BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024731
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217
ID L LE+LD+SDNA V P H L L LD L
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217
ID L LE+LD+SDNA V P H L L LD L
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 27 CLEQERYALLQL----RHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVI--KLD 80
L++ R ++++ R D L+ DDE QW++++ D ++ KL
Sbjct: 57 VLKENRKVIVKVIRVDRRKGTVDVSLKKV-TDDERRKKNLQWKKIQRLDKILELVSQKLK 115
Query: 81 LRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI---AGCVE 120
L + WE W + A P +E G I AG E
Sbjct: 116 LSEKDAWEQVAWKLEAKYGDPITAIEKAVKEGEKILIDAGVPE 158
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217
ID L LE+LD+SDNA +V P +L L LD L
Sbjct: 68 AGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 31/146 (21%)
Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXX 160
P L+ LYL N G + TLS + L L+L +N+
Sbjct: 389 PKNTLQELYLQNNGFTGKIP----PTLSNCSELVSLHLSFNYLS---------------- 428
Query: 161 XXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220
G+I L SL L +L + N + IP+EL LE LILD +DL
Sbjct: 429 --------GTIP-SSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDL-TG 477
Query: 221 QLLQSIASFTSLKYLSMGFCTLTGAL 246
++ +++ T+L ++S+ LTG +
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEI 503
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 201
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 232 LK 233
L+
Sbjct: 288 LE 289
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 201
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 232 LK 233
L+
Sbjct: 288 LE 289
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 201
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 232 LK 233
L+
Sbjct: 288 LE 289
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 205
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 232 LK 233
L+
Sbjct: 292 LE 293
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 200
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 232 LK 233
L+
Sbjct: 287 LE 288
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 168 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 204
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 232 LK 233
L+
Sbjct: 291 LE 292
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 31/146 (21%)
Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXX 160
P L+ LYL N G + TLS + L L+L +N+
Sbjct: 392 PKNTLQELYLQNNGFTGKIP----PTLSNCSELVSLHLSFNYLS---------------- 431
Query: 161 XXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220
G+I L SL L +L + N + IP+EL LE LILD +DL
Sbjct: 432 --------GTIP-SSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDL-TG 480
Query: 221 QLLQSIASFTSLKYLSMGFCTLTGAL 246
++ +++ T+L ++S+ LTG +
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEI 506
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
D+K L +L LE LD+S N ++++ + L TNLE LI
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLI 200
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231
DI L SL NL +LD+++N I+NL L T L EL L + + L + + T+
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 232 LK 233
L+
Sbjct: 287 LE 288
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIAS 228
G I+G+ L NL L++ DN I +L L N T + EL L + L + + +IA
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL---KNVSAIAG 105
Query: 229 FTSLKYLSMGFCTLT--GALHGQGKLRV 254
S+K L + +T L G L+V
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQV 133
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 94 MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXX 153
++++ F F QL+ L L ++ G + LN LK L L NHF
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKGLPSG-----MKGLNLLKKLVLSVNHFDQLCQISAAN 320
Query: 154 XXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAI 192
+ + L+ LGNL+ LD+S N I
Sbjct: 321 FPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDI 359
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIAS 228
G I+G+ L NL L++ DN I +L L N T + EL L + L + + +IA
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPL---KNVSAIAG 111
Query: 229 FTSLKYLSMGFCTLT--GALHGQGKLRV 254
S+K L + +T L G L+V
Sbjct: 112 LQSIKTLDLTSTQITDVTPLAGLSNLQV 139
>pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
pdb|2QRK|A Chain A, Crystal Structure Of Amp-Bound Saccharopine Dehydrogenase
(L-Lys Forming) From Saccharomyces Cerevisiae
pdb|2QRL|A Chain A, Crystal Structure Of Oxalylglycine-Bound Saccharopine
Dehydrogenase (L-Lys Forming) From Saccharomyces
Cerevisiae
Length = 394
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210
DIK G +E+ +D IN + + K + FTN+E+L
Sbjct: 248 DIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKL 286
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
S++ + L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
S++ + L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine
Dehydrogenase From Saccharomyces Cerevisiae.
pdb|3UH1|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cerevisiae With Bound Saccharopine And
Nadh
pdb|3UHA|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad.
pdb|3UHA|B Chain B, Crystal Structure Of Saccharopine Dehydrogenase From
Saccharomyces Cervisiae Complexed With Nad
Length = 373
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210
DIK G +E+ +D IN + + K + FTN+E+L
Sbjct: 227 DIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKL 265
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
S++ + L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
S++ + L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
S++ + L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
S++ + L L+EL+++ N I + +P+ N TNLE L L + +
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 122 EGLDTLSRLNNLKFLYLDYNH 142
EG T+SRLN++ FLYL+ N+
Sbjct: 67 EGRFTISRLNSINFLYLEMNN 87
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217
GSID + ++L LE LD+S N I L + NL+EL LD + L
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQL 383
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
NL+ LD+S NA + L I KE N + L+ L L + L S +L
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,155,332
Number of Sequences: 62578
Number of extensions: 263580
Number of successful extensions: 649
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 64
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)