Query 024731
Match_columns 263
No_of_seqs 478 out of 2940
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-34 5.1E-39 243.8 12.1 209 25-248 1-215 (313)
2 3rgz_A Protein brassinosteroid 100.0 2E-31 7E-36 249.6 11.0 221 24-255 6-272 (768)
3 4eco_A Uncharacterized protein 100.0 2.4E-30 8.2E-35 237.6 10.6 205 26-248 26-348 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 9.2E-29 3.2E-33 232.5 10.0 209 24-248 263-590 (876)
5 4fcg_A Uncharacterized protein 100.0 1.9E-29 6.4E-34 214.0 3.3 216 25-257 22-279 (328)
6 2o6q_A Variable lymphocyte rec 99.9 9.5E-25 3.2E-29 180.0 13.9 170 75-257 38-207 (270)
7 3m19_A Variable lymphocyte rec 99.9 2.9E-24 9.9E-29 175.3 12.7 163 74-248 35-197 (251)
8 3m19_A Variable lymphocyte rec 99.9 1.4E-22 4.7E-27 165.3 18.3 180 60-258 3-182 (251)
9 3rgz_A Protein brassinosteroid 99.9 1.1E-23 3.7E-28 197.3 12.0 91 155-248 632-722 (768)
10 2o6s_A Variable lymphocyte rec 99.9 3.4E-23 1.2E-27 164.1 12.7 169 61-248 6-183 (208)
11 1ozn_A Reticulon 4 receptor; N 99.9 6.6E-23 2.3E-27 170.1 14.1 140 98-244 75-215 (285)
12 1ogq_A PGIP-2, polygalacturona 99.9 3.9E-23 1.3E-27 174.0 10.0 163 74-248 101-286 (313)
13 3rfs_A Internalin B, repeat mo 99.9 8.8E-22 3E-26 162.4 17.7 162 73-248 62-223 (272)
14 4fcg_A Uncharacterized protein 99.9 4.5E-23 1.5E-27 174.7 9.9 173 75-259 128-305 (328)
15 3rfs_A Internalin B, repeat mo 99.9 3.1E-22 1.1E-26 165.2 14.6 168 74-258 41-208 (272)
16 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-22 5.4E-27 167.8 12.9 162 75-248 33-195 (285)
17 3e6j_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 158.1 16.7 162 58-247 15-176 (229)
18 2z66_A Variable lymphocyte rec 99.9 5.1E-23 1.8E-27 172.5 7.9 177 61-245 6-214 (306)
19 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.3E-26 163.0 14.8 159 74-248 31-189 (290)
20 3zyj_A Leucine-rich repeat-con 99.9 8.7E-22 3E-26 173.1 14.1 171 74-258 64-258 (440)
21 2z80_A TOLL-like receptor 2, v 99.9 7.7E-23 2.6E-27 174.8 6.8 176 59-248 27-215 (353)
22 3zyi_A Leucine-rich repeat-con 99.9 1.1E-21 3.7E-26 173.1 14.0 181 64-258 56-269 (452)
23 3v47_A TOLL-like receptor 5B a 99.9 7.1E-22 2.4E-26 174.1 12.7 181 59-248 5-230 (455)
24 2v70_A SLIT-2, SLIT homolog 2 99.9 6.2E-21 2.1E-25 152.5 15.5 157 78-248 15-171 (220)
25 2id5_A Lingo-1, leucine rich r 99.9 2E-21 6.7E-26 172.5 13.8 180 63-255 12-200 (477)
26 2o6q_A Variable lymphocyte rec 99.9 1.4E-20 4.7E-25 155.0 17.8 162 74-247 61-222 (270)
27 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-22 1.5E-26 179.4 8.0 170 61-242 3-184 (549)
28 2o6s_A Variable lymphocyte rec 99.9 5.2E-20 1.8E-24 145.7 18.8 157 77-248 10-166 (208)
29 2z66_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 163.2 10.6 162 75-248 79-241 (306)
30 3zyi_A Leucine-rich repeat-con 99.9 4.8E-21 1.6E-25 169.0 13.8 170 74-258 99-293 (452)
31 3zyj_A Leucine-rich repeat-con 99.9 4.6E-21 1.6E-25 168.5 13.3 171 74-259 88-283 (440)
32 2v9t_B SLIT homolog 2 protein 99.9 2.8E-20 9.7E-25 148.7 16.3 136 103-245 32-167 (220)
33 2z62_A TOLL-like receptor 4, v 99.8 2.7E-20 9.3E-25 153.6 16.5 144 74-229 28-172 (276)
34 3oja_B Anopheles plasmodium-re 99.8 5.9E-21 2E-25 174.0 12.4 92 98-194 94-185 (597)
35 3o6n_A APL1; leucine-rich repe 99.8 4.6E-21 1.6E-25 165.9 10.3 132 75-217 46-177 (390)
36 3vq2_A TLR4, TOLL-like recepto 99.8 2.8E-20 9.4E-25 169.6 15.2 161 73-245 31-196 (606)
37 2xot_A Amphoterin-induced prot 99.8 2.5E-20 8.4E-25 159.9 14.0 171 62-244 18-203 (361)
38 4ezg_A Putative uncharacterize 99.8 3.8E-20 1.3E-24 145.4 13.0 151 74-244 44-195 (197)
39 4g8a_A TOLL-like receptor 4; l 99.8 3.1E-20 1.1E-24 169.5 14.2 161 74-245 52-216 (635)
40 4g8a_A TOLL-like receptor 4; l 99.8 4.3E-20 1.5E-24 168.6 14.9 148 103-257 52-199 (635)
41 3t6q_A CD180 antigen; protein- 99.8 7.9E-20 2.7E-24 166.6 16.5 163 74-248 33-197 (606)
42 2ft3_A Biglycan; proteoglycan, 99.8 5.1E-20 1.7E-24 156.0 14.1 173 62-248 33-258 (332)
43 1xku_A Decorin; proteoglycan, 99.8 5.8E-20 2E-24 155.5 14.4 170 61-243 30-253 (330)
44 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-20 7.9E-25 172.4 12.7 163 74-248 25-189 (680)
45 1p9a_G Platelet glycoprotein I 99.8 2.3E-19 7.8E-24 149.3 16.9 157 73-245 54-210 (290)
46 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.5E-24 144.8 14.1 150 62-221 11-169 (220)
47 3v47_A TOLL-like receptor 5B a 99.8 5.5E-20 1.9E-24 162.0 13.0 139 103-248 275-413 (455)
48 2xwt_C Thyrotropin receptor; s 99.8 6.1E-21 2.1E-25 154.3 6.3 170 74-256 31-230 (239)
49 2v9t_B SLIT homolog 2 protein 99.8 1.9E-19 6.6E-24 143.8 14.5 148 62-220 11-167 (220)
50 3j0a_A TOLL-like receptor 5; m 99.8 6.2E-20 2.1E-24 173.5 13.4 176 62-248 14-192 (844)
51 3vq2_A TLR4, TOLL-like recepto 99.8 3.5E-19 1.2E-23 162.3 16.7 166 78-258 15-180 (606)
52 3t6q_A CD180 antigen; protein- 99.8 1E-19 3.5E-24 165.9 13.1 162 75-248 255-418 (606)
53 4b8c_D Glucose-repressible alc 99.8 1.1E-20 3.6E-25 175.7 6.6 208 26-248 128-359 (727)
54 3oja_B Anopheles plasmodium-re 99.8 2.2E-19 7.6E-24 163.6 15.0 134 75-219 52-185 (597)
55 3o6n_A APL1; leucine-rich repe 99.8 3.3E-19 1.1E-23 154.2 15.2 111 74-194 69-179 (390)
56 2xwt_C Thyrotropin receptor; s 99.8 2E-20 7E-25 151.2 6.9 132 97-241 99-237 (239)
57 2z62_A TOLL-like receptor 4, v 99.8 2.4E-19 8.1E-24 148.0 13.4 149 103-258 28-176 (276)
58 2id5_A Lingo-1, leucine rich r 99.8 3.1E-19 1.1E-23 158.2 15.1 164 73-248 55-218 (477)
59 2xot_A Amphoterin-induced prot 99.8 3.8E-19 1.3E-23 152.5 14.6 163 78-256 22-188 (361)
60 2z63_A TOLL-like receptor 4, v 99.8 5.4E-19 1.8E-23 159.8 15.4 164 73-248 27-195 (570)
61 4glp_A Monocyte differentiatio 99.8 2.5E-20 8.4E-25 156.6 5.9 162 75-243 92-264 (310)
62 2z63_A TOLL-like receptor 4, v 99.8 2.9E-19 9.9E-24 161.5 13.1 144 99-248 392-536 (570)
63 2z7x_B TOLL-like receptor 1, v 99.8 1.8E-19 6.1E-24 161.5 11.4 135 100-243 321-457 (520)
64 1h6u_A Internalin H; cell adhe 99.8 7.8E-19 2.7E-23 147.3 14.4 148 74-245 63-210 (308)
65 1wwl_A Monocyte differentiatio 99.8 8.7E-20 3E-24 153.4 8.3 37 131-167 149-185 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-19 8E-24 151.1 10.6 148 101-260 118-267 (317)
67 1wwl_A Monocyte differentiatio 99.8 2.3E-20 7.7E-25 156.9 4.0 144 101-248 93-246 (312)
68 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.2E-23 145.0 14.4 147 74-244 68-214 (291)
69 2ell_A Acidic leucine-rich nuc 99.8 4.1E-19 1.4E-23 135.8 10.6 139 101-248 22-164 (168)
70 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 7.8E-24 153.2 10.1 171 65-255 26-198 (353)
71 1w8a_A SLIT protein; signaling 99.8 9.9E-19 3.4E-23 136.8 12.8 132 77-221 11-142 (192)
72 4eco_A Uncharacterized protein 99.8 1.9E-20 6.5E-25 171.8 3.2 149 96-255 199-376 (636)
73 2z81_A CD282 antigen, TOLL-lik 99.8 2.8E-19 9.6E-24 161.1 10.4 160 79-253 10-170 (549)
74 1h6u_A Internalin H; cell adhe 99.8 1.9E-18 6.5E-23 145.0 14.5 150 74-247 41-190 (308)
75 3oja_A Leucine-rich immune mol 99.8 4.1E-19 1.4E-23 158.0 10.9 147 101-259 118-266 (487)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7E-19 2.4E-23 159.2 11.7 161 74-248 353-515 (562)
77 3e6j_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 139.2 12.6 143 104-258 20-162 (229)
78 1xku_A Decorin; proteoglycan, 99.8 9.4E-19 3.2E-23 148.0 11.5 89 155-248 192-280 (330)
79 2z7x_B TOLL-like receptor 1, v 99.8 2E-18 7E-23 154.6 14.1 160 73-248 323-486 (520)
80 2je0_A Acidic leucine-rich nuc 99.8 1.1E-18 3.7E-23 130.8 9.9 131 101-239 15-149 (149)
81 4fmz_A Internalin; leucine ric 99.8 3.6E-18 1.2E-22 145.2 14.5 143 99-256 195-337 (347)
82 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-18 5.7E-23 159.9 13.1 119 127-247 476-601 (680)
83 4glp_A Monocyte differentiatio 99.8 5.3E-20 1.8E-24 154.5 2.7 160 74-244 117-286 (310)
84 3oja_A Leucine-rich immune mol 99.8 3.8E-19 1.3E-23 158.3 8.1 162 75-257 35-216 (487)
85 4ezg_A Putative uncharacterize 99.8 8.7E-19 3E-23 137.6 9.1 143 99-255 40-184 (197)
86 1xeu_A Internalin C; cellular 99.8 1.1E-17 3.7E-22 137.2 14.6 147 74-245 41-187 (263)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.5E-18 1.9E-22 153.3 13.6 168 74-258 331-500 (562)
88 2ft3_A Biglycan; proteoglycan, 99.8 2.7E-18 9.1E-23 145.4 10.8 86 155-244 193-278 (332)
89 2o6r_A Variable lymphocyte rec 99.8 1.7E-17 5.9E-22 127.9 14.3 131 77-221 10-140 (177)
90 4ecn_A Leucine-rich repeat pro 99.8 2.1E-19 7.2E-24 169.1 3.9 143 96-248 441-612 (876)
91 1m9s_A Internalin B; cell inva 99.8 5.5E-18 1.9E-22 154.2 12.6 149 73-245 64-212 (605)
92 1h6t_A Internalin B; cell adhe 99.8 2.1E-17 7.2E-22 137.5 15.2 157 74-257 46-202 (291)
93 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-18 4.9E-23 146.2 8.0 169 74-257 58-239 (317)
94 3j0a_A TOLL-like receptor 5; m 99.7 5.4E-18 1.9E-22 160.2 11.9 165 74-248 48-222 (844)
95 1o6v_A Internalin A; bacterial 99.7 1.4E-17 4.8E-22 147.4 13.6 130 99-245 239-368 (466)
96 4ay9_X Follicle-stimulating ho 99.7 2.1E-18 7.1E-23 147.2 7.7 185 62-258 9-229 (350)
97 2ast_B S-phase kinase-associat 99.7 3.7E-19 1.3E-23 150.7 2.7 137 100-241 90-233 (336)
98 2wfh_A SLIT homolog 2 protein 99.7 3.8E-17 1.3E-21 127.8 13.9 128 78-220 14-141 (193)
99 2ast_B S-phase kinase-associat 99.7 8.5E-20 2.9E-24 154.6 -1.7 173 60-248 35-216 (336)
100 4fmz_A Internalin; leucine ric 99.7 4.4E-17 1.5E-21 138.5 14.9 130 99-243 217-346 (347)
101 1w8a_A SLIT protein; signaling 99.7 4.8E-17 1.7E-21 127.1 13.5 113 132-247 30-143 (192)
102 4b8c_D Glucose-repressible alc 99.7 1E-18 3.6E-23 162.3 4.7 115 127-248 220-334 (727)
103 1m9s_A Internalin B; cell inva 99.7 8.4E-17 2.9E-21 146.4 16.0 157 74-257 43-199 (605)
104 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.2E-22 135.2 10.9 145 76-245 21-165 (263)
105 1o6v_A Internalin A; bacterial 99.7 6.7E-17 2.3E-21 143.0 13.9 108 127-245 239-346 (466)
106 2o6r_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 120.6 15.5 135 104-248 8-142 (177)
107 2je0_A Acidic leucine-rich nuc 99.7 1.5E-17 5.1E-22 124.5 7.7 116 128-247 14-130 (149)
108 1a9n_A U2A', U2A'; complex (nu 99.7 3E-17 1E-21 126.4 9.5 136 97-244 13-154 (176)
109 3bz5_A Internalin-J, INLJ; leu 99.7 2.3E-16 8E-21 139.2 14.5 142 75-245 65-206 (457)
110 2ell_A Acidic leucine-rich nuc 99.7 7.9E-17 2.7E-21 123.0 9.5 135 74-219 24-161 (168)
111 3cvr_A Invasion plasmid antige 99.7 9.7E-17 3.3E-21 144.7 11.4 150 63-248 49-224 (571)
112 2wfh_A SLIT homolog 2 protein 99.7 4.7E-16 1.6E-20 121.6 13.9 129 106-245 13-141 (193)
113 2ca6_A RAN GTPase-activating p 99.7 6E-19 2.1E-23 152.4 -3.7 142 103-247 159-320 (386)
114 3cvr_A Invasion plasmid antige 99.7 3.1E-16 1.1E-20 141.5 13.8 128 104-256 121-255 (571)
115 2ca6_A RAN GTPase-activating p 99.7 8.2E-18 2.8E-22 145.3 2.0 173 73-248 93-296 (386)
116 3bz5_A Internalin-J, INLJ; leu 99.7 4.4E-16 1.5E-20 137.5 12.6 143 74-245 106-248 (457)
117 3goz_A Leucine-rich repeat-con 99.6 1.4E-17 4.9E-22 142.7 0.1 169 75-244 52-239 (362)
118 3goz_A Leucine-rich repeat-con 99.6 5.8E-17 2E-21 138.9 3.8 169 73-244 21-210 (362)
119 3g39_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 115.0 11.8 108 104-220 10-117 (170)
120 1z7x_W Ribonuclease inhibitor; 99.6 1.1E-17 3.8E-22 147.4 -2.0 142 101-245 254-413 (461)
121 2r9u_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 113.9 12.9 107 105-220 14-120 (174)
122 1jl5_A Outer protein YOPM; leu 99.6 3.1E-15 1E-19 131.9 13.2 78 104-194 132-209 (454)
123 3g06_A SSPH2 (leucine-rich rep 99.6 9.8E-15 3.4E-19 133.1 16.0 88 155-255 221-308 (622)
124 1dce_A Protein (RAB geranylger 99.6 4.6E-15 1.6E-19 134.1 12.6 143 98-248 404-551 (567)
125 3g39_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 111.3 12.8 106 77-195 12-117 (170)
126 1jl5_A Outer protein YOPM; leu 99.6 7.6E-15 2.6E-19 129.4 12.8 82 156-248 318-416 (454)
127 1a9n_A U2A', U2A'; complex (nu 99.6 2.4E-15 8.3E-20 115.7 8.1 131 74-219 19-154 (176)
128 1ds9_A Outer arm dynein; leuci 99.6 4E-18 1.4E-22 133.9 -8.1 133 98-243 43-185 (198)
129 2r9u_A Variable lymphocyte rec 99.6 2.3E-14 7.9E-19 110.1 12.8 106 77-195 15-120 (174)
130 3g06_A SSPH2 (leucine-rich rep 99.6 8.6E-15 2.9E-19 133.5 11.2 67 180-258 221-287 (622)
131 1dce_A Protein (RAB geranylger 99.6 1.6E-14 5.4E-19 130.6 12.0 122 104-237 442-567 (567)
132 1ds9_A Outer arm dynein; leuci 99.6 8E-18 2.7E-22 132.2 -8.4 143 99-248 14-158 (198)
133 1z7x_W Ribonuclease inhibitor; 99.6 3.8E-16 1.3E-20 137.6 0.8 40 204-243 255-297 (461)
134 3un9_A NLR family member X1; l 99.5 2.9E-15 9.8E-20 128.7 0.4 167 74-244 72-253 (372)
135 3sb4_A Hypothetical leucine ri 99.5 4.6E-14 1.6E-18 119.2 7.2 99 154-258 225-324 (329)
136 4ay9_X Follicle-stimulating ho 99.4 4.2E-13 1.4E-17 114.3 10.2 164 78-257 13-204 (350)
137 2ifg_A High affinity nerve gro 99.4 7.8E-13 2.7E-17 112.3 10.2 105 78-195 12-118 (347)
138 2ifg_A High affinity nerve gro 99.4 1.2E-12 4E-17 111.2 10.2 106 106-220 11-118 (347)
139 3ogk_B Coronatine-insensitive 99.3 1.3E-13 4.5E-18 125.0 -0.6 140 102-245 377-528 (592)
140 3un9_A NLR family member X1; l 99.3 1.6E-13 5.5E-18 117.8 -0.1 164 74-243 101-283 (372)
141 3sb4_A Hypothetical leucine ri 99.3 4.1E-11 1.4E-15 101.0 11.5 103 130-237 225-328 (329)
142 3ogk_B Coronatine-insensitive 99.2 1.2E-12 4E-17 118.7 1.9 90 76-168 140-233 (592)
143 2p1m_B Transport inhibitor res 99.0 6.2E-11 2.1E-15 107.4 3.2 37 204-240 288-324 (594)
144 3rw6_A Nuclear RNA export fact 99.0 2.3E-12 7.8E-17 105.1 -5.8 80 152-236 167-257 (267)
145 2p1m_B Transport inhibitor res 99.0 9E-12 3.1E-16 112.9 -2.8 89 152-242 429-518 (594)
146 1io0_A Tropomodulin; LRR prote 99.0 2.5E-10 8.5E-15 88.3 3.0 116 127-243 32-164 (185)
147 1io0_A Tropomodulin; LRR prote 98.9 1.4E-10 4.9E-15 89.6 0.9 120 98-218 31-164 (185)
148 4fdw_A Leucine rich hypothetic 98.9 5.9E-09 2E-13 90.2 8.7 150 94-254 171-345 (401)
149 2ra8_A Uncharacterized protein 98.9 1.9E-09 6.5E-14 91.9 5.4 139 98-244 167-321 (362)
150 4fdw_A Leucine rich hypothetic 98.8 3.6E-08 1.2E-12 85.3 11.8 140 96-248 219-362 (401)
151 2ra8_A Uncharacterized protein 98.7 2.1E-09 7.1E-14 91.7 1.1 142 99-245 135-294 (362)
152 3rw6_A Nuclear RNA export fact 98.6 3E-08 1E-12 80.7 5.6 84 128-212 167-258 (267)
153 3e4g_A ATP synthase subunit S, 98.5 8.5E-08 2.9E-12 72.9 3.8 84 131-216 61-150 (176)
154 3e4g_A ATP synthase subunit S, 98.3 1.3E-07 4.4E-12 71.9 1.3 83 104-191 62-150 (176)
155 4gt6_A Cell surface protein; l 98.1 2.1E-05 7.3E-10 67.5 10.7 108 127-241 261-368 (394)
156 1pgv_A TMD-1, tropomodulin TMD 98.0 1.2E-06 4E-11 67.8 1.6 114 129-243 39-170 (197)
157 1pgv_A TMD-1, tropomodulin TMD 98.0 4.7E-06 1.6E-10 64.4 4.2 119 99-218 37-170 (197)
158 4h09_A Hypothetical leucine ri 97.9 0.00011 3.8E-09 62.5 11.6 131 99-240 213-343 (379)
159 4fs7_A Uncharacterized protein 97.8 0.00012 4.2E-09 62.7 10.9 105 127-240 272-376 (394)
160 4gt6_A Cell surface protein; l 97.8 0.00011 3.8E-09 63.0 10.3 133 96-242 258-390 (394)
161 4h09_A Hypothetical leucine ri 97.7 0.00022 7.5E-09 60.7 10.0 125 96-231 233-357 (379)
162 4fs7_A Uncharacterized protein 97.6 0.00033 1.1E-08 60.1 10.5 102 126-235 292-393 (394)
163 3rfe_A Platelet glycoprotein I 97.1 0.0014 4.8E-08 47.0 6.5 57 158-218 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0018 6E-08 46.5 6.7 36 132-167 32-67 (130)
165 2lz0_A Uncharacterized protein 54.7 25 0.00087 23.2 5.0 14 175-188 38-51 (100)
166 2lz0_A Uncharacterized protein 45.5 46 0.0016 21.8 5.2 37 127-164 16-52 (100)
167 3ox7_P MH027; urokinase-type p 21.0 34 0.0012 15.3 0.7 10 59-68 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-34 Score=243.84 Aligned_cols=209 Identities=24% Similarity=0.408 Sum_probs=169.6
Q ss_pred CCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCC--CCceEEcCCC--CcEEEEecCCCCCcccccccccccccc
Q 024731 25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFT 100 (263)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~ 100 (263)
+.|.++|++||++||+++.++. .+++|. .+.+||. |.||.|+... ++|+.++++++.+..... .+..+.
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~---~~~~l~ 73 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP---IPSSLA 73 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE---CCGGGG
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc---cChhHh
Confidence 3699999999999999997554 688997 4678998 9999998644 799999999999852102 244678
Q ss_pred CCcCCcEEEccC-cccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731 101 PFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (263)
Q Consensus 101 ~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 179 (263)
.+++|++|++++ |.+.+.+|.. +..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|. .+..+
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l 148 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSL 148 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGC
T ss_pred CCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcC
Confidence 899999999995 8888877764 78888999999999998888888888889999999999988877887 78888
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCC-CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFT-NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++|++|++++|.+++.+|.. +..++ +|++|++++|++++.. |..+..++ |++|++++|.+++.+|.
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~-~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp TTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred CCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC-ChHHhCCc-ccEEECcCCcccCcCCH
Confidence 88999999999888767765 77777 8888888888887666 67777776 77777777777765554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2e-31 Score=249.56 Aligned_cols=221 Identities=24% Similarity=0.269 Sum_probs=155.5
Q ss_pred cCCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCCCCceEEcCCCCcEEEEecCCCCCccccc-cc---------
Q 024731 24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAE-WY--------- 93 (263)
Q Consensus 24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~-~~--------- 93 (263)
++.+.++|++||++||+++.++. .+++|. .+.+||.|.||+|+ .++|++++++++.+...-. ..
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 44668899999999999998666 799997 46789999999997 6899999999988742100 00
Q ss_pred ---------c--ccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC-CCCCCCCEEE
Q 024731 94 ---------M--NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLS 161 (263)
Q Consensus 94 ---------~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ 161 (263)
+ .+..++.+++|++|++++|.+.+.+|.. ..++.+++|++|++++|.+++.+|..+ .++++|++|+
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 0 1145777888888888888887766541 125666667777777666665555543 4555555555
Q ss_pred cCCCcCCCCcCcc------------------------ccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC
Q 024731 162 LIGNRLIGSIDIK------------------------GLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217 (263)
Q Consensus 162 L~~n~l~~~~p~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 217 (263)
+++|.+++..|.. .+..+++|++|++++|.+.+.+|. ++++++|++|++++|.+
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcC
Confidence 5555554333220 125667777777777777775443 78888888888888888
Q ss_pred CcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731 218 HISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS 255 (263)
Q Consensus 218 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~ 255 (263)
++.. |..++.+++|++|++++|.+++.+|...+.+|+
T Consensus 236 ~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 236 SGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp CSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 8777 788888888888888888888887774444443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.4e-30 Score=237.59 Aligned_cols=205 Identities=18% Similarity=0.243 Sum_probs=173.9
Q ss_pred CCcHHHHHHHHHHhhhCC-CCCCCC-------CCCcCCCCCCCCCCC---CceEEcCCCCcEEEEecCCCCCcccccccc
Q 024731 26 GCLEQERYALLQLRHFFN-DDQCLQ-------NCWVDDENYSDCCQW---ERVECNDTTGRVIKLDLRDTRNWESAEWYM 94 (263)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~-~~~~~~-------~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~ 94 (263)
....+|+.||.++|.++. +++... .+|+ .+.+||.| .||.|+. .++|++|+++++++. |..
