Query 024731
Match_columns 263
No_of_seqs 478 out of 2940
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-29 4.9E-34 242.4 18.2 209 28-248 27-254 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.5E-20 3.2E-25 181.5 10.0 143 99-248 160-302 (968)
3 KOG0617 Ras suppressor protein 99.8 1.1E-21 2.4E-26 146.0 -4.2 163 73-254 32-195 (264)
4 KOG4194 Membrane glycoprotein 99.7 2.4E-18 5.3E-23 149.3 4.8 173 75-260 174-346 (873)
5 PLN03150 hypothetical protein; 99.7 3.4E-16 7.4E-21 143.6 14.0 157 24-192 366-527 (623)
6 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.4E-23 129.3 -1.8 150 99-260 29-178 (264)
7 KOG4194 Membrane glycoprotein 99.7 3.4E-17 7.3E-22 142.3 4.2 176 72-260 123-298 (873)
8 KOG0444 Cytoskeletal regulator 99.6 2E-16 4.3E-21 138.8 -0.2 141 97-248 144-285 (1255)
9 KOG0444 Cytoskeletal regulator 99.5 3.2E-16 7E-21 137.5 -2.6 153 76-243 80-258 (1255)
10 KOG4237 Extracellular matrix p 99.5 8.6E-16 1.9E-20 127.9 -0.3 171 73-255 66-346 (498)
11 KOG0472 Leucine-rich repeat pr 99.5 3.1E-15 6.8E-20 125.0 -2.2 152 75-243 389-541 (565)
12 KOG0472 Leucine-rich repeat pr 99.4 1.8E-15 3.9E-20 126.4 -7.0 158 77-254 140-297 (565)
13 PLN03150 hypothetical protein; 99.4 8.6E-13 1.9E-17 121.3 9.6 113 132-247 419-532 (623)
14 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-13 3.7E-18 116.2 3.8 39 205-243 250-291 (319)
15 cd00116 LRR_RI Leucine-rich re 99.4 7E-14 1.5E-18 118.6 1.3 164 73-243 80-263 (319)
16 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4.1E-17 119.8 9.9 133 103-248 302-463 (788)
17 PLN03210 Resistant to P. syrin 99.4 4.1E-12 8.8E-17 124.5 12.1 160 75-248 612-820 (1153)
18 PF14580 LRR_9: Leucine-rich r 99.4 7.1E-13 1.5E-17 101.8 5.3 129 99-237 15-147 (175)
19 PF14580 LRR_9: Leucine-rich r 99.3 1.6E-12 3.5E-17 99.8 6.1 112 127-244 15-127 (175)
20 PRK15370 E3 ubiquitin-protein 99.3 1.4E-11 3E-16 114.5 9.9 145 75-248 221-384 (754)
21 KOG0532 Leucine-rich repeat (L 99.3 4.2E-14 9.2E-19 122.8 -6.6 133 98-244 116-248 (722)
22 KOG3207 Beta-tubulin folding c 99.3 8E-13 1.7E-17 111.7 0.3 178 74-259 146-330 (505)
23 PRK15370 E3 ubiquitin-protein 99.3 3E-10 6.5E-15 105.8 17.1 41 23-66 56-99 (754)
24 KOG1259 Nischarin, modulator o 99.2 5.2E-13 1.1E-17 108.2 -1.7 134 102-248 283-416 (490)
25 KOG0618 Serine/threonine phosp 99.2 5E-13 1.1E-17 121.9 -2.7 146 102-258 358-503 (1081)
26 KOG0618 Serine/threonine phosp 99.2 4.9E-13 1.1E-17 122.0 -3.1 141 99-245 306-467 (1081)
27 PLN03210 Resistant to P. syrin 99.2 1.3E-10 2.8E-15 114.1 13.1 141 101-255 609-750 (1153)
28 PRK15387 E3 ubiquitin-protein 99.2 7.9E-11 1.7E-15 109.3 9.5 94 75-194 223-316 (788)
29 KOG0532 Leucine-rich repeat (L 99.2 9.2E-13 2E-17 114.7 -3.5 165 76-262 77-241 (722)
30 KOG4237 Extracellular matrix p 99.2 3.5E-12 7.6E-17 106.7 -0.3 84 104-192 68-152 (498)
31 KOG1259 Nischarin, modulator o 99.1 5.7E-12 1.2E-16 102.3 -0.7 131 74-220 284-414 (490)
32 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.9E-15 73.1 3.3 61 180-242 1-61 (61)
33 COG4886 Leucine-rich repeat (L 99.0 2E-10 4.3E-15 100.6 3.7 155 75-248 117-295 (394)
34 PF13855 LRR_8: Leucine rich r 99.0 3.2E-10 6.8E-15 72.0 3.5 58 132-190 2-59 (61)
35 COG4886 Leucine-rich repeat (L 99.0 2.1E-10 4.7E-15 100.3 2.9 123 78-216 97-220 (394)
36 PF08263 LRRNT_2: Leucine rich 98.9 3.4E-09 7.4E-14 62.0 4.6 40 29-70 2-43 (43)
37 KOG1909 Ran GTPase-activating 98.9 9.6E-10 2.1E-14 90.9 2.3 41 103-143 92-132 (382)
38 KOG3207 Beta-tubulin folding c 98.9 6.9E-10 1.5E-14 94.2 1.3 165 73-244 171-340 (505)
39 KOG1909 Ran GTPase-activating 98.8 1.7E-09 3.6E-14 89.5 1.2 167 74-242 92-310 (382)
40 KOG1859 Leucine-rich repeat pr 98.7 9.7E-11 2.1E-15 105.0 -8.2 128 104-243 165-292 (1096)
41 KOG0531 Protein phosphatase 1, 98.6 1E-08 2.2E-13 90.3 0.9 109 99-218 91-199 (414)
42 KOG0531 Protein phosphatase 1, 98.6 1.5E-08 3.2E-13 89.4 0.9 128 102-243 71-199 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 5.3E-08 1.2E-12 92.4 4.5 128 103-237 545-675 (889)
44 KOG1859 Leucine-rich repeat pr 98.6 4.2E-09 9.1E-14 94.7 -2.9 106 131-245 164-269 (1096)
45 KOG2982 Uncharacterized conser 98.5 3.6E-08 7.8E-13 80.3 2.4 166 74-246 71-265 (418)
46 KOG4658 Apoptotic ATPase [Sign 98.4 1.8E-07 3.8E-12 88.9 4.7 104 132-239 546-651 (889)
47 KOG4579 Leucine-rich repeat (L 98.4 1.8E-08 3.9E-13 73.0 -2.0 108 104-218 28-136 (177)
48 COG5238 RNA1 Ran GTPase-activa 98.4 1.6E-07 3.5E-12 75.6 2.8 144 99-243 88-255 (388)
49 KOG1644 U2-associated snRNP A' 98.4 7.4E-07 1.6E-11 68.8 5.8 109 102-216 41-151 (233)
50 KOG4579 Leucine-rich repeat (L 98.4 1.1E-08 2.4E-13 74.1 -4.4 114 99-221 49-162 (177)
51 PF12799 LRR_4: Leucine Rich r 98.3 1.3E-06 2.8E-11 51.1 4.1 37 205-243 1-37 (44)
52 KOG3665 ZYG-1-like serine/thre 98.3 4.4E-07 9.5E-12 84.1 2.5 141 103-248 122-268 (699)
53 PF12799 LRR_4: Leucine Rich r 98.3 1.4E-06 3E-11 51.0 3.7 36 132-168 2-37 (44)
54 KOG2120 SCF ubiquitin ligase, 98.1 4.1E-08 8.8E-13 80.0 -5.9 138 99-241 206-349 (419)
55 KOG1644 U2-associated snRNP A' 98.1 4.9E-06 1.1E-10 64.3 5.6 108 130-240 41-150 (233)
56 KOG2982 Uncharacterized conser 98.0 1.5E-06 3.2E-11 71.1 0.1 141 101-243 69-237 (418)
57 KOG3665 ZYG-1-like serine/thre 97.9 8.9E-06 1.9E-10 75.6 3.8 155 74-236 122-281 (699)
58 KOG2120 SCF ubiquitin ligase, 97.8 2.2E-07 4.8E-12 75.8 -6.8 136 104-242 186-325 (419)
59 KOG2739 Leucine-rich acidic nu 97.8 1.6E-05 3.4E-10 63.9 2.6 66 127-194 61-130 (260)
60 COG5238 RNA1 Ran GTPase-activa 97.7 6E-05 1.3E-09 61.2 5.2 167 73-243 29-227 (388)
61 KOG2739 Leucine-rich acidic nu 97.7 2.2E-05 4.7E-10 63.1 2.6 107 129-238 41-151 (260)
62 KOG2123 Uncharacterized conser 97.7 1.6E-06 3.5E-11 70.2 -4.2 103 129-236 17-123 (388)
63 PRK15386 type III secretion pr 97.7 0.00023 4.9E-09 61.8 8.3 69 75-166 53-123 (426)
64 PF13306 LRR_5: Leucine rich r 97.6 0.00034 7.3E-09 50.9 6.9 36 127-163 31-66 (129)
65 KOG2123 Uncharacterized conser 97.5 3.3E-06 7.1E-11 68.5 -4.4 103 101-211 17-123 (388)
66 PF13306 LRR_5: Leucine rich r 97.4 0.00076 1.7E-08 49.0 7.2 122 126-257 7-128 (129)
67 PRK15386 type III secretion pr 97.1 0.0011 2.4E-08 57.6 6.2 120 99-240 48-187 (426)
68 PF00560 LRR_1: Leucine Rich R 96.6 0.00098 2.1E-08 32.5 1.2 19 133-152 2-20 (22)
69 PF00560 LRR_1: Leucine Rich R 96.5 0.0014 3.1E-08 31.9 1.2 21 231-253 1-21 (22)
70 KOG4308 LRR-containing protein 96.3 2.7E-05 5.9E-10 69.4 -9.6 91 76-167 89-184 (478)
71 PF13504 LRR_7: Leucine rich r 95.3 0.013 2.9E-07 26.5 1.6 13 231-243 2-14 (17)
72 KOG4308 LRR-containing protein 95.2 0.00024 5.1E-09 63.5 -8.4 171 73-244 114-304 (478)
73 KOG1947 Leucine rich repeat pr 95.2 0.013 2.9E-07 52.3 2.5 38 179-216 268-306 (482)
74 KOG1947 Leucine rich repeat pr 94.6 0.011 2.5E-07 52.8 0.4 116 128-243 185-308 (482)
75 KOG0473 Leucine-rich repeat pr 93.6 0.0015 3.3E-08 52.1 -6.2 84 73-168 41-124 (326)
76 smart00370 LRR Leucine-rich re 93.3 0.065 1.4E-06 27.0 1.7 18 230-248 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 93.3 0.065 1.4E-06 27.0 1.7 18 230-248 2-19 (26)
78 KOG0473 Leucine-rich repeat pr 92.7 0.0017 3.6E-08 51.8 -7.2 88 98-193 37-124 (326)
79 PF13516 LRR_6: Leucine Rich r 92.6 0.044 9.6E-07 27.1 0.5 13 206-218 3-15 (24)
80 smart00369 LRR_TYP Leucine-ric 92.6 0.15 3.3E-06 25.6 2.5 14 181-194 3-16 (26)
81 smart00370 LRR Leucine-rich re 92.6 0.15 3.3E-06 25.6 2.5 14 181-194 3-16 (26)
82 KOG4341 F-box protein containi 91.2 0.12 2.6E-06 44.9 1.7 139 101-242 292-438 (483)
83 KOG3864 Uncharacterized conser 91.0 0.033 7.1E-07 43.6 -1.7 83 132-215 102-186 (221)
84 KOG3864 Uncharacterized conser 89.9 0.071 1.5E-06 41.7 -0.6 83 156-240 102-186 (221)
85 KOG4341 F-box protein containi 84.1 0.97 2.1E-05 39.5 2.9 135 100-237 317-459 (483)
86 smart00364 LRR_BAC Leucine-ric 83.2 0.75 1.6E-05 23.3 1.1 18 230-248 2-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 83.1 1.2 2.6E-05 22.6 1.8 14 131-144 2-15 (26)
88 smart00368 LRR_RI Leucine rich 81.8 1.2 2.7E-05 22.8 1.7 13 206-218 3-15 (28)
89 KOG3763 mRNA export factor TAP 79.2 1 2.2E-05 40.6 1.4 62 153-218 216-283 (585)
90 KOG3763 mRNA export factor TAP 68.8 2.5 5.3E-05 38.3 1.2 14 102-115 217-230 (585)
91 PTZ00459 mucin-associated surf 56.8 8.2 0.00018 32.5 2.1 28 1-29 1-28 (291)
92 smart00367 LRR_CC Leucine-rich 49.6 13 0.00028 18.4 1.4 11 131-141 2-12 (26)
93 TIGR00864 PCC polycystin catio 44.8 18 0.00039 39.5 2.7 33 161-194 1-33 (2740)
94 KOG4242 Predicted myosin-I-bin 42.1 64 0.0014 29.2 5.3 94 73-167 164-280 (553)
95 TIGR00864 PCC polycystin catio 37.4 22 0.00047 39.0 2.0 32 109-144 1-32 (2740)
96 PF03823 Neurokinin_B: Neuroki 23.9 83 0.0018 19.1 2.1 23 9-31 5-27 (59)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.3e-29 Score=242.38 Aligned_cols=209 Identities=26% Similarity=0.401 Sum_probs=131.7
Q ss_pred cHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcE
Q 024731 28 LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLES 107 (263)
Q Consensus 28 ~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 107 (263)
+++|+.||++||+++.++.....+|+ ...+||.|.||.|++ .++|+.++++++.+.. . .+..+..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~--~---~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISG--K---ISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccc--c---CChHHhCCCCCCE
Confidence 56899999999999975555678997 467899999999985 5799999999988742 1 1234555666666
Q ss_pred EEccCcccCCCCCccccc-------------------ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC
Q 024731 108 LYLIGNNIAGCVENEGLD-------------------TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI 168 (263)
Q Consensus 108 L~l~~n~l~~~~~~~~~~-------------------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 168 (263)
|++++|.+.+.+|...+. ....+++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 666666665544432100 0123444555555555555555555666666666666666665
Q ss_pred CCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 169 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+.+|. .+.++++|++|++++|.+.+.+|.. ++++++|++|++++|.+++.. |..++++++|++|++++|.+++.+|.
