKVVGCAR-----------T-VGNIEELAAECK-SAG-----Y 59 (257)
T ss_dssp TCGGGTTCE-----EEEESTTSHHHHHHHHHHH-HTTCEEEEEES-----------C-HHHHHHHHHHHH-HTT-----C
T ss_pred CCCCCCCCE-----EEEeCCCCHHHHHHHHHHH-HCCCEEEEEEC-----------C-HHHHHHHHHHHH-hcC-----C
Confidence 355566665 999998742 2222 35888854321 1 234444444441 000 1
Q ss_pred cccEEEEeeccCCccCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEE
Q 024730 160 QFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSV 214 (263)
Q Consensus 160 ~fDlVFlHIka~d~ashdG~~~~K~dIE~iD~lVG~Im~~a~~gs~i~srlhlsv 214 (263)
.-.+++++...++ -+-+++++..+.+. ..||++-|
T Consensus 60 ~~~~~~~~~Dls~-------------~~~v~~~v~~~~~~-------~g~iD~lV 94 (257)
T d1xg5a_ 60 PGTLIPYRCDLSN-------------EEDILSMFSAIRSQ-------HSGVDICI 94 (257)
T ss_dssp SSEEEEEECCTTC-------------HHHHHHHHHHHHHH-------HCCCSEEE
T ss_pred CceEEEEEccCCC-------------HHHHHHHHHHHHHh-------cCCCCEEE
Confidence 2267778777664 57788888888876 46777644
No 31
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.51 E-value=25 Score=24.55 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=30.2
Q ss_pred hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc
Q 024730 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 173 (263)
Q Consensus 107 likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ 173 (263)
.++.+-+..|++|..... ..+|++++ ...+||+|++=+.+.+.
T Consensus 15 ~l~~~L~~~g~~v~~a~~----------------~~eal~~l--------~~~~~dliilD~~mP~~ 57 (119)
T d1zh2a1 15 FLRTALEGDGMRVFEAET----------------LQRGLLEA--------ATRKPDLIILDLGLPDG 57 (119)
T ss_dssp HHHHHHHTTTCEEEEESS----------------HHHHHHHH--------HHHCCSEEEEESEETTE
T ss_pred HHHHHHHHCCCEEEEeCC----------------HHHHHHHH--------HhcCCCEEEeccccCCC
Confidence 455556677898854422 34677777 44689999999999863
No 32
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=21.28 E-value=20 Score=25.17 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=29.7
Q ss_pred hhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCc
Q 024730 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 173 (263)
Q Consensus 107 likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ 173 (263)
.++.+=+..|+.|..... .++|++++ ....||+|++-+.+++-
T Consensus 15 ~l~~~L~~~G~~v~~a~~----------------g~eal~~l--------~~~~~dliilD~~mP~~ 57 (119)
T d2pl1a1 15 HLKVQIQDAGHQVDDAED----------------AKEADYYL--------NEHIPDIAIVDLGLPDE 57 (119)
T ss_dssp HHHHHHHHTTCEEEEESS----------------HHHHHHHH--------HHSCCSEEEECSCCSSS
T ss_pred HHHHHHHHCCCEEEEECC----------------HHHHHHHH--------HhcccceeehhccCCCc
Confidence 344455667888854322 35677777 45789999999998863
No 33
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=21.22 E-value=15 Score=27.00 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=12.3
Q ss_pred CcccEEEEeeccCCc
Q 024730 159 SQFDLVLVHIGAGEK 173 (263)
Q Consensus 159 s~fDlVFlHIka~d~ 173 (263)
++.|+|+++++.-|.
T Consensus 70 ~~~D~vvi~~G~ND~ 84 (208)
T d2o14a2 70 KPGDYFMLQLGINDT 84 (208)
T ss_dssp CTTCEEEEECCTGGG
T ss_pred CCCCEEEEEcCCCcc
Confidence 668999999987663
No 34
>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli [TaxId: 562]}
Probab=20.85 E-value=1.3e+02 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCcccccceeEEEEE
Q 024730 187 EYINALVRVILQMAQPATEVGSRLHLSVV 215 (263)
Q Consensus 187 E~iD~lVG~Im~~a~~gs~i~srlhlsvv 215 (263)
+..|+.|..|++.|+.|..--+.++++=|
T Consensus 68 ~~ve~vv~~I~~~a~TG~~GDGkIfV~~V 96 (112)
T d2piia_ 68 DIVDTCVDTIIRTAQTGKIGDGKIFVFDV 96 (112)
T ss_dssp GGHHHHHHHHHHHHCCSSTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCceEEEEEEh
Confidence 68899999999999999877778877633
No 35
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}
Probab=20.38 E-value=65 Score=22.70 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=33.8
Q ss_pred eeeecCchhhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCC
Q 024730 100 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 172 (263)
Q Consensus 100 A~VTn~~likgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d 172 (263)
|+|.+...+.|| +.+|++++.+. +.+...+.+-+++ ..++|-.||++=...+
T Consensus 2 aViGd~dtv~GF-rLaGi~~~~v~------------~~ee~~~~l~~l~--------~~~d~gII~Ite~~~~ 53 (104)
T d2d00a1 2 AVIADPETAQGF-RLAGLEGYGAS------------SAEEAQSLLETLV--------ERGGYALVAVDEALLP 53 (104)
T ss_dssp EEEECHHHHHHH-HHTTSEEEECS------------SHHHHHHHHHHHH--------HHCCCSEEEEETTTCS
T ss_pred EEEcCHHHHHHH-HHcCCeeecCC------------CHHHHHHHHHHHH--------hCCCeEEEEEcHHHHH
Confidence 678888888888 68898876542 2333333333444 4578999999876443
No 36
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=20.10 E-value=55 Score=22.80 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=43.8
Q ss_pred hhhhhhhcCceeeccCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEeeccCCccCcCCCcccccChH
Q 024730 108 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLE 187 (263)
Q Consensus 108 ikgfg~~lGf~V~~~~gl~g~~ds~~~~~~~~~a~~alkLLGf~eg~~~~~s~fDlVFlHIka~d~ashdG~~~~K~dIE 187 (263)
++.+=+..|+.|.+... +.++++++ ...+||+|++=+.+.+.. .++
T Consensus 18 l~~~L~~~g~~v~~a~~----------------~~~al~~~--------~~~~~dliilD~~mp~~~----------G~~ 63 (128)
T d1yioa2 18 LRNLLRSAGFEVETFDC----------------ASTFLEHR--------RPEQHGCLVLDMRMPGMS----------GIE 63 (128)
T ss_dssp HHHHHHTTTCEEEEESS----------------HHHHHHHC--------CTTSCEEEEEESCCSSSC----------HHH
T ss_pred HHHHHHHcCCCcccccc----------------HHHHHHHH--------HhcCCCEeehhhhcccch----------hHH
Confidence 44555667888854332 36788888 457899999999988631 144
Q ss_pred HHHHHHHHHHHhcCCcccccceeEEEEEEecccccc
Q 024730 188 YINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLE 223 (263)
Q Consensus 188 ~iD~lVG~Im~~a~~gs~i~srlhlsvvlsYG~~~~ 223 (263)
.+- .+... ....++.++.+|++...
T Consensus 64 ~~~----~i~~~-------~~~~~ii~lt~~~~~~~ 88 (128)
T d1yioa2 64 LQE----QLTAI-------SDGIPIVFITAHGDIPM 88 (128)
T ss_dssp HHH----HHHHT-------TCCCCEEEEESCTTSCC
T ss_pred HHH----HHHhh-------CCCCeEEEEEEECCHHH
Confidence 332 22222 23456777788876443
Done!