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~--g~l-- 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS--GRV-- 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE--EEE--
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCcccC--CcC--
Confidence 455679999999999988 333322 3797 46899999 9999986 489999999999984 442
Q ss_pred ccccccCCcCCcEEEccCccc-----------------------------------------------------------
Q 024731 95 NASLFTPFQQLESLYLIGNNI----------------------------------------------------------- 115 (263)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~n~l----------------------------------------------------------- 115 (263)
+..++.+++|++|++++|.+
T Consensus 98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred -ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 35689999999999999954
Q ss_pred -------------------CCCCCcccccccCCCCCCCEEEccCCcCCcc-----------------ccccCC--CCCCC
Q 024731 116 -------------------AGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----------------IFSSLG--GLSSL 157 (263)
Q Consensus 116 -------------------~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L 157 (263)
++ +| ..++++++|++|+|++|.+++. +|..++ ++++|
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VS----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-EC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred cccccchhhhhhccccCCCcc-CC----HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 12 22 3478899999999999999985 899999 99999
Q ss_pred CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCC-CCC-CCchhhhcCC------CCCcEEEcCCCCCCcccchh--hhh
Q 024731 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKELHNF------TNLEELILDDSDLHISQLLQ--SIA 227 (263)
Q Consensus 158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~l~~l------~~L~~L~l~~n~l~~~~~~~--~l~ 227 (263)
++|++++|.+.+.+|. .+.++++|++|++++|. +++ .+|.. ++.+ ++|++|++++|+++ .+ |. .++
T Consensus 252 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~-~i-p~~~~l~ 327 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK-TF-PVETSLQ 327 (636)
T ss_dssp CEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-SC-CCHHHHT
T ss_pred CEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-cc-Cchhhhc
Confidence 9999999999999997 89999999999999998 887 67765 7665 89999999999998 66 77 899
Q ss_pred cCCCCCEEEecCcccccccCc
Q 024731 228 SFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 228 ~l~~L~~L~l~~n~l~~~~p~ 248 (263)
.+++|++|++++|.++|.+|.
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip~ 348 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLPA 348 (636)
T ss_dssp TCTTCCEEECCSCCCEEECCC
T ss_pred cCCCCCEEeCcCCcCccchhh
Confidence 999999999999999988984
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.2e-29 Score=232.47 Aligned_cols=209 Identities=15% Similarity=0.196 Sum_probs=164.3
Q ss_pred cCCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCC--CCCCC--CCC------------CceEEcCCCCcEEEEecCCCCCc
Q 024731 24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDE--NYSDC--CQW------------ERVECNDTTGRVIKLDLRDTRNW 87 (263)
Q Consensus 24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~ 87 (263)
.+.+..+|+.||++||+++.++ +|.... ...+| |.| .||.|+. .++|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 4456788999999999999743 676211 01344 999 9999986 689999999999984
Q ss_pred cccccccccccccCCcCCcEEEc-cCcccCCCCCcc--------------------------------------------
Q 024731 88 ESAEWYMNASLFTPFQQLESLYL-IGNNIAGCVENE-------------------------------------------- 122 (263)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~-------------------------------------------- 122 (263)
|. + +..++.+++|+.|+| ++|.+.|..+..
T Consensus 337 --G~--i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 337 --GR--V-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp --EE--E-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred --Cc--C-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 43 2 456899999999999 777654431100
Q ss_pred ----------------------------cccccCCCCCCCEEEccCCcCCc-----------------cccccCC--CCC
Q 024731 123 ----------------------------GLDTLSRLNNLKFLYLDYNHFNN-----------------SIFSSLG--GLS 155 (263)
Q Consensus 123 ----------------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~ 155 (263)
++..+.++++|++|+|++|.+++ .+|..++ +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 22347888999999999999997 3888887 999
Q ss_pred CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCC-CCC-CCchhhhcCC-------CCCcEEEcCCCCCCcccchh--
Q 024731 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKELHNF-------TNLEELILDDSDLHISQLLQ-- 224 (263)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~~-- 224 (263)
+|++|++++|.+.+.+|. .+.++++|++|++++|. +++ .+|.. ++++ ++|++|++++|.++ .+ |.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~ 567 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE-EF-PASA 567 (876)
T ss_dssp TCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHH
T ss_pred CCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC-cc-CChh
Confidence 999999999999989997 89999999999999998 887 56654 4444 48888899888888 55 66
Q ss_pred hhhcCCCCCEEEecCcccccccCc
Q 024731 225 SIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 225 ~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
.++.+++|++|++++|.++ .+|.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp~ 590 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLEA 590 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCCC
T ss_pred hhhcCCCCCEEECCCCCcc-cchh
Confidence 7888888888888888888 7773
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-29 Score=214.01 Aligned_cols=216 Identities=18% Similarity=0.232 Sum_probs=132.3
Q ss_pred CCCcHHHHHHHHHHhhhCC-CCCCCCCCCcC-CCCCCCCCCCCceEEcC--------CCCcEEEEecCCCCCcccccccc
Q 024731 25 EGCLEQERYALLQLRHFFN-DDQCLQNCWVD-DENYSDCCQWERVECND--------TTGRVIKLDLRDTRNWESAEWYM 94 (263)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~W~~-~~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~~ 94 (263)
..+..+|++||++||+.+. ++......|.. .....++|.|.|+.|.. ...+|+.++++++.+...
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~l----- 96 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF----- 96 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSC-----
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhc-----
Confidence 3566789999999999885 44445677841 12467899999999952 346899999999987532
Q ss_pred ccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCC----
Q 024731 95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGS---- 170 (263)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---- 170 (263)
+..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.++ .+|..++++++|++|++++|++.+.
T Consensus 97 -p~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 97 -PDQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp -CSCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred -ChhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 223455666666666666665 33332 455555555555555555 4455555555555555555444444
Q ss_pred ----------------------------cCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccc
Q 024731 171 ----------------------------IDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL 222 (263)
Q Consensus 171 ----------------------------~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 222 (263)
+|. .+..+++|++|++++|.+++ +|+. +..+++|++|++++|.+.+.+
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~-l~~~-l~~l~~L~~L~Ls~n~~~~~~- 245 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSA-LGPA-IHHLPKLEELDLRGCTALRNY- 245 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCC-CCGG-GGGCTTCCEEECTTCTTCCBC-
T ss_pred HhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCc-Cchh-hccCCCCCEEECcCCcchhhh-
Confidence 443 45555666666666666655 4443 566666666666666666555
Q ss_pred hhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731 223 LQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 223 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
|..++.+++|++|++++|.+.+.+|. .+.++++|
T Consensus 246 p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L 279 (328)
T 4fcg_A 246 PPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQL 279 (328)
T ss_dssp CCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTC
T ss_pred HHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCC
Confidence 56666666666666666666666665 34444333
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.5e-25 Score=180.04 Aligned_cols=170 Identities=22% Similarity=0.251 Sum_probs=124.2
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.++.|+++++.+.. +.+..|..+++|++|++++|.++...+.. +..+++|++|++++|.+++..+..+.++
T Consensus 38 ~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS-----LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp TCSEEECCSSCCSC-----CCTTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECcCCCCCe-----eCHHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 45667777776642 33446788888999999998887655542 6778888888888888886666677888
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.. +..+..+++|++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 185 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKT 185 (270)
T ss_dssp SSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE
T ss_pred cCCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCE
Confidence 8888888888888754443 67788888888888888877 44444778888888888888887554 566778888888
Q ss_pred EEecCcccccccCccchhcHHHH
Q 024731 235 LSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 235 L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
|++++|++++ +|...+..+++|
T Consensus 186 L~L~~N~l~~-~~~~~~~~l~~L 207 (270)
T 2o6q_A 186 LKLDNNQLKR-VPEGAFDSLEKL 207 (270)
T ss_dssp EECCSSCCSC-CCTTTTTTCTTC
T ss_pred EECCCCcCCc-CCHHHhccccCC
Confidence 8888888874 444234444433
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.9e-24 Score=175.26 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=134.8
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.+++++|.+.. +.+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..|..
T Consensus 35 ~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT-----LSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCCCcCc-----cCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcc
Confidence 357788888888753 33456788999999999999998876653 788999999999999999777778889
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+++ +|...+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|+
T Consensus 106 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 182 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQ 182 (251)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCC
T ss_pred cCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCC
Confidence 9999999999999885 444367889999999999999988 45544888999999999999998655 67888999999
Q ss_pred EEEecCcccccccCc
Q 024731 234 YLSMGFCTLTGALHG 248 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~ 248 (263)
+|++++|++++..+.
T Consensus 183 ~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 183 TITLFGNQFDCSRCE 197 (251)
T ss_dssp EEECCSCCBCTTSTT
T ss_pred EEEeeCCceeCCccc
Confidence 999999999876443
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.4e-22 Score=165.30 Aligned_cols=180 Identities=22% Similarity=0.286 Sum_probs=147.9
Q ss_pred CCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEcc
Q 024731 60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD 139 (263)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls 139 (263)
+||.|.|..|.. ..+.++++++.+...+. . + .+.++.|++++|.+.+..+.. +..+++|++|+++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~-----~-~--~~~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPS-----G-I--PADTEKLDLQSTGLATLSDAT----FRGLTKLTWLNLD 67 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSCCS-----C-C--CTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccccCC-----C-C--CCCCCEEEccCCCcCccCHhH----hcCcccCCEEECC
Confidence 578899999953 33468999988764322 1 2 258999999999999877754 8899999999999
Q ss_pred CCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCc
Q 024731 140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHI 219 (263)
Q Consensus 140 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 219 (263)
+|.+++..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++ +++..+..+++|++|++++|++++
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCc
Confidence 9999988888899999999999999999854444 78999999999999999998 555558899999999999999996
Q ss_pred ccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 220 SQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 220 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
.. +..++.+++|++|++++|++++..|. .+.++++|+
T Consensus 146 ~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~ 182 (251)
T 3m19_A 146 IP-AGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQ 182 (251)
T ss_dssp CC-TTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred cC-HHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCC
Confidence 55 66899999999999999999965554 455554443
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.1e-23 Score=197.30 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=51.7
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|++|++++|+++|.+|. .++.+++|++|+|++|.++|.+|.. ++++++|++|++++|+++|.+ |..++.+++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~ 708 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRI-PQAMSALTMLTE 708 (768)
T ss_dssp BCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECC-CGGGGGCCCCSE
T ss_pred ccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCE
Confidence 3444555555555555554 5555555555555555555555544 555555666666666665555 555556666666
Q ss_pred EEecCcccccccCc
Q 024731 235 LSMGFCTLTGALHG 248 (263)
Q Consensus 235 L~l~~n~l~~~~p~ 248 (263)
|++++|+++|.||.
T Consensus 709 L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 709 IDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCSSEEEEECCS
T ss_pred EECcCCcccccCCC
Confidence 66666666666555
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.4e-23 Score=164.11 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=106.9
Q ss_pred CCCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCC
Q 024731 61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (263)
Q Consensus 61 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~ 131 (263)
.|.|.++.|... ..+++.+++++|.+.. +.+..+..+++|++|++++|.+++..+.. +..++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~ 76 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLT 76 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----CChhhhcccccCcEEECCCCccCccChhh----cCCCC
Confidence 478999999752 1246667777776642 22344566677777777777766544432 56667
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEE
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 211 (263)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..+++|++|+
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCccce-eCHHHhccCCCccEEE
Confidence 777777777777655455566677777777777776643332 56666777777777777766 3333366667777777
Q ss_pred cCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 212 LDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 212 l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+++|.+.+. +++|+.|+++.|.++|.+|.
T Consensus 155 l~~N~~~~~--------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 155 LHDNPWDCT--------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCSCCBCCC--------TTTTHHHHHHHHHCTTTBBC
T ss_pred ecCCCeecC--------CCCHHHHHHHHHhCCceeec
Confidence 777765532 33566666777777777765
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=6.6e-23 Score=170.13 Aligned_cols=140 Identities=24% Similarity=0.269 Sum_probs=78.3
Q ss_pred cccCCcCCcEEEccCcc-cCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc
Q 024731 98 LFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 176 (263)
.+..+++|++|++++|. +....+.. +..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+. .+
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~ 149 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPAT----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-TF 149 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHH----hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-Hh
Confidence 34455555555555554 43332322 45555666666666665554455555566666666666665532222 45
Q ss_pred CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731 177 DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 177 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 244 (263)
..+++|++|++++|.+++ ++...+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus 150 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp TTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCc
Confidence 556666666666666655 33333555666666666666666544 5566666666666666666664
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.9e-23 Score=173.95 Aligned_cols=163 Identities=21% Similarity=0.252 Sum_probs=114.3
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+.. ..+..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..
T Consensus 101 ~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 101 TQLHYLYITHTNVSG-----AIPDFLSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp TTCSEEEEEEECCEE-----ECCGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred CCCCEEECcCCeeCC-----cCCHHHhCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 356778888887742 12345667777777777777777665543 566666666666666666666666666
Q ss_pred CC-CCCEEEcCCCcCCCCcCc----------------------cccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEE
Q 024731 154 LS-SLRNLSLIGNRLIGSIDI----------------------KGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210 (263)
Q Consensus 154 l~-~L~~L~L~~n~l~~~~p~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 210 (263)
++ +|++|++++|.+++.+|. ..+..+++|++|++++|.+++.. +. +..+++|++|
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L 249 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNGL 249 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GG-CCCCTTCCEE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec-Cc-ccccCCCCEE
Confidence 65 666666666655433332 15666777777777777777643 33 6778888888
Q ss_pred EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++++|++++.+ |..+..+++|++|++++|+++|.+|.
T Consensus 250 ~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 250 DLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp ECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ECcCCcccCcC-ChHHhcCcCCCEEECcCCcccccCCC
Confidence 99989888777 88899999999999999999998888
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=8.8e-22 Score=162.43 Aligned_cols=162 Identities=25% Similarity=0.263 Sum_probs=139.7
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
-..++.+++++|.+... ..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..++
T Consensus 62 l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI-------SALKELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCcEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCccChhH----hcCCcCCCEEECCCCcCCccCHHHhc
Confidence 34788999999988532 35788999999999999999876653 78899999999999999977777789
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
.+++|++|++++|.+++..+. .+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 207 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSL 207 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred cCCCCCEEECCCCccCccCHH-HhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCC
Confidence 999999999999999854443 68899999999999999998 44544889999999999999999766 7778999999
Q ss_pred CEEEecCcccccccCc
Q 024731 233 KYLSMGFCTLTGALHG 248 (263)
Q Consensus 233 ~~L~l~~n~l~~~~p~ 248 (263)
++|++++|++.+..|.
T Consensus 208 ~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 208 QYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred CEEEccCCCccccCcH
Confidence 9999999999987764
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.5e-23 Score=174.73 Aligned_cols=173 Identities=19% Similarity=0.209 Sum_probs=140.6
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccc-----cccCCCCCCCEEEccCCcCCccccc
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGL-----DTLSRLNNLKFLYLDYNHFNNSIFS 149 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~~p~ 149 (263)
+++.+++++|.+.. + +..+..+++|++|++++|++.+.+|.... ..+..+++|++|++++|.++ .+|.
T Consensus 128 ~L~~L~Ls~n~l~~-----l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~ 200 (328)
T 4fcg_A 128 GLETLTLARNPLRA-----L-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200 (328)
T ss_dssp TCSEEEEESCCCCC-----C-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG
T ss_pred CCCEEECCCCcccc-----C-cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH
Confidence 45566666665531 1 33467777888888888777766665311 11334889999999999998 7888
Q ss_pred cCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcC
Q 024731 150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASF 229 (263)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l 229 (263)
.++++++|++|++++|.+++ +|. .+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+ |..++.+
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~-p~~~~~l 276 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTL-PLDIHRL 276 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC-CCG-GGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBC-CTTGGGC
T ss_pred hhcCCCCCCEEEccCCCCCc-Cch-hhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhc-chhhhcC
Confidence 89999999999999999985 676 7899999999999999999988776 999999999999999999888 8899999
Q ss_pred CCCCEEEecCcccccccCccchhcHHHHHH
Q 024731 230 TSLKYLSMGFCTLTGALHGQGKLRVSEAFM 259 (263)
Q Consensus 230 ~~L~~L~l~~n~l~~~~p~~~l~~L~~L~~ 259 (263)
++|++|++++|++.+.+|. .+.+|+++..
T Consensus 277 ~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~ 305 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPS-LIAQLPANCI 305 (328)
T ss_dssp TTCCEEECTTCTTCCCCCG-GGGGSCTTCE
T ss_pred CCCCEEeCCCCCchhhccH-HHhhccCceE
Confidence 9999999999999999998 6666665544
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.1e-22 Score=165.17 Aligned_cols=168 Identities=23% Similarity=0.230 Sum_probs=141.0
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.++++++.+... ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+..+.+
T Consensus 41 ~~L~~L~l~~~~i~~~-------~~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV-------QGIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp TTCCEEECTTSCCCCC-------TTGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cceeeeeeCCCCcccc-------cccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 4688899999987532 2478899999999999999874 2 2889999999999999999877778899
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+++..+. .+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..++.+++|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 184 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLK 184 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CcCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCC
Confidence 99999999999999865544 78999999999999999998 45554889999999999999999665 77789999999
Q ss_pred EEEecCcccccccCccchhcHHHHH
Q 024731 234 YLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
+|++++|++++..|. .+.++++|+
T Consensus 185 ~L~L~~N~l~~~~~~-~~~~l~~L~ 208 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDG-VFDRLTSLQ 208 (272)
T ss_dssp EEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred EEECCCCcCCccCHH-HHhCCcCCC
Confidence 999999999976554 444444433
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.6e-22 Score=167.84 Aligned_cols=162 Identities=20% Similarity=0.186 Sum_probs=86.1
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCccccccCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGG 153 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~ 153 (263)
.++.++++++.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|. ++...|..+..
T Consensus 33 ~l~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 33 ASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CceEEEeeCCcCCc-----cCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 45555665555532 22334555555666666665555443332 5555566666666654 44444555555
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+.+..|. .+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.. +..+..+++|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 180 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLD 180 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred CcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccC-HHHhcCccccC
Confidence 56666666666655543333 45555566666666665555 22223555556666666666555332 34455555666
Q ss_pred EEEecCcccccccCc
Q 024731 234 YLSMGFCTLTGALHG 248 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~ 248 (263)
+|++++|.+++..|.
T Consensus 181 ~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPH 195 (285)
T ss_dssp EEECCSSCCCEECTT
T ss_pred EEECCCCcccccCHh
Confidence 666666655544443
No 17
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=1e-21 Score=158.06 Aligned_cols=162 Identities=24% Similarity=0.245 Sum_probs=128.7
Q ss_pred CCCCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEE
Q 024731 58 YSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137 (263)
Q Consensus 58 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~ 137 (263)
+.+.|.|.+|.|... + +.. ++.. + .++|++|++++|.+++..+.. +..+++|++|+
T Consensus 15 ~~~~Cs~~~v~c~~~--~----------l~~-----ip~~-~--~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ 70 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK--R----------HAS-----VPAG-I--PTNAQILYLHDNQITKLEPGV----FDSLINLKELY 70 (229)
T ss_dssp TTCEEETTEEECTTS--C----------CSS-----CCSC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEE
T ss_pred CCCEEeCCEeEccCC--C----------cCc-----cCCC-C--CCCCCEEEcCCCccCccCHHH----hhCccCCcEEE
Confidence 667899999999641 1 211 1111 1 278899999999998876653 78899999999
Q ss_pred ccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC
Q 024731 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217 (263)
Q Consensus 138 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 217 (263)
|++|.++...+..|..+++|++|++++|.+++. +...+..+++|++|++++|.++. +|.. +..+++|++|++++|++
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLTE-LPRG-IERLTHLTHLALDQNQL 147 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCS-CCTT-GGGCTTCSEEECCSSCC
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCcccc-cCcc-cccCCCCCEEECCCCcC
Confidence 999999865556778999999999999998854 44367889999999999999985 6765 88899999999999999
Q ss_pred CcccchhhhhcCCCCCEEEecCcccccccC
Q 024731 218 HISQLLQSIASFTSLKYLSMGFCTLTGALH 247 (263)
Q Consensus 218 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 247 (263)
++.. +..+..+++|+.|++++|++.+..+
T Consensus 148 ~~~~-~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 148 KSIP-HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCC-TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CccC-HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8655 6778889999999999999887655
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.1e-23 Score=172.45 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=103.6
Q ss_pred CCCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCC--Ccc-------
Q 024731 61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV--ENE------- 122 (263)
Q Consensus 61 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~------- 122 (263)
.|.|.++.|... ...++.+++++|.+.. +....|..+++|++|++++|.++... +..
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 378999999752 2468899999998853 33455778888888888888876331 111
Q ss_pred ------------cccccCCCCCCCEEEccCCcCCcccc-ccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCC
Q 024731 123 ------------GLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189 (263)
Q Consensus 123 ------------~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~ 189 (263)
....+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. .+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTT
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCC
Confidence 00113344445555555554443222 3445555555555555555443333 455556666666666
Q ss_pred CCCCC-CCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 190 NAINN-LVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 190 n~l~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
|.+.+ ..|. .+..+++|++|++++|++++.. +..+..+++|++|++++|.+++.
T Consensus 160 n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 160 NSFQENFLPD-IFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp CEEGGGEECS-CCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBC
T ss_pred Cccccccchh-HHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCcc
Confidence 65554 2233 2556666666666666666544 55666666666666666666643
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.3e-21 Score=163.00 Aligned_cols=159 Identities=22% Similarity=0.210 Sum_probs=122.6
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.+++++|.+.. +.+..|..+++|++|++++|.+++..+ ...+++|++|++++|.++ .+|..+..
T Consensus 31 ~~l~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 98 (290)
T 1p9a_G 31 KDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQT 98 (290)
T ss_dssp TTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred CCCCEEEcCCCcCCc-----cCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhcc
Confidence 467889999998853 334567888899999999988876433 367788888888888887 67777888
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|++++..+. .+..+++|++|++++|.+++ +++..+..+++|+.|++++|+++... +..+..+++|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~ 175 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLD 175 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCC
Confidence 88888888888888754333 78888888888888888887 45555778888888888888887543 55677788888
Q ss_pred EEEecCcccccccCc
Q 024731 234 YLSMGFCTLTGALHG 248 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~ 248 (263)
+|++++|+++ .+|.
T Consensus 176 ~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 176 TLLLQENSLY-TIPK 189 (290)
T ss_dssp EEECCSSCCC-CCCT
T ss_pred EEECCCCcCC-ccCh
Confidence 8888888887 5665
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=173.15 Aligned_cols=171 Identities=21% Similarity=0.187 Sum_probs=100.0
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.+++++|.+.. +.+..|..+++|++|++++|.+++..+.. |.++++|++|+|++|++++..+..|..
T Consensus 64 ~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI-----IKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSCCCCE-----ECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCcEEEccCCcCCe-----eCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 346677888777653 22344556666666666666665443332 555555555555555555433344555
Q ss_pred CCCCCEEEcCCCcCC------------------------CCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcE
Q 024731 154 LSSLRNLSLIGNRLI------------------------GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209 (263)
Q Consensus 154 l~~L~~L~L~~n~l~------------------------~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 209 (263)
+++|++|++++|.+. +.++...+..+++|++|++++|.++. +| . +..+++|++
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~-~~~l~~L~~ 211 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-N-LTPLIKLDE 211 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-C-CTTCSSCCE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-c-cCCCcccCE
Confidence 555555555555544 23333345556666666666666654 33 2 566677777
Q ss_pred EEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
|++++|++++.. +..+..+++|++|++++|++++..|. .+.++++|+
T Consensus 212 L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 258 (440)
T 3zyj_A 212 LDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLV 258 (440)
T ss_dssp EECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCC
T ss_pred EECCCCccCccC-hhhhccCccCCEEECCCCceeEEChh-hhcCCCCCC
Confidence 777777777555 66777777777777777777755444 444444433
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=7.7e-23 Score=174.83 Aligned_cols=176 Identities=28% Similarity=0.332 Sum_probs=132.3
Q ss_pred CCCCCCCceEEcC-----------CCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCccccccc
Q 024731 59 SDCCQWERVECND-----------TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL 127 (263)
Q Consensus 59 ~~~c~w~gv~c~~-----------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 127 (263)
...|.|.++ |+- ...+++.+++++|.+.. +.+..+..+++|++|++++|.+++..+.. +
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~ 96 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----ISNSDLQRCVNLQALVLTSNGINTIEEDS----F 96 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----T
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----cCHHHhccCCCCCEEECCCCccCccCHhh----c
Confidence 455777766 542 12368899999998853 33446788899999999999888766543 7
Q ss_pred CCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCC-CCCCCchhhhcCCC
Q 024731 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNA-INNLVIPKELHNFT 205 (263)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~ 205 (263)
..+++|++|++++|.+++..+..++++++|++|++++|.+.+ +|. ..+..+++|++|++++|. +.. +++..+..++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~ 174 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLT 174 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCC
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc-cCHHHccCCC
Confidence 888999999999999986555558888999999999998874 443 367888899999998885 544 4444478888
Q ss_pred CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+|++|++++|++++.. +..+..+++|++|++++|.++ .+|.