T Consensus 178 ~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 178 GKIPN-SLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred ccCCh-hhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccCh
Confidence 55555 5556666666666666665555444 556666666666666665555 55566666666666666666555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=1.5e-20 Score=181.46 Aligned_cols=143 Identities=31% Similarity=0.387 Sum_probs=74.3
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
++.+++|++|++++|.+.+..|.. +.++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|. .+..
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~ 234 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGG 234 (968)
T ss_pred HhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhc
Confidence 444555555555555555444432 44555555555555555555555555555555555555555544444 4555
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+++|++|++++|.+.+.+|.. ++++++|++|++++|.+++.. |..+..+++|++|++++|.+++.+|.
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCCh
Confidence 555555555555555444443 555555555555555555444 44555555555555555555554444
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-21 Score=145.95 Aligned_cols=163 Identities=25% Similarity=0.307 Sum_probs=142.4
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
...++.+.+++|.+. +.+..++.+.+|+.|++++|+++..++. ++.+++|+.|+++.|.+. ..|..|+
T Consensus 32 ~s~ITrLtLSHNKl~------~vppnia~l~nlevln~~nnqie~lp~~-----issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT------VVPPNIAELKNLEVLNLSNNQIEELPTS-----ISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCcee------ecCCcHHHhhhhhhhhcccchhhhcChh-----hhhchhhhheecchhhhh-cCccccC
Confidence 457889999999885 3355689999999999999999877665 899999999999999998 8899999
Q ss_pred CCCCCCEEEcCCCcCCCC-cCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731 153 GLSSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 231 (263)
.++.|++||+.+|++... +|. .|..+..|+.|+++.|.+.- +|+. ++++++|+.|.+.+|.+- .. |..++.+++
T Consensus 100 s~p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe~-lp~d-vg~lt~lqil~lrdndll-~l-pkeig~lt~ 174 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFEI-LPPD-VGKLTNLQILSLRDNDLL-SL-PKEIGDLTR 174 (264)
T ss_pred CCchhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCccc-CChh-hhhhcceeEEeeccCchh-hC-cHHHHHHHH
Confidence 999999999999998754 565 88899999999999999987 7777 999999999999999986 45 899999999
Q ss_pred CCEEEecCcccccccCccchhcH
Q 024731 232 LKYLSMGFCTLTGALHGQGKLRV 254 (263)
Q Consensus 232 L~~L~l~~n~l~~~~p~~~l~~L 254 (263)
|++|++.+|+++ .+|+ .+.++
T Consensus 175 lrelhiqgnrl~-vlpp-el~~l 195 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPP-ELANL 195 (264)
T ss_pred HHHHhcccceee-ecCh-hhhhh
Confidence 999999999999 5565 34444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.4e-18 Score=149.29 Aligned_cols=173 Identities=24% Similarity=0.261 Sum_probs=120.9
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.+.+++|++|+++.. ....|..+.+|..|.|+.|+++..++. .|+++++|+.|+|..|.+...--..|.++
T Consensus 174 ni~~L~La~N~It~l-----~~~~F~~lnsL~tlkLsrNrittLp~r----~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 174 NIKKLNLASNRITTL-----ETGHFDSLNSLLTLKLSRNRITTLPQR----SFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CceEEeecccccccc-----ccccccccchheeeecccCcccccCHH----HhhhcchhhhhhccccceeeehhhhhcCc
Confidence 345555555555432 233455666666666666666655443 26667777777777777653223456667
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|+.|.+..|.+. .+....|..+.++++|+|+.|++... -.+++.++++|++|++++|.|.... ++.+...++|++
T Consensus 245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~ 321 (873)
T KOG4194|consen 245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKE 321 (873)
T ss_pred hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhh-hcccccccchhhhhccchhhhheee-cchhhhccccee
Confidence 77777777777765 34444777888899999999988773 4455888999999999999998655 889999999999
Q ss_pred EEecCcccccccCccchhcHHHHHHH
Q 024731 235 LSMGFCTLTGALHGQGKLRVSEAFMI 260 (263)
Q Consensus 235 L~l~~n~l~~~~p~~~l~~L~~L~~~ 260 (263)
|+|++|+++ .+++..|..|+.|..+
T Consensus 322 LdLs~N~i~-~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 322 LDLSSNRIT-RLDEGSFRVLSQLEEL 346 (873)
T ss_pred Eeccccccc-cCChhHHHHHHHhhhh
Confidence 999999998 5666566666666554
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=3.4e-16 Score=143.58 Aligned_cols=157 Identities=29% Similarity=0.377 Sum_probs=100.1
Q ss_pred cCCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCCCCceEEcCC--C--CcEEEEecCCCCCccccccccccccc
Q 024731 24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDT--T--GRVIKLDLRDTRNWESAEWYMNASLF 99 (263)
Q Consensus 24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~~ 99 (263)
...+.++|.+||..+|+.+..+. ..+|.+..+.+..|.|.||.|... . ..|+.|+|+++.+. |. .+..+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~---ip~~i 438 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GF---IPNDI 438 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--cc---CCHHH
Confidence 34677889999999999986332 248972111111237999999531 1 24677777777663 22 13345
Q ss_pred cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC-
Q 024731 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS- 178 (263)
Q Consensus 100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~- 178 (263)
..+++|+.|+|++|.+.+.+|.. +..+++|+.|+|++|++++.+|..++++++|++|++++|.++|.+|. .+..
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~ 513 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGR 513 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhc
Confidence 66677777777777776666643 66677777777777777777777777777777777777777766665 4443
Q ss_pred CCCCCEEEcCCCCC
Q 024731 179 LGNLEELDMSDNAI 192 (263)
Q Consensus 179 l~~L~~L~L~~n~l 192 (263)
..++..+++.+|..
T Consensus 514 ~~~~~~l~~~~N~~ 527 (623)
T PLN03150 514 LLHRASFNFTDNAG 527 (623)
T ss_pred cccCceEEecCCcc
Confidence 23455666666653
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-18 Score=129.27 Aligned_cols=150 Identities=26% Similarity=0.332 Sum_probs=129.6
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+..+..++.|.+++|.++...|. +..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|. .|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGS 100 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCC
Confidence 45677889999999999987776 789999999999999998 78999999999999999999987 6787 9999
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
++.|+.||+.+|++.....++.|..++.|+.|++++|.+. .. |..++++++|+.|.+..|.+- .+|. .+..|+.|.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~l-p~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lr 176 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-IL-PPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLR 176 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cC-ChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHH
Confidence 9999999999999976654555778889999999999996 45 899999999999999999987 6787 455555554
Q ss_pred HH
Q 024731 259 MI 260 (263)
Q Consensus 259 ~~ 260 (263)
.+
T Consensus 177 el 178 (264)
T KOG0617|consen 177 EL 178 (264)
T ss_pred HH
Confidence 44
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=3.4e-17 Score=142.28 Aligned_cols=176 Identities=22% Similarity=0.254 Sum_probs=130.1
Q ss_pred CCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC
Q 024731 72 TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151 (263)
Q Consensus 72 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 151 (263)
..++++.++|.+|.+.. +..+.+..++.|+.||||.|.|+....+ +|..-.++++|+|++|.|+..-...|
T Consensus 123 ~sghl~~L~L~~N~I~s-----v~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISS-----VTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred cccceeEEeeecccccc-----ccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccccc
Confidence 35788999999998753 4456678888999999999988765443 36777889999999999987767788
Q ss_pred CCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 231 (263)
.++.+|..|.|+.|+++ .+|...|.+++.|+.|+|..|.+.-.-... |..+++|+.|.+..|.+.... ...|-.+.+
T Consensus 194 ~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~k 270 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLD-DGAFYGLEK 270 (873)
T ss_pred cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCccccc-Ccceeeecc
Confidence 88889999999999987 567768888999999999998876532222 677777777777777776443 455666777
Q ss_pred CCEEEecCcccccccCccchhcHHHHHHH
Q 024731 232 LKYLSMGFCTLTGALHGQGKLRVSEAFMI 260 (263)
Q Consensus 232 L~~L~l~~n~l~~~~p~~~l~~L~~L~~~ 260 (263)
+++|+|..|+++ .+-.+++-+|+.|+++
T Consensus 271 me~l~L~~N~l~-~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 271 MEHLNLETNRLQ-AVNEGWLFGLTSLEQL 298 (873)
T ss_pred cceeecccchhh-hhhcccccccchhhhh
Confidence 777777777776 3444455555555554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=2e-16 Score=138.81 Aligned_cols=141 Identities=27% Similarity=0.316 Sum_probs=72.4
Q ss_pred ccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC-CCcCccc
Q 024731 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI-GSIDIKG 175 (263)
Q Consensus 97 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~ 175 (263)
+.|.+++.|-.||||+|++...+|. ...+.+|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|. .
T Consensus 144 ~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-s 217 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-S 217 (1255)
T ss_pred hHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-c
Confidence 3455555555555555555544443 445555555555555543211112222333333333333211 12444 5
Q ss_pred cCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 176 LDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 176 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+..+.+|..+|++.|++.. +|.. +.++++|+.|+|++|+|+. . ....+...+|++|++|.|+++ .+|+
T Consensus 218 ld~l~NL~dvDlS~N~Lp~-vPec-ly~l~~LrrLNLS~N~ite-L-~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPI-VPEC-LYKLRNLRRLNLSGNKITE-L-NMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hhhhhhhhhccccccCCCc-chHH-HhhhhhhheeccCcCceee-e-eccHHHHhhhhhhccccchhc-cchH
Confidence 5556666666666666655 4444 6666666666666666652 2 334455555666666666665 4555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.54 E-value=3.2e-16 Score=137.51 Aligned_cols=153 Identities=24% Similarity=0.283 Sum_probs=80.3
Q ss_pred EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccc-cCCCC
Q 024731 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGL 154 (263)
Q Consensus 76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l 154 (263)
++++++..|++...|. +..+..+..|+.||||+|++...+.. +..-+++-+|+||+|+|. .+|. .|.++
T Consensus 80 LRsv~~R~N~LKnsGi----P~diF~l~dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGI----PTDIFRLKDLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hHHHhhhccccccCCC----Cchhcccccceeeecchhhhhhcchh-----hhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 3444444454443332 23344555555566666655443222 444455555555555555 3333 33455
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC-------------------------CCchhhhcCCCCCcE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-------------------------LVIPKELHNFTNLEE 209 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-------------------------~~~~~~l~~l~~L~~ 209 (263)
..|-+|||++|++. .+|+ ....+..|++|+|++|.+.. .+|.. +..+.+|..