T Consensus 175 ~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~-~~~~ 215 (353)
T 2z80_A 175 FLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHI-LLLE 215 (353)
T ss_dssp EEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSCST-THHH
T ss_pred CCCEEECCCCCcCccC-HHHHhccccCCeecCCCCccc-cchh
Confidence 8888888888888665 777888888888888888775 3443
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.1e-21 Score=173.13 Aligned_cols=181 Identities=22% Similarity=0.198 Sum_probs=120.0
Q ss_pred CCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCC
Q 024731 64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (263)
Q Consensus 64 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~ 134 (263)
|..+.|... ...++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----IQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----ECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence 466777642 2468899999998853 33455777778888888887777655443 66677777
Q ss_pred EEEccCCcCCccccccCCCCCCCCEEEcCCCcCCC------------------------CcCccccCCCCCCCEEEcCCC
Q 024731 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG------------------------SIDIKGLDSLGNLEELDMSDN 190 (263)
Q Consensus 135 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------------------~~p~~~~~~l~~L~~L~L~~n 190 (263)
+|+|++|.+++..+..|..+++|++|++++|.+.. .++...+..+++|++|++++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 77777777765555556666777777777666552 222223555666666666666
Q ss_pred CCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 191 AINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 191 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
.+++ +| . +..+++|++|++++|++++.. +..+..+++|++|++++|++++..|. .+.++++|+
T Consensus 207 ~l~~-~~-~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 269 (452)
T 3zyi_A 207 NIKD-MP-N-LTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLV 269 (452)
T ss_dssp CCSS-CC-C-CTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCC
T ss_pred cccc-cc-c-ccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCcCceECHH-HhcCCCCCC
Confidence 6665 33 2 666777777788888777655 77788888888888888888765554 454444443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=7.1e-22 Score=174.12 Aligned_cols=181 Identities=23% Similarity=0.271 Sum_probs=145.1
Q ss_pred CCCCCCCc--eEEcCC--------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccC
Q 024731 59 SDCCQWER--VECNDT--------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128 (263)
Q Consensus 59 ~~~c~w~g--v~c~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 128 (263)
...|.|.+ +.|... ..+++.+++++|.+.. +.+..+..+++|++|++++|.+.+.++.. .+.
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~ 76 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-----LNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFR 76 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE-----ECTTTTSSCTTCCEEECCCCSTTCEECTT---TTT
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc-----CChhHhccCccccEEECcCCcccceECcc---ccc
Confidence 34565544 777652 2568999999998853 34567899999999999999998666542 488
Q ss_pred CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCC
Q 024731 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKELHNFTNL 207 (263)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 207 (263)
.+++|++|++++|.+++..|..++++++|++|++++|.+++..+. ..+..+++|++|++++|.+++..|...+.++++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999999999988899999999999999999999875543 1388999999999999999986665547899999
Q ss_pred cEEEcCCCCCCcccchhhhhcC----------------------------------CCCCEEEecCcccccccCc
Q 024731 208 EELILDDSDLHISQLLQSIASF----------------------------------TSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~l~~l----------------------------------~~L~~L~l~~n~l~~~~p~ 248 (263)
++|++++|++++.. +..+..+ ++|++|++++|.+++.+|.
T Consensus 157 ~~L~L~~n~l~~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 157 HVLDLTFNKVKSIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp CEEECTTCCBSCCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred cEEeCCCCcccccC-hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 99999999998765 6555543 6788888888888776654
No 24
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=6.2e-21 Score=152.54 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=127.3
Q ss_pred EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (263)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 157 (263)
.++++++.+...+ . .+ ...+++|++++|.+++..+.. .+..+++|++|++++|.+++..+..|.++++|
T Consensus 15 ~l~~s~n~l~~iP-----~-~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 15 TVDCSNQKLNKIP-----E-HI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp EEECCSSCCSSCC-----S-CC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EeEeCCCCcccCc-----c-CC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 4666666664322 1 12 235689999999998775542 36789999999999999997777789999999
Q ss_pred CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237 (263)
Q Consensus 158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 237 (263)
++|++++|.+++..+. .+..+++|++|++++|.+++..+.. +..+++|++|++++|++++.. |..+..+++|++|++
T Consensus 84 ~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 84 NEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL 160 (220)
T ss_dssp CEEECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCccCHh-HhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence 9999999999865443 7899999999999999999855554 889999999999999999776 888999999999999
Q ss_pred cCcccccccCc
Q 024731 238 GFCTLTGALHG 248 (263)
Q Consensus 238 ~~n~l~~~~p~ 248 (263)
++|++++..+.
T Consensus 161 ~~N~l~c~c~l 171 (220)
T 2v70_A 161 LANPFNCNCYL 171 (220)
T ss_dssp CSCCEECSGGG
T ss_pred cCcCCcCCCch
Confidence 99999876553
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=172.45 Aligned_cols=180 Identities=23% Similarity=0.302 Sum_probs=138.6
Q ss_pred CCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCC
Q 024731 63 QWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNL 133 (263)
Q Consensus 63 ~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L 133 (263)
.|..|.|... ...++.|++++|.+.. +.+..|..+++|++|++++|.+++..|.. |.++++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L 82 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----LNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNL 82 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----ECHhHccCCCCCCEEECCCCccCEeChhh----hhCCccC
Confidence 3567777641 2467899999998864 33456888999999999999988776653 7888999
Q ss_pred CEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcC
Q 024731 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD 213 (263)
Q Consensus 134 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 213 (263)
++|+|++|.+++..+..|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+. .+..+++|++|+++
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLE 160 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEE
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChh-hccCCCCCCEEECC
Confidence 9999999998865556788889999999999988765555 788888999999999888875444 38888888888888
Q ss_pred CCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731 214 DSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS 255 (263)
Q Consensus 214 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~ 255 (263)
+|++++.. +..+..+++|+.|++++|.+++..+. .+.+++
T Consensus 161 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~ 200 (477)
T 2id5_A 161 KCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDY-SFKRLY 200 (477)
T ss_dssp SCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTT-CSCSCT
T ss_pred CCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChh-hcccCc
Confidence 88887655 66788888888888888888764443 444433
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.4e-20 Score=155.04 Aligned_cols=162 Identities=25% Similarity=0.299 Sum_probs=140.1
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..|..
T Consensus 61 ~~L~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQT-----LPAGIFKELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp TTCCEEECCSSCCSC-----CCTTTTSSCTTCCEEECCSSCCCCCCTTT----TTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCccCe-----eChhhhcCCCCCCEEECCCCcCCcCCHhH----cccccCCCEEECCCCccCeeCHHHhCc
Confidence 478999999998853 44566789999999999999998776643 788999999999999999877888999
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+.+ +|...+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|+
T Consensus 132 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 208 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLK 208 (270)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCC
T ss_pred CcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCC
Confidence 9999999999999885 454368999999999999999998 45545889999999999999998655 66789999999
Q ss_pred EEEecCcccccccC
Q 024731 234 YLSMGFCTLTGALH 247 (263)
Q Consensus 234 ~L~l~~n~l~~~~p 247 (263)
.|++++|++....+
T Consensus 209 ~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 209 MLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCBCCSSS
T ss_pred EEEecCCCeeCCCc
Confidence 99999999986654
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=4.4e-22 Score=179.44 Aligned_cols=170 Identities=24% Similarity=0.296 Sum_probs=132.6
Q ss_pred CCCCCceEEcCC-----------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCC
Q 024731 61 CCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129 (263)
Q Consensus 61 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 129 (263)
.|.|.|+ |+.. ..+++.+++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----IGHGDLRACANLQVLILKSSRINTIEGDA----FYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----ECSSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc-----cChhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence 4778887 7531 2478999999998853 33456889999999999999998776653 889
Q ss_pred CCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCC-CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE 208 (263)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 208 (263)
+++|++|++++|.+++..|..++++++|++|++++|.+.+ ..|. .+..+++|++|++++|.+.+.++...+..+++|+
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 9999999999999998777779999999999999999875 3454 7889999999999999865556655588899999
Q ss_pred EEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731 209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 242 (263)
+|++++|.+++.. |..++.+++|++|++++|.+
T Consensus 152 ~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 152 ELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp EEEEEETTCCEEC-TTTTTTCSEEEEEEEECSBS
T ss_pred eeeccCCcccccC-hhhhhccccCceEecccCcc
Confidence 9999999988765 66666555444444444443
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.2e-20 Score=145.72 Aligned_cols=157 Identities=21% Similarity=0.214 Sum_probs=130.6
Q ss_pred EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+.++.+++++.... . .-.+++++|++++|.+++..+.. +..+++|++|++++|++++..+..|..+++
T Consensus 10 ~~v~c~~~~l~~~p-----~---~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-----T---GIPAQTTYLDLETNSLKSLPNGV----FDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77 (208)
T ss_dssp TEEECCSSCCSSCC-----S---CCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecCCCccCCC-----C---CCCCCCcEEEcCCCccCcCChhh----hcccccCcEEECCCCccCccChhhcCCCCC
Confidence 36778877764322 1 22468999999999998766543 789999999999999999766667899999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEE
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS 236 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~ 236 (263)
|++|++++|.+++ ++...+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|++|+
T Consensus 78 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 78 LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIW 154 (208)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEE
T ss_pred cCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEE
Confidence 9999999999985 444368899999999999999998 45545889999999999999999655 66789999999999
Q ss_pred ecCcccccccCc
Q 024731 237 MGFCTLTGALHG 248 (263)
Q Consensus 237 l~~n~l~~~~p~ 248 (263)
+++|.+.+..|.
T Consensus 155 l~~N~~~~~~~~ 166 (208)
T 2o6s_A 155 LHDNPWDCTCPG 166 (208)
T ss_dssp CCSCCBCCCTTT
T ss_pred ecCCCeecCCCC
Confidence 999999987664
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.7e-21 Score=163.16 Aligned_cols=162 Identities=22% Similarity=0.249 Sum_probs=96.6
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
+++.+++++|.+... +..+..+++|++|++++|.+++..+. ..+..+++|++|++++|.+++..+..+..+
T Consensus 79 ~L~~L~Ls~n~i~~l------~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 79 SLKYLDLSFNGVITM------SSNFLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp CCCEEECCSCSEEEE------EEEEETCTTCCEEECTTSEEESSTTT---TTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccCEEECCCCccccC------hhhcCCCCCCCEEECCCCcccccccc---hhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 455566666554321 12355667777777777776655431 125666667777777666665556666666
Q ss_pred CCCCEEEcCCCcCCC-CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 155 SSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
++|++|++++|.+.+ .+|. .+..+++|++|++++|.+++..+.. +..+++|++|++++|++++.. +..+..+++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 226 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQ 226 (306)
T ss_dssp TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCC
T ss_pred cCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCCccCccC-hhhccCcccCC
Confidence 666666666666654 2444 5666666666666666666533333 666666666666666665443 44556666666
Q ss_pred EEEecCcccccccCc
Q 024731 234 YLSMGFCTLTGALHG 248 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~ 248 (263)
+|++++|++++..|.
T Consensus 227 ~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EEECTTSCCCBCSSS
T ss_pred EeECCCCCCcccCHH
Confidence 666666666655544
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4.8e-21 Score=168.99 Aligned_cols=170 Identities=21% Similarity=0.267 Sum_probs=125.2
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc-------
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS------- 146 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~------- 146 (263)
.+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.++..
T Consensus 99 ~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 169 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQ-----IEVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLSKLRELWLRNNPIESIPSYAFNR 169 (452)
T ss_dssp TTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCCCccCC-----cChhhccCcccCCEEECCCCcCCccChhh----hcccCCCCEEECCCCCcceeCHhHHhc
Confidence 457778888887753 23345666677777777777666544432 55556666666666655522
Q ss_pred -----------------cc-ccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731 147 -----------------IF-SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE 208 (263)
Q Consensus 147 -----------------~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 208 (263)
++ ..|.++++|++|++++|.+++ +| .+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 245 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP--NLTPLVGLEELEMSGNHFPEIRPG-SFHGLSSLK 245 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC--CCTTCTTCCEEECTTSCCSEECGG-GGTTCTTCC
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc--cccccccccEEECcCCcCcccCcc-cccCccCCC
Confidence 22 246778889999999999874 55 688999999999999999995555 499999999
Q ss_pred EEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
.|++++|++++.. +..+..+++|++|++++|++++ +|...+..+++|.
T Consensus 246 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 246 KLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLV 293 (452)
T ss_dssp EEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCC
T ss_pred EEEeCCCcCceEC-HHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCC
Confidence 9999999999776 8889999999999999999995 4543455554443
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=168.52 Aligned_cols=171 Identities=23% Similarity=0.278 Sum_probs=123.6
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc--------
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-------- 145 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-------- 145 (263)
.+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.++.
T Consensus 88 ~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 88 RHLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLTTIPNGA----FVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp SSCCEEECCSSCCCE-----ECGGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCCCcCCc-----cChhhccCCccCCEEECCCCcCCeeCHhH----hhccccCceeeCCCCcccccCHHHhhh
Confidence 356777888777643 22344566666666666666666544322 4455555555555554442
Q ss_pred ----------------cc-cccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731 146 ----------------SI-FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE 208 (263)
Q Consensus 146 ----------------~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 208 (263)
.+ +..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 234 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQ 234 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTT-TTTTCTTCC
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChh-hhccCccCC
Confidence 22 235777889999999999987 566 588999999999999999985555 499999999
Q ss_pred EEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHHH
Q 024731 209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFM 259 (263)
Q Consensus 209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~~ 259 (263)
.|++++|++++.. +..+..+++|++|++++|++++ +|...+..+++|+.
T Consensus 235 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 235 KLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLER 283 (440)
T ss_dssp EEECTTCCCCEEC-TTSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCE
T ss_pred EEECCCCceeEEC-hhhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCE
Confidence 9999999999766 8889999999999999999995 44435555554443
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=2.8e-20 Score=148.69 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=117.2
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 182 (263)
++++.|++++|.+++..+.. +..+++|++|+|++|.+++..|..|.++++|++|++++|.++ .+|...+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCC
Confidence 57899999999998766543 888999999999999999877889999999999999999988 4555467889999
Q ss_pred CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
++|+|++|.+++..+. .+..+++|++|++++|++++.. +..+..+++|++|++++|++...
T Consensus 107 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 107 QLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCCC
Confidence 9999999999985444 4889999999999999998665 67789999999999999998753
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=2.7e-20 Score=153.64 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=112.4
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.+++++|.+.. +.+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+.+
T Consensus 28 ~~l~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCE-----ECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCcccc-----cCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcC
Confidence 358899999998854 23446788899999999999888665543 788899999999999998777778888
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC-CchhhhcCCCCCcEEEcCCCCCCcccchhhhhcC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQLLQSIASF 229 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l 229 (263)
+++|++|++++|.+.+..+. .+..+++|++|++++|.+++. +|.. +..+++|++|++++|++++.. +..+..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l 172 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-CTDLRVL 172 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred CccccEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC-HHHhhhh
Confidence 99999999999988765443 688888999999999988773 3554 888889999999998887544 4444433
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=5.9e-21 Score=174.02 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=45.3
Q ss_pred cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (263)
.|..+++|++|++++|.+++.++.. +..+++|++|+|++|.+++..+..|+++++|++|++++|.+.+..|. .+.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 168 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQ 168 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhh
Confidence 3444455555555555554444332 44555555555555555533333345555555555555555443333 455
Q ss_pred CCCCCCEEEcCCCCCCC
Q 024731 178 SLGNLEELDMSDNAINN 194 (263)
Q Consensus 178 ~l~~L~~L~L~~n~l~~ 194 (263)
.+++|++|++++|.+++
T Consensus 169 ~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 169 ATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TCTTCCEEECTTSCCSB
T ss_pred cCCcCcEEECcCCCCCC
Confidence 55555555555555443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=4.6e-21 Score=165.88 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=56.4
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.++.++++++.+.. ++...+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..++++
T Consensus 46 ~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 46 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 34455555554432 22223444445555555555444333321 4444444444444444444334444444
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL 217 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 217 (263)
++|++|++++|.+. .+|...+..+++|++|++++|.+.+..+. .+..+++|++|++++|++
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcC
Confidence 44444444444443 23321234444444444444444432221 234444444444444433
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=2.8e-20 Score=169.63 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=134.1
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
..+++.+++++|.+.. +.+..|..+++|++|++++|.+++..|.. |.++++|++|++++|.+++..|..|+
T Consensus 31 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKI-----LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCcCEEECCCCCcCE-----eChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcC
Confidence 3578999999998853 34556889999999999999998776653 88999999999999999988899999
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC-CCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-LVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 231 (263)
++++|++|++++|.+.+..+. .++.+++|++|++++|.+.+ .+|.. ++++++|++|++++|++++.. +..++.+++
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~ 178 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT-VNDLQFLRE 178 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC-TTTTHHHHH
T ss_pred CcccCCEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC-hhhhhhhhc
Confidence 999999999999998865545 79999999999999999986 35665 999999999999999998765 666666555
Q ss_pred CC----EEEecCcccccc
Q 024731 232 LK----YLSMGFCTLTGA 245 (263)
Q Consensus 232 L~----~L~l~~n~l~~~ 245 (263)
|+ ++++++|.+++.
T Consensus 179 L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp CTTCCCEEECTTCCCCEE
T ss_pred cccccceeeccCCCccee
Confidence 44 788888888743
No 37
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=2.5e-20 Score=159.87 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=126.5
Q ss_pred CCCCceEEcCC---------CCcEEEEecCCCCCcccccccccccccc-CCcCCcEEEccCcccCCCCCcccccccCCCC
Q 024731 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (263)
Q Consensus 62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~ 131 (263)
|.+..+.|... ...++.|++++|.+.. +.+..+. .+++|++|++++|.+++..+.. |..++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~ 88 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----LRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVP 88 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----ECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----cChhhhhhcccccCEEECCCCcCCccChhh----ccCCC
Confidence 66777777641 2346778888888753 2344455 7888888888888887766543 77888
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhh---cCCCCCc
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL---HNFTNLE 208 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~ 208 (263)
+|++|+|++|++++..+..|.++++|++|+|++|.+.+..|. .+..+++|++|+|++|.+++ +|...+ ..+++|+
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM 166 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCC
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCC
Confidence 888888888888866666788888888888888888754454 78888888888888888887 555534 5678888
Q ss_pred EEEcCCCCCCcccchhhhhcCCC--CCEEEecCccccc
Q 024731 209 ELILDDSDLHISQLLQSIASFTS--LKYLSMGFCTLTG 244 (263)
Q Consensus 209 ~L~l~~n~l~~~~~~~~l~~l~~--L~~L~l~~n~l~~ 244 (263)
+|++++|++++.. +..+..++. ++.|++++|++..
T Consensus 167 ~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 167 LLDLSSNKLKKLP-LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCCCCC-HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EEECCCCCCCccC-HHHhhhccHhhcceEEecCCCccC
Confidence 8888888887544 567777776 4788888888764
No 38
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=3.8e-20 Score=145.38 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=126.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.++++++.+... . .+..+++|++|++++|.++... .+..+++|++|++++|.+++..+..++.
T Consensus 44 ~~L~~L~l~~n~i~~l-----~--~l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTDL-----T--GIEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSCCSCC-----T--TGGGCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred CCccEEeccCCCccCh-----H--HHhcCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 3578899999987531 1 4788999999999999775432 2889999999999999999888999999
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCC-CCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
+++|++|++++|.+++..+. .+..+++|++|++++|. ++. ++ . +..+++|++|++++|++++ . + .+..+++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~-~-l~~l~~L~~L~l~~n~i~~-~-~-~l~~l~~L 183 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM-P-LKTLPELKSLNIQFDGVHD-Y-R-GIEDFPKL 183 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG-G-GGGCSSCCEEECTTBCCCC-C-T-TGGGCSSC
T ss_pred CCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH-h-hcCCCCCCEEECCCCCCcC-h-H-HhccCCCC
Confidence 99999999999999876666 89999999999999998 655 54 3 8999999999999999985 3 3 78899999
Q ss_pred CEEEecCccccc
Q 024731 233 KYLSMGFCTLTG 244 (263)
Q Consensus 233 ~~L~l~~n~l~~ 244 (263)
++|++++|++.+
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999999864
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=3.1e-20 Score=169.48 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=110.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.|||++|.+.. +.+..|..+++|++|+|++|.+++..+.. |.++++|++|+|++|++++..+..|.+
T Consensus 52 ~~~~~LdLs~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 356778888877753 34456777788888888888777655543 677778888888888877655566777
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC-
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL- 232 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L- 232 (263)
+++|++|++++|++++ +|...++.+++|++|++++|.+++...+..+..+++|++|++++|++++.. +..+..++++
T Consensus 123 L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~ 200 (635)
T 4g8a_A 123 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMP 200 (635)
T ss_dssp CTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCT
T ss_pred CCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhh
Confidence 8888888888887774 333367777888888888887765322333677778888888888777554 5555544333
Q ss_pred ---CEEEecCcccccc
Q 024731 233 ---KYLSMGFCTLTGA 245 (263)
Q Consensus 233 ---~~L~l~~n~l~~~ 245 (263)
..++++.|.++..
T Consensus 201 ~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFI 216 (635)
T ss_dssp TCCCEEECTTCCCCEE
T ss_pred hhhhhhhcccCccccc
Confidence 3677777777643
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.3e-20 Score=168.62 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=128.0
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 182 (263)
+++++|+|++|.|++..+.. |.++++|++|+|++|++++..+..|.++++|++|+|++|++++ +|...|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence 37999999999999876653 8999999999999999997777889999999999999999884 565589999999
Q ss_pred CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
++|++++|++++ +++..++++++|++|++++|.+++...|..++.+++|++|++++|++++..|. .+..++++
T Consensus 127 ~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~l 199 (635)
T 4g8a_A 127 QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQM 199 (635)
T ss_dssp CEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTC
T ss_pred CEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-cccchhhh
Confidence 999999999998 55545899999999999999998654478899999999999999999976555 56555543
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=7.9e-20 Score=166.60 Aligned_cols=163 Identities=20% Similarity=0.190 Sum_probs=143.1
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
..++.+++++|.+.. +.+..|..+++|++|++++|.+.+..|.. |.++++|++|++++|.+++..|..|++
T Consensus 33 ~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT-----IQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTTCCCSE-----ECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccCCccCc-----CChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhcc
Confidence 478999999999863 44567899999999999999998877754 899999999999999999888999999
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+++..+. .+..+++|++|++++|.+.+...+. +..+++|++|++++|.+++.. +..++.+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 180 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQAT 180 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCC
T ss_pred cccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccC-hhhhhhhcccc
Confidence 99999999999999864454 7899999999999999999843343 556999999999999999766 88899999999
Q ss_pred --EEEecCcccccccCc
Q 024731 234 --YLSMGFCTLTGALHG 248 (263)
Q Consensus 234 --~L~l~~n~l~~~~p~ 248 (263)
+|++++|.+++..|.
T Consensus 181 ~l~L~l~~n~l~~~~~~ 197 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPG 197 (606)
T ss_dssp SEEEECTTCCCCEECTT
T ss_pred eeEEecCCCccCccChh
Confidence 999999999987665
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=5.1e-20 Score=156.01 Aligned_cols=173 Identities=25% Similarity=0.396 Sum_probs=99.1
Q ss_pred CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132 (263)
Q Consensus 62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 132 (263)
|.|..+.|... ...++.+++++|.+.. +.+..+..+++|++|++++|.+++..+.. +..+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----cCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence 78999998742 2368899999998753 33445777788888888888777655543 666677
Q ss_pred CCEEEccCCcCCccccc----------------------cCCCCCCCCEEEcCCCcCCC--CcCccccCCC---------
Q 024731 133 LKFLYLDYNHFNNSIFS----------------------SLGGLSSLRNLSLIGNRLIG--SIDIKGLDSL--------- 179 (263)
Q Consensus 133 L~~L~Ls~n~l~~~~p~----------------------~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l--------- 179 (263)
|++|++++|.++ .+|. .+.++++|++|++++|.+.. ..+. .+..+
T Consensus 104 L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~L~~L~l~~ 181 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLNYLRISE 181 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSCCCSCCBCCS
T ss_pred CCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCCccCEEECcC
Confidence 777777666665 3333 34555555555555555431 1111 11111
Q ss_pred -----------CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 180 -----------GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 180 -----------~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++|++|++++|.+++..+. .+..+++|++|++++|++++.. +..+..+++|++|++++|+++ .+|.
T Consensus 182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 182 AKLTGIPKDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp SBCSSCCSSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CCCCccCccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 2333333333333332212 2555566666666666665443 445666666666666666665 4555
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=5.8e-20 Score=155.49 Aligned_cols=170 Identities=23% Similarity=0.332 Sum_probs=101.3
Q ss_pred CCCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCC
Q 024731 61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (263)
Q Consensus 61 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~ 131 (263)
.|.|..+.|... ...++.+++++|.+.. +.+..|..+++|++|++++|.+++..|.. +..++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----eChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCC
Confidence 468999998741 2467889999998864 33446788899999999999888776653 77778
Q ss_pred CCCEEEccCCcCCccccc----------------------cCCCCCCCCEEEcCCCcCCC--CcCccccCCCCCCCEEEc
Q 024731 132 NLKFLYLDYNHFNNSIFS----------------------SLGGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDM 187 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~----------------------~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L 187 (263)
+|++|++++|.++ .+|. .+.++++|++|++++|.+.. ..+. .+..+++|++|++
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l 178 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRI 178 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEEC
Confidence 8888888877776 3333 34555566666666665532 2222 4445555555555
Q ss_pred CCCCCCCCCch---------------------hhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731 188 SDNAINNLVIP---------------------KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 188 ~~n~l~~~~~~---------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
++|.++. +|. ..+..+++|++|++++|.+++.. +..+..+++|++|++++|+++
T Consensus 179 ~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 179 ADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCS
T ss_pred CCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCcCc
Confidence 5444433 221 12444444555555555544333 334445555555555555554
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.3e-20 Score=172.36 Aligned_cols=163 Identities=23% Similarity=0.254 Sum_probs=139.8
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+.. +.+..|..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..|++
T Consensus 25 ~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhcc
Confidence 578999999998863 34556899999999999999999887754 788999999999999999655557999
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhh--cCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIA--SFTS 231 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~--~l~~ 231 (263)
+++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++.. +..+. .+++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~ 172 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALK-SEELDIFANSS 172 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCE
T ss_pred CCCCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccC-HHHhhcccccc
Confidence 99999999999999865444 8999999999999999999865554 889999999999999998766 66654 5689
Q ss_pred CCEEEecCcccccccCc
Q 024731 232 LKYLSMGFCTLTGALHG 248 (263)
Q Consensus 232 L~~L~l~~n~l~~~~p~ 248 (263)
|++|++++|.+++..|.