T Consensus 150 tDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~d 226 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRD 226 (1255)
T ss_pred HhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhh
Confidence 55555555555544 3444 44555555555555554322 12332 555556666
Q ss_pred EEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
+|++.|.+. .. |+.+-++++|+.|+||+|+++
T Consensus 227 vDlS~N~Lp-~v-Pecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 227 VDLSENNLP-IV-PECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ccccccCCC-cc-hHHHhhhhhhheeccCcCcee
Confidence 666666665 33 666677777777777777766
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=8.6e-16 Score=127.92 Aligned_cols=171 Identities=22% Similarity=0.257 Sum_probs=120.3
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccC-CcCCcccccc-
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSS- 150 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~- 150 (263)
....++|+|..|++.. +++..|..+++|+.|||++|+|+...|.. |.+++++..|-+.+ |+|+...-..
T Consensus 66 P~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CCcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 3467899999998863 56778999999999999999998777754 66666665555544 6655321122
Q ss_pred -----------------------------------------------CCCCCCCCEEEcCCCcC----------------
Q 024731 151 -----------------------------------------------LGGLSSLRNLSLIGNRL---------------- 167 (263)
Q Consensus 151 -----------------------------------------------l~~l~~L~~L~L~~n~l---------------- 167 (263)
|..+..++.+.+..|.+
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 22333333333333321
Q ss_pred ---------------------------------------------CCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhc
Q 024731 168 ---------------------------------------------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH 202 (263)
Q Consensus 168 ---------------------------------------------~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 202 (263)
.+..|...|..+++|+.|+|++|.++. +.+.+|.
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe 295 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFE 295 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhc
Confidence 112333456678999999999999988 4455689
Q ss_pred CCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731 203 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS 255 (263)
Q Consensus 203 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~ 255 (263)
...+++.|.|..|++.... ...|.++..|+.|+|.+|+|+...|. .|..+.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~ 346 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLF 346 (498)
T ss_pred chhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecc-cccccc
Confidence 9999999999999987444 56788999999999999999966555 444333
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=3.1e-15 Score=124.98 Aligned_cols=152 Identities=29% Similarity=0.352 Sum_probs=121.0
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcE-EEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLES-LYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
-|+.++++.|++.+.+. .+..++.+.+ +.+++|.+ +.+|.+ ++.+++|..|+|++|.+. .+|..++.
T Consensus 389 ~Vt~VnfskNqL~elPk------~L~~lkelvT~l~lsnn~i-sfv~~~----l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPK------RLVELKELVTDLVLSNNKI-SFVPLE----LSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred ceEEEecccchHhhhhh------hhHHHHHHHHHHHhhcCcc-ccchHH----HHhhhcceeeecccchhh-hcchhhhh
Confidence 48888898888764322 2333444433 44555544 445543 889999999999999998 78999999
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+..|+.|+++.|+|. .+|. .+..+..++.+-.++|++....+. .+.++.+|..||+.+|.+. .+ |+.++++++|+
T Consensus 457 lv~Lq~LnlS~NrFr-~lP~-~~y~lq~lEtllas~nqi~~vd~~-~l~nm~nL~tLDL~nNdlq-~I-Pp~LgnmtnL~ 531 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFR-MLPE-CLYELQTLETLLASNNQIGSVDPS-GLKNMRNLTTLDLQNNDLQ-QI-PPILGNMTNLR 531 (565)
T ss_pred hhhhheecccccccc-cchH-HHhhHHHHHHHHhccccccccChH-HhhhhhhcceeccCCCchh-hC-Chhhcccccee
Confidence 999999999999986 6786 666777788888888999875444 4999999999999999997 56 89999999999
Q ss_pred EEEecCcccc
Q 024731 234 YLSMGFCTLT 243 (263)
Q Consensus 234 ~L~l~~n~l~ 243 (263)
+|++++|+|.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999998
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.41 E-value=1.8e-15 Score=126.43 Aligned_cols=158 Identities=23% Similarity=0.268 Sum_probs=125.8
Q ss_pred EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
..++..+|++... +..+..+.++..+++.+|.+....|.. -.++.|++||...|-++ .+|..++.+.+
T Consensus 140 ~dl~~~~N~i~sl------p~~~~~~~~l~~l~~~~n~l~~l~~~~-----i~m~~L~~ld~~~N~L~-tlP~~lg~l~~ 207 (565)
T KOG0472|consen 140 EDLDATNNQISSL------PEDMVNLSKLSKLDLEGNKLKALPENH-----IAMKRLKHLDCNSNLLE-TLPPELGGLES 207 (565)
T ss_pred hhhhccccccccC------chHHHHHHHHHHhhccccchhhCCHHH-----HHHHHHHhcccchhhhh-cCChhhcchhh
Confidence 4455566665321 334566777888888888888776653 33888999999999887 88999999999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEE
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS 236 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~ 236 (263)
|+-|++..|.+. .+| .|.++..|++++++.|.+.. +|.+...+++++.+||+++|+++ +. |+.+..+++|+.||
T Consensus 208 L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk-e~-Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 208 LELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK-EV-PDEICLLRSLERLD 281 (565)
T ss_pred hHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccc-cC-chHHHHhhhhhhhc
Confidence 999999999986 577 68899999999999999887 67775678999999999999998 55 88899999999999
Q ss_pred ecCcccccccCccchhcH
Q 024731 237 MGFCTLTGALHGQGKLRV 254 (263)
Q Consensus 237 l~~n~l~~~~p~~~l~~L 254 (263)
+|+|.+++..++ +.++
T Consensus 282 lSNN~is~Lp~s--Lgnl 297 (565)
T KOG0472|consen 282 LSNNDISSLPYS--LGNL 297 (565)
T ss_pred ccCCccccCCcc--cccc
Confidence 999999965444 4444
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=8.6e-13 Score=121.30 Aligned_cols=113 Identities=23% Similarity=0.226 Sum_probs=96.2
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEE
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 211 (263)
.++.|+|++|.+++.+|..++.+++|+.|+|++|.+.|.+|. .+..+++|+.|+|++|.+++.+|.. ++++++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence 377889999999999999999999999999999999988887 7889999999999999999888776 88999999999
Q ss_pred cCCCCCCcccchhhhhcC-CCCCEEEecCcccccccC
Q 024731 212 LDDSDLHISQLLQSIASF-TSLKYLSMGFCTLTGALH 247 (263)
Q Consensus 212 l~~n~l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p 247 (263)
+++|+++|.+ |..++.. .++..+++.+|......|
T Consensus 497 Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRV-PAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccC-ChHHhhccccCceEEecCCccccCCC
Confidence 9999999888 8877753 467788888887554444
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=1.7e-13 Score=116.22 Aligned_cols=39 Identities=23% Similarity=0.138 Sum_probs=17.6
Q ss_pred CCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731 205 TNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 205 ~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
+.|++|++++|.+++.. +.+.+..+++|+++++++|.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 44555555555543211 0223334445555555555554
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=7e-14 Score=118.62 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=118.5
Q ss_pred CCcEEEEecCCCCCccccccccccccccCC---cCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCcc--
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPF---QQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNS-- 146 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~-- 146 (263)
..+++.++++++.+..... ..+..+ ++|++|++++|.+++.........+..+ ++|++|++++|.+++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~-----~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 80 GCGLQELDLSDNALGPDGC-----GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred cCceeEEEccCCCCChhHH-----HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 4589999999998753221 122333 4599999999998753332222345666 8999999999999843
Q ss_pred --ccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCC
Q 024731 147 --IFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDL 217 (263)
Q Consensus 147 --~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l 217 (263)
++..+..+++|++|++++|.+.+. ++. .+..+++|++|++++|.+.+.... ..+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 344567778999999999998743 222 455667999999999998754221 1256788999999999999
Q ss_pred Ccccchhhhh-c----CCCCCEEEecCcccc
Q 024731 218 HISQLLQSIA-S----FTSLKYLSMGFCTLT 243 (263)
Q Consensus 218 ~~~~~~~~l~-~----l~~L~~L~l~~n~l~ 243 (263)
++.. ...+. . .++|+.|++++|.++
T Consensus 234 ~~~~-~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 234 TDAG-AAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred chHH-HHHHHHHHhccCCCceEEEccCCCCC
Confidence 8644 33333 2 379999999999987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=1.9e-12 Score=119.85 Aligned_cols=133 Identities=22% Similarity=0.208 Sum_probs=86.3
Q ss_pred cCCcEEEccCcccCCCCCc--cc---------ccccCCC-CCCCEEEccCCcCCccccccCCC-----------------
Q 024731 103 QQLESLYLIGNNIAGCVEN--EG---------LDTLSRL-NNLKFLYLDYNHFNNSIFSSLGG----------------- 153 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~--~~---------~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~----------------- 153 (263)
++|+.|++++|.+++..+. .. ...+..+ .+|++|+|++|++++ +|....+
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l 380 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPAL 380 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCccc
Confidence 5677777777777653220 00 0001111 367888888888773 4432111
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
..+|+.|++++|.+++ +|. . .++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+ |..+.++++|+
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~-l---~s~L~~LdLS~N~Lss-IP~l----~~~L~~L~Ls~NqLt-~L-P~sl~~L~~L~ 448 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPV-L---PSELKELMVSGNRLTS-LPML----PSGLLSLSVYRNQLT-RL-PESLIHLSSET 448 (788)
T ss_pred ccccceEEecCCcccC-CCC-c---ccCCCEEEccCCcCCC-CCcc----hhhhhhhhhccCccc-cc-ChHHhhccCCC
Confidence 1256666777776653 443 2 2567777888887776 5532 246778888999887 56 88899999999
Q ss_pred EEEecCcccccccCc
Q 024731 234 YLSMGFCTLTGALHG 248 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~ 248 (263)
.|++++|++++.+|.
T Consensus 449 ~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 449 TVNLEGNPLSERTLQ 463 (788)
T ss_pred eEECCCCCCCchHHH
Confidence 999999999988766
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=4.1e-12 Score=124.52 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=101.4
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.++.|+++++.+... +..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..++++
T Consensus 612 ~L~~L~L~~s~l~~L------~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGSKLEKL------WDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCcccccc------ccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 455666666655422 12345677888888887765555554 6677888888888876666777777888
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC--------------------Cchhh--------------
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--------------------VIPKE-------------- 200 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--------------------~~~~~-------------- 200 (263)
++|+.|++++|...+.+|. .+ ++++|++|++++|..... +|...
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccc
Confidence 8888888887765555664 33 455555555555432211 22110
Q ss_pred ---------------hcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 201 ---------------LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 201 ---------------l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
....++|+.|++++|...+.+ |..++++++|+.|++++|..-+.+|.
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 001246677777777666566 77888888888888888765456775
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=7.1e-13 Score=101.76 Aligned_cols=129 Identities=34% Similarity=0.453 Sum_probs=49.8
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccC-CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc-
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL- 176 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~- 176 (263)
+.+..++++|+|++|.|+.. .. +. .+.+|+.|++++|.++. + +.+..+++|++|++++|+++. ++. .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e~-----L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~-~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-EN-----LGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISE-GLD 84 (175)
T ss_dssp ----------------------S-------TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CH-HHH
T ss_pred cccccccccccccccccccc-cc-----hhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-ccc-chH
Confidence 34445678889999888753 22 44 57788999999999884 3 357778889999999998874 543 33
Q ss_pred CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccc--hhhhhcCCCCCEEEe
Q 024731 177 DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL--LQSIASFTSLKYLSM 237 (263)
Q Consensus 177 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~l~~L~~L~l 237 (263)
..+++|++|++++|++.....-..+..+++|++|++.+|++....- ...+..+|+|+.||-
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 3578899999999988764322337788899999999998864320 234678888888874
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=1.6e-12 Score=99.77 Aligned_cols=112 Identities=29% Similarity=0.403 Sum_probs=45.9
Q ss_pred cCCCCCCCEEEccCCcCCccccccCC-CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 205 (263)
+.+..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.+. .++ .+..++.|++|++++|.++. +.......++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 5566789999999999983 3 3565 5889999999999988 454 68889999999999999998 4443124689
Q ss_pred CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 244 (263)
+|++|++++|++........+..+++|+.|++.+|+++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999999999999764324678899999999999999984
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.4e-11 Score=114.54 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=79.7
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.++.|++++|.+..... . + ...|+.|++++|.+.. +|.. + ..+|++|++++|+++ .+|..+.
T Consensus 221 nL~~L~Ls~N~LtsLP~-----~-l--~~~L~~L~Ls~N~L~~-LP~~----l--~s~L~~L~Ls~N~L~-~LP~~l~-- 282 (754)
T PRK15370 221 NIKTLYANSNQLTSIPA-----T-L--PDTIQEMELSINRITE-LPER----L--PSALQSLDLFHNKIS-CLPENLP-- 282 (754)
T ss_pred CCCEEECCCCccccCCh-----h-h--hccccEEECcCCccCc-CChh----H--hCCCCEEECcCCccC-ccccccC--
Confidence 56778888877653211 1 1 1246666666666553 2221 1 134555555555555 3444332
Q ss_pred CCCCEEEcCCCcCCCCcCcccc-------------------CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCC
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGL-------------------DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~-------------------~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 215 (263)
++|++|++++|++++ +|. .+ .-.++|++|++++|.++. +|.. + .++|+.|++++|
T Consensus 283 ~sL~~L~Ls~N~Lt~-LP~-~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N 356 (754)
T PRK15370 283 EELRYLSVYDNSIRT-LPA-HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPAS-L--PPELQVLDVSKN 356 (754)
T ss_pred CCCcEEECCCCcccc-Ccc-cchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChh-h--cCcccEEECCCC
Confidence 345555555555442 221 11 012456777777777665 4443 3 257888888888
Q ss_pred CCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 216 DLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 216 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+++ .+ |..+. ++|++|++++|+++ .+|.
T Consensus 357 ~L~-~L-P~~lp--~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 357 QIT-VL-PETLP--PTITTLDVSRNALT-NLPE 384 (754)
T ss_pred CCC-cC-Chhhc--CCcCEEECCCCcCC-CCCH
Confidence 876 34 55442 57888888888887 4565
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=4.2e-14 Score=122.84 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=96.5
Q ss_pred cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (263)
.+..+..|+++|++.|+++-..+. ++.++ |+.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|. .++
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~-----lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-ql~ 186 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDG-----LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-QLG 186 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChh-----hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-Hhh
Confidence 355666777777777777654443 34443 777777777777 67777777777778888888766 4665 777
Q ss_pred CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731 178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 244 (263)
.+.+|+.|++..|.+.. +|++ +..+ .|..||++.|+++ .+ |..|.+|+.|++|-|.+|.++.
T Consensus 187 ~l~slr~l~vrRn~l~~-lp~E-l~~L-pLi~lDfScNkis-~i-Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLED-LPEE-LCSL-PLIRLDFSCNKIS-YL-PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhhhhh-CCHH-HhCC-ceeeeecccCcee-ec-chhhhhhhhheeeeeccCCCCC
Confidence 77788888888887777 5665 6544 4778888888887 56 7888888888888888888874
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8e-13 Score=111.68 Aligned_cols=178 Identities=20% Similarity=0.226 Sum_probs=121.0
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-cccccCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~ 152 (263)
..|+.+||+.|-+.. |.........+++|+.|+++.|.+.-...... -..+++|+.|.|+.|.++. .+...+.
T Consensus 146 ~~v~~LdLS~NL~~n---w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHN---WFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred CcceeecchhhhHHh---HHHHHHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 468888888886643 33334556788899999999998865443321 2357788888999988873 2233445
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhh-----hh
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQS-----IA 227 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----l~ 227 (263)
.+|+|+.|+++.|....... .....+..|+.|||++|++....-....+.++.|+.|.++.+.+.....|+. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 77889999998885322211 1345567899999999998764211237888999999999998865443443 45
Q ss_pred cCCCCCEEEecCcccccccCc-cchhcHHHHHH
Q 024731 228 SFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM 259 (263)
Q Consensus 228 ~l~~L~~L~l~~n~l~~~~p~-~~l~~L~~L~~ 259 (263)
.+++|++|+++.|++. ..++ ..+..+.+|..
T Consensus 299 ~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR-DWRSLNHLRTLENLKH 330 (505)
T ss_pred ccccceeeecccCccc-cccccchhhccchhhh
Confidence 6889999999999997 4565 33444444333
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=3e-10 Score=105.75 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=27.9
Q ss_pred ccCCCcHHHHHHHHHHhhhCCCCCC---CCCCCcCCCCCCCCCCCCc
Q 024731 23 WSEGCLEQERYALLQLRHFFNDDQC---LQNCWVDDENYSDCCQWER 66 (263)
Q Consensus 23 ~~~~~~~~~~~aL~~~~~~~~~~~~---~~~~W~~~~~~~~~c~w~g 66 (263)
..+...+.|...++.+...+.-|+. ....|. ...++|.-..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~ 99 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSE 99 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCC
Confidence 4567788999999999998883321 233487 4667886543
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=5.2e-13 Score=108.19 Aligned_cols=134 Identities=27% Similarity=0.322 Sum_probs=107.8
Q ss_pred CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (263)
Q Consensus 102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 181 (263)
...|+++|+++|.|+..... ..-.|.++.|++|+|.+. .+ ..+..+++|+.|||++|.++.. .. .-..+.+
T Consensus 283 Wq~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~-~G-wh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-----VKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC-VG-WHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhhhhhh-----hhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh-hh-hHhhhcC
Confidence 45789999999999754433 677899999999999997 33 3478899999999999998743 22 4457889
Q ss_pred CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++.|.|+.|.+... .+ ++++-+|..||+++|+|........++++|.|+++.+.+|++.+ +|+
T Consensus 354 IKtL~La~N~iE~L--SG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd 416 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD 416 (490)
T ss_pred EeeeehhhhhHhhh--hh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence 99999999998763 44 88899999999999999754334678999999999999999984 554
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=5e-13 Score=121.90 Aligned_cols=146 Identities=26% Similarity=0.333 Sum_probs=106.4
Q ss_pred CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (263)
Q Consensus 102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 181 (263)
++.|+.|++.+|.++...-+ .+.++++|+.|+|++|.+.......+.+++.|+.|+|++|.++ .+|. .+..++.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~ 431 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGR 431 (1081)
T ss_pred hHHHHHHHHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhh
Confidence 45677778888888754433 2788888999999999887433346778888899999999887 6776 8888888
Q ss_pred CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
|++|...+|.+.. .| . +.+++.|+.+|++.|.++...++.... .++|++||+++|.-. ..-...|+.++++.
T Consensus 432 L~tL~ahsN~l~~-fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLS-FP-E-LAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRL-VFDHKTLKVLKSLS 503 (1081)
T ss_pred hHHHhhcCCceee-ch-h-hhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCccc-ccchhhhHHhhhhh
Confidence 9998888888876 55 4 888999999999999987554343332 378999999999732 22223455444443
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.22 E-value=4.9e-13 Score=122.01 Aligned_cols=141 Identities=28% Similarity=0.338 Sum_probs=113.4
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccc---------------------cccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGL---------------------DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 157 (263)
..+++.|++|+|..|.+...++.... ..=..++.|+.|++.+|.+++..-..+.++.+|
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 44566777777777766543321100 001235678899999999998887888999999
Q ss_pred CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237 (263)
Q Consensus 158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 237 (263)
++|+|++|++. .+|+..+.++..|++|+|++|+++. +|.. +.+++.|++|....|++. .. | .+.++++|+.+|+
T Consensus 386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~-Lp~t-va~~~~L~tL~ahsN~l~-~f-P-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT-LPDT-VANLGRLHTLRAHSNQLL-SF-P-ELAQLPQLKVLDL 459 (1081)
T ss_pred eeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh-hhHH-HHhhhhhHHHhhcCCcee-ec-h-hhhhcCcceEEec
Confidence 99999999986 6888789999999999999999998 7765 999999999999999997 34 6 8999999999999
Q ss_pred cCcccccc
Q 024731 238 GFCTLTGA 245 (263)
Q Consensus 238 ~~n~l~~~ 245 (263)
+.|+++..
T Consensus 460 S~N~L~~~ 467 (1081)
T KOG0618|consen 460 SCNNLSEV 467 (1081)
T ss_pred ccchhhhh
Confidence 99998743
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=1.3e-10 Score=114.09 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=99.9
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 180 (263)
...+|+.|++++|.+...... +..+++|++|+|+++.....+| .++.+++|++|++++|.....+|. .+..++
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~ 681 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLN 681 (1153)
T ss_pred CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccC
Confidence 356788888888877654332 5678888888888776544666 377788888888888876667776 788888
Q ss_pred CCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc-cchhcHH
Q 024731 181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVS 255 (263)
Q Consensus 181 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~l~~L~ 255 (263)
+|+.|++++|.....+|.. + ++++|+.|++++|...... |.. .++|++|++++|.+. .+|. ..+.+|+
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~-p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~ 750 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSF-PDI---STNISWLDLDETAIE-EFPSNLRLENLD 750 (1153)
T ss_pred CCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccc-ccc---cCCcCeeecCCCccc-cccccccccccc
Confidence 8888888887655546654 3 6788888888888655444 432 457888888888886 5665 2344444
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=7.9e-11 Score=109.27 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=49.5
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
+++.|++++|.++..+. ..++|++|++++|+++.. |. + .++|++|++++|.++ .+|...