T Consensus 173 L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPG 189 (680)
T ss_dssp ESEEECTTCCCCCBCTT
T ss_pred ccEEECCCCcccccChh
Confidence 99999999999976665
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.3e-19 Score=149.35 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=134.7
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
-.+++.+++++|.+..... ...+++|++|++++|.++.... .+..+++|++|++++|++++..+..|.
T Consensus 54 l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~l~~N~l~~l~~~~~~ 121 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV-------DGTLPVLGTLDLSHNQLQSLPL-----LGQTLPALTVLDVSFNRLTSLPLGALR 121 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC-------CSCCTTCCEEECCSSCCSSCCC-----CTTTCTTCCEEECCSSCCCCCCSSTTT
T ss_pred CCCCCEEECCCCccCcccC-------CCCCCcCCEEECCCCcCCcCch-----hhccCCCCCEEECCCCcCcccCHHHHc
Confidence 4578999999999864322 3688999999999999985433 278899999999999999977778899
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
++++|++|++++|++++ +|...+..+++|++|++++|+++. +|...+..+++|++|++++|+++ .+ |..+...++|
T Consensus 122 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~-~i-p~~~~~~~~L 197 (290)
T 1p9a_G 122 GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TI-PKGFFGSHLL 197 (290)
T ss_dssp TCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCCC
T ss_pred CCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC-cc-ChhhcccccC
Confidence 99999999999999985 454478899999999999999997 66665788999999999999998 55 7888888999
Q ss_pred CEEEecCcccccc
Q 024731 233 KYLSMGFCTLTGA 245 (263)
Q Consensus 233 ~~L~l~~n~l~~~ 245 (263)
+.+++++|++...
T Consensus 198 ~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 198 PFAFLHGNPWLCN 210 (290)
T ss_dssp SEEECCSCCBCCS
T ss_pred CeEEeCCCCccCc
Confidence 9999999998753
No 46
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=144.79 Aligned_cols=150 Identities=20% Similarity=0.288 Sum_probs=127.8
Q ss_pred CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132 (263)
Q Consensus 62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 132 (263)
|.|..+.|... ...++.+++++|.+.... ....|..+++|++|++++|.+++..+.. |..+++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~ 82 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASG 82 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCCCcCCEECHHH----hCCCCC
Confidence 67888888652 235678999999986421 2345789999999999999999876643 899999
Q ss_pred CCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEc
Q 024731 133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212 (263)
Q Consensus 133 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 212 (263)
|++|+|++|.+++..+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++..|.. +..+++|++|++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L 160 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNL 160 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEe
Confidence 99999999999988888899999999999999999976665 8999999999999999999955554 999999999999
Q ss_pred CCCCCCccc
Q 024731 213 DDSDLHISQ 221 (263)
Q Consensus 213 ~~n~l~~~~ 221 (263)
++|.+.+..
T Consensus 161 ~~N~l~c~c 169 (220)
T 2v70_A 161 LANPFNCNC 169 (220)
T ss_dssp CSCCEECSG
T ss_pred cCcCCcCCC
Confidence 999997654
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.5e-20 Score=161.99 Aligned_cols=139 Identities=24% Similarity=0.213 Sum_probs=122.8
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 182 (263)
++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..|. .+..+++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV----FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR-MFENLDKL 349 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GGTTCTTC
T ss_pred cCceEEEecCccccccchhh----cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-HhcCcccC
Confidence 58999999999998777654 88999999999999999988888999999999999999999765554 88999999
Q ss_pred CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++|++++|.+++..+.. +..+++|++|++++|++++.. +..+..+++|++|++++|++++.+|.
T Consensus 350 ~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCcccccChhh-ccccccccEEECCCCccccCC-HhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999998855554 999999999999999998654 66788999999999999999998885
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6.1e-21 Score=154.34 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=93.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcc-cCCCCCcccccccCCCCCCCEEEccC-CcCCccccccC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSL 151 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l 151 (263)
..++.+++++|.+.. +.+..|..+++|++|++++|. +++..+.. +..+++|++|++++ |.+++..+..|
T Consensus 31 ~~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 357777887777653 223345666666666666665 54433322 45555666666665 55554434455
Q ss_pred CCCCCCCEEEcCCCcCCC-------------------------CcCccccCCCCCCC-EEEcCCCCCCCCCchhhhcCCC
Q 024731 152 GGLSSLRNLSLIGNRLIG-------------------------SIDIKGLDSLGNLE-ELDMSDNAINNLVIPKELHNFT 205 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~-------------------------~~p~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~ 205 (263)
.++++|++|++++|.+++ .+|...+..+++|+ +|++++|.++. ++...+.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-C
Confidence 555555555555554442 22222455555666 66666666653 44432333 5
Q ss_pred CCcEEEcCCCC-CCcccchhhhhcC-CCCCEEEecCcccccccCccchhcHHH
Q 024731 206 NLEELILDDSD-LHISQLLQSIASF-TSLKYLSMGFCTLTGALHGQGKLRVSE 256 (263)
Q Consensus 206 ~L~~L~l~~n~-l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~l~~L~~ 256 (263)
+|++|++++|+ +++.. +..+..+ ++|++|++++|+++ .+|...+.+|++
T Consensus 180 ~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~ 230 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230 (239)
T ss_dssp EEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSE
T ss_pred CCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCccc-cCChhHhccCce
Confidence 66666666663 55333 4556666 66777777777776 344434444443
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.9e-19 Score=143.85 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=126.7
Q ss_pred CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132 (263)
Q Consensus 62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 132 (263)
|.|..+.|... ...++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |..+++
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~ 81 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRS 81 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcC
Confidence 78899999752 2368999999999863 34557899999999999999999876654 899999
Q ss_pred CCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEc
Q 024731 133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212 (263)
Q Consensus 133 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l 212 (263)
|++|+|++|.++...+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEe
Confidence 99999999999966666789999999999999999876665 899999999999999999984 4445899999999999
Q ss_pred CCCCCCcc
Q 024731 213 DDSDLHIS 220 (263)
Q Consensus 213 ~~n~l~~~ 220 (263)
++|++...
T Consensus 160 ~~N~~~c~ 167 (220)
T 2v9t_B 160 AQNPFICD 167 (220)
T ss_dssp CSSCEECS
T ss_pred CCCCcCCC
Confidence 99998643
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=173.48 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=143.7
Q ss_pred CCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC
Q 024731 62 CQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141 (263)
Q Consensus 62 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n 141 (263)
|.|..|.+ ...+++.||+++|.+.. +.+..|..+++|++|++++|...+.+++ ..+.++++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCC
Confidence 56777766 45789999999999853 3456789999999999999977666533 24899999999999999
Q ss_pred cCCccccccCCCCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 142 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
.+++..|..|+++++|++|++++|.+.+.+|. ..+..+++|++|++++|.+++..+...++++++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99988899999999999999999999876654 13889999999999999998865544589999999999999999876
Q ss_pred cchhhhhcC--CCCCEEEecCcccccccCc
Q 024731 221 QLLQSIASF--TSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 221 ~~~~~l~~l--~~L~~L~l~~n~l~~~~p~ 248 (263)
. +..+..+ ++|+.|++++|.+++..|.
T Consensus 164 ~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 164 C-EHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp C-SGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred C-HHHcccccCCccceEECCCCcccccccc
Confidence 6 6767665 6677777777777665554
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=3.5e-19 Score=162.30 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=139.6
Q ss_pred EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (263)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 157 (263)
.++.+++++...+. . + .+++++|++++|.+++..+.. +.++++|++|++++|.+++..|..|.++++|
T Consensus 15 ~~~c~~~~l~~ip~-----~-~--~~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD-----D-I--PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp EEECTTSCCSSCCT-----T-S--CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ceEccCCCcccCCC-----C-C--CCCcCEEECCCCCcCEeChhh----ccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence 46667766653221 1 2 278999999999998877653 8999999999999999998888899999999
Q ss_pred CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237 (263)
Q Consensus 158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 237 (263)
++|++++|.+++..|. .+.++++|++|++++|.+++..+.. ++++++|++|++++|.+++..+|..++++++|++|++
T Consensus 83 ~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp CEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred CEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 9999999999876676 8999999999999999999854344 9999999999999999986333899999999999999
Q ss_pred cCcccccccCccchhcHHHHH
Q 024731 238 GFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 238 ~~n~l~~~~p~~~l~~L~~L~ 258 (263)
++|++++..|. .+..+++|.
T Consensus 161 s~n~l~~~~~~-~~~~l~~L~ 180 (606)
T 3vq2_A 161 SYNYIQTITVN-DLQFLRENP 180 (606)
T ss_dssp CSSCCCEECTT-TTHHHHHCT
T ss_pred cCCcceecChh-hhhhhhccc
Confidence 99999976565 677776654
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=1e-19 Score=165.87 Aligned_cols=162 Identities=25% Similarity=0.316 Sum_probs=107.5
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.++.++++++.+.. +.+..|..+++|++|++++|.++.. |.. +..+++|++|++++|.+++..|..+..+
T Consensus 255 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~l-p~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLSEL-PSG----LVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSS-----CCTTTTTTCTTCSEEECTTSCCSCC-CSS----CCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCc-----cCHHHhccccCCCEEeccCCccCCC-Chh----hcccccCCEEECccCCcCcCchhhhhcc
Confidence 67888888887753 3345577788888888888887743 332 6777788888888888776666677777
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCC--chhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.. +.. +..+++|++|++++|++.+.. +..+..+++|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 402 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLK-TEAFKECPQL 402 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCSCEEEC-TTTTTTCTTC
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cccCCCCCEEECCCCcCCcCC-HHHhcCCccC
Confidence 777777777777766666545666777777777777666532 222 566666666666666665444 5555666666
Q ss_pred CEEEecCcccccccCc
Q 024731 233 KYLSMGFCTLTGALHG 248 (263)
Q Consensus 233 ~~L~l~~n~l~~~~p~ 248 (263)
++|++++|.+++..|.
T Consensus 403 ~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp SEEECTTCCEECCTTC
T ss_pred CeEECCCCcCCCcccc
Confidence 6666666666554443
No 53
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=1.1e-20 Score=175.69 Aligned_cols=208 Identities=19% Similarity=0.127 Sum_probs=75.5
Q ss_pred CCcHHHHHHHHHHhhhCC-CCCCCCCCCcCCCCCCCCCCCCceEEcCCCCcEEEEecCCCCCccccc-------------
Q 024731 26 GCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAE------------- 91 (263)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~------------- 91 (263)
+..+.++++|++++.+.. ..+.....|. ......+.|.++.+. ..+++.+++.++.+...+.
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i 203 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVS--TPLTPKIELFANGKDEANQALLQHKKLSQYSI 203 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceec--CCccceEEeeCCCCCcchhhHhhcCccCcccc
Confidence 345667899999998876 3333455676 344556788888775 3567777777666542111
Q ss_pred ---------cccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEc
Q 024731 92 ---------WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162 (263)
Q Consensus 92 ---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 162 (263)
..+.+..+..++.|+.|+|++|.+....+. +..+++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCCGG-----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 001122334444455555555544422211 224444555555555554 44444444555555555
Q ss_pred CCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC-CCEEEecCcc
Q 024731 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCT 241 (263)
Q Consensus 163 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~-L~~L~l~~n~ 241 (263)
++|.++ .+|. .+..+++|++|+|++|.++. +|.. ++.+++|++|+|++|.+++.+ |..+..+.. +..+++++|.
T Consensus 278 s~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 278 SHNRLT-SLPA-ELGSCFQLKYFYFFDNMVTT-LPWE-FGNLCNLQFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp TTSCCS-SCCS-SGGGGTTCSEEECCSSCCCC-CCSS-TTSCTTCCCEECTTSCCCSHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred cCCcCC-ccCh-hhcCCCCCCEEECCCCCCCc-cChh-hhcCCCccEEeCCCCccCCCC-hHHHhhcchhhhHHhhccCc
Confidence 555544 3443 44444555555555554442 3433 444555555555555554443 443332211 1123444555
Q ss_pred cccccCc
Q 024731 242 LTGALHG 248 (263)
Q Consensus 242 l~~~~p~ 248 (263)
++|.+|.
T Consensus 353 l~~~~p~ 359 (727)
T 4b8c_D 353 PEIPLPH 359 (727)
T ss_dssp CCCCCCC
T ss_pred ccCcCcc
Confidence 5544444
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.2e-19 Score=163.65 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=92.2
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
.++.++++++.+.. +++..+..+++|++|++++|.+++..+.. +..+++|++|+|++|.+++..|..|+++
T Consensus 52 ~l~~l~l~~~~l~~-----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESSCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeCCCCCC-----cCHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 34556666665532 34455677777888888888777665543 6777788888888888877666677778
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCc
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHI 219 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 219 (263)
++|++|++++|.+++ +|...+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++
T Consensus 123 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 123 PLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSB
T ss_pred CCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCC
Confidence 888888888887763 4443567777888888888877774433 36777777777777776653
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=3.3e-19 Score=154.22 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=67.6
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.++++++.+.. +.+..|..+++|++|++++|.+++..+.. +..+++|++|++++|.++...+..|.+
T Consensus 69 ~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCCcccc-----cChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 357778888877643 23345666777777777777776655542 566666666666666666333333466
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN 194 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 194 (263)
+++|++|++++|.+.+..+. .+..+++|++|++++|.+++
T Consensus 140 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSB
T ss_pred CCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCc
Confidence 66666666666666543333 55566666666666665543
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2e-20 Score=151.21 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=100.5
Q ss_pred ccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCC---EEEccCC-cCCccccccCCCCCCCC-EEEcCCCcCCCCc
Q 024731 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK---FLYLDYN-HFNNSIFSSLGGLSSLR-NLSLIGNRLIGSI 171 (263)
Q Consensus 97 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~ 171 (263)
..|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++ .+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i 171 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV 171 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc
Confidence 345566666666666666655 232 55666666 8888888 88766566789999999 9999999988 67
Q ss_pred CccccCCCCCCCEEEcCCCC-CCCCCchhhhcCC-CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcc
Q 024731 172 DIKGLDSLGNLEELDMSDNA-INNLVIPKELHNF-TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 241 (263)
Q Consensus 172 p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 241 (263)
|...+.. ++|++|++++|. +++ +++..+..+ ++|+.|++++|++++ + |.. .+++|+.|+++++.
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~-l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA-L-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC-C-CCT--TCTTCSEEECTTC-
T ss_pred CHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCcccc-C-Chh--HhccCceeeccCcc
Confidence 7644544 899999999995 886 555558889 999999999999984 4 433 68899999998764
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=2.4e-19 Score=147.96 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=126.5
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 182 (263)
+++++|++++|.+++..+.. +..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+. .+..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTC
T ss_pred CCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccc
Confidence 47999999999998776643 88999999999999999977777899999999999999999865554 89999999
Q ss_pred CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
++|++++|.+.+..+. .+..+++|++|++++|.+++..+|..++.+++|++|++++|++++..+. .+..+++|.
T Consensus 103 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 176 (276)
T 2z62_A 103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMP 176 (276)
T ss_dssp CEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCT
T ss_pred cEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhhcc
Confidence 9999999999985433 3899999999999999998643388999999999999999999965444 565555443
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=158.24 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=130.5
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
-.+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+.. |..+++|++|++++|.+++..+..|.
T Consensus 55 l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 55 FPHLEELELNENIVSA-----VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCEEECCCCccCE-----eChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcc
Confidence 3478899999998753 33556889999999999999998766543 78899999999999999988888899
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
++++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ++...+..+++|+.|++++|.+.+.. +..+..+++|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L 202 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRL 202 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTC
T ss_pred ccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCccc
Confidence 999999999999998865554 78889999999999999887 45555888888888888888887654 5667777777
Q ss_pred CEEEecCcccccccCc
Q 024731 233 KYLSMGFCTLTGALHG 248 (263)
Q Consensus 233 ~~L~l~~n~l~~~~p~ 248 (263)
++|++++|.+.+.+|.
T Consensus 203 ~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 203 KVLEISHWPYLDTMTP 218 (477)
T ss_dssp CEEEEECCTTCCEECT
T ss_pred ceeeCCCCccccccCc
Confidence 7777766655555544
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=3.8e-19 Score=152.47 Aligned_cols=163 Identities=22% Similarity=0.189 Sum_probs=130.6
Q ss_pred EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccC-CCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
.++++++++.... .. + .+.++.|++++|.+++..+.. +. .+++|++|+|++|++++..+..|.++++
T Consensus 22 ~l~c~~~~l~~iP-----~~-~--~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 22 ILSCSKQQLPNVP-----QS-L--PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp EEECCSSCCSSCC-----SS-C--CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred EEEeCCCCcCccC-----cc-C--CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 6889998875432 11 2 246899999999998876653 66 8999999999999999777788999999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhh---hcCCCCC
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI---ASFTSLK 233 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l---~~l~~L~ 233 (263)
|++|+|++|++.+ ++...+..+++|++|+|++|.+++..+. .+..+++|++|++++|++++.. +..+ ..+++|+
T Consensus 90 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLM 166 (361)
T ss_dssp CCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCC
T ss_pred CCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCC
Confidence 9999999999985 4444789999999999999999985444 4999999999999999998643 4445 6799999
Q ss_pred EEEecCcccccccCccchhcHHH
Q 024731 234 YLSMGFCTLTGALHGQGKLRVSE 256 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~~~l~~L~~ 256 (263)
.|++++|+++ .+|...+..+..
T Consensus 167 ~L~L~~N~l~-~l~~~~~~~l~~ 188 (361)
T 2xot_A 167 LLDLSSNKLK-KLPLTDLQKLPA 188 (361)
T ss_dssp EEECCSSCCC-CCCHHHHHHSCH
T ss_pred EEECCCCCCC-ccCHHHhhhccH
Confidence 9999999999 466434444433
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=159.78 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=140.7
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
..+++.+++++|.+.. +.+..|..+++|++|++++|.+++..+.. |.++++|++|++++|.+++..|..|+
T Consensus 27 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp CSSCCEEECCSCCCCE-----ECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccccEEEccCCccCc-----cChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3468899999999864 33456899999999999999998766653 88999999999999999987788999
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC-CchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 231 (263)
++++|++|++++|.+.+. +...++.+++|++|++++|.+++. +|.. ++++++|++|++++|++++.. +..++.+++
T Consensus 98 ~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 174 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQ 174 (570)
T ss_dssp TCTTCCEEECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEEC-GGGGHHHHT
T ss_pred CccccccccccccccccC-CCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceec-HHHccchhc
Confidence 999999999999998854 433689999999999999999873 4665 999999999999999998765 778888888
Q ss_pred C----CEEEecCcccccccCc
Q 024731 232 L----KYLSMGFCTLTGALHG 248 (263)
Q Consensus 232 L----~~L~l~~n~l~~~~p~ 248 (263)
| +.+++++|.+++..|.
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTT
T ss_pred cchhhhhcccCCCCceecCHH
Confidence 8 8999999999976554
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.5e-20 Score=156.56 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=85.4
Q ss_pred cEEEEecCCCCCccccccccccccc--cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLF--TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
+++++++++|.+.... +..+ ..+++|++|++++|.+++..+......+..+++|++|++++|.+++..+..++
T Consensus 92 ~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 3677777777764322 2223 56667777777777776544421111234566667777777766655556666
Q ss_pred CCCCCCEEEcCCCcCCCC--c-CccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCcccchhhh
Q 024731 153 GLSSLRNLSLIGNRLIGS--I-DIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHISQLLQSI 226 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~--~-p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l 226 (263)
.+++|++|++++|++.+. + +...+..+++|++|++++|.++. ++. ..++.+++|++|++++|++++.. |..+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~ 244 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSA 244 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhH
Confidence 666677777766665431 1 11122345555555555555543 111 01234455555555555555443 3334
Q ss_pred hcC---CCCCEEEecCcccc
Q 024731 227 ASF---TSLKYLSMGFCTLT 243 (263)
Q Consensus 227 ~~l---~~L~~L~l~~n~l~ 243 (263)
..+ ++|++|++++|+++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC
T ss_pred HhccCcCcCCEEECCCCCCC
Confidence 333 35555555555554
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=161.54 Aligned_cols=144 Identities=23% Similarity=0.253 Sum_probs=125.2
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC-CCcCccccC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI-GSIDIKGLD 177 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~ 177 (263)
+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+++..|..+.++++|++|++++|.+. +.+|. .+.
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~ 467 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFT 467 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCT
T ss_pred ccccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-hhh
Confidence 677888888888888887765532 3788999999999999999888889999999999999999987 46776 889
Q ss_pred CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
.+++|++|++++|.+++..|.. +..+++|++|++++|++++.. +..+..+++|++|++++|++++.+|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEECCCCccccCChhh-hhcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999855554 899999999999999998766 77889999999999999999998886
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=161.46 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=67.5
Q ss_pred cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc--cccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (263)
Q Consensus 100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (263)
..+++|++|++++|.+++..|.. +..+++|++|++++|++++ .+|..++.+++|++|++++|.+.+.+|...+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 44555555555555555544432 4555555555555555553 33444555555555555555555434442344
Q ss_pred CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731 178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
.+++|++|++++|.+++..+.. +. ++|++|++++|+++ .+ |..+..+++|++|++++|+++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~-~i-p~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIK-SI-PKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCC-CC-CGGGGGCTTCCEEECCSSCCC
T ss_pred cCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCccc-cc-chhhhcCCCCCEEECCCCcCC
Confidence 4555555555555554433222 21 34555555555554 33 444444555555555555554
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=7.8e-19 Score=147.33 Aligned_cols=148 Identities=25% Similarity=0.387 Sum_probs=88.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+.... + +..+++|++|++++|.+++. + .+..+++|++|++++|.+++ ++. +..
T Consensus 63 ~~L~~L~L~~n~i~~~~-----~--~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~-~~~-l~~ 127 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLA-----P--LKNLTKITELELSGNPLKNV-S-----AIAGLQSIKTLDLTSTQITD-VTP-LAG 127 (308)
T ss_dssp TTCCEEECCSSCCCCCG-----G--GTTCCSCCEEECCSCCCSCC-G-----GGTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred CCCCEEEccCCcCCCCh-----h--HccCCCCCEEEccCCcCCCc-h-----hhcCCCCCCEEECCCCCCCC-chh-hcC
Confidence 35667777777664321 1 56667777777777776653 2 15666667777777776664 232 666
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++.. + +..+++|+
T Consensus 128 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~-~--l~~l~~L~ 198 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITN-IS--PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDIS-P--LASLPNLI 198 (308)
T ss_dssp CTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-G--GGGCTTCC
T ss_pred CCCCCEEECCCCccCc-Cc--cccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccCcCh-h--hcCCCCCC
Confidence 6666666666666653 22 25566666666666666665 222 556666666666666665322 2 55666666
Q ss_pred EEEecCcccccc
Q 024731 234 YLSMGFCTLTGA 245 (263)
Q Consensus 234 ~L~l~~n~l~~~ 245 (263)
+|++++|++++.
T Consensus 199 ~L~L~~N~l~~~ 210 (308)
T 1h6u_A 199 EVHLKNNQISDV 210 (308)
T ss_dssp EEECTTSCCCBC
T ss_pred EEEccCCccCcc
Confidence 666666666643
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=8.7e-20 Score=153.36 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=15.9
Q ss_pred CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcC
Q 024731 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167 (263)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 167 (263)
++|++|++++|++++..|..++++++|++|++++|++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 3444444444444433334444444444444444443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.3e-19 Score=151.07 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=119.9
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC-CCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~~l 179 (263)
.+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~l 190 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVF 190 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCC
T ss_pred ccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--ccccc
Confidence 4678889999999888766543 6778999999999999997777766 4789999999999998754 4 34468
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc-cccCccchhcHHHHH
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT-GALHGQGKLRVSEAF 258 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~l~~L~~L~ 258 (263)
++|++|++++|.+++ +++. +..+++|++|++++|+++ .+ |..+..+++|+.|++++|+++ +.+|. .+..+++|+
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~L~~N~l~-~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~ 265 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLV-LI-EKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQ 265 (317)
T ss_dssp TTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCC-EE-CTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHH
T ss_pred ccCCEEECCCCcCCc-chhh-hcccCcccEEECcCCccc-ch-hhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccce
Confidence 999999999999988 5665 888999999999999998 45 778899999999999999998 55555 555555555
Q ss_pred HH
Q 024731 259 MI 260 (263)
Q Consensus 259 ~~ 260 (263)
.+
T Consensus 266 ~l 267 (317)
T 3o53_A 266 TV 267 (317)
T ss_dssp HH
T ss_pred EE
Confidence 43
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.3e-20 Score=156.95 Aligned_cols=144 Identities=20% Similarity=0.161 Sum_probs=117.7
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC-----CCCCEEEcCCCcCCCCcCccc
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRLIGSIDIKG 175 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~ 175 (263)
.+++|++|++++|.+++..|...+ +..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|. .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-Q 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-T
T ss_pred CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-H
Confidence 589999999999999988776411 28899999999999999976 7777766 9999999999999876555 8
Q ss_pred cCCCCCCCEEEcCCCCCCCCC--chh-hhcCCCCCcEEEcCCCCCCc--ccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 176 LDSLGNLEELDMSDNAINNLV--IPK-ELHNFTNLEELILDDSDLHI--SQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 176 ~~~l~~L~~L~L~~n~l~~~~--~~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+..+++|++|++++|.+.+.+ +.. .+..+++|++|++++|++++ ......+..+++|++|++++|++++.+|.
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 999999999999999987642 222 12788999999999999984 22124456789999999999999987654
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.2e-18 Score=145.00 Aligned_cols=147 Identities=25% Similarity=0.333 Sum_probs=104.3
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+.... + +..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..
T Consensus 68 ~~L~~L~L~~n~l~~~~-----~--l~~l~~L~~L~l~~n~l~~~-~~-----l~~l~~L~~L~L~~n~i~~~--~~l~~ 132 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIK-----P--LANLKNLGWLFLDENKVKDL-SS-----LKDLKKLKSLSLEHNGISDI--NGLVH 132 (291)
T ss_dssp TTCCEEECCSSCCCCCG-----G--GTTCTTCCEEECCSSCCCCG-GG-----GTTCTTCCEEECTTSCCCCC--GGGGG
T ss_pred CCCCEEEccCCccCCCc-----c--cccCCCCCEEECCCCcCCCC-hh-----hccCCCCCEEECCCCcCCCC--hhhcC
Confidence 45777777777764321 1 67777888888888877653 22 67777888888888887752 45677
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+++. . .+..+++|++|++++|.+++. ++ +..+++|++|++++|.+++ + + .+..+++|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~L~~N~i~~-l-~-~l~~l~~L~ 203 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSKNHISD-L-R-ALAGLKNLD 203 (291)
T ss_dssp CTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCB-C-G-GGTTCTTCS
T ss_pred CCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCccccc-hh--hcCCCccCEEECCCCcCCC-C-h-hhccCCCCC
Confidence 77888888888877643 2 677778888888888887773 32 6777888888888888764 3 3 377788888
Q ss_pred EEEecCccccc
Q 024731 234 YLSMGFCTLTG 244 (263)
Q Consensus 234 ~L~l~~n~l~~ 244 (263)
.|++++|+++.
T Consensus 204 ~L~l~~n~i~~ 214 (291)
T 1h6t_A 204 VLELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEEC
T ss_pred EEECcCCcccC
Confidence 88888887764
No 69
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.79 E-value=4.1e-19 Score=135.78 Aligned_cols=139 Identities=23% Similarity=0.249 Sum_probs=117.1
Q ss_pred CCcCCcEEEccCcccC-CCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731 101 PFQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 179 (263)
..++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|. .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence 4578999999999997 556653 67889999999999999865 7889999999999999999876775 77779
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch---hhhhcCCCCCEEEecCcccccccCc
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
++|++|++++|.+++......+..+++|++|++++|.+++.. + ..+..+++|++|++++|.+. .+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999999999999988322134899999999999999998654 4 47899999999999999987 5665
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=153.24 Aligned_cols=171 Identities=21% Similarity=0.207 Sum_probs=138.3
Q ss_pred CceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCC
Q 024731 65 ERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN 144 (263)
Q Consensus 65 ~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 144 (263)
....|.. ..+ .+.+++++...+ .. + .++|++|++++|.+++..+.. +..+++|++|++++|.++
T Consensus 26 ~~~~C~~--~~~--c~~~~~~l~~iP-----~~-~--~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~ 89 (353)
T 2z80_A 26 ASLSCDR--NGI--CKGSSGSLNSIP-----SG-L--TEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGIN 89 (353)
T ss_dssp -CCEECT--TSE--EECCSTTCSSCC-----TT-C--CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCC
T ss_pred cCCCCCC--CeE--eeCCCCCccccc-----cc-c--cccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccC
Confidence 4567754 233 788888876432 21 2 258999999999998766543 889999999999999999
Q ss_pred ccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch-hhhcCCCCCcEEEcCCCC-CCcccc
Q 024731 145 NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP-KELHNFTNLEELILDDSD-LHISQL 222 (263)
Q Consensus 145 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~ 222 (263)
+..|..|.++++|++|++++|.+++ +|...+..+++|++|++++|.+++ ++. ..+..+++|++|++++|. +....
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~- 166 (353)
T 2z80_A 90 TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQ- 166 (353)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEEC-
T ss_pred ccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccC-
Confidence 8778889999999999999999985 665468999999999999999987 555 448899999999999995 65444
Q ss_pred hhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731 223 LQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS 255 (263)
Q Consensus 223 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~ 255 (263)
+..++.+++|++|++++|.+++..|. .+.+++
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~ 198 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQ 198 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTT-TTTTCS
T ss_pred HHHccCCCCCCEEECCCCCcCccCHH-HHhccc
Confidence 77899999999999999999987676 444443
No 71
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.79 E-value=9.9e-19 Score=136.75 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=104.8
Q ss_pred EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+.++++++++.... .. + ..++++|++++|.+++..+.. .+..+++|++|+|++|.+++..|..|.++++
T Consensus 11 ~~l~~s~~~l~~ip-----~~-~--~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-----RD-I--PLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCC-----SC-C--CTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCc-----cC-C--CCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 46888988875432 21 2 238899999999988766531 2678889999999999999887888999999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 221 (263)
|++|++++|++++..+. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..
T Consensus 80 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 80 IQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCCSG
T ss_pred CCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccCcC
Confidence 99999999998865554 7888999999999999998855554 888899999999999988664
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.9e-20 Score=171.84 Aligned_cols=149 Identities=13% Similarity=0.152 Sum_probs=125.8
Q ss_pred cccccCCcCCcEEEccCcccCCC-----------------CCcccccccC--CCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 96 ASLFTPFQQLESLYLIGNNIAGC-----------------VENEGLDTLS--RLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+..++++++|++|++++|.+++. +|.. +. ++++|++|++++|.+.+.+|..++++++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~----l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED----LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC----CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh----hhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 44588999999999999999984 5543 77 8999999999999999999999999999
Q ss_pred CCEEEcCCCc-CCC-CcCccccCCC------CCCCEEEcCCCCCCCCCch--hhhcCCCCCcEEEcCCCCCCcccchhhh
Q 024731 157 LRNLSLIGNR-LIG-SIDIKGLDSL------GNLEELDMSDNAINNLVIP--KELHNFTNLEELILDDSDLHISQLLQSI 226 (263)
Q Consensus 157 L~~L~L~~n~-l~~-~~p~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l 226 (263)
|++|++++|+ +++ .+|. .+..+ ++|++|++++|.++ .+|. . ++++++|++|++++|+++|.+ | .+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~i-p-~~ 349 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGKL-P-AF 349 (636)
T ss_dssp CCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEEC-C-CC
T ss_pred CCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccch-h-hh
Confidence 9999999998 887 7886 66665 89999999999998 4776 5 899999999999999998777 6 78
Q ss_pred hcCCCCCEEEecCcccccccCccchhcHH
Q 024731 227 ASFTSLKYLSMGFCTLTGALHGQGKLRVS 255 (263)
Q Consensus 227 ~~l~~L~~L~l~~n~l~~~~p~~~l~~L~ 255 (263)
+.+++|++|++++|.++ .+|. .+.+++
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~-~l~~l~ 376 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPA-NFCGFT 376 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCT-TSEEEC
T ss_pred CCCCCCCEEECCCCccc-cccH-hhhhhc
Confidence 88888888888888887 6776 344433
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=2.8e-19 Score=161.07 Aligned_cols=160 Identities=23% Similarity=0.191 Sum_probs=134.3
Q ss_pred EecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCC
Q 024731 79 LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158 (263)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 158 (263)
.|.+++++...+ .. + .++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..|+++++|+
T Consensus 10 c~~~~~~l~~ip-----~~-~--~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 10 CDGRSRSFTSIP-----SG-L--TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTTSCCSSCC-----SC-C--CTTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EECCCCcccccc-----cc-C--CCCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 688888775432 22 2 278999999999998877654 89999999999999999988888999999999
Q ss_pred EEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC-CchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237 (263)
Q Consensus 159 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 237 (263)
+|++++|.+.+..|. .+..+++|++|++++|.+++. .+.. ++++++|++|++++|.+.+.+.+..+..+++|++|++
T Consensus 78 ~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 78 HLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp EEECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred EEECCCCccCccCHH-HhccCCCCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 999999999865544 799999999999999999863 3444 8999999999999999655663568999999999999
Q ss_pred cCcccccccCccchhc
Q 024731 238 GFCTLTGALHGQGKLR 253 (263)
Q Consensus 238 ~~n~l~~~~p~~~l~~ 253 (263)
++|.+++.+|. .+.+
T Consensus 156 ~~n~l~~~~~~-~l~~ 170 (549)
T 2z81_A 156 KALSLRNYQSQ-SLKS 170 (549)
T ss_dssp EETTCCEECTT-TTTT
T ss_pred cCCcccccChh-hhhc
Confidence 99999988877 4443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.9e-18 Score=144.98 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=128.0
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.++++++.+... ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 41 ~~L~~L~l~~~~i~~l-------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-~~-~~~~ 105 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-VS-AIAG 105 (308)
T ss_dssp HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred CCcCEEEeeCCCccCc-------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence 3688999999987532 247889999999999999987543 7889999999999999985 33 6899
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|++++.. . +..+++|+
T Consensus 106 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~ 176 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLT 176 (308)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCC
T ss_pred CCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCCh--h-hcCCCCCC
Confidence 9999999999999885 44 588999999999999999884 33 889999999999999998643 3 89999999
Q ss_pred EEEecCcccccccC
Q 024731 234 YLSMGFCTLTGALH 247 (263)
Q Consensus 234 ~L~l~~n~l~~~~p 247 (263)
+|++++|.+++..|
T Consensus 177 ~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 177 TLKADDNKISDISP 190 (308)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEECCCCccCcChh
Confidence 99999999986443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=4.1e-19 Score=158.05 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=116.0
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC-CCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l 179 (263)
.+++|+.|++++|.+++..+.. +..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. | ....+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~--~~~~l 190 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVF 190 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCC
T ss_pred ccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c--ccccC
Confidence 4577888888888888776643 67788899999999999887777776 788999999999998754 3 34468
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc-cccCccchhcHHHHH
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT-GALHGQGKLRVSEAF 258 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~l~~L~~L~ 258 (263)
++|++|++++|.+++ +|+. +..+++|+.|++++|.+++ + |..+..+++|+.|++++|.+. +.+|. .+..+..|.
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~-l-p~~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~ 265 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-I-EKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQ 265 (487)
T ss_dssp TTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-E-CTTCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHH
T ss_pred CCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCcc-c-chhhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCc
Confidence 899999999999988 5565 8888999999999999984 5 777888899999999999988 55555 444444444
Q ss_pred H
Q 024731 259 M 259 (263)
Q Consensus 259 ~ 259 (263)
.
T Consensus 266 ~ 266 (487)
T 3oja_A 266 T 266 (487)
T ss_dssp H
T ss_pred E
Confidence 3
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7e-19 Score=159.17 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=94.1
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccc-cCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLG 152 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~ 152 (263)
.+++.+++++|.+.. ..+..+..+++|++|++++|.+++..+. ...+..+++|++|++++|.+++.+|. .+.
T Consensus 353 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 353 SSFTFLNFTQNVFTD-----SVFQGCSTLKRLQTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCEEECCSSCCCT-----TTTTTCCSCSSCCEEECCSSCCCBTTHH--HHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred CCceEEECCCCcccc-----chhhhhcccCCCCEEECCCCCcCCcccc--hhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 345566666665532 1123455666666666666666543210 01255666666666666666653443 355
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhh-hhcCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQS-IASFTS 231 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-l~~l~~ 231 (263)
.+++|++|++++|.+++.+|. .+. ++|++|++++|.++. +|.. +..+++|++|++++|+++ .+ |.. +..+++
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~~-ip~~-~~~l~~L~~L~L~~N~l~-~l-~~~~~~~l~~ 498 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIMS-IPKD-VTHLQALQELNVASNQLK-SV-PDGVFDRLTS 498 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCCC-CCTT-TTSSCCCSEEECCSSCCC-CC-CTTSTTTCTT
T ss_pred CcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCcc-cChh-hcCCCCCCEEECCCCCCC-CC-CHHHHhcCCC
Confidence 666666666666666554443 222 566777777776664 5554 446677777777777776 33 333 666777
Q ss_pred CCEEEecCcccccccCc
Q 024731 232 LKYLSMGFCTLTGALHG 248 (263)
Q Consensus 232 L~~L~l~~n~l~~~~p~ 248 (263)
|++|++++|++.+..|.
T Consensus 499 L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCEECCSCCBCCCHHH
T ss_pred CCEEEecCCCcCCCcch
Confidence 77777777777665544
No 77
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.7e-18 Score=139.21 Aligned_cols=143 Identities=21% Similarity=0.226 Sum_probs=118.6
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
.-+.++.+++.++..+.. + .++|++|++++|.+++..|..|..+++|++|++++|.+. .+|...+..+++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~-----~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-----I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred eCCEeEccCCCcCccCCC-----C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcC
Confidence 356788888888754432 2 389999999999999888999999999999999999997 45554789999999
Q ss_pred EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
+|++++|.+++ ++...+..+++|++|++++|+++ .+ |..+..+++|++|++++|++++ +|...+..+++|.
T Consensus 92 ~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 92 VLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-EL-PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT 162 (229)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SC-CTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred EEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-cc-CcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC
Confidence 99999999998 55555889999999999999998 56 8889999999999999999995 4443455554443
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=9.4e-19 Score=148.02 Aligned_cols=89 Identities=25% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+. .+..+++|++|++++|+++ .+ |..+..+++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~l-p~~l~~l~~L~~ 267 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KV-PGGLADHKYIQV 267 (330)
T ss_dssp TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-SC-CTTTTTCSSCCE
T ss_pred ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCc-cC-ChhhccCCCcCE
Confidence 4566666666666654454 788999999999999999985443 4899999999999999998 55 788999999999
Q ss_pred EEecCcccccccCc
Q 024731 235 LSMGFCTLTGALHG 248 (263)
Q Consensus 235 L~l~~n~l~~~~p~ 248 (263)
|++++|++++ +|.
T Consensus 268 L~l~~N~i~~-~~~ 280 (330)
T 1xku_A 268 VYLHNNNISA-IGS 280 (330)
T ss_dssp EECCSSCCCC-CCT
T ss_pred EECCCCcCCc-cCh
Confidence 9999999995 444
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=154.56 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=134.1
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCC--CCcccccccCCCCCCCEEEccCCcCCccccc-
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDYNHFNNSIFS- 149 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~- 149 (263)
...++.+++++|.+.. ..+..+..+++|++|++++|.+++. .|. .+..+++|++|++++|.+++.+|.
T Consensus 323 l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTD-----TVFENCGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCCCEEECCSSCCCT-----TTTTTCCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred CCcccEEEeECCccCh-----hhhhhhccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCcccccc
Confidence 4568899999998853 1245678999999999999999863 232 378999999999999999975666
Q ss_pred cCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchh-hhhc
Q 024731 150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ-SIAS 228 (263)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~l~~ 228 (263)
.+..+++|++|++++|.+++.+|. .+. ++|++|++++|.++. +|.. +..+++|++|++++|+++. + |. .+..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~L~~N~l~~-l-~~~~~~~ 466 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIKS-IPKQ-VVKLEALQELNVASNQLKS-V-PDGIFDR 466 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCCC-CCGG-GGGCTTCCEEECCSSCCCC-C-CTTTTTT
T ss_pred hhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCcccc-cchh-hhcCCCCCEEECCCCcCCc-c-CHHHhcc
Confidence 488899999999999999887775 443 799999999999995 7776 6799999999999999984 5 44 4899
Q ss_pred CCCCCEEEecCcccccccCc
Q 024731 229 FTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 229 l~~L~~L~l~~n~l~~~~p~ 248 (263)
+++|++|++++|++++..+.
T Consensus 467 l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CTTCCEEECCSSCBCCCHHH
T ss_pred CCcccEEECcCCCCcccCCc
Confidence 99999999999999976653
No 80
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.77 E-value=1.1e-18 Score=130.81 Aligned_cols=131 Identities=23% Similarity=0.280 Sum_probs=102.6
Q ss_pred CCcCCcEEEccCcccC-CCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731 101 PFQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 179 (263)
..++++.|++++|.++ +.+|.. +..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|. .+..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred CCccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence 3467889999999887 555543 67888999999999988855 6788888999999999988876665 66678
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch---hhhhcCCCCCEEEecC
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSMGF 239 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~ 239 (263)
++|++|++++|.+++......+..+++|++|++++|++++.. + ..+..+++|++|++++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCCC
Confidence 889999999998887311134888889999999999887654 4 4688888999888763
No 81
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=3.6e-18 Score=145.23 Aligned_cols=143 Identities=20% Similarity=0.299 Sum_probs=111.2
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~ 263 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKD 263 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhc
Confidence 3444555555555555543322 5678899999999999985433 8889999999999999875 33 6889
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHH
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE 256 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~ 256 (263)
+++|++|++++|.+++. +. +..+++|++|++++|++++.. +..+..+++|++|++++|++++..|-..+.+|++
T Consensus 264 l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 337 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSE
T ss_pred CCCcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCccccccChhhhhccce
Confidence 99999999999999884 33 888999999999999998777 8889999999999999999997666444554443
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=1.7e-18 Score=159.92 Aligned_cols=119 Identities=24% Similarity=0.245 Sum_probs=74.4
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCc-------CccccCCCCCCCEEEcCCCCCCCCCchh
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI-------DIKGLDSLGNLEELDMSDNAINNLVIPK 199 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 199 (263)
+..+++|++|++++|++++..+..+.++++|++|++++|.+++.. |...+..+++|++|++++|.++. +|..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~ 554 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVE 554 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHH
Confidence 556666777777777776555556666777777777777665321 11125566667777777776664 4544
Q ss_pred hhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccC
Q 024731 200 ELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH 247 (263)
Q Consensus 200 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 247 (263)
.+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred HcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccCh
Confidence 4666777777777777776433 4556666777777777777765433
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=5.3e-20 Score=154.50 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=112.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc--cc--c
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS--IF--S 149 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p--~ 149 (263)
.+++.+++++|.+..... .+....+..+++|++|++++|.+.+..+.. +..+++|++|++++|++.+. ++ .
T Consensus 117 ~~L~~L~Ls~n~i~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRS-WLAELQQWLKPGLKVLSIAQAHSPAFSCEQ----VRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp BCCSSCEEESCCCSSTTS-SHHHHHTTBCSCCCEEEEECCSSCCCCTTS----CCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred CCCCEEEeecccccchhh-hhHHHHhhhccCCCEEEeeCCCcchhhHHH----hccCCCCCEEECCCCCCccchhhhHHH
Confidence 456778888888753221 011123446888888888888887766653 77888888888888887642 22 2
Q ss_pred cCCCCCCCCEEEcCCCcCCCCcCc---cccCCCCCCCEEEcCCCCCCCCCchhhhcCC---CCCcEEEcCCCCCCcccch
Q 024731 150 SLGGLSSLRNLSLIGNRLIGSIDI---KGLDSLGNLEELDMSDNAINNLVIPKELHNF---TNLEELILDDSDLHISQLL 223 (263)
Q Consensus 150 ~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~ 223 (263)
.++.+++|++|++++|.++. ++. ..+..+++|++|++++|.+++..|.. +..+ ++|++|++++|+++ .+ |
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~-~l-p 267 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLE-QV-P 267 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCC-SC-C
T ss_pred hhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCC-ch-h
Confidence 34678888888888888762 332 02456788888888888888865654 5555 68888888888887 45 5
Q ss_pred hhhhcCCCCCEEEecCccccc
Q 024731 224 QSIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 224 ~~l~~l~~L~~L~l~~n~l~~ 244 (263)
..+. ++|++|++++|++++
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCS
T ss_pred hhhc--CCCCEEECCCCcCCC
Confidence 5553 688888888888886
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.8e-19 Score=158.26 Aligned_cols=162 Identities=23% Similarity=0.231 Sum_probs=101.7
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC-------------
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN------------- 141 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n------------- 141 (263)
+++.|++++|.+.. +.+..|..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-----ISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCC-----CCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CccEEEeeCCcCCC-----CCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence 45666666665532 223345556666666666666554332 444555555555555
Q ss_pred ------cCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhc-CCCCCcEEEcCC
Q 024731 142 ------HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH-NFTNLEELILDD 214 (263)
Q Consensus 142 ------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~ 214 (263)
.+++..+. .+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|.. +. .+++|++|++++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTT
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCC
Confidence 44433332 346778888888887765555 6777888888888888888755554 44 678888888888
Q ss_pred CCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731 215 SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 215 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
|.+++.. ....+++|++|++++|.+++..|. +..++.|
T Consensus 179 N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L 216 (487)
T 3oja_A 179 NFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGV 216 (487)
T ss_dssp SCCCEEE---CCCCCTTCCEEECCSSCCCEECGG--GGGGTTC
T ss_pred Ccccccc---ccccCCCCCEEECCCCCCCCCCHh--HcCCCCc
Confidence 8887542 234588888888888888864333 4444443
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=8.7e-19 Score=137.58 Aligned_cols=143 Identities=20% Similarity=0.347 Sum_probs=120.0
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
...+++|++|++++|.++.. +. +..+++|++|++++|.++. +..+..+++|++|++++|.+++..+. .+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l-~~-----l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~ 110 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL-TG-----IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NLSG 110 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC-TT-----GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTT
T ss_pred hhhcCCccEEeccCCCccCh-HH-----HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hhcC
Confidence 36678999999999999843 33 7889999999999997763 45788999999999999999876676 8999
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCC-CCcccchhhhhcCCCCCEEEecCcccccccCc-cchhcHH
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVS 255 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~l~~L~ 255 (263)
+++|++|++++|.+++..+.. +..+++|++|++++|. ++ .+ + .+..+++|++|++++|.+++ ++. ..+++|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~-~~-~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~ 184 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT-DI-M-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLN 184 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC-CC-G-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCC
T ss_pred CCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc-cc-H-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCC
Confidence 999999999999999866665 9999999999999998 65 44 4 68999999999999999986 443 3444443
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-17 Score=137.25 Aligned_cols=147 Identities=21% Similarity=0.273 Sum_probs=124.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.++++++.+... ..+..+++|++|++++|.+++..+ +..+++|++|++++|++++ +|. +..
T Consensus 41 ~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~-~~~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL-------AGMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNG-IPS 105 (263)
T ss_dssp TTCSEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTT-CCC
T ss_pred CcCcEEECcCCCcccc-------hHHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCc-ccc
Confidence 4678999999988532 147889999999999999987544 7889999999999999985 444 333
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++ . +..+++|++|++++|++++. ..+..+++|+
T Consensus 106 -~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~-~~-~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~ 175 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKS-IV-M-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVN 175 (263)
T ss_dssp -SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCB-CG-G-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCC
T ss_pred -CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCC-Ch-H-HccCCCCCEEECCCCcCcch---HHhccCCCCC
Confidence 999999999999985 44 68899999999999999998 43 3 88999999999999999854 5688999999
Q ss_pred EEEecCcccccc
Q 024731 234 YLSMGFCTLTGA 245 (263)
Q Consensus 234 ~L~l~~n~l~~~ 245 (263)
.|++++|++++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 999999999854
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=5.5e-18 Score=153.32 Aligned_cols=168 Identities=18% Similarity=0.129 Sum_probs=138.3
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc--cccccC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSSL 151 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l 151 (263)
.+++.++++++.+... .....+++|++|++++|.+++..+.. +..+++|++|++++|++++ .+|..+
T Consensus 331 ~~L~~L~l~~n~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 331 MNIKMLSISDTPFIHM-------VCPPSPSSFTFLNFTQNVFTDSVFQG----CSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp CCCSEEEEESSCCCCC-------CCCSSCCCCCEEECCSSCCCTTTTTT----CCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred CcceEEEccCCCcccc-------cCccCCCCceEEECCCCccccchhhh----hcccCCCCEEECCCCCcCCcccchhhh
Confidence 3578899999987421 12368899999999999999877754 8899999999999999996 446789
Q ss_pred CCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 231 (263)
.++++|++|++++|.+.+.+|...+..+++|++|++++|.+++.++.. +. ++|++|++++|+++ .+ |..+..+++
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~i-p~~~~~l~~ 474 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SI-PKDVTHLQA 474 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CC-CTTTTSSCC
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCc-cc-ChhhcCCCC
Confidence 999999999999999997677756889999999999999998755443 32 69999999999998 56 777779999
Q ss_pred CCEEEecCcccccccCccchhcHHHHH
Q 024731 232 LKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 232 L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
|++|++++|+++ .+|...+..+++|+
T Consensus 475 L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 475 LQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp CSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred CCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 999999999999 57763355555443
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=2.7e-18 Score=145.41 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+. .+..+++|++|++++|+++ .+ |..+..+++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~l-p~~l~~l~~L~~ 268 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS-RV-PAGLPDLKLLQV 268 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC-BC-CTTGGGCTTCCE
T ss_pred CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe-ec-ChhhhcCccCCE
Confidence 3455555555555543333 555566666666666666553222 2555666666666666665 33 455556666666
Q ss_pred EEecCccccc
Q 024731 235 LSMGFCTLTG 244 (263)
Q Consensus 235 L~l~~n~l~~ 244 (263)
|++++|++++
T Consensus 269 L~l~~N~l~~ 278 (332)
T 2ft3_A 269 VYLHTNNITK 278 (332)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCCCCc
Confidence 6666666553
No 89
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=1.7e-17 Score=127.85 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=84.7
Q ss_pred EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+.++++++++.... . .-.++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..+++
T Consensus 10 ~~l~~~~~~l~~~p-----~---~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-----T---GIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TEEECCSSCCSSCC-----T---TCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecCCCCccCC-----C---CCCCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCc
Confidence 35677777664321 1 12356777777777776554432 566777777777777777555555677777
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 221 (263)
|++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..+++|++|++++|++.+..