T Consensus 223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsL-P~-----l--p~sL~~L~Ls~N~L~-~Lp~lp--- 281 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL-PV-----L--PPGLLELSIFSNPLT-HLPALP--- 281 (788)
T ss_pred CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcc-cC-----c--ccccceeeccCCchh-hhhhch---
Confidence 46667777776643221 236777777777777654 22 1 245556666666555 233211
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN 194 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 194 (263)
.+|+.|++++|+++ .+|. ..++|++|++++|++++
T Consensus 282 ~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 282 SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS 316 (788)
T ss_pred hhcCEEECcCCccc-cccc----cccccceeECCCCcccc
Confidence 34445555555544 2332 12455555555555554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=9.2e-13 Score=114.67 Aligned_cols=165 Identities=25% Similarity=0.301 Sum_probs=136.3
Q ss_pred EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCC
Q 024731 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (263)
Q Consensus 76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 155 (263)
.+..|++.|++.+. +..+..|..|+.+.+..|.+....+. ++++..|+++||+.|+++ .+|..++.++
T Consensus 77 t~~aDlsrNR~~el------p~~~~~f~~Le~liLy~n~~r~ip~~-----i~~L~~lt~l~ls~NqlS-~lp~~lC~lp 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSEL------PEEACAFVSLESLILYHNCIRTIPEA-----ICNLEALTFLDLSSNQLS-HLPDGLCDLP 144 (722)
T ss_pred hhhhhccccccccC------chHHHHHHHHHHHHHHhccceecchh-----hhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence 34567777776432 33456677888999999988755443 789999999999999998 7888888776
Q ss_pred CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEE
Q 024731 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 235 (263)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 235 (263)
|+.|.+++|+++ .+|. .++....|..||.+.|.+.. +|.. ++.+.+|+.|.+..|++. .. |+.+..++ |..|
T Consensus 145 -Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~s-lpsq-l~~l~slr~l~vrRn~l~-~l-p~El~~Lp-Li~l 216 (722)
T KOG0532|consen 145 -LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQS-LPSQ-LGYLTSLRDLNVRRNHLE-DL-PEELCSLP-LIRL 216 (722)
T ss_pred -ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhhh-chHH-hhhHHHHHHHHHhhhhhh-hC-CHHHhCCc-eeee
Confidence 899999999987 6787 88888999999999999988 6665 999999999999999987 34 78888664 8999
Q ss_pred EecCcccccccCccchhcHHHHHHHhc
Q 024731 236 SMGFCTLTGALHGQGKLRVSEAFMILI 262 (263)
Q Consensus 236 ~l~~n~l~~~~p~~~l~~L~~L~~~~~ 262 (263)
|++.|+++ .||. .|.++++|+.+.+
T Consensus 217 DfScNkis-~iPv-~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 217 DFSCNKIS-YLPV-DFRKMRHLQVLQL 241 (722)
T ss_pred ecccCcee-ecch-hhhhhhhheeeee
Confidence 99999998 7898 8999999988754
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=3.5e-12 Score=106.67 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=66.1
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCC-CcCCCCcCccccCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLGNL 182 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L 182 (263)
....++|..|+|+..++.. |+.+++|+.||||+|+|+.+-|..|.++.+|..|.+.+ |+++ .+|...|.++.++
T Consensus 68 ~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 5678999999999877754 99999999999999999988899999999998888776 7765 5666566655555
Q ss_pred CEEEcCCCCC
Q 024731 183 EELDMSDNAI 192 (263)
Q Consensus 183 ~~L~L~~n~l 192 (263)
+.|.+.-|.+
T Consensus 143 qrLllNan~i 152 (498)
T KOG4237|consen 143 QRLLLNANHI 152 (498)
T ss_pred HHHhcChhhh
Confidence 5555444444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=5.7e-12 Score=102.26 Aligned_cols=131 Identities=27% Similarity=0.277 Sum_probs=105.3
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.+|+++|.+.... ....-.+.++.|++++|.+..... +..+++|++||||+|.++ .+..+-.+
T Consensus 284 q~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls-~~~Gwh~K 350 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID------ESVKLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLA-ECVGWHLK 350 (490)
T ss_pred hhhhhccccccchhhhh------hhhhhccceeEEeccccceeeehh------hhhcccceEeecccchhH-hhhhhHhh
Confidence 45789999999886432 234567899999999999975432 788999999999999998 44444457
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
+.+.+.|.|++|.+.. +. .+..+-+|.+||+++|+|........++++|.|+++.+.+|.+.+.
T Consensus 351 LGNIKtL~La~N~iE~-LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIET-LS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcCEeeeehhhhhHhh-hh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8889999999999863 33 7788999999999999997643333489999999999999999754
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.8e-10 Score=73.09 Aligned_cols=61 Identities=31% Similarity=0.540 Sum_probs=37.7
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 242 (263)
++|++|++++|+++. +++..|..+++|++|++++|.++... +..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence 356666666666665 44444666666666666666666433 55666666666666666654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=2e-10 Score=100.59 Aligned_cols=155 Identities=30% Similarity=0.419 Sum_probs=95.8
Q ss_pred cEEEEecCCCCCccccccccccccccCCc-CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.++.+++.++.+..... ....+. +|+.|++++|.+...... +..+++|+.|++++|+++ .+|...+.
T Consensus 117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~~l~~~-----~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIESLPSP-----LRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCCcccccCcc------ccccchhhcccccccccchhhhhhh-----hhccccccccccCCchhh-hhhhhhhh
Confidence 46778888877754322 233443 777777777777654322 566777777777777776 45554446
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCC-----------------------CCCCCCchhhhcCCCCCcEE
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-----------------------AINNLVIPKELHNFTNLEEL 210 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n-----------------------~l~~~~~~~~l~~l~~L~~L 210 (263)
.+.|+.|++++|.+. .+|. .......|+++.+++| ++.. .+. .++.++.++.|
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~L 260 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE-SIGNLSNLETL 260 (394)
T ss_pred hhhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc-hhcccccccee
Confidence 667777777777765 3443 2223334555555555 3332 122 25666777888
Q ss_pred EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++++|.++.. +. ++.+.+++.|++++|.+...+|.
T Consensus 261 ~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 261 DLSNNQISSI--SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccccc--cc-ccccCccCEEeccCccccccchh
Confidence 8888877632 22 77778888888888887765554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=3.2e-10 Score=71.98 Aligned_cols=58 Identities=34% Similarity=0.424 Sum_probs=23.6
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCC
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n 190 (263)
+|++|++++|+++...+..|.++++|++|++++|.+.. ++...|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCC
Confidence 34444444444443222344444444444444444432 22223444444444444444
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=2.1e-10 Score=100.34 Aligned_cols=123 Identities=37% Similarity=0.409 Sum_probs=93.1
Q ss_pred EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCC-CCCEEEccCCcCCccccccCCCCCC
Q 024731 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN-NLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
.+++..+.+. .+...+..++.++.|++.+|.++...+. ..... +|+.|++++|.+. .+|..++.++.
T Consensus 97 ~l~~~~~~~~------~~~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLR------SNISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIE-SLPSPLRNLPN 164 (394)
T ss_pred eeeccccccc------cCchhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchh-hhhhhhhcccc
Confidence 3666666542 1122345668899999999999877664 44553 8999999999998 66678899999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCC
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 216 (263)
|+.|++++|++. .+|. .....++|+.|++++|++.. +|.. ......|+.+.+++|.
T Consensus 165 L~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~N~i~~-l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 165 LKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKISD-LPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred ccccccCCchhh-hhhh-hhhhhhhhhheeccCCcccc-Cchh-hhhhhhhhhhhhcCCc
Confidence 999999999988 5664 45588999999999999988 5553 3444557777777763
No 36
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.88 E-value=3.4e-09 Score=61.96 Aligned_cols=40 Identities=35% Similarity=0.723 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhCC-CCCCCCCCCcCCCC-CCCCCCCCceEEc
Q 024731 29 EQERYALLQLRHFFN-DDQCLQNCWVDDEN-YSDCCQWERVECN 70 (263)
Q Consensus 29 ~~~~~aL~~~~~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~ 70 (263)
++|++||++||+++. ++...+.+|+ .. ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 689999999999999 5667899999 22 2799999999995
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=9.6e-10 Score=90.86 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=17.7
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcC
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF 143 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 143 (263)
++|++|+||+|-+....+......+..+..|++|.|.+|.+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 34555555555444333322222334444444444444444
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.9e-10 Score=94.17 Aligned_cols=165 Identities=22% Similarity=0.252 Sum_probs=118.8
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
-.+++.|+++.|++.-.. ....-..+++|+.|.++.|+++. ......+..+|+|+.|+|++|..-..-.....
T Consensus 171 Lp~Le~LNls~Nrl~~~~----~s~~~~~l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~ 243 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFI----SSNTTLLLSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATSTK 243 (505)
T ss_pred cccchhcccccccccCCc----cccchhhhhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence 467899999999885211 12223467899999999999972 22223467899999999999963222222344
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchh-----hhcCCCCCcEEEcCCCCCCcccchhhhh
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPK-----ELHNFTNLEELILDDSDLHISQLLQSIA 227 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 227 (263)
-+..|+.|||++|++...-.....+.++.|+.|+++.+.+...-.+. ....+++|++|++..|++...-....+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 57789999999999874321126778999999999999887642222 1356789999999999996543345677
Q ss_pred cCCCCCEEEecCccccc
Q 024731 228 SFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 228 ~l~~L~~L~l~~n~l~~ 244 (263)
.+++|+.|.+..|.++.
T Consensus 324 ~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLNK 340 (505)
T ss_pred ccchhhhhhcccccccc
Confidence 78888999988998874
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=1.7e-09 Score=89.50 Aligned_cols=167 Identities=22% Similarity=0.220 Sum_probs=83.5
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccC-------------------------------------
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIA------------------------------------- 116 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------- 116 (263)
++++.+|||+|.++..|...+ ...+.+...|+.|.|.+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 378888888888754332111 123444556666666666553
Q ss_pred CCCCcccccccCCCCCCCEEEccCCcCCc----cccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcC
Q 024731 117 GCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMS 188 (263)
Q Consensus 117 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~ 188 (263)
..........|...+.|+.+.++.|.|.. .+...+..+++|++|||.+|.|+.. +. ..++.+++|+.|+++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeeccc
Confidence 22222222333444455555555554431 1122344556666666666655421 11 144455566666666
Q ss_pred CCCCCCCCchhh---h-cCCCCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCccc
Q 024731 189 DNAINNLVIPKE---L-HNFTNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 189 ~n~l~~~~~~~~---l-~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l 242 (263)
+|.+........ + ...++|+.|.+.+|.++... +...+...+.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666554322210 1 22456666666666664321 122344556666666666666
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.73 E-value=9.7e-11 Score=104.96 Aligned_cols=128 Identities=26% Similarity=0.243 Sum_probs=90.8
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
.|...+.+.|.+.-... ++.-++.|+.|||++|+++.. ..+..+++|++|||++|.+. .+|...-..+. |.
T Consensus 165 ~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-he
Confidence 45556666666653322 366678888888888888742 37778888888888888876 45542333343 88
Q ss_pred EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
.|++++|.++.. .+ +.++++|+.||+++|-+.+.--...+..+..|+.|+|.+|++-
T Consensus 236 ~L~lrnN~l~tL--~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888888888764 33 7788888888888888865432345667778888888888875
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=1e-08 Score=90.32 Aligned_cols=109 Identities=35% Similarity=0.479 Sum_probs=48.3
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+..+++++.|++.+|.+.+.... +..+++|++|++++|.|+.. ..+..++.|+.|++++|.+.. +. .+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLES 160 (414)
T ss_pred cccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCcc
Confidence 34444555555555555433221 33445555555555555432 123334445555555555442 22 3333
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 218 (263)
++.|+.+++++|.+...-+.. ...+.+++.+++.+|.+.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 455555555555554421101 234445555555555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=1.5e-08 Score=89.37 Aligned_cols=128 Identities=29% Similarity=0.359 Sum_probs=60.9
Q ss_pred CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (263)
Q Consensus 102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 181 (263)
+..++.+.+..|.+..... .+..+.+|+.|++.+|++.. +...+..+++|++|++++|.++.. . .+..++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~--~l~~l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-E--GLSTLTL 141 (414)
T ss_pred hHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-c--chhhccc
Confidence 3444444455555543111 14445555555555555552 222244555555555555555432 2 3344444
Q ss_pred CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch-hhhhcCCCCCEEEecCcccc
Q 024731 182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL-QSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~ 243 (263)
|+.|++++|.++.. .. +..++.|+.+++++|++.... + . ...+.+++.+++.+|.+.
T Consensus 142 L~~L~l~~N~i~~~--~~-~~~l~~L~~l~l~~n~i~~ie-~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SG-LESLKSLKLLDLSYNRIVDIE-NDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhheeccCcchhc--cC-CccchhhhcccCCcchhhhhh-hhh-hhhccchHHHhccCCchh
Confidence 55555555555542 11 444555555555555554221 1 1 344555555555555544
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=5.3e-08 Score=92.37 Aligned_cols=128 Identities=26% Similarity=0.299 Sum_probs=82.1
Q ss_pred cCCcEEEccCcc--cCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731 103 QQLESLYLIGNN--IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (263)
Q Consensus 103 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 180 (263)
++|++|-+..|. +.. ++. ..|..++.|++|||++|.-.+.+|..++++-+|++|++++..+. .+|. .+.++.
T Consensus 545 ~~L~tLll~~n~~~l~~-is~---~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLE-ISG---EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLK 618 (889)
T ss_pred CccceEEEeecchhhhh-cCH---HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHH
Confidence 367777777775 222 222 23677888888888877666677888888888888888888766 5776 778888
Q ss_pred CCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc-cchhhhhcCCCCCEEEe
Q 024731 181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS-QLLQSIASFTSLKYLSM 237 (263)
Q Consensus 181 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~l~~L~~L~l 237 (263)
.|.+|++..+.....++.. ...+.+|++|.+........ .....+..+..|+.+..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888888877655544332 55577888887766542211 11234444555555544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=4.2e-09 Score=94.74 Aligned_cols=106 Identities=28% Similarity=0.359 Sum_probs=85.7
Q ss_pred CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEE
Q 024731 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210 (263)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 210 (263)
-.|...+.++|.+. ....++.-++.|+.|+|++|+++.. . .+..++.|++|||++|.+.. +|.-....+ +|+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H--HHHhcccccccccccchhcc-ccccchhhh-hheee
Confidence 36778888899887 5666777889999999999998743 2 67889999999999999987 554323333 49999
Q ss_pred EcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
.+++|.++. .-.+.++++|+.||+++|-+.+.