T Consensus 78 L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNG-VFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCEEECCCCCccccCHH-HhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccC
Confidence 77777777777643332 56677777777777777765 44443566777777777777776543
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.1e-19 Score=169.12 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=107.6
Q ss_pred cccccCCcCCcEEEccCcccCCC-----------------CCcccccccC--CCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 96 ASLFTPFQQLESLYLIGNNIAGC-----------------VENEGLDTLS--RLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+..++.+++|++|++++|.+++. +|.. ++ ++++|++|+|++|.+.+.+|..++++++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~----l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC----CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh----hhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 34578888888888888888872 4443 55 7888888888888888888888888888
Q ss_pred CCEEEcCCCc-CCC-CcCccccCC-------CCCCCEEEcCCCCCCCCCch-hhhcCCCCCcEEEcCCCCCCcccchhhh
Q 024731 157 LRNLSLIGNR-LIG-SIDIKGLDS-------LGNLEELDMSDNAINNLVIP-KELHNFTNLEELILDDSDLHISQLLQSI 226 (263)
Q Consensus 157 L~~L~L~~n~-l~~-~~p~~~~~~-------l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l 226 (263)
|++|++++|+ +++ .+|. .+.. +++|++|++++|.++ .+|. ..++++++|++|++++|+++ .+ | .+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-p-~~ 591 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL-E-AF 591 (876)
T ss_dssp CCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC-C-CC
T ss_pred CCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc-h-hh
Confidence 8888888887 776 5665 4433 448888888888887 4665 12777888888888888877 55 5 67
Q ss_pred hcCCCCCEEEecCcccccccCc
Q 024731 227 ASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 227 ~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+.+++|+.|++++|.++ .+|.
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~ 612 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPE 612 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCT
T ss_pred cCCCcceEEECcCCccc-cchH
Confidence 77777777787777777 6665
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.5e-18 Score=154.17 Aligned_cols=149 Identities=28% Similarity=0.353 Sum_probs=123.4
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
-..++.|++++|.+.... + +..+++|+.|+|++|.+.+. +. +..+++|++|+|++|.+++ + ..+.
T Consensus 64 l~~L~~L~Ls~N~l~~~~-----~--l~~l~~L~~L~Ls~N~l~~l-~~-----l~~l~~L~~L~Ls~N~l~~-l-~~l~ 128 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIK-----P--LTNLKNLGWLFLDENKIKDL-SS-----LKDLKKLKSLSLEHNGISD-I-NGLV 128 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-----G--GGGCTTCCEEECCSSCCCCC-TT-----STTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred CCCCCEEEeeCCCCCCCh-----h--hccCCCCCEEECcCCCCCCC-hh-----hccCCCCCEEEecCCCCCC-C-cccc
Confidence 347889999999885322 2 78899999999999999864 22 7889999999999999985 3 4588
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
.+++|+.|+|++|.+++. . .+..+++|+.|+|++|.+.+.. + +..+++|+.|+|++|++++ + ..+..+++|
T Consensus 129 ~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~i~~-l--~~l~~l~~L 199 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKNHISD-L--RALAGLKNL 199 (605)
T ss_dssp GCTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTC
T ss_pred CCCccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCCCCCC-C--hHHccCCCC
Confidence 899999999999998854 3 7889999999999999998843 3 8889999999999999985 3 458889999
Q ss_pred CEEEecCcccccc
Q 024731 233 KYLSMGFCTLTGA 245 (263)
Q Consensus 233 ~~L~l~~n~l~~~ 245 (263)
+.|++++|++++.
T Consensus 200 ~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 200 DVLELFSQECLNK 212 (605)
T ss_dssp SEEECCSEEEECC
T ss_pred CEEEccCCcCcCC
Confidence 9999999999864
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.1e-17 Score=137.50 Aligned_cols=157 Identities=25% Similarity=0.369 Sum_probs=131.6
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.++++++.+... ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 46 ~~L~~L~l~~~~i~~~-------~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred CcccEEEccCCCcccC-------hhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence 3578999999988532 237889999999999999987544 7899999999999999985 34 4899
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++. .. +..+++|++|++++|++++.. + +..+++|+
T Consensus 111 l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~L~ 181 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQ 181 (291)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred CCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCCccccch-h--hcCCCccC
Confidence 9999999999999885 43 688999999999999999984 43 899999999999999998654 4 89999999
Q ss_pred EEEecCcccccccCccchhcHHHH
Q 024731 234 YLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
+|++++|.+++ +|. +..+++|
T Consensus 182 ~L~L~~N~i~~-l~~--l~~l~~L 202 (291)
T 1h6t_A 182 NLYLSKNHISD-LRA--LAGLKNL 202 (291)
T ss_dssp EEECCSSCCCB-CGG--GTTCTTC
T ss_pred EEECCCCcCCC-Chh--hccCCCC
Confidence 99999999985 554 4444333
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.4e-18 Score=146.24 Aligned_cols=169 Identities=20% Similarity=0.146 Sum_probs=120.4
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccc------------cccCCCCCCCEEEccCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGL------------DTLSRLNNLKFLYLDYN 141 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------~~l~~l~~L~~L~Ls~n 141 (263)
.+++.+++++|.+.... .+..+++|++|++++|.+++..+.... .....+++|++|++++|
T Consensus 58 ~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 58 TKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (317)
T ss_dssp TTCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred CcCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence 35666777776663211 145556666666666655432211000 00234678999999999
Q ss_pred cCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc-CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 142 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
.+++..+..++.+++|++|++++|.+.+..+. .+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~- 205 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAF- 205 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCE-
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCc-
Confidence 99987777888999999999999998865555 44 4789999999999999874 33 4468999999999999985
Q ss_pred cchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731 221 QLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 221 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
+ +..+..+++|++|++++|+++ .+|. .+..+++|
T Consensus 206 l-~~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~l~~L 239 (317)
T 3o53_A 206 M-GPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNL 239 (317)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCC-EECT-TCCCCTTC
T ss_pred c-hhhhcccCcccEEECcCCccc-chhh-HhhcCCCC
Confidence 4 556899999999999999999 5676 34444433
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=160.24 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=140.4
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcccccc--C
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--L 151 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l 151 (263)
.+++.|++++|... + .+.+..|.++++|++|++++|.+.+..|.. +.++++|++|+|++|.+++.+|.. +
T Consensus 48 ~~L~~LdLs~n~~~--~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 48 EQLQLLELGSQYTP--L--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSCSEEEECTTCCC--C--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccCeEEeCCCCCCc--c--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence 46889999998542 2 355677999999999999999999887764 899999999999999999877665 8
Q ss_pred CCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCC--CCCcEEEcCCCCCCcccchhhhhcC
Q 024731 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNF--TNLEELILDDSDLHISQLLQSIASF 229 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~l~~l 229 (263)
+++++|++|++++|.+.+..+...+.++++|++|++++|.+++..+.. +..+ ++|+.|++++|.+.+.. +..++.+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~ 197 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRV-SVDWGKC 197 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCC-CCCCCSS
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCcccccc-ccchhhc
Confidence 999999999999999987655447999999999999999999866654 7766 89999999999998876 6666666
Q ss_pred CC------CCEEEecCcccccccCc
Q 024731 230 TS------LKYLSMGFCTLTGALHG 248 (263)
Q Consensus 230 ~~------L~~L~l~~n~l~~~~p~ 248 (263)
++ |++|++++|.+++.+|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred CCccccCceeEEecCCCcCchhHHH
Confidence 55 99999999999887776
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.4e-17 Score=147.37 Aligned_cols=130 Identities=28% Similarity=0.387 Sum_probs=57.3
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. + .+..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~~ 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-S--PISN 307 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-G--GGGG
T ss_pred hhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-h--hhcC
Confidence 3445555555555555544322 3444555555555555543222 44444555555555544432 1 1334
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
+++|++|++++|.+++..+ +..+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 308 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCcc
Confidence 4444444444444444211 33344444444444444321 2333444444444444444433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.1e-18 Score=147.24 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=134.1
Q ss_pred CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132 (263)
Q Consensus 62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 132 (263)
|.+..|.|... ...+++|++++|++.. +.+..|.++++|++|++++|.+.+.++.. .|.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchh
Confidence 78999999752 2368899999999863 45567899999999999999997766652 3677777
Q ss_pred CCE-EEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcC------------------------ccccCCC-CCCCEEE
Q 024731 133 LKF-LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID------------------------IKGLDSL-GNLEELD 186 (263)
Q Consensus 133 L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------------------------~~~~~~l-~~L~~L~ 186 (263)
+++ +.+++|+++...|..|..+++|++|++++|.+....+ ...+..+ ..++.|+
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 665 5566788886667778888888888888887653221 1122223 2467788
Q ss_pred cCCCCCCCCCchhhhcCCCCCcEEEcCC-CCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 187 MSDNAINNLVIPKELHNFTNLEELILDD-SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 187 L~~n~l~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
+++|.++. ++.. .....+|+.+++.+ |.++ .+.++.|..+++|++||+++|+++ .+|...+.+|++|+
T Consensus 161 L~~N~i~~-i~~~-~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 161 LNKNGIQE-IHNS-AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229 (350)
T ss_dssp CCSSCCCE-ECTT-SSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred cccccccC-CChh-hccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhh
Confidence 88888876 5554 44556788888875 5555 452567889999999999999998 56765666665554
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=3.7e-19 Score=150.67 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=68.6
Q ss_pred cCCcCCcEEEccCcccCCC-CCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCC-cCCCC-cCcccc
Q 024731 100 TPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN-RLIGS-IDIKGL 176 (263)
Q Consensus 100 ~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~ 176 (263)
..+++|++|++++|.+++. .+. .+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++. .+
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~ 164 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LL 164 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HH
T ss_pred ccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HH
Confidence 3456666666666655432 222 2455566666666666655555555555666666666665 34321 232 34
Q ss_pred CCCCCCCEEEcCCC-CCCCCCchhhhcCCC-CCcEEEcCCC--CCCcccchhhhhcCCCCCEEEecCcc
Q 024731 177 DSLGNLEELDMSDN-AINNLVIPKELHNFT-NLEELILDDS--DLHISQLLQSIASFTSLKYLSMGFCT 241 (263)
Q Consensus 177 ~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~-~L~~L~l~~n--~l~~~~~~~~l~~l~~L~~L~l~~n~ 241 (263)
..+++|++|++++| .+++......+..++ +|++|++++| .+++..++..+..+++|++|++++|.
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 45555555555555 554321112244455 5555555555 33322214444455555555555555
No 98
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.8e-17 Score=127.81 Aligned_cols=128 Identities=21% Similarity=0.230 Sum_probs=100.7
Q ss_pred EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (263)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 157 (263)
.++++++++...+. . + .+++++|++++|.++.. |. .+..+++|++|++++|.+++..+..|.++++|
T Consensus 14 ~l~~~~~~l~~ip~-----~-~--~~~l~~L~L~~n~i~~i-p~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 14 VVRCSNKGLKVLPK-----G-I--PRDVTELYLDGNQFTLV-PK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp EEECTTSCCSSCCS-----C-C--CTTCCEEECCSSCCCSC-CG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEcCCCCCCcCCC-----C-C--CCCCCEEECCCCcCchh-HH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 57888888754321 1 1 25789999999998743 33 37888999999999999987777788899999
Q ss_pred CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
++|++++|.+++..+. .+..+++|++|+|++|.++. ++...+..+++|+.|++++|.+...
T Consensus 81 ~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPR-TFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CEEECCSSCCCBCCTT-TTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCccCEeCHH-HhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecC
Confidence 9999999998865554 78889999999999999887 5554588888999999999988643
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=8.5e-20 Score=154.60 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=140.6
Q ss_pred CCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCC--cCCcEEEccCcccCCCCCcccccccCCCCCCCEEE
Q 024731 60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPF--QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137 (263)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~ 137 (263)
-|.+|.++.|+ ...++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|+
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~ 99 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMD 99 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEE
T ss_pred HHHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEE
Confidence 45578888874 345778999988764 2335556 7999999999999987765 56799999999
Q ss_pred ccCCcCCcc-ccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCC-CCCCCCchhhhcCCCCCcEEEcCCC
Q 024731 138 LDYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-AINNLVIPKELHNFTNLEELILDDS 215 (263)
Q Consensus 138 Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n 215 (263)
+++|.+++. ++..+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++...+..+..+++|++|++++|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 999999866 788899999999999999998877776 8889999999999999 6775322333788999999999999
Q ss_pred -CCCcccchhhhhcCC-CCCEEEecCc--ccc-cccCc
Q 024731 216 -DLHISQLLQSIASFT-SLKYLSMGFC--TLT-GALHG 248 (263)
Q Consensus 216 -~l~~~~~~~~l~~l~-~L~~L~l~~n--~l~-~~~p~ 248 (263)
.+++..++..+..++ +|++|++++| .++ +.+|.
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 998653377889999 9999999999 455 34444
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4.4e-17 Score=138.52 Aligned_cols=130 Identities=22% Similarity=0.332 Sum_probs=112.4
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+ ++ .+..
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~~~~ 285 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS--VLNN 285 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch--hhcC
Confidence 6788999999999999987544 78899999999999999853 468899999999999999885 44 6889
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
+++|++|++++|.+++..+. .+..+++|++|++++|++++.. | +..+++|++|++++|.++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIR-P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCG-G--GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcccccc-C--hhhhhccceeehhhhccc
Confidence 99999999999999985555 4999999999999999998655 4 889999999999999986
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=4.8e-17 Score=127.11 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCEEEccCCcCCccccc-cCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEE
Q 024731 132 NLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 210 (263)
++++|++++|.+++..+. .++.+++|++|++++|.+++..|. .+..+++|++|++++|.+++..+. .+..+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNK-MFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHH-HhcCCCCCCEE
Confidence 555555555555533332 245555555555555555544343 555555555555555555553222 25555555555
Q ss_pred EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccC
Q 024731 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH 247 (263)
Q Consensus 211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 247 (263)
++++|++++.. |..+..+++|++|++++|++++..+
T Consensus 108 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 108 NLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 55555555444 4555555555555555555554443
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1e-18 Score=162.31 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=56.2
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 206 (263)
+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|. .+..+++|++|+|++|.++. +|.. ++.+++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~ 294 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLTS-LPAE-LGSCFQ 294 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCSS-CCSS-GGGGTT
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCCc-cChh-hcCCCC
Confidence 444455555555555554 34444445555555555555544 4443 44555555555555555542 3443 455555
Q ss_pred CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
|++|+|++|.++ .+ |..|+.+++|++|+|++|.+++.+|.
T Consensus 295 L~~L~L~~N~l~-~l-p~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TL-PWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSEEECCSSCCC-CC-CSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCEEECCCCCCC-cc-ChhhhcCCCccEEeCCCCccCCCChH
Confidence 555555555554 33 44455555555555555555544444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=8.4e-17 Score=146.40 Aligned_cols=157 Identities=25% Similarity=0.372 Sum_probs=131.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.|+++++.+... ..+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+++ +| .+..
T Consensus 43 ~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~ 107 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKD 107 (605)
T ss_dssp TTCCCCBCTTCCCCCC-------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred CCCCEEECcCCCCCCC-------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence 4577889999887532 247889999999999999987654 7889999999999999985 33 7899
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. .. +..+++|+.|+|++|++++.. + +..+++|+
T Consensus 108 l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~ 178 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQ 178 (605)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GG-GGSCTTCSEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred CCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hh-hcccCCCCEEECcCCcCCCch-h--hccCCCCC
Confidence 9999999999999985 43 688999999999999999984 43 899999999999999998755 4 89999999
Q ss_pred EEEecCcccccccCccchhcHHHH
Q 024731 234 YLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 234 ~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
.|+|++|++++ +|. +..+++|
T Consensus 179 ~L~Ls~N~i~~-l~~--l~~l~~L 199 (605)
T 1m9s_A 179 NLYLSKNHISD-LRA--LAGLKNL 199 (605)
T ss_dssp EEECCSSCCCB-CGG--GTTCTTC
T ss_pred EEECcCCCCCC-ChH--HccCCCC
Confidence 99999999986 444 4444443
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.4e-17 Score=135.19 Aligned_cols=145 Identities=21% Similarity=0.251 Sum_probs=119.9
Q ss_pred EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCC
Q 024731 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (263)
Q Consensus 76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 155 (263)
++.++++++.+.... .+..+++|++|++++|.++... . +..+++|++|++++|++++..+ +.+++
T Consensus 21 l~~l~l~~~~i~~~~-------~~~~l~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~L~~N~i~~~~~--l~~l~ 85 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-------SQKELSGVQNFNGDNSNIQSLA-G-----MQFFTNLKELHLSHNQISDLSP--LKDLT 85 (263)
T ss_dssp HHHHHHTCSCTTSEE-------CHHHHTTCSEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTTCS
T ss_pred HHHHHhcCCCccccc-------chhhcCcCcEEECcCCCcccch-H-----HhhCCCCCEEECCCCccCCChh--hccCC
Confidence 345566666664221 3678899999999999998643 2 7889999999999999996544 89999
Q ss_pred CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEE
Q 024731 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 235 (263)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 235 (263)
+|++|++++|++++ +|. +.. ++|++|++++|.+++ + +. +..+++|++|++++|++++ . + .+..+++|++|
T Consensus 86 ~L~~L~L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~~-~-~~-l~~l~~L~~L~Ls~N~i~~-~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 86 KLEELSVNRNRLKN-LNG--IPS-ACLSRLFLDNNELRD-T-DS-LIHLKNLEILSIRNNKLKS-I-V-MLGFLSKLEVL 155 (263)
T ss_dssp SCCEEECCSSCCSC-CTT--CCC-SSCCEEECCSSCCSB-S-GG-GTTCTTCCEEECTTSCCCB-C-G-GGGGCTTCCEE
T ss_pred CCCEEECCCCccCC-cCc--ccc-CcccEEEccCCccCC-C-hh-hcCcccccEEECCCCcCCC-C-h-HHccCCCCCEE
Confidence 99999999999985 553 333 899999999999998 4 33 8999999999999999985 3 3 68999999999
Q ss_pred EecCcccccc
Q 024731 236 SMGFCTLTGA 245 (263)
Q Consensus 236 ~l~~n~l~~~ 245 (263)
++++|++++.
T Consensus 156 ~L~~N~i~~~ 165 (263)
T 1xeu_A 156 DLHGNEITNT 165 (263)
T ss_dssp ECTTSCCCBC
T ss_pred ECCCCcCcch
Confidence 9999999975
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=6.7e-17 Score=142.98 Aligned_cols=108 Identities=29% Similarity=0.377 Sum_probs=68.4
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 206 (263)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++. ++ +..+++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~ 310 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-IS--PLAGLTALTNLELNENQLEDI-SP--ISNLKN 310 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCSCC-GG--GGGCTT
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-cc--cccCCCccCeEEcCCCcccCc-hh--hcCCCC
Confidence 4555666666666666664333 5666666666666666654 22 255666777777777776663 22 566677
Q ss_pred CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
|+.|++++|++++.. + +..+++|++|++++|++++.
T Consensus 311 L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 311 LTYLTLYFNNISDIS-P--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSEEECCSSCCSCCG-G--GGGCTTCCEEECCSSCCCCC
T ss_pred CCEEECcCCcCCCch-h--hccCccCCEeECCCCccCCc
Confidence 777777777776543 3 56777777777777777653
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=3.3e-16 Score=120.63 Aligned_cols=135 Identities=18% Similarity=0.166 Sum_probs=107.6
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
..+.+++++++++..... ..++|++|++++|++++..+..+..+++|++|++++|.+++ +|...+..+++|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~-------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG-------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCSSCCTT-------CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred CCCEEEecCCCCccCCCC-------CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccC
Confidence 356788888888754332 23689999999999987666678889999999999999875 4443678899999
Q ss_pred EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|.
T Consensus 80 ~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 80 ILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccCcc
Confidence 99999999988 44444788899999999999998544 55678899999999999999887664
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.5e-17 Score=124.53 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=101.7
Q ss_pred CCCCCCCEEEccCCcCC-ccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731 128 SRLNNLKFLYLDYNHFN-NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206 (263)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 206 (263)
...++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|.+++.+|.. +..+++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~ 89 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEVL-AEKCPN 89 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHHH-HHHCTT
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHHH-hhhCCC
Confidence 34578999999999998 78898899999999999999999865 3 7899999999999999999865554 778999
Q ss_pred CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccC
Q 024731 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH 247 (263)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 247 (263)
|++|++++|++++...+..+..+++|++|++++|.+++..+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999999864225789999999999999999997655
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.71 E-value=3e-17 Score=126.43 Aligned_cols=136 Identities=19% Similarity=0.196 Sum_probs=112.1
Q ss_pred ccccCCcCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccc
Q 024731 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (263)
Q Consensus 97 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 175 (263)
..+....+|++|++++|.++.. +. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++ +|...
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-EN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCH
T ss_pred HhcCCcCCceEEEeeCCCCchh-HH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcch
Confidence 3466788999999999999854 43 3444 4999999999999964 688999999999999999985 55435
Q ss_pred cCCCCCCCEEEcCCCCCCCCCch-hhhcCCCCCcEEEcCCCCCCcccchh----hhhcCCCCCEEEecCccccc
Q 024731 176 LDSLGNLEELDMSDNAINNLVIP-KELHNFTNLEELILDDSDLHISQLLQ----SIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 176 ~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----~l~~l~~L~~L~l~~n~l~~ 244 (263)
+..+++|++|++++|.++. ++. ..+..+++|++|++++|+++. . |. .+..+++|++||+++|....
T Consensus 84 ~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-K-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-S-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-c-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 5889999999999999976 554 248899999999999999973 4 44 48999999999999998763
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=2.3e-16 Score=139.21 Aligned_cols=142 Identities=18% Similarity=0.115 Sum_probs=87.9
Q ss_pred cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 154 (263)
+++.+++++|.+... .++.+++|++|++++|.+++. + +..+++|++|++++|.+++ +| ++.+
T Consensus 65 ~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l 126 (457)
T 3bz5_A 65 GLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQN 126 (457)
T ss_dssp TCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred CCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence 455666666655321 145566666666666666553 1 4566666666666666664 33 5666
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|++|++++|.+++ + .+..+++|++|++++|...+.+ . +..+++|++|++++|++++ + + ++.+++|++
T Consensus 127 ~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~-l-~--l~~l~~L~~ 195 (457)
T 3bz5_A 127 PLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFNKITE-L-D--VSQNKLLNR 195 (457)
T ss_dssp TTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSSCCCC-C-C--CTTCTTCCE
T ss_pred CcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCCccce-e-c--cccCCCCCE
Confidence 666666666666654 2 2456666677777666544433 1 5667777777777777764 3 3 667777777
Q ss_pred EEecCcccccc
Q 024731 235 LSMGFCTLTGA 245 (263)
Q Consensus 235 L~l~~n~l~~~ 245 (263)
|++++|.+++.
T Consensus 196 L~l~~N~l~~~ 206 (457)
T 3bz5_A 196 LNCDTNNITKL 206 (457)
T ss_dssp EECCSSCCSCC
T ss_pred EECcCCcCCee
Confidence 77777777753
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.9e-17 Score=123.02 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=113.2
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+.. +. + +..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~-~~--i-~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GK--I-EGLTAEFVNLEFLSLINVGLISV-S-----NLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBT-TB--C-SSCCGGGGGCCEEEEESSCCCCC-S-----SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCCh-hh--H-HHHHHhCCCCCEEeCcCCCCCCh-h-----hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 568899999998851 12 2 34478899999999999999876 3 2889999999999999999778888888
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCc
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHI 219 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~ 219 (263)
+++|++|++++|.+++..+...+..+++|++|++++|.+++. +. ..+..+++|++|++++|.+..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999999998632213889999999999999999984 44 348999999999999998863
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=9.7e-17 Score=144.74 Aligned_cols=150 Identities=17% Similarity=0.130 Sum_probs=78.1
Q ss_pred CCCce-EEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC
Q 024731 63 QWERV-ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141 (263)
Q Consensus 63 ~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n 141 (263)
.|.++ .|.. .+++.++++++.+...+ ... +++|++|++++|.++. +|. .+++|++|++++|
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~lp-----~~l---~~~L~~L~Ls~N~l~~-ip~-------~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSSLP-----DNL---PPQITVLEITQNALIS-LPE-------LPASLEYLDACDN 110 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSCCC-----SCC---CTTCSEEECCSSCCSC-CCC-------CCTTCCEEECCSS
T ss_pred hhhhcccccc--CCccEEEeCCCCCCccC-----HhH---cCCCCEEECcCCCCcc-ccc-------ccCCCCEEEccCC
Confidence 68888 6742 46778888888775321 111 2456666666666653 221 1345555555555
Q ss_pred cCCccccccCC------------------CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcC
Q 024731 142 HFNNSIFSSLG------------------GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHN 203 (263)
Q Consensus 142 ~l~~~~p~~l~------------------~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 203 (263)
.+++ +|. +. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +.
T Consensus 111 ~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~--l~- 179 (571)
T 3cvr_A 111 RLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE--LP- 179 (571)
T ss_dssp CCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC--CC-
T ss_pred CCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch--hh-
Confidence 5543 333 33 34445555555555443 332 34455555555555555 333 32
Q ss_pred CCCCcEEEcCCCCCCcccchhhhhcCCCC-------CEEEecCcccccccCc
Q 024731 204 FTNLEELILDDSDLHISQLLQSIASFTSL-------KYLSMGFCTLTGALHG 248 (263)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~p~ 248 (263)
++|++|++++|+++ .+ |. +.. +| +.|++++|+++ .+|.
T Consensus 180 -~~L~~L~Ls~N~L~-~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SL-PA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp -TTCCEEECCSSCCS-SC-CC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred -CCCCEEECcCCCCC-ch-hh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 55666666666665 33 33 332 45 66666666666 4555
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=4.7e-16 Score=121.59 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=94.7
Q ss_pred cEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEE
Q 024731 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185 (263)
Q Consensus 106 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 185 (263)
+.+++++|.++..+.. + .++|++|++++|.++ .+|..|.++++|++|++++|.+++..+. .+..+++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-----~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-----I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSC-----C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCC-----C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEE
Confidence 5677888877654322 2 257888888888887 6677788888888888888887754443 67888888888
Q ss_pred EcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 186 DMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 186 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
+|++|.+++. ++..+..+++|++|++++|+++... +..+..+++|+.|++++|++...
T Consensus 84 ~Ls~N~l~~i-~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 84 ILSYNRLRCI-PPRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp ECCSSCCCBC-CTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECS
T ss_pred ECCCCccCEe-CHHHhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecC
Confidence 8888888774 3434778888888888888887544 55677788888888888887653
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=6e-19 Score=152.42 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=97.5
Q ss_pred cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-----cccccCCCCCCCCEEEcCCCcCC----CCcCc
Q 024731 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-----SIFSSLGGLSSLRNLSLIGNRLI----GSIDI 173 (263)
Q Consensus 103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~p~ 173 (263)
++|++|++++|.++....+.....+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 6777777777776522211111235567788888888888772 23446777888888888888875 44565
Q ss_pred cccCCCCCCCEEEcCCCCCCCC----Cchhhh--cCCCCCcEEEcCCCCCCc----ccchhhh-hcCCCCCEEEecCccc
Q 024731 174 KGLDSLGNLEELDMSDNAINNL----VIPKEL--HNFTNLEELILDDSDLHI----SQLLQSI-ASFTSLKYLSMGFCTL 242 (263)
Q Consensus 174 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~l--~~l~~L~~L~l~~n~l~~----~~~~~~l-~~l~~L~~L~l~~n~l 242 (263)
.+..+++|++|++++|.+++. ++.. + +.+++|++|++++|.+++ .+ +..+ .++++|++|++++|++
T Consensus 239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCLLSARGAAAVVDA-FSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp -HGGGCTTCCEEECTTCCCCHHHHHHHHHH-HHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTTSBS
T ss_pred -HHccCCCcCEEECCCCCCchhhHHHHHHH-HhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccCCcC
Confidence 677788888888888888764 2232 4 337888888888888876 24 5666 5678888888888888
Q ss_pred ccccC
Q 024731 243 TGALH 247 (263)
Q Consensus 243 ~~~~p 247 (263)
++..|
T Consensus 316 ~~~~~ 320 (386)
T 2ca6_A 316 SEEDD 320 (386)
T ss_dssp CTTSH
T ss_pred Ccchh
Confidence 86554
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.1e-16 Score=141.48 Aligned_cols=128 Identities=17% Similarity=0.145 Sum_probs=100.8
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~ 183 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE-------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLE 183 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCC
T ss_pred CCCEEECCCCcCCC-CCC-------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCC
Confidence 66666666666665 221 46789999999999985 665 57899999999999986 775 44 8999
Q ss_pred EEEcCCCCCCCCCchhhhcCCCCC-------cEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHH
Q 024731 184 ELDMSDNAINNLVIPKELHNFTNL-------EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE 256 (263)
Q Consensus 184 ~L~L~~n~l~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~ 256 (263)
+|++++|.++. +|. +.. +| +.|++++|+++ .+ |..+..+++|+.|++++|++++.+|. .+.++..
T Consensus 184 ~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~l-p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~ 255 (571)
T 3cvr_A 184 ALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRCRENRIT-HI-PENILSLDPTCTIILEDNPLSSRIRE-SLSQQTA 255 (571)
T ss_dssp EEECCSSCCSS-CCC--CC----------CCEEEECCSSCCC-CC-CGGGGGSCTTEEEECCSSSCCHHHHH-HHHHHHH
T ss_pred EEECcCCCCCc-hhh--HHH--hhhcccccceEEecCCCcce-ec-CHHHhcCCCCCEEEeeCCcCCCcCHH-HHHHhhc
Confidence 99999999985 655 433 66 99999999998 46 78888899999999999999998887 5555543
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=8.2e-18 Score=145.29 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=132.9
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCC---------CCCCEEEccCCcC
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL---------NNLKFLYLDYNHF 143 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l---------~~L~~L~Ls~n~l 143 (263)
..+++.+++++|.+...+...+ +..+..+++|++|++++|.+++..+......+..+ ++|++|++++|.+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCcccEEECCCCcCCHHHHHHH-HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 3578999999999865433222 33568899999999999998654443322234444 8999999999999
Q ss_pred C-cccc---ccCCCCCCCCEEEcCCCcCCC-----CcCccccCCCCCCCEEEcCCCCCC----CCCchhhhcCCCCCcEE
Q 024731 144 N-NSIF---SSLGGLSSLRNLSLIGNRLIG-----SIDIKGLDSLGNLEELDMSDNAIN----NLVIPKELHNFTNLEEL 210 (263)
Q Consensus 144 ~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L 210 (263)
+ +.++ ..+..+++|++|++++|.+.. ..+. .+..+++|++|+|++|.++ ..++.. +..+++|++|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L 249 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLREL 249 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEE
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH-HhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEE
Confidence 8 4445 467788999999999999872 2332 6778999999999999985 435554 8899999999
Q ss_pred EcCCCCCCccc---chhhhhc--CCCCCEEEecCccccc----ccCc
Q 024731 211 ILDDSDLHISQ---LLQSIAS--FTSLKYLSMGFCTLTG----ALHG 248 (263)
Q Consensus 211 ~l~~n~l~~~~---~~~~l~~--l~~L~~L~l~~n~l~~----~~p~ 248 (263)
++++|.+++.. ++..+.. +++|++|++++|.+++ .+|.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 99999998652 1556643 8999999999999997 3665
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=4.4e-16 Score=137.46 Aligned_cols=143 Identities=18% Similarity=0.160 Sum_probs=93.4
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 153 (263)
.+++.+++++|.+... .++.+++|++|++++|.+++. + +..+++|++|++++|...+.+ .++.
T Consensus 106 ~~L~~L~L~~N~l~~l--------~~~~l~~L~~L~l~~N~l~~l-~------l~~l~~L~~L~l~~n~~~~~~--~~~~ 168 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL--------DVSQNPLLTYLNCARNTLTEI-D------VSHNTQLTELDCHLNKKITKL--DVTP 168 (457)
T ss_dssp TTCCEEECCSSCCSCC--------CCTTCTTCCEEECTTSCCSCC-C------CTTCTTCCEEECTTCSCCCCC--CCTT
T ss_pred CcCCEEECCCCcCCee--------cCCCCCcCCEEECCCCcccee-c------cccCCcCCEEECCCCCccccc--cccc
Confidence 4678899999887531 167788888888888888763 2 566677777777777544444 3566
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 233 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~ 233 (263)
+++|++|++++|.+++ +| +..+++|++|++++|.+++. . ++.+++|++|++++|++++ + | ++.+++|+
T Consensus 169 l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~-i-p--~~~l~~L~ 236 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTE-I-D--VTPLTQLT 236 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSC-C-C--CTTCTTCS
T ss_pred CCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccc-c-C--ccccCCCC
Confidence 6677777777776664 33 45566666666666666653 1 5566666666666666664 3 3 55666666
Q ss_pred EEEecCcccccc
Q 024731 234 YLSMGFCTLTGA 245 (263)
Q Consensus 234 ~L~l~~n~l~~~ 245 (263)
+|++++|++++.
T Consensus 237 ~L~l~~N~l~~~ 248 (457)
T 3bz5_A 237 YFDCSVNPLTEL 248 (457)
T ss_dssp EEECCSSCCSCC
T ss_pred EEEeeCCcCCCc
Confidence 666666666653
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.4e-17 Score=142.66 Aligned_cols=169 Identities=21% Similarity=0.219 Sum_probs=82.6
Q ss_pred cEEEEecCCCCCccccccccccccccCC-cCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCccccccC-
Q 024731 75 RVIKLDLRDTRNWESAEWYMNASLFTPF-QQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSL- 151 (263)
Q Consensus 75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l- 151 (263)
+++.+++++|.+...+...+. ..+... ++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 466666666665432221110 011111 5666666666666554443322223334 566666666666654433322
Q ss_pred ---CC-CCCCCEEEcCCCcCCCCcCc---cccCCCC-CCCEEEcCCCCCCCCCchh---hhcCC-CCCcEEEcCCCCCCc
Q 024731 152 ---GG-LSSLRNLSLIGNRLIGSIDI---KGLDSLG-NLEELDMSDNAINNLVIPK---ELHNF-TNLEELILDDSDLHI 219 (263)
Q Consensus 152 ---~~-l~~L~~L~L~~n~l~~~~p~---~~~~~l~-~L~~L~L~~n~l~~~~~~~---~l~~l-~~L~~L~l~~n~l~~ 219 (263)
.. .++|++|++++|.+.+..+. ..+..++ +|++|++++|.+++..+.. .+..+ ++|++|++++|.+++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 22 24666666666665532111 0223333 6666666666665533221 12333 366666666666654
Q ss_pred cc---chhhhhc-CCCCCEEEecCccccc
Q 024731 220 SQ---LLQSIAS-FTSLKYLSMGFCTLTG 244 (263)
Q Consensus 220 ~~---~~~~l~~-l~~L~~L~l~~n~l~~ 244 (263)
.. ++..+.. .++|++|++++|.+++
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 21 1334444 2366666666666654
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=5.8e-17 Score=138.87 Aligned_cols=169 Identities=19% Similarity=0.183 Sum_probs=125.3
Q ss_pred CCcEEEEecCCCCCccccccccccccccCCc-CCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCcccccc
Q 024731 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSS 150 (263)
Q Consensus 73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~ 150 (263)
...++.+++++|.+...+...+ ...+..++ +|++|++++|.+++..+......+... ++|++|++++|.+++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3458999999999865432111 14567788 899999999999877665433333333 89999999999998766664
Q ss_pred C----CCC-CCCCEEEcCCCcCCCCcCccc----cCC-CCCCCEEEcCCCCCCCCCchh---hhcCCC-CCcEEEcCCCC
Q 024731 151 L----GGL-SSLRNLSLIGNRLIGSIDIKG----LDS-LGNLEELDMSDNAINNLVIPK---ELHNFT-NLEELILDDSD 216 (263)
Q Consensus 151 l----~~l-~~L~~L~L~~n~l~~~~p~~~----~~~-l~~L~~L~L~~n~l~~~~~~~---~l~~l~-~L~~L~l~~n~ 216 (263)
+ ..+ ++|++|++++|.+++..+. . +.. .++|++|++++|.+++..... .+..++ +|++|++++|+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 4 344 8999999999998754332 3 334 369999999999998643322 245565 99999999999
Q ss_pred CCcccchhhh----hcC-CCCCEEEecCccccc
Q 024731 217 LHISQLLQSI----ASF-TSLKYLSMGFCTLTG 244 (263)
Q Consensus 217 l~~~~~~~~l----~~l-~~L~~L~l~~n~l~~ 244 (263)
+++.. +..+ ... ++|++|++++|.+++
T Consensus 179 l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 179 LASKN-CAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred Cchhh-HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 98665 5444 445 599999999999986
No 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=2.5e-15 Score=115.02 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=88.1
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
..+.+++++|.++..+.. + .++|++|+|++|.+++..|..|.++++|++|++++|++++ +|...+..+++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~-----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCcc-----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCC
Confidence 457899999998764332 3 3789999999999998778889999999999999999885 4443678899999
Q ss_pred EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
+|+|++|.+++ +++..+..+++|++|++++|+++..
T Consensus 82 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999999988 4554588899999999999988754
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1.1e-17 Score=147.40 Aligned_cols=142 Identities=22% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC-----CCCCCCEEEcCCCcCCCC----c
Q 024731 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG-----GLSSLRNLSLIGNRLIGS----I 171 (263)
Q Consensus 101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~ 171 (263)
.+++|++|++++|.+++.........+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. +
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 4555666666666554321111112244456666666666666533222222 224666666666666543 2
Q ss_pred CccccCCCCCCCEEEcCCCCCCCCCchhhhcC-----CCCCcEEEcCCCCCCc----ccchhhhhcCCCCCEEEecCccc
Q 024731 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHN-----FTNLEELILDDSDLHI----SQLLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 172 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~~l~~l~~L~~L~l~~n~l 242 (263)
+. .+..+++|++|++++|.+++..+.. +.. .++|++|++++|.+++ .+ +..+..+++|++|++++|++
T Consensus 334 ~~-~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 334 SS-VLAQNRFLLELQISNNRLEDAGVRE-LCQGLGQPGSVLRVLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HH-HHHHCSSCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCCCCCEEECCSSSC
T ss_pred HH-HHhhCCCccEEEccCCccccccHHH-HHHHHcCCCCceEEEECCCCCCChhhHHHH-HHHHHhCCCccEEECCCCCC
Confidence 33 4556677888888888776533322 321 5688888888888875 44 67777888888888888887
Q ss_pred ccc
Q 024731 243 TGA 245 (263)
Q Consensus 243 ~~~ 245 (263)
++.
T Consensus 411 ~~~ 413 (461)
T 1z7x_W 411 GDA 413 (461)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=4.9e-15 Score=113.85 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=86.7
Q ss_pred CcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCE
Q 024731 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184 (263)
Q Consensus 105 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 184 (263)
-+.+++++|.++..+.. + .++|++|+|++|++++..|..|.++++|++|+|++|++++ +|...+..+++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~-----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCC-----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhE
Confidence 36889999988654332 3 3789999999999998778889999999999999999885 55436788999999
Q ss_pred EEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 185 LDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
|+|++|.+++ +++..+..+++|++|++++|++...
T Consensus 86 L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 86 LDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred EECCCCccce-eCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999987 5554588899999999999988743
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=3.1e-15 Score=131.93 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
+|++|++++|.+++ +|. +..+++|++|++++|++++ +|..+ .+|++|++++|.+.+ +| .+..+++|+
T Consensus 132 ~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~ 198 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLT 198 (454)
T ss_dssp TCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCC
T ss_pred CCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCC
Confidence 45555555555543 221 4445555555555555542 33221 244444444444443 33 244444444
Q ss_pred EEEcCCCCCCC
Q 024731 184 ELDMSDNAINN 194 (263)
Q Consensus 184 ~L~L~~n~l~~ 194 (263)
+|++++|.+++
T Consensus 199 ~L~l~~N~l~~ 209 (454)
T 1jl5_A 199 AIYADNNSLKK 209 (454)
T ss_dssp EEECCSSCCSS
T ss_pred EEECCCCcCCc
Confidence 44444444443
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=9.8e-15 Score=133.10 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=61.0
Q ss_pred CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 234 (263)
Q Consensus 155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~ 234 (263)
++|++|++++|.+++ +| ..+++|++|++++|.++. +|. .+++|+.|++++|+++ .+ |..+..+++|+.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~-~l-p~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLT-RL-PESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCC-SC-CGGGGGSCTTCE
T ss_pred CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCC-cC-CHHHhhccccCE
Confidence 445555565555553 33 234667777777777665 443 4577888888888888 55 778889999999
Q ss_pred EEecCcccccccCccchhcHH
Q 024731 235 LSMGFCTLTGALHGQGKLRVS 255 (263)
Q Consensus 235 L~l~~n~l~~~~p~~~l~~L~ 255 (263)
|++++|++++.+|. .+.+++
T Consensus 289 L~L~~N~l~~~~~~-~l~~L~ 308 (622)
T 3g06_A 289 VNLEGNPLSERTLQ-ALREIT 308 (622)
T ss_dssp EECCSCCCCHHHHH-HHHHHH
T ss_pred EEecCCCCCCcCHH-HHHhcc
Confidence 99999999887766 454444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4.6e-15 Score=134.12 Aligned_cols=143 Identities=24% Similarity=0.269 Sum_probs=113.4
Q ss_pred cccCCcCCcEEE-ccCcccCCCCCcc----cccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcC
Q 024731 98 LFTPFQQLESLY-LIGNNIAGCVENE----GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID 172 (263)
Q Consensus 98 ~~~~l~~L~~L~-l~~n~l~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 172 (263)
.++.+++|+.|+ ++.|.+.....-. ....+ ....|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l-~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp 479 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP 479 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhccccccc-CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc
Confidence 456778888888 5655432111000 00001 11359999999999995 676 999999999999999998 788
Q ss_pred ccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 173 IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 173 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
. .++.+++|++|+|++|.+++ +| . ++.+++|+.|++++|++++...|..++.+++|+.|++++|++++.+|.
T Consensus 480 ~-~~~~l~~L~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 480 P-ALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp G-GGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred h-hhhcCCCCCEEECCCCCCCC-Cc-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 7 89999999999999999998 66 4 999999999999999998653378899999999999999999977664
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=1.2e-14 Score=111.26 Aligned_cols=106 Identities=24% Similarity=0.242 Sum_probs=87.0
Q ss_pred EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+.++++++.+.... .. + .++|++|++++|.+++..+.. |..+++|++|+|++|++++..+..|.++++
T Consensus 12 ~~l~~s~n~l~~ip-----~~-~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSGKSLASVP-----TG-I--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTTSCCSSCC-----SC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEeCCCCcCccC-----cc-C--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 36899999886432 22 2 378999999999999887754 888999999999999999776677889999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 195 (263)
|++|++++|++++ +|...+..+++|++|++++|.+...
T Consensus 80 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999885 4443788999999999999999874
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=7.6e-15 Score=129.40 Aligned_cols=82 Identities=26% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCc--ccchhhhhcC----
Q 024731 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHI--SQLLQSIASF---- 229 (263)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~l---- 229 (263)
+|++|++++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ .+ |..++.+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N~l~~l~~i-p~~l~~L~~n~ 386 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPA----LPPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYNPLREFPDI-PESVEDLRMNS 386 (454)
T ss_dssp TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCCCC-CTTCCEEECCC
T ss_pred cCCEEECCCCcccc-ccc----cCCcCCEEECCCCcccc-ccc----hhhhccEEECCCCCCCcCCCC-hHHHHhhhhcc
Confidence 44444444444442 332 13455555555555553 332 24556666666666655 33 4555544
Q ss_pred ---------CCCCEEEecCccccc--ccCc
Q 024731 230 ---------TSLKYLSMGFCTLTG--ALHG 248 (263)
Q Consensus 230 ---------~~L~~L~l~~n~l~~--~~p~ 248 (263)
++|++|++++|++++ .+|.
T Consensus 387 ~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 387 HLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ------------------------------
T ss_pred cccccccccCcCCEEECCCCcCCccccchh
Confidence 556666666666665 4444
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2.4e-15 Score=115.68 Aligned_cols=131 Identities=21% Similarity=0.177 Sum_probs=106.7
Q ss_pred CcEEEEecCCCCCccccccccccccccCCc-CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 152 (263)
..++.+++++|.+... +. +..+. +|++|++++|.+++. + .+..+++|++|++++|.+++..+..+.
T Consensus 19 ~~L~~L~l~~n~l~~i------~~-~~~~~~~L~~L~Ls~N~l~~~-~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI------EN-LGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp TSCEEEECTTSCCCSC------CC-GGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CCceEEEeeCCCCchh------HH-hhhcCCCCCEEECCCCCCCcc-c-----ccccCCCCCEEECCCCcccccCcchhh
Confidence 4688999999988632 22 34444 999999999999875 3 288999999999999999965445558
Q ss_pred CCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCCCCCCCchh---hhcCCCCCcEEEcCCCCCCc
Q 024731 153 GLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPK---ELHNFTNLEELILDDSDLHI 219 (263)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~n~l~~ 219 (263)
.+++|++|++++|.+. .+|. ..+..+++|++|++++|.+.. ++.. .+..+++|+.|++++|....
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999999986 4553 367889999999999999986 4542 37889999999999998753
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=4e-18 Score=133.87 Aligned_cols=133 Identities=26% Similarity=0.305 Sum_probs=97.6
Q ss_pred cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 177 (263)
.+..+++|++|++++|.+++. |. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~~-----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-SS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-CC-----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred HHhcCCCCCEEECCCCCCccc-cc-----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence 567788888888888888763 32 677788888888888887 567666667888888888888775 44 567
Q ss_pred CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchh----------hhhcCCCCCEEEecCcccc
Q 024731 178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ----------SIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----------~l~~l~~L~~L~l~~n~l~ 243 (263)
.+++|++|++++|.+++..+...+..+++|++|++++|++++.. |. .+..+++|+.|| +|.++
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc-ccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77888888888888876322123778888888888888876543 33 367788888776 66665
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=2.3e-14 Score=110.07 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=87.1
Q ss_pred EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (263)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 156 (263)
+.++++++++.... .. + .++|++|++++|.+++..+.. +..+++|++|+|++|++++..+..|.++++
T Consensus 15 ~~l~~~~n~l~~iP-----~~-~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-----AG-I--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCC-----SC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccC-----CC-c--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 46899999885432 22 2 278999999999999887754 889999999999999999765666789999
Q ss_pred CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195 (263)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 195 (263)
|++|++++|++.+ +|...+..+++|++|++++|.+...
T Consensus 83 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhEEECCCCccce-eCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999999985 5543688999999999999999873
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=8.6e-15 Score=133.47 Aligned_cols=67 Identities=24% Similarity=0.180 Sum_probs=45.3
Q ss_pred CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
++|++|++++|.+++ +| ..+++|+.|++++|.++. + |. .+++|++|++++|+++ .+|. .+.++++|.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-l-p~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-L-PM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-C-CC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTC
T ss_pred CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-C-Cc---ccccCcEEeCCCCCCC-cCCH-HHhhccccC
Confidence 556666666666665 43 245677888888887773 4 43 5678888999999888 6776 455555443
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.6e-14 Score=130.60 Aligned_cols=122 Identities=22% Similarity=0.253 Sum_probs=88.4
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
.|+.|++++|.+++. |. +..+++|++|+|++|.++ .+|..++++++|++|++++|.+++ +| .+..+++|+
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred CceEEEecCCCCCCC-cC-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence 577788888877763 32 667778888888888887 677778888888888888888775 55 677788888
Q ss_pred EEEcCCCCCCCCC-chhhhcCCCCCcEEEcCCCCCCcccch---hhhhcCCCCCEEEe
Q 024731 184 ELDMSDNAINNLV-IPKELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSM 237 (263)
Q Consensus 184 ~L~L~~n~l~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l 237 (263)
+|++++|.+++.. |.. ++.+++|+.|++++|++++.. + ..+..+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~-~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS-SCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc-cHHHHHHHHCcccCccCC
Confidence 8888888887744 554 777888888888888876543 2 23445777777764
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=8e-18 Score=132.15 Aligned_cols=143 Identities=24% Similarity=0.232 Sum_probs=117.7
Q ss_pred ccCCcCCcEEEccCcccCCCCCc--ccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc
Q 024731 99 FTPFQQLESLYLIGNNIAGCVEN--EGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 176 (263)
+.....++.++++.+.+.+..|. .....+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence 45566777778888888776654 111237889999999999999996 66 8889999999999999988 5776 67
Q ss_pred CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 177 DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 177 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
..+++|++|++++|.+++ ++ . +..+++|++|++++|++++......+..+++|++|++++|++++.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred hcCCcCCEEECcCCcCCc-CC-c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 778999999999999998 44 4 888999999999999998643125789999999999999999987664
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=3.8e-16 Score=137.57 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=19.0
Q ss_pred CCCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731 204 FTNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 204 l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
+++|++|++++|.+++.. ++..+..+++|++|++++|.++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 445555555555554321 1334444555555555555543
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=2.9e-15 Score=128.74 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=102.9
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC--
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-- 151 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-- 151 (263)
..++.+++++|.+...+...+........++|++|++++|.++....... ...+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 35678888888775332211111111233678888888887754322221 2234577888888888875443333
Q ss_pred ---CCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCc---hhhhcCCCCCcEEEcCCCCCCccc
Q 024731 152 ---GGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVI---PKELHNFTNLEELILDDSDLHISQ 221 (263)
Q Consensus 152 ---~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~ 221 (263)
...++|++|+|++|.++.. ++. .+..+++|++|+|++|.+++... ...+...++|++|++++|.+++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 3457788888888877532 222 44567788888888888765221 112566678888888888887532
Q ss_pred ---chhhhhcCCCCCEEEecCccccc
Q 024731 222 ---LLQSIASFTSLKYLSMGFCTLTG 244 (263)
Q Consensus 222 ---~~~~l~~l~~L~~L~l~~n~l~~ 244 (263)
+...+...++|++|++++|.+++
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 13445567788888888888764
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=4.6e-14 Score=119.21 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=80.9
Q ss_pred CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc-EEEcCCCCCCcccchhhhhcCCCC
Q 024731 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE-ELILDDSDLHISQLLQSIASFTSL 232 (263)
Q Consensus 154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~l~~l~~L 232 (263)
+++|+++++++|+++ .+|...|.++++|+.+++.+| ++. ++...|.++++|+ .+++.+ .++... +.+|..+++|
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccC
Confidence 678999999999877 677778999999999999998 655 6666799999999 999988 676444 7889999999
Q ss_pred CEEEecCcccccccCccchhcHHHHH
Q 024731 233 KYLSMGFCTLTGALHGQGKLRVSEAF 258 (263)
Q Consensus 233 ~~L~l~~n~l~~~~p~~~l~~L~~L~ 258 (263)
+.++++.|.++ .|+...|.++++|.
T Consensus 300 ~~l~l~~n~i~-~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 300 RYVLATGDKIT-TLGDELFGNGVPSK 324 (329)
T ss_dssp EEEEECSSCCC-EECTTTTCTTCCCC
T ss_pred CEEEeCCCccC-ccchhhhcCCcchh
Confidence 99999999998 56664666555444
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=4.2e-13 Score=114.26 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=109.0
Q ss_pred EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccc-cCCCCCC
Q 024731 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSS 156 (263)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~ 156 (263)
.++-++++++..+ .. + .+++++|++++|+|+...+. .|.++++|++|+|++|++.+.+|. .|.++++
T Consensus 13 ~v~C~~~~Lt~iP-----~~-l--~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 13 VFLCQESKVTEIP-----SD-L--PRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp EEEEESTTCCSCC-----TT-C--CTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred EEEecCCCCCccC-----cC-c--CCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 4667777775432 22 2 35799999999999876554 389999999999999999766664 6788988
Q ss_pred CCE-EEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC--------------------------CCcE
Q 024731 157 LRN-LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT--------------------------NLEE 209 (263)
Q Consensus 157 L~~-L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~--------------------------~L~~ 209 (263)
+++ +.+..|++....|. .+..+++|++|++++|.+... +...+.... .++.