T Consensus 238 ~lrnN~l~t---L~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 238 NLRNNALTT---LRGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred eecccHHHh---hhhHHhhhhhhccchhHhhhhcc
Confidence 999999873 35688999999999999998753
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=3.6e-08 Score=80.29 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=110.6
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-cccccCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~ 152 (263)
.+|.++||.+|.+.. |.-....+.+++.|+.|+++.|++...+... -....+|++|-|.+..+.- .....+.
T Consensus 71 ~~v~elDL~~N~iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhcc---HHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence 468888999888743 3333556788999999999999887665542 1356688888888777652 2233455
Q ss_pred CCCCCCEEEcCCCcCCCC---------cC-c------------------cccCCCCCCCEEEcCCCCCCCCCchhhhcCC
Q 024731 153 GLSSLRNLSLIGNRLIGS---------ID-I------------------KGLDSLGNLEELDMSDNAINNLVIPKELHNF 204 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~---------~p-~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 204 (263)
.+|.++.|.++.|.+... +. . ..-..++++..+-+..|.+...........+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 677777777777733100 00 0 0001256666777777766554333335567
Q ss_pred CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccccc
Q 024731 205 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246 (263)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 246 (263)
+.+..|.|+.|++......+++.++++|..|.+++|++..++
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 778888899998876543577888999999999999887554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=1.8e-07 Score=88.88 Aligned_cols=104 Identities=26% Similarity=0.260 Sum_probs=48.1
Q ss_pred CCCEEEccCCc--CCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcE
Q 024731 132 NLKFLYLDYNH--FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209 (263)
Q Consensus 132 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 209 (263)
+|+.|-+..|. +.......|..++.|++||+++|.-.+.+|. .++.+-+|++|++++..+.. +|.. ++++++|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~-LP~~-l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISH-LPSG-LGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccc-cchH-HHHHHhhhe
Confidence 45555554443 2212222344455555555555444444454 45555555555555555543 4444 555555555
Q ss_pred EEcCCCCCCcccchhhhhcCCCCCEEEecC
Q 024731 210 LILDDSDLHISQLLQSIASFTSLKYLSMGF 239 (263)
Q Consensus 210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~ 239 (263)
|++..+.....+ +.....+.+|++|.+..
T Consensus 623 Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESI-PGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccc-cchhhhcccccEEEeec
Confidence 555544433222 33344455555555443
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=1.8e-08 Score=72.99 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=67.4
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC-CCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 182 (263)
.+..++|+.+.+--. +.. ...+.....|+..+|++|.+. ..|+.| ..++.++.+++++|.++ .+|. .+..++.|
T Consensus 28 E~h~ldLssc~lm~i-~da-vy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYI-ADA-VYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHH-HHH-HHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHh
Confidence 455667777765321 111 011445566677777777777 344444 34557777777777766 5676 57777777
Q ss_pred CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218 (263)
Q Consensus 183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 218 (263)
+.|+++.|.+.. .|.. +..+.++..|+..+|.+.
T Consensus 103 r~lNl~~N~l~~-~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 103 RSLNLRFNPLNA-EPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhcccccCcccc-chHH-HHHHHhHHHhcCCCCccc
Confidence 777777777766 3443 555777777777777665
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=1.6e-07 Score=75.65 Aligned_cols=144 Identities=23% Similarity=0.226 Sum_probs=82.3
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc----cc---------ccCCCCCCCCEEEcCCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IF---------SSLGGLSSLRNLSLIGN 165 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p---------~~l~~l~~L~~L~L~~n 165 (263)
+.++++|+.++||.|.+....|+...+.++.-..|.+|.+++|.+... +. ....+-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 456777888888888777666665556667777788888877776511 11 11234466777777777
Q ss_pred cCCCCcCc----cccCCCCCCCEEEcCCCCCCCCCchh----hhcCCCCCcEEEcCCCCCCccc---chhhhhcCCCCCE
Q 024731 166 RLIGSIDI----KGLDSLGNLEELDMSDNAINNLVIPK----ELHNFTNLEELILDDSDLHISQ---LLQSIASFTSLKY 234 (263)
Q Consensus 166 ~l~~~~p~----~~~~~l~~L~~L~L~~n~l~~~~~~~----~l~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~ 234 (263)
++.. .+. ..+..-.+|+.+.+..|.|....... .+..+.+|+.||+.+|-++... +...+..++.|+.
T Consensus 168 Rlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 7642 121 12233346666667666664321110 1334566777777777665321 1233445555666
Q ss_pred EEecCcccc
Q 024731 235 LSMGFCTLT 243 (263)
Q Consensus 235 L~l~~n~l~ 243 (263)
|.+.+|-++
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 666666554
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.38 E-value=7.4e-07 Score=68.80 Aligned_cols=109 Identities=22% Similarity=0.207 Sum_probs=78.2
Q ss_pred CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (263)
Q Consensus 102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 181 (263)
..+...+||++|.+....- |..+++|++|.+++|.|+..-|.--..+++|+.|.+.+|++...-....+..++.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 3456778899888864322 7888899999999999986555544556789999999998753222235678889
Q ss_pred CCEEEcCCCCCCCCCc--hhhhcCCCCCcEEEcCCCC
Q 024731 182 LEELDMSDNAINNLVI--PKELHNFTNLEELILDDSD 216 (263)
Q Consensus 182 L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~l~~n~ 216 (263)
|++|.+-+|.++..-- .-.+..+++|+.||+..=.
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998888765311 1135678899999987643
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=1.1e-08 Score=74.07 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=75.9
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+....+|+..++++|.+...++.. -..++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|. .+..
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~ 121 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAP 121 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHH
Confidence 445566777788888887655542 345667888888888888 67777888888888888888876 4555 5666
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 221 (263)
+.++..|+..+|.+.. ++.. +-.-+..-..++.++.+.+..
T Consensus 122 L~~l~~Lds~~na~~e-id~d-l~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAE-IDVD-LFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred HHhHHHhcCCCCcccc-CcHH-HhccccHHHHHhcCCcccccC
Confidence 8888888888887765 4443 221122222334555555443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=1.3e-06 Score=51.14 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731 205 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
++|++|++++|+++ .+ +..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SH-GGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-cc-CchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 33 445666666666666666666
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.26 E-value=4.4e-07 Score=84.15 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=92.3
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-cccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 181 (263)
.+|+.|++++...-..... ...-..+|.|+.|.+++-.+.. ..-....++++|..||+++.+++. + .+++.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhcccc
Confidence 4678888877544321111 0123457888888888877753 233445678888999999888763 3 27888888
Q ss_pred CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc-ch----hhhhcCCCCCEEEecCcccccccCc
Q 024731 182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ-LL----QSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~----~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
|+.|.+.+=.+.....-..+.++++|++||+|..+..... .. +.-..+|+|+.||.|++.+++.+-+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 8888887766654211122778889999999887654321 01 1223578899999998888766544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=1.4e-06 Score=51.02 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=17.7
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI 168 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 168 (263)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555544
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.1e-08 Score=80.00 Aligned_cols=138 Identities=24% Similarity=0.249 Sum_probs=62.6
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCc-cccccCCCCCCCCEEEcCCCcCCCCcCcccc
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 176 (263)
+..+.+|+.|.+.++++.+.+.. .+....+|+.|+++.+. |+. ...-.+.+++.|..|++++|.+....-...+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 34455555555555555543332 24555556666665542 221 0111234455555555555554322100000
Q ss_pred CC-CCCCCEEEcCCCCC--CCCCchhhhcCCCCCcEEEcCCCC-CCcccchhhhhcCCCCCEEEecCcc
Q 024731 177 DS-LGNLEELDMSDNAI--NNLVIPKELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFCT 241 (263)
Q Consensus 177 ~~-l~~L~~L~L~~n~l--~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~ 241 (263)
.. -++|+.|+++++.- ..........++++|.+|||++|. ++... ...+.+++.|++|.++.|.
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhc
Confidence 00 12344444443321 010111123456677777776654 33322 4556666667777666665
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=4.9e-06 Score=64.33 Aligned_cols=108 Identities=24% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcE
Q 024731 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209 (263)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 209 (263)
..+...+||++|.+.. ...|..++.|.+|.+++|+++..-|. .-.-+++|+.|.|.+|.+.....-.-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4467789999999863 34678889999999999999855443 44556789999999998865322222778899999
Q ss_pred EEcCCCCCCcccc--hhhhhcCCCCCEEEecCc
Q 024731 210 LILDDSDLHISQL--LQSIASFTSLKYLSMGFC 240 (263)
Q Consensus 210 L~l~~n~l~~~~~--~~~l~~l~~L~~L~l~~n 240 (263)
|.+-+|+++...- --.+..+++|++||++.=
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999999874320 123567899999998754
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.5e-06 Score=71.06 Aligned_cols=141 Identities=28% Similarity=0.316 Sum_probs=94.9
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 180 (263)
..+.++.+||.+|.|+.. .+++..+.++|.|++|+++.|++...+-..=....+|++|.|.+..+.+.-....+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 467899999999999753 233345789999999999999998433221145678999999999887654444667788
Q ss_pred CCCEEEcCCCCCCCCC---------chh-------------------hhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 181 NLEELDMSDNAINNLV---------IPK-------------------ELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 181 ~L~~L~L~~n~l~~~~---------~~~-------------------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
.++.|+++.|.+.-.. .+. .-..++++..+-+..|.+....--+....++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 8888888888432110 000 012245666666666766543323445567777
Q ss_pred CEEEecCcccc
Q 024731 233 KYLSMGFCTLT 243 (263)
Q Consensus 233 ~~L~l~~n~l~ 243 (263)
.-|+|+.|++.
T Consensus 227 ~~LnL~~~~id 237 (418)
T KOG2982|consen 227 SCLNLGANNID 237 (418)
T ss_pred hhhhhcccccc
Confidence 77888888875
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=8.9e-06 Score=75.61 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=105.3
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..+..+|++|...- ...|. ...-.-+|.|+.|.+.+-.+... +......++|+|..||+|+.+++.. ..++.
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~--~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWP--KKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccchh-hccHH--HHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 35677788776542 11121 12234689999999998777532 1223467899999999999999843 67889
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCC--chh---hhcCCCCCcEEEcCCCCCCcccchhhhhc
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPK---ELHNFTNLEELILDDSDLHISQLLQSIAS 228 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 228 (263)
+++|+.|.+.+=.+.....-..+.++++|+.||+|........ ... .-..+|+|+.||.+++.+....+...+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 9999999888766653222226778999999999988765421 111 12458999999999999887663344445
Q ss_pred CCCCCEEE
Q 024731 229 FTSLKYLS 236 (263)
Q Consensus 229 l~~L~~L~ 236 (263)
-++|+.+-
T Consensus 274 H~~L~~i~ 281 (699)
T KOG3665|consen 274 HPNLQQIA 281 (699)
T ss_pred CccHhhhh
Confidence 55555544
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.2e-07 Score=75.79 Aligned_cols=136 Identities=21% Similarity=0.159 Sum_probs=96.4
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCc-CCCCcCccccCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSLGNL 182 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L 182 (263)
.|+.|||++..++...-. ..++.+.+|+.|.+.++++.+.+...+.+-..|+.|+++.+. ++..-....+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 588999998888643221 236788899999999999998888889999999999998875 3221111245788999
Q ss_pred CEEEcCCCCCCCCCchhhhcC-CCCCcEEEcCCCCC--CcccchhhhhcCCCCCEEEecCccc
Q 024731 183 EELDMSDNAINNLVIPKELHN-FTNLEELILDDSDL--HISQLLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 183 ~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~l~~n~l--~~~~~~~~l~~l~~L~~L~l~~n~l 242 (263)
..|+++.|.+....-...+.. -++|+.|+++++.- ....+..-...+++|.+|||++|..
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999999998766432222222 25788899988652 1112133456799999999999753
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.77 E-value=1.6e-05 Score=63.89 Aligned_cols=66 Identities=27% Similarity=0.393 Sum_probs=30.2
Q ss_pred cCCCCCCCEEEccCC--cCCccccccCCCCCCCCEEEcCCCcCCC--CcCccccCCCCCCCEEEcCCCCCCC
Q 024731 127 LSRLNNLKFLYLDYN--HFNNSIFSSLGGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDMSDNAINN 194 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~ 194 (263)
+..+++|++|.++.| .+.+.++.....+++|+++++++|++.. .++ .+..+.+|..|++.+|..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchhhhhcccCCccc
Confidence 444555555555555 3333333333334555555555555431 111 23344445555555554433
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=6e-05 Score=61.16 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=114.8
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcc-------cccccCCCCCCCEEEccCCcCCc
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE-------GLDTLSRLNNLKFLYLDYNHFNN 145 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~l~~L~~L~Ls~n~l~~ 145 (263)
...+++++||+|.++....-.+ ...+++-.+|+..+++.-.. |....+ ..+.+..+|+|+..+||.|.|..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3468999999999864332222 22356778888888887543 322221 13446789999999999999987
Q ss_pred ccccc----CCCCCCCCEEEcCCCcCCCCcCc-------------cccCCCCCCCEEEcCCCCCCCCCchhh----hcCC
Q 024731 146 SIFSS----LGGLSSLRNLSLIGNRLIGSIDI-------------KGLDSLGNLEELDMSDNAINNLVIPKE----LHNF 204 (263)
Q Consensus 146 ~~p~~----l~~l~~L~~L~L~~n~l~~~~p~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~----l~~l 204 (263)
..|+. ++.-+.|++|.+++|.+. .+.- ....+-|.|+.+....|++.. .+... +..-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh 184 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH 184 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence 66654 456789999999999864 2221 122346789999999999865 33321 2333
Q ss_pred CCCcEEEcCCCCCCccc----chhhhhcCCCCCEEEecCcccc
Q 024731 205 TNLEELILDDSDLHISQ----LLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 205 ~~L~~L~l~~n~l~~~~----~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
..|+.+.+.+|.|.-.. ....+..+++|+.||+.+|.|+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 58999999999886331 0123456789999999999987
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.72 E-value=2.2e-05 Score=63.11 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCC--cCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN--RLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206 (263)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 206 (263)
.+..|+.+.+.+..++. -..+-.+++|++|.++.| +..+.++. ....+++|+++++++|++...-.-..+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34566666666666652 235667889999999999 66665655 55567999999999999874211112667788
Q ss_pred CcEEEcCCCCCCcccc--hhhhhcCCCCCEEEec
Q 024731 207 LEELILDDSDLHISQL--LQSIASFTSLKYLSMG 238 (263)
Q Consensus 207 L~~L~l~~n~l~~~~~--~~~l~~l~~L~~L~l~ 238 (263)
|..|++.+|..+.... -..+.-+++|++||-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 8899999987764321 2346667888777643
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=1.6e-06 Score=70.21 Aligned_cols=103 Identities=25% Similarity=0.221 Sum_probs=72.3
Q ss_pred CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE 208 (263)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 208 (263)
.+.+.+.|+.-++.++++ ....+|+.|++|.|+-|.++. +. .+..+++|++|+|..|.|....--..+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-ch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 456677788888887742 234578888888888888773 33 4677888888888888887743334467888888
Q ss_pred EEEcCCCCCCcccc----hhhhhcCCCCCEEE
Q 024731 209 ELILDDSDLHISQL----LQSIASFTSLKYLS 236 (263)
Q Consensus 209 ~L~l~~n~l~~~~~----~~~l~~l~~L~~L~ 236 (263)
.|+|..|.-.|... ...+..+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888887655431 12355677777776
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00023 Score=61.82 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=40.6
Q ss_pred cEEEEecCCCCCccccccccccccccCC-cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC-cCCccccccCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPF-QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNNSIFSSLG 152 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~ 152 (263)
..+.|+++++.+...+ .+ .+|++|+++++.--...|.. + .++|++|++++| .+. .+|.
T Consensus 53 ~l~~L~Is~c~L~sLP----------~LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 53 ASGRLYIKDCDIESLP----------VLPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred CCCEEEeCCCCCcccC----------CCCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccc-cccc---
Confidence 3557888877664321 12 25888888775443334431 2 357888888887 443 4443
Q ss_pred CCCCCCEEEcCCCc
Q 024731 153 GLSSLRNLSLIGNR 166 (263)
Q Consensus 153 ~l~~L~~L~L~~n~ 166 (263)
+|+.|+++.+.
T Consensus 113 ---sLe~L~L~~n~ 123 (426)
T PRK15386 113 ---SVRSLEIKGSA 123 (426)
T ss_pred ---ccceEEeCCCC
Confidence 46666666554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.55 E-value=0.00034 Score=50.93 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=13.3
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 163 (263)
|..+++|+.+.+..+ +.......|..+++++.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccccc-ccccceeeeeccccccccccc
Confidence 444444555555443 332222334444444444443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=3.3e-06 Score=68.47 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 180 (263)
.+.+.+.|+..++.+++.. ....++.|++|.||-|+|+.. ..+..+++|++|+|..|.+...-....+.+++
T Consensus 17 dl~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 3567778888888876432 256788888899998888743 34677888888888888876432223567888
Q ss_pred CCCEEEcCCCCCCCCCchh----hhcCCCCCcEEE
Q 024731 181 NLEELDMSDNAINNLVIPK----ELHNFTNLEELI 211 (263)
Q Consensus 181 ~L~~L~L~~n~l~~~~~~~----~l~~l~~L~~L~ 211 (263)
+|+.|.|..|.-.+..+.. .+.-+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888888766654332 356677777664
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00076 Score=49.02 Aligned_cols=122 Identities=15% Similarity=0.220 Sum_probs=68.3
Q ss_pred ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731 126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205 (263)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 205 (263)
.|.+..+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++...+..+++++.+.+.. .+.. ++...+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKS-IGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-E-E-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccc-cccccccccc
Confidence 377788899999875 566455567888989999999886 44 45665888888999999976 4433 3344588899
Q ss_pred CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
+|+.+++..+ +.... ...+.+. +++.+.+.. .++ .++...|.+..+|
T Consensus 82 ~l~~i~~~~~-~~~i~-~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIG-SSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEH-TTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccCcc-ccEEc-hhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 9999999876 54333 5667787 899999876 343 4566566665544
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.13 E-value=0.0011 Score=57.65 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=75.7
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+..+.+++.|++++|.++.. |. + .++|++|+++++.--..+|..+ .++|++|++++|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~-----L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~----- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV-----L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE----- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC-----C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----
Confidence 44568999999999987654 22 2 3469999999854434666654 25899999999843334554
Q ss_pred CCCCCEEEcCCCCCC--CCCchhhhcCC------------------CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEec
Q 024731 179 LGNLEELDMSDNAIN--NLVIPKELHNF------------------TNLEELILDDSDLHISQLLQSIASFTSLKYLSMG 238 (263)
Q Consensus 179 l~~L~~L~L~~n~l~--~~~~~~~l~~l------------------~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~ 238 (263)
+|+.|++..+... +.+|.. +..+ ++|++|++++|... .. |+.+. .+|+.|+++
T Consensus 113 --sLe~L~L~~n~~~~L~~LPss-Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~L-P~~LP--~SLk~L~ls 185 (426)
T PRK15386 113 --SVRSLEIKGSATDSIKNVPNG-LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-IL-PEKLP--ESLQSITLH 185 (426)
T ss_pred --ccceEEeCCCCCcccccCcch-HhheeccccccccccccccccCCcccEEEecCCCcc-cC-ccccc--ccCcEEEec
Confidence 4666666655431 123332 2222 36778888777654 22 33333 478888887
Q ss_pred Cc
Q 024731 239 FC 240 (263)
Q Consensus 239 ~n 240 (263)
.|
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 66
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.64 E-value=0.00098 Score=32.53 Aligned_cols=19 Identities=42% Similarity=0.504 Sum_probs=10.6
Q ss_pred CCEEEccCCcCCccccccCC
Q 024731 133 LKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 133 L~~L~Ls~n~l~~~~p~~l~ 152 (263)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666665 4555444
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.50 E-value=0.0014 Score=31.93 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=14.0
Q ss_pred CCCEEEecCcccccccCccchhc
Q 024731 231 SLKYLSMGFCTLTGALHGQGKLR 253 (263)
Q Consensus 231 ~L~~L~l~~n~l~~~~p~~~l~~ 253 (263)
+|++||+++|+++ .+|+ .+.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~-~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS-SFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGT-TTTT
T ss_pred CccEEECCCCcCE-eCCh-hhcC
Confidence 4677777777777 6776 3544
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.35 E-value=2.7e-05 Score=69.43 Aligned_cols=91 Identities=22% Similarity=0.139 Sum_probs=40.2
Q ss_pred EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCcc----cccc
Q 024731 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNS----IFSS 150 (263)
Q Consensus 76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~p~~ 150 (263)
...+.+.+|.+...+.. .-...+...+.|+.|++++|.+.+.......+.+... ..+++|++..|.+++. +...
T Consensus 89 l~~L~L~~~~l~~~~~~-~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAE-ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHH-HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 34455555555433221 1122344555666666666666533222222223332 3444555555554422 2233
Q ss_pred CCCCCCCCEEEcCCCcC
Q 024731 151 LGGLSSLRNLSLIGNRL 167 (263)
Q Consensus 151 l~~l~~L~~L~L~~n~l 167 (263)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 33344555555555544
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.32 E-value=0.013 Score=26.46 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=6.6
Q ss_pred CCCEEEecCcccc
Q 024731 231 SLKYLSMGFCTLT 243 (263)
Q Consensus 231 ~L~~L~l~~n~l~ 243 (263)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666665
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.22 E-value=0.00024 Score=63.51 Aligned_cols=171 Identities=24% Similarity=0.233 Sum_probs=116.5
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc----ccc
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIF 148 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p 148 (263)
...+..+++++|.+...|...+.......-+.+++|++..|.++..........+.....++.++++.|.+.. .++
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 3467789999999875554333333222236778889999988877665555567778899999999998841 223
Q ss_pred ccCC----CCCCCCEEEcCCCcCCCC----cCccccCCCCC-CCEEEcCCCCCCCCCchh---hhcCC-CCCcEEEcCCC
Q 024731 149 SSLG----GLSSLRNLSLIGNRLIGS----IDIKGLDSLGN-LEELDMSDNAINNLVIPK---ELHNF-TNLEELILDDS 215 (263)
Q Consensus 149 ~~l~----~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~-L~~L~L~~n~l~~~~~~~---~l~~l-~~L~~L~l~~n 215 (263)
..+. ...++++|.+++|.++.. +. ..+...++ +..+++..|.+.+..... .+... ..+++++++.|
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~-~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLD-EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHH-HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 3333 467899999999987632 11 13444555 667999999887542221 13444 57799999999
Q ss_pred CCCccc---chhhhhcCCCCCEEEecCccccc
Q 024731 216 DLHISQ---LLQSIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 216 ~l~~~~---~~~~l~~l~~L~~L~l~~n~l~~ 244 (263)
.++... ..+.+..+++++++.++.|.+..
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 997553 14556677889999999998874
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.17 E-value=0.013 Score=52.35 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=17.3
Q ss_pred CCCCCEEEcCCCC-CCCCCchhhhcCCCCCcEEEcCCCC
Q 024731 179 LGNLEELDMSDNA-INNLVIPKELHNFTNLEELILDDSD 216 (263)
Q Consensus 179 l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~ 216 (263)
+++|++|.+.++. ++..........++.|++|+++++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555554444 3332222223344555555555544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.56 E-value=0.011 Score=52.76 Aligned_cols=116 Identities=23% Similarity=0.171 Sum_probs=74.2
Q ss_pred CCCCCCCEEEccCCcCCcc--ccccCCCCCCCCEEEcCCC-cCCCCcC---ccccCCCCCCCEEEcCCCC-CCCCCchhh
Q 024731 128 SRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGN-RLIGSID---IKGLDSLGNLEELDMSDNA-INNLVIPKE 200 (263)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 200 (263)
...+.|+.+.+..+.-... .-......+.|+.|+++++ ......+ ......+.+|+.|+++++. ++.......