T Consensus 81 l~~~l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp CCEEEEEEETTCCEECTT-SBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhcccCCcccccCch-hhhhccccccccccccccccC-Cchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 876 56677888754444 899999999999999998763 221122222 3556
Q ss_pred EEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257 (263)
Q Consensus 210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L 257 (263)
|++++|+++ .+ +.......+|+++++++|+.-+.+|...+.++++|
T Consensus 159 L~L~~N~i~-~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 159 LWLNKNGIQ-EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp EECCSSCCC-EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred hcccccccc-CC-ChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 666666665 23 33333455666777664332335665334444333
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=7.8e-13 Score=112.31 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=79.8
Q ss_pred EEecCCC-CCccccccccccccccCCcCCcEEEccC-cccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCC
Q 024731 78 KLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (263)
Q Consensus 78 ~l~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 155 (263)
.++.+++ ++.. + +. +..+++|++|+|++ |.+.+..+.. |..+++|++|+|++|++++..|..|.+++
T Consensus 12 ~v~~~~~n~l~~-----i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDS-----L-HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTT-----T-TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCc-----c-CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence 3577777 6643 2 23 77788889999986 8888766543 78888899999999998887777888888
Q ss_pred CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195 (263)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 195 (263)
+|++|+|++|++++ +|...+..++ |++|+|.+|.+...
T Consensus 81 ~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 81 RLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999999998874 4543555554 88888888888753
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.2e-12 Score=111.20 Aligned_cols=106 Identities=26% Similarity=0.388 Sum_probs=83.9
Q ss_pred cEEEccCc-ccCCCCCcccccccCCCCCCCEEEccC-CcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731 106 ESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (263)
Q Consensus 106 ~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 183 (263)
..++.+++ ++++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|. .|..+++|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCC
Confidence 45688887 7765 342 67788899999986 999877777889999999999999998876555 788899999
Q ss_pred EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS 220 (263)
Q Consensus 184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 220 (263)
+|+|++|.+++ +|+..+..++ |+.|++.+|.+...
T Consensus 84 ~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 84 RLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EEeCCCCccce-eCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999999987 5555455555 99999999988743
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=1.3e-13 Score=125.00 Aligned_cols=140 Identities=16% Similarity=0.067 Sum_probs=87.4
Q ss_pred CcCCcEEEccCcccCCCCCcccccccC-CCCCCCEEEcc----CCcCCcc-----ccccCCCCCCCCEEEcCCCc--CCC
Q 024731 102 FQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLD----YNHFNNS-----IFSSLGGLSSLRNLSLIGNR--LIG 169 (263)
Q Consensus 102 l~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~n~--l~~ 169 (263)
+++|++|+++.|.+++..... +. .+++|++|+++ .|.+++. ++..+.++++|++|++++|. +++
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLES----IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHH----HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred CccCeEEEeecCCccHHHHHH----HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 455555555555544322221 22 25566666664 4555532 23334556677777776433 333
Q ss_pred CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245 (263)
Q Consensus 170 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 245 (263)
..+......+++|++|++++|.+++......+..+++|++|++++|.+++..++..+..+++|++|++++|++++.
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3222122347889999999998876433443678899999999999987665355567889999999999998754
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.6e-13 Score=117.83 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=115.2
Q ss_pred CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCccccccc-CCCCCCCEEEccCCcCCcc----cc
Q 024731 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNS----IF 148 (263)
Q Consensus 74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~p 148 (263)
..++.+++++|.+...+.. .....+++|++|++++|.++..........+ ...++|++|+|++|.+++. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 5899999999998644331 2234467899999999999755433322223 4578999999999999753 44
Q ss_pred ccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCccc
Q 024731 149 SSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHISQ 221 (263)
Q Consensus 149 ~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~ 221 (263)
..+...++|++|+|++|.+.+. ++. .+...++|++|+|++|.+++.... ..+...++|++|++++|.+++..
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 5557889999999999998642 233 566778999999999999763211 12556789999999999998765
Q ss_pred chhhhhcCCC-----CCEEE--ecCcccc
Q 024731 222 LLQSIASFTS-----LKYLS--MGFCTLT 243 (263)
Q Consensus 222 ~~~~l~~l~~-----L~~L~--l~~n~l~ 243 (263)
...+..+.. |+.+. +..|.++
T Consensus 256 -~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 256 -RQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp -HHHHHHCC------CEEECCCC----CH
T ss_pred -HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 556655432 55666 5666654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=4.1e-11 Score=101.03 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=89.2
Q ss_pred CCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC-EEEcCCCCCCCCCchhhhcCCCCCc
Q 024731 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE-ELDMSDNAINNLVIPKELHNFTNLE 208 (263)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~~L~ 208 (263)
+++|+++++++|+++...+..|.++.+|+.+++.+| +. .++...|.++++|+ .+++.+ .++. ++...|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCC
Confidence 689999999999999666668999999999999998 54 57777999999999 999998 6666 5555699999999
Q ss_pred EEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731 209 ELILDDSDLHISQLLQSIASFTSLKYLSM 237 (263)
Q Consensus 209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l 237 (263)
.+++..|.++... +.+|.++++|+.++.
T Consensus 301 ~l~l~~n~i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence 9999999998555 779999999999874
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=1.2e-12 Score=118.74 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=48.2
Q ss_pred EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCC----ccccccC
Q 024731 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN----NSIFSSL 151 (263)
Q Consensus 76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l 151 (263)
++.++++++... ....+ ......+++|++|++++|.+++.........+..+++|++|++++|.++ +.++..+
T Consensus 140 L~~L~L~~~~~~--~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 140 LETLKLDKCSGF--TTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp CCEEEEESCEEE--EHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred CcEEECcCCCCc--CHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 777777766411 10000 1123456777777777777654422111112345666777777766665 2334444
Q ss_pred CCCCCCCEEEcCCCcCC
Q 024731 152 GGLSSLRNLSLIGNRLI 168 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~ 168 (263)
.++++|++|++++|.+.
T Consensus 217 ~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHCTTCCEEECSSCBGG
T ss_pred hhCCCCcEEeccCccHH
Confidence 55666666666666554
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=6.2e-11 Score=107.37 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=19.3
Q ss_pred CCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCc
Q 024731 204 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240 (263)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 240 (263)
+++|++|++++|.+++..+...+..+++|++|++++|
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4556666666666544332223445555555555555
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.04 E-value=2.3e-12 Score=105.07 Aligned_cols=80 Identities=28% Similarity=0.327 Sum_probs=59.0
Q ss_pred CCCCCCCEEEcCCCcCCC--CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC--CCcEEEcCCCCCCcccch----
Q 024731 152 GGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT--NLEELILDDSDLHISQLL---- 223 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~---- 223 (263)
.++++|++|+|++|.+++ .+|. .+..+++|++|+|++|.+++. .. +..+. +|++|++++|.+.+.. |
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~l~L~~L~L~~Npl~~~~-~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RE-LDKIKGLKLEELWLDGNSLCDTF-RDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GG-GGGGTTSCCSEEECTTSTTGGGC-SSHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hh-hhhcccCCcceEEccCCcCcccc-Ccchh
Confidence 457788888888888876 3444 556788899999999988874 22 33344 8899999999987643 2
Q ss_pred ---hhhhcCCCCCEEE
Q 024731 224 ---QSIASFTSLKYLS 236 (263)
Q Consensus 224 ---~~l~~l~~L~~L~ 236 (263)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 3467888988876
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=9e-12 Score=112.90 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCCCCCCEEEcCCCcCCCCcCccccCC-CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCC
Q 024731 152 GGLSSLRNLSLIGNRLIGSIDIKGLDS-LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFT 230 (263)
Q Consensus 152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~ 230 (263)
..+++|++|++++ .+++..+. .+.. +++|++|++++|.+++..+......+++|++|++++|.+++.........++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHH-HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHH-HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 3445555555544 33322221 2222 5566666666666654333321245666666666666665433122334466
Q ss_pred CCCEEEecCccc
Q 024731 231 SLKYLSMGFCTL 242 (263)
Q Consensus 231 ~L~~L~l~~n~l 242 (263)
+|++|++++|++
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 666666666665
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=2.5e-10 Score=88.28 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=72.7
Q ss_pred cCCCCCCCEEEccCC-cCCcc----ccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCc
Q 024731 127 LSRLNNLKFLYLDYN-HFNNS----IFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVI 197 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~ 197 (263)
+...++|++|+|++| .+... +...+...++|++|+|++|.+... +.. .+...++|++|+|++|.+.....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHH
Confidence 455566666666666 55532 233445556666677766665432 122 34455677888888887765311
Q ss_pred ---hhhhcCCCCCcEEEc--CCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731 198 ---PKELHNFTNLEELIL--DDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 198 ---~~~l~~l~~L~~L~l--~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
...+...++|++|++ ++|.+.... +.+.+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 122566778888888 778887543 1345666788999999999875
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=1.4e-10 Score=89.62 Aligned_cols=120 Identities=20% Similarity=0.125 Sum_probs=89.9
Q ss_pred cccCCcCCcEEEccCc-ccCCCCCcccccccCCCCCCCEEEccCCcCCcc----ccccCCCCCCCCEEEcCCCcCCCC--
Q 024731 98 LFTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS-- 170 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-- 170 (263)
.+...+.|++|++++| .+...........+...++|++|+|++|.+++. +...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567788999999998 887544333445577888999999999999853 334455668899999999998643
Q ss_pred --cCccccCCCCCCCEEEc--CCCCCCCCCc---hhhhcCCCCCcEEEcCCCCCC
Q 024731 171 --IDIKGLDSLGNLEELDM--SDNAINNLVI---PKELHNFTNLEELILDDSDLH 218 (263)
Q Consensus 171 --~p~~~~~~l~~L~~L~L--~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~l~ 218 (263)
+.. .+...++|++|+| ++|.+..... ...+...++|++|++++|.+.
T Consensus 111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233 6677889999999 8899876421 123566789999999999885
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=5.9e-09 Score=90.23 Aligned_cols=150 Identities=12% Similarity=0.133 Sum_probs=82.6
Q ss_pred cccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCC--------
Q 024731 94 MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN-------- 165 (263)
Q Consensus 94 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-------- 165 (263)
+....|..+++|+.+++++|.++...... |. ..+|+.+.+..+ ++......|.++++|+.+++..+
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a 244 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA 244 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccc
Confidence 34456777888888888877665433321 33 345555555532 33333344555555555555433
Q ss_pred -------------cCCCCcCccccCCCCCCCEEEcCCCCCC----CCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhc
Q 024731 166 -------------RLIGSIDIKGLDSLGNLEELDMSDNAIN----NLVIPKELHNFTNLEELILDDSDLHISQLLQSIAS 228 (263)
Q Consensus 166 -------------~l~~~~p~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 228 (263)
.+. .++...|..+++|+.+++.+|.+. ..++...|..+++|+.+++.. .++... ..+|..
T Consensus 245 F~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~-~~aF~~ 321 (401)
T 4fdw_A 245 FRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG-QGLLGG 321 (401)
T ss_dssp TTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-TTTTTT
T ss_pred cccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-hhhhcC
Confidence 122 233446666777777777666553 113344466777777777763 354333 556777
Q ss_pred CCCCCEEEecCcccccccCccchhcH
Q 024731 229 FTSLKYLSMGFCTLTGALHGQGKLRV 254 (263)
Q Consensus 229 l~~L~~L~l~~n~l~~~~p~~~l~~L 254 (263)
+++|+.+++..| ++ .|+...|.++
T Consensus 322 c~~L~~l~lp~~-l~-~I~~~aF~~~ 345 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VT-QINFSAFNNT 345 (401)
T ss_dssp CCSCCEEEECTT-CC-EECTTSSSSS
T ss_pred CCCccEEEECcc-cc-EEcHHhCCCC
Confidence 777777777544 44 4544344433
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.9e-09 Score=91.94 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=92.7
Q ss_pred cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC--CCCCCCEEEcCC--CcCCCC---
Q 024731 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG--GLSSLRNLSLIG--NRLIGS--- 170 (263)
Q Consensus 98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~--- 170 (263)
.+..+++|+.|++++|.-. ..+. +. +++|++|++..+.++......+. .+++|++|+|+. |...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-----~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-----KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-----CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-----cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 4567789999999887311 1121 32 78899999998888754444443 689999999853 222111
Q ss_pred --cCcccc--CCCCCCCEEEcCCCCCCCCCchhhh--cCCCCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCcc
Q 024731 171 --IDIKGL--DSLGNLEELDMSDNAINNLVIPKEL--HNFTNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCT 241 (263)
Q Consensus 171 --~p~~~~--~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~ 241 (263)
+.. .+ ..+++|++|++.+|.+.+..+.... ..+++|++|+++.|.+.+.. ++..+..+++|+.|++++|.
T Consensus 240 ~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 240 NVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111 22 3578999999999988753322211 25788999999999987643 13344567899999999998
Q ss_pred ccc
Q 024731 242 LTG 244 (263)
Q Consensus 242 l~~ 244 (263)
++.
T Consensus 319 i~d 321 (362)
T 2ra8_A 319 LSD 321 (362)
T ss_dssp CCH
T ss_pred CCH
Confidence 763
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=3.6e-08 Score=85.30 Aligned_cols=140 Identities=12% Similarity=0.139 Sum_probs=96.8
Q ss_pred cccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC----CCc
Q 024731 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI----GSI 171 (263)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----~~~ 171 (263)
...|..+++|+.+++..+ ++..... .|.+ .+|+.+.+. +.++......|.++++|+.+++.+|.+. ..+
T Consensus 219 ~~aF~~~~~L~~l~l~~~-l~~I~~~----aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 219 SQAFLKTSQLKTIEIPEN-VSTIGQE----AFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTTTTTCTTCCCEECCTT-CCEECTT----TTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred hhHhhCCCCCCEEecCCC-ccCcccc----cccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 344566666666666553 3222221 2444 567777773 4455444668889999999999888754 135
Q ss_pred CccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731 172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 248 (263)
Q Consensus 172 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 248 (263)
+...|.++++|+.+++.+ .++. ++...|.++++|+.+.+..| ++... ..+|..+ +|+.+++++|.+. .++.
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n~~~-~l~~ 362 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGTTPP-QVFE 362 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCSSCC-BCCC
T ss_pred CHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCCCCc-cccc
Confidence 666889999999999984 4655 55556899999999999665 55333 6788889 9999999998876 3443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=2.1e-09 Score=91.70 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=93.8
Q ss_pred ccCCcCCcEEEccCcccCCC----C-CcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCc
Q 024731 99 FTPFQQLESLYLIGNNIAGC----V-ENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI 173 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~----~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 173 (263)
...+++|+.|.+..+..... . .......+..+|+|+.|++++|.-. .++. + .+++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 45788999999976543210 0 0111123567899999999988322 2333 3 388999999999887543221
Q ss_pred ccc--CCCCCCCEEEcCC--CCCCCCC-c---hhhh--cCCCCCcEEEcCCCCCCcccchhhhh---cCCCCCEEEecCc
Q 024731 174 KGL--DSLGNLEELDMSD--NAINNLV-I---PKEL--HNFTNLEELILDDSDLHISQLLQSIA---SFTSLKYLSMGFC 240 (263)
Q Consensus 174 ~~~--~~l~~L~~L~L~~--n~l~~~~-~---~~~l--~~l~~L~~L~l~~n~l~~~~~~~~l~---~l~~L~~L~l~~n 240 (263)
.+ ..+++|++|+|+. |...+.. . ...+ ..+++|++|++.+|.+.+.. +..+. .+++|++|+|+.|
T Consensus 212 -~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 212 -DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp -HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSS
T ss_pred -HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCC
Confidence 23 3789999999863 2222211 0 0112 35799999999999997654 44444 5789999999999
Q ss_pred ccccc
Q 024731 241 TLTGA 245 (263)
Q Consensus 241 ~l~~~ 245 (263)
.+++.
T Consensus 290 ~L~d~ 294 (362)
T 2ra8_A 290 VLTDE 294 (362)
T ss_dssp CCBHH
T ss_pred CCChH
Confidence 99864
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=3e-08 Score=80.69 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCCCCCCEEEccCCcCCc--cccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch------h
Q 024731 128 SRLNNLKFLYLDYNHFNN--SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP------K 199 (263)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~------~ 199 (263)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|.+.+.-....+..+ +|++|+|++|.+.+.+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 468899999999999997 4556677899999999999999864222234444 999999999999875542 2
Q ss_pred hhcCCCCCcEEEc
Q 024731 200 ELHNFTNLEELIL 212 (263)
Q Consensus 200 ~l~~l~~L~~L~l 212 (263)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678899998863
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=8.5e-08 Score=72.85 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCc-CCCCcCccccCCC----CCCCEEEcCCCC-CCCCCchhhhcCC
Q 024731 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSL----GNLEELDMSDNA-INNLVIPKELHNF 204 (263)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~l~~l 204 (263)
.+|++||++++.++...-..+.++++|++|+|++|. +++.-- ..+..+ ++|++|++++|. +++..... +.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcC
Confidence 467888888888776555666777777777777775 332111 133332 356777777664 55433332 5566
Q ss_pred CCCcEEEcCCCC
Q 024731 205 TNLEELILDDSD 216 (263)
Q Consensus 205 ~~L~~L~l~~n~ 216 (263)
++|++|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 677777776664
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=1.3e-07 Score=71.86 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=41.1
Q ss_pred CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCccccccCCCC----CCCCEEEcCCCc-CCCCcCccccC
Q 024731 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGL----SSLRNLSLIGNR-LIGSIDIKGLD 177 (263)
Q Consensus 104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~ 177 (263)
+|+.||++++.++.. ....+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++..-- ..+.
T Consensus 62 ~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred eEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 456666666554422 12234556666666666653 454333344443 246666666654 332211 1344
Q ss_pred CCCCCCEEEcCCCC
Q 024731 178 SLGNLEELDMSDNA 191 (263)
Q Consensus 178 ~l~~L~~L~L~~n~ 191 (263)
.+++|++|+++++.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 55666666666554
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=2.1e-05 Score=67.54 Aligned_cols=108 Identities=9% Similarity=0.147 Sum_probs=56.6
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 206 (263)
|..+.+|+.+.+..+..+ .....|.+++.|+.+.+..+ +. .++...|.++.+|+.+++..+ ++. +....|.++++
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTT
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCC
Confidence 555666666666544322 33345556666666666432 22 344445666666666666543 332 33334666666
Q ss_pred CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcc
Q 024731 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 241 (263)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 241 (263)
|+.+.+..+ ++... ..+|.++++|+.+++.++.
T Consensus 336 L~~i~ip~s-v~~I~-~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIP-ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCC-GGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEh-HhHhhCCCCCCEEEECCce
Confidence 666666443 33222 4456666666666666554
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.04 E-value=1.2e-06 Score=67.78 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCCCCCEEEccCC-cCCc----cccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch-
Q 024731 129 RLNNLKFLYLDYN-HFNN----SIFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP- 198 (263)
Q Consensus 129 ~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~- 198 (263)
+-+.|++|+|++| .+.. .+.+.+..-..|+.|+|++|.+... +.. .+..-++|++|+|++|.|......
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHHHHH
Confidence 3444444555443 4432 1223333444555555555554321 111 333445666666666666542111
Q ss_pred --hhhcCCCCCcEEEcCCC---CCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731 199 --KELHNFTNLEELILDDS---DLHISQ---LLQSIASFTSLKYLSMGFCTLT 243 (263)
Q Consensus 199 --~~l~~l~~L~~L~l~~n---~l~~~~---~~~~l~~l~~L~~L~l~~n~l~ 243 (263)
..+...+.|++|+|++| .+.... +.+.+..-+.|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 12445566777777654 333221 1345566677888888776653
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.99 E-value=4.7e-06 Score=64.41 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=85.6
Q ss_pred ccCCcCCcEEEccCc-ccCCCCCcccccccCCCCCCCEEEccCCcCCccccc----cCCCCCCCCEEEcCCCcCCCC---
Q 024731 99 FTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----SLGGLSSLRNLSLIGNRLIGS--- 170 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~--- 170 (263)
+..-+.|++|+|++| .+.......+...+..-..|++|+|++|.+.+.... .+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456688999999986 776443334455678889999999999999854333 344568999999999998643
Q ss_pred -cCccccCCCCCCCEEEcCCCC---CCCCC---chhhhcCCCCCcEEEcCCCCCC
Q 024731 171 -IDIKGLDSLGNLEELDMSDNA---INNLV---IPKELHNFTNLEELILDDSDLH 218 (263)
Q Consensus 171 -~p~~~~~~l~~L~~L~L~~n~---l~~~~---~~~~l~~l~~L~~L~l~~n~l~ 218 (263)
+.. .+..-+.|++|+|++|. +.... ....+...+.|+.|+++.|.+.
T Consensus 117 ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 222 56667789999998763 33211 1123666789999999988653
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.00011 Score=62.54 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=82.9
Q ss_pred ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (263)
Q Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 178 (263)
+.....++.+.+..+ +..... ..+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +. .++...+..
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~----~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGD----GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSG 284 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECT----TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred cccccccceeeeccc-eeEEcc----ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccc
Confidence 445556666666443 211111 23667777888887665 44344556777778888887654 22 355557777
Q ss_pred CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCc
Q 024731 179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240 (263)
Q Consensus 179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 240 (263)
+.+|+.+.+.++.++. +....|.++.+|+.+.+..+ ++... ..+|.++++|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc
Confidence 8888888887777765 44445788888888888654 44222 556777888887777544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.84 E-value=0.00012 Score=62.75 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=71.3
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 206 (263)
+..+..++.+....+.+. ...|..+.+|+.+.+..+ +. .++...|.++.+|+.+++..+ ++. +....|.++++
T Consensus 272 F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~ 344 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTS 344 (394)
T ss_dssp TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTT
T ss_pred cccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCC
Confidence 455555555555444322 235667788888888665 33 455557888888999888654 544 44555888889
Q ss_pred CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCc
Q 024731 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240 (263)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n 240 (263)
|+.+.+..+ ++... ..+|.++++|+.+++..+
T Consensus 345 L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 345 LSNINFPLS-LRKIG-ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTT-CCEEC-TTTBTTCTTCCEEEEEGG
T ss_pred CCEEEECcc-ccEeh-HHHhhCCCCCCEEEECCC
Confidence 999988776 55333 667888899999988755
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.00011 Score=63.04 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=81.4
Q ss_pred cccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccc
Q 024731 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (263)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 175 (263)
...|..+..|+.+.+..+... +.. ..|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++ .+....
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~--I~~---~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a 329 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS--IGT---GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDA 329 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE--ECT---TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred cceeeecccccEEecccccce--ecC---cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhH
Confidence 345667777777777654321 111 237778888888886 3455344557788888888888765 33 455557
Q ss_pred cCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731 176 LDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242 (263)
Q Consensus 176 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l 242 (263)
|.++.+|+.+.+..+ ++. +....|.++++|+.+++.++... ...+....+|+.+.+..|.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCE
Confidence 888888888888654 544 45556888888888888876432 34566677788777766544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.00022 Score=60.74 Aligned_cols=125 Identities=11% Similarity=0.148 Sum_probs=91.9
Q ss_pred cccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccc
Q 024731 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (263)
Q Consensus 96 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 175 (263)
...+..+..|+.+.+..+ ++..... .+.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.+. .++...
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~a 305 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRV 305 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTT
T ss_pred cccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhh
Confidence 445778889999998765 4332222 3788999999999754 55344567889999999999988776 466668
Q ss_pred cCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731 176 LDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS 231 (263)
Q Consensus 176 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~ 231 (263)
|.++.+|+.+.+..+ ++. +....|.++++|+.+.+..+ ++... ..+|.+++.
T Consensus 306 F~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~-v~~I~-~~aF~~c~~ 357 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS-ITLIE-SGAFEGSSI 357 (379)
T ss_dssp TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT-CCEEC-TTTTTTSSC
T ss_pred hcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc-cCEEc-hhHhhCCCC
Confidence 999999999999755 544 44556999999999999765 54222 556766643
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.64 E-value=0.00033 Score=60.09 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=78.2
Q ss_pred ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731 126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205 (263)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 205 (263)
.+..+.+|+.+.+..+ ++......|.++.+|+.+++..+ ++ .++...|.++.+|+.+++..+ ++. +....|.+++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCC
Confidence 3778899999999765 55445668999999999999765 44 566668999999999999876 554 5555699999
Q ss_pred CCcEEEcCCCCCCcccchhhhhcCCCCCEE
Q 024731 206 NLEELILDDSDLHISQLLQSIASFTSLKYL 235 (263)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L 235 (263)
+|+.+++..+ ++ .+ ...+.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GG-GGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-Eh-hheecCCCCCcEE
Confidence 9999999764 32 23 4567788887764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.0014 Score=47.00 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=44.7
Q ss_pred CEEEcCCCcCC-CCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731 158 RNLSLIGNRLI-GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218 (263)
Q Consensus 158 ~~L~L~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~ 218 (263)
..++-+++.++ ..+|. .+ -++|++|+|++|.|+. ++...|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~l--p~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AF--PVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CC--CTTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC-CC--CcCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence 47788888876 24664 32 2469999999999988 66666888999999999999885
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.03 E-value=0.0018 Score=46.48 Aligned_cols=36 Identities=25% Similarity=0.160 Sum_probs=16.9
Q ss_pred CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcC
Q 024731 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167 (263)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 167 (263)
+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555433333344444555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.67 E-value=25 Score=23.16 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=6.3
Q ss_pred ccCCCCCCCEEEcC
Q 024731 175 GLDSLGNLEELDMS 188 (263)
Q Consensus 175 ~~~~l~~L~~L~L~ 188 (263)
.|.++.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 44444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.51 E-value=46 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=17.8
Q ss_pred cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCC
Q 024731 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164 (263)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 164 (263)
|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 445555555555443 2223334555555555555544
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.01 E-value=34 Score=15.32 Aligned_cols=10 Identities=30% Similarity=1.059 Sum_probs=7.0
Q ss_pred CCCCCCCceE
Q 024731 59 SDCCQWERVE 68 (263)
Q Consensus 59 ~~~c~w~gv~ 68 (263)
...|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3568998864
Done!