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3467888888877644322 2344556788888888763 2211111 1134456888999999888 555433331
Q ss_pred hcCCCCCcEEEcCCCC-CCcccchhhhhcCCCCCEEEecCcccc
Q 024731 201 LHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 201 l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
...+++|++|.+..+. +++..+......++.|++|+++++...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2337899999987777 665553444556888999999987653
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.58 E-value=0.0015 Score=52.06 Aligned_cols=84 Identities=17% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
..+|+.||++.|++...|. -|..++.+..|+++.|.+.-...+ +.....++.+++..|..+ ..|.+++
T Consensus 41 ~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred cceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhccchh-hCCcccc
Confidence 4578889998888754443 356677888888888887644333 667777888888888877 6788888
Q ss_pred CCCCCCEEEcCCCcCC
Q 024731 153 GLSSLRNLSLIGNRLI 168 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~ 168 (263)
..++++++++-+|.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8899998888888765
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.34 E-value=0.065 Score=27.00 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=11.5
Q ss_pred CCCCEEEecCcccccccCc
Q 024731 230 TSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 230 ~~L~~L~l~~n~l~~~~p~ 248 (263)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45667777777766 4555
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.34 E-value=0.065 Score=27.00 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=11.5
Q ss_pred CCCCEEEecCcccccccCc
Q 024731 230 TSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 230 ~~L~~L~l~~n~l~~~~p~ 248 (263)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45667777777766 4555
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.68 E-value=0.0017 Score=51.84 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=65.9
Q ss_pred cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (263)
.+..+...+.||++.|++...... ++-+..+..|+++.|++. ..|..++....+..+++..|..+ ..|. ++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence 355677788888888877654443 566677788888888887 67888888888888888877765 5676 778
Q ss_pred CCCCCCEEEcCCCCCC
Q 024731 178 SLGNLEELDMSDNAIN 193 (263)
Q Consensus 178 ~l~~L~~L~L~~n~l~ 193 (263)
..+.++++++..|.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8888888888887754
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.64 E-value=0.044 Score=27.06 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=4.8
Q ss_pred CCcEEEcCCCCCC
Q 024731 206 NLEELILDDSDLH 218 (263)
Q Consensus 206 ~L~~L~l~~n~l~ 218 (263)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.58 E-value=0.15 Score=25.57 Aligned_cols=14 Identities=50% Similarity=0.854 Sum_probs=6.1
Q ss_pred CCCEEEcCCCCCCC
Q 024731 181 NLEELDMSDNAINN 194 (263)
Q Consensus 181 ~L~~L~L~~n~l~~ 194 (263)
+|++|+|++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.58 E-value=0.15 Score=25.57 Aligned_cols=14 Identities=50% Similarity=0.854 Sum_probs=6.1
Q ss_pred CCCEEEcCCCCCCC
Q 024731 181 NLEELDMSDNAINN 194 (263)
Q Consensus 181 ~L~~L~L~~n~l~~ 194 (263)
+|++|+|++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.19 E-value=0.12 Score=44.87 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=80.2
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCccccccC-CCCCCCCEEEcCCCcCCCC--cCcccc
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSL-GGLSSLRNLSLIGNRLIGS--IDIKGL 176 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~~~ 176 (263)
....|+.|+.+++...+..+- ..--.+.++|+.+-++.++ |+..--..+ .+.+.|+.+++..+..... +.. .-
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-LS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-hc
Confidence 456677777776654221111 0112456788888888776 332222222 2567788888877764321 221 23
Q ss_pred CCCCCCCEEEcCCCCCCCCC-ch---hhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731 177 DSLGNLEELDMSDNAINNLV-IP---KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 177 ~~l~~L~~L~L~~n~l~~~~-~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 242 (263)
.+++.|+.+.++++...... .. ..-..+..|+.+.+++++.......+.+..+++|+.+++-+++-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 46778888888877643321 00 00133567888888888765333245677788888888877653
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.97 E-value=0.033 Score=43.57 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=46.8
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc-CCCCCCCEEEcCCCC-CCCCCchhhhcCCCCCcE
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNA-INNLVIPKELHNFTNLEE 209 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~ 209 (263)
.++.+|-++..|..+..+.+.++++++.|.+.++.-.+..--+.+ .-.++|+.|++++|. |+..... .+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence 456666666666655566666666777776666653222111011 124567777777664 4443323 3667777777
Q ss_pred EEcCCC
Q 024731 210 LILDDS 215 (263)
Q Consensus 210 L~l~~n 215 (263)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 766553
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.071 Score=41.74 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=54.3
Q ss_pred CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhc-CCCCCcEEEcCCCC-CCcccchhhhhcCCCCC
Q 024731 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH-NFTNLEELILDDSD-LHISQLLQSIASFTSLK 233 (263)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~ 233 (263)
.++.+|-++..+...-- +.+..++.++.|.+.++.--+.-.-.-++ -.++|+.|++++|. |+... ...+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhH
Confidence 46778888877764322 26677788888888877643311111122 24789999999775 67555 56778888888
Q ss_pred EEEecCc
Q 024731 234 YLSMGFC 240 (263)
Q Consensus 234 ~L~l~~n 240 (263)
.|++.+=
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877653
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.13 E-value=0.97 Score=39.48 Aligned_cols=135 Identities=20% Similarity=0.104 Sum_probs=84.9
Q ss_pred cCCcCCcEEEccCccc-CCCCCcccccccCCCCCCCEEEccCCcCC--ccccccCCCCCCCCEEEcCCCcCCCCcC----
Q 024731 100 TPFQQLESLYLIGNNI-AGCVENEGLDTLSRLNNLKFLYLDYNHFN--NSIFSSLGGLSSLRNLSLIGNRLIGSID---- 172 (263)
Q Consensus 100 ~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p---- 172 (263)
.+..+|+.+.++.++. +...-. ..-.+.+.|+.+++..+... +.+-..-.+++.|+++.++++.......
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft---~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFT---MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred cCCCceEEEeccccchhhhhhhh---hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 4568899999988864 211111 11356788999999888664 2222333467899999999887543220
Q ss_pred ccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC-CcccchhhhhcCCCCCEEEe
Q 024731 173 IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKYLSM 237 (263)
Q Consensus 173 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~l~~l~~L~~L~l 237 (263)
...-..+..|+.+.|+++.......-..+..+++|+.+++-+++- +...+...-.++|++++.-+
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 113355778999999999865433223367788999999888763 22221334456777765543
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.22 E-value=0.75 Score=23.25 Aligned_cols=18 Identities=39% Similarity=0.344 Sum_probs=13.9
Q ss_pred CCCCEEEecCcccccccCc
Q 024731 230 TSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 230 ~~L~~L~l~~n~l~~~~p~ 248 (263)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36788888888887 5676
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.07 E-value=1.2 Score=22.56 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=7.9
Q ss_pred CCCCEEEccCCcCC
Q 024731 131 NNLKFLYLDYNHFN 144 (263)
Q Consensus 131 ~~L~~L~Ls~n~l~ 144 (263)
.+|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 35555666666554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.81 E-value=1.2 Score=22.79 Aligned_cols=13 Identities=38% Similarity=0.508 Sum_probs=6.5
Q ss_pred CCcEEEcCCCCCC
Q 024731 206 NLEELILDDSDLH 218 (263)
Q Consensus 206 ~L~~L~l~~n~l~ 218 (263)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.22 E-value=1 Score=40.64 Aligned_cols=62 Identities=32% Similarity=0.411 Sum_probs=28.3
Q ss_pred CCCCCCEEEcCCCcCCCC--cCccccCCCCCCCEEEcCCC--CCCCCCchhhhcCC--CCCcEEEcCCCCCC
Q 024731 153 GLSSLRNLSLIGNRLIGS--IDIKGLDSLGNLEELDMSDN--AINNLVIPKELHNF--TNLEELILDDSDLH 218 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~--~p~~~~~~l~~L~~L~L~~n--~l~~~~~~~~l~~l--~~L~~L~l~~n~l~ 218 (263)
+.+.+..++|++|++-.. +.. .-...|+|+.|+|++| .+... . ++.++ ..|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~~~--~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKISSE--S-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhcch--h-hhhhhcCCCHHHeeecCCccc
Confidence 344555555666654311 110 1123455666666666 22221 1 12222 24566666666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.80 E-value=2.5 Score=38.33 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=6.4
Q ss_pred CcCCcEEEccCccc
Q 024731 102 FQQLESLYLIGNNI 115 (263)
Q Consensus 102 l~~L~~L~l~~n~l 115 (263)
++.+..++|++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 34444444444444
No 91
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=56.77 E-value=8.2 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=16.2
Q ss_pred CCCCcchHHHHHHHHHHHhhhhccCCCcH
Q 024731 1 MCGSKRVWVSELIFILLVVKGWWSEGCLE 29 (263)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 29 (263)
||||+.-+++|+..|+++..+ +...|.+
T Consensus 1 MaMmMTGRVLLVCALCVLWCg-~gG~~~e 28 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG-AGGRCEA 28 (291)
T ss_pred CccchhchHHHHHHHHHHhcC-CCCCcCC
Confidence 777776666665555444434 3445654
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.63 E-value=13 Score=18.37 Aligned_cols=11 Identities=36% Similarity=0.172 Sum_probs=5.3
Q ss_pred CCCCEEEccCC
Q 024731 131 NNLKFLYLDYN 141 (263)
Q Consensus 131 ~~L~~L~Ls~n 141 (263)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.77 E-value=18 Score=39.52 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=26.9
Q ss_pred EcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC
Q 024731 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN 194 (263)
Q Consensus 161 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 194 (263)
||++|+|. .+|...|..+++|++|+|++|.+.-
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcccc
Confidence 57888887 5666688889999999999998764
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.13 E-value=64 Score=29.16 Aligned_cols=94 Identities=14% Similarity=-0.077 Sum_probs=47.6
Q ss_pred CCcEEEEecCCCCCcccccccccccccc--------------CC------cCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFT--------------PF------QQLESLYLIGNNIAGCVENEGLDTLSRLNN 132 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~--------------~l------~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 132 (263)
..++..+|++.|.+...+...+....+. .+ ..+.+++++.|.....+|... .....-.-
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~-n~~a~~~v 242 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTL-NKKAGTLV 242 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHH-HHhhhhhh
Confidence 4567888999888765554444332221 11 245666666666665555421 11122233
Q ss_pred CCEEEccCCcCC---ccccccCCCCCCCCEEEcCCCcC
Q 024731 133 LKFLYLDYNHFN---NSIFSSLGGLSSLRNLSLIGNRL 167 (263)
Q Consensus 133 L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~l 167 (263)
++.++.+...+. +.-+-..+.-++++..+++.|..
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 555555554443 11122334445666666666654
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.41 E-value=22 Score=38.96 Aligned_cols=32 Identities=28% Similarity=0.238 Sum_probs=25.3
Q ss_pred EccCcccCCCCCcccccccCCCCCCCEEEccCCcCC
Q 024731 109 YLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN 144 (263)
Q Consensus 109 ~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 144 (263)
||++|+|....+.. |..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~----F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGI----CANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHH----hccCCCceEEEeeCCccc
Confidence 57888888665543 778889999999998886
No 96
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=23.86 E-value=83 Score=19.09 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhccCCCcHHH
Q 024731 9 VSELIFILLVVKGWWSEGCLEQE 31 (263)
Q Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~ 31 (263)
++|.+.+.+.++....+.|.+.+
T Consensus 5 lLf~aiLalsla~s~gavCeesQ 27 (59)
T PF03823_consen 5 LLFAAILALSLARSFGAVCEESQ 27 (59)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Confidence 34444444444444555676554
Done!