Query 024732
Match_columns 263
No_of_seqs 123 out of 1269
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 4.8E-41 1E-45 307.3 14.8 232 25-261 34-268 (437)
2 PTZ00206 amino acid transporte 100.0 6.9E-36 1.5E-40 278.6 20.6 222 26-253 57-288 (467)
3 PF01490 Aa_trans: Transmembra 100.0 2.2E-34 4.8E-39 263.9 0.1 223 27-254 1-225 (409)
4 KOG1304 Amino acid transporter 100.0 1.6E-31 3.6E-36 241.8 17.5 219 26-254 44-274 (449)
5 PLN03074 auxin influx permease 100.0 6.4E-31 1.4E-35 244.8 19.8 219 26-258 43-270 (473)
6 KOG4303 Vesicular inhibitory a 99.9 7.2E-28 1.6E-32 208.3 3.1 218 26-254 114-335 (524)
7 KOG1305 Amino acid transporter 99.9 5.9E-27 1.3E-31 213.5 9.1 215 27-252 4-225 (411)
8 COG0814 SdaC Amino acid permea 99.9 8E-25 1.7E-29 201.1 18.6 218 25-252 5-224 (415)
9 PRK10483 tryptophan permease; 99.8 3.8E-17 8.3E-22 149.0 19.5 219 26-259 8-231 (414)
10 PRK09664 tryptophan permease T 99.7 2.7E-16 5.9E-21 143.3 20.0 220 27-257 7-230 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.7 6.6E-16 1.4E-20 141.3 20.9 218 28-259 2-223 (394)
12 PRK15132 tyrosine transporter 99.7 4.5E-15 9.9E-20 135.7 20.2 214 29-259 3-220 (403)
13 TIGR00837 araaP aromatic amino 99.6 7.2E-15 1.6E-19 134.0 16.0 212 35-258 3-216 (381)
14 PRK13629 threonine/serine tran 99.5 2.5E-12 5.5E-17 117.8 20.9 205 36-250 26-238 (443)
15 TIGR00814 stp serine transport 99.4 7.6E-11 1.6E-15 108.0 20.2 200 35-244 9-209 (397)
16 PRK10655 potE putrescine trans 98.9 2.5E-07 5.3E-12 86.0 21.9 214 26-252 5-220 (438)
17 PRK10435 cadB lysine/cadaverin 98.9 3.8E-07 8.2E-12 84.8 20.7 214 26-252 4-218 (435)
18 TIGR01773 GABAperm gamma-amino 98.9 6.8E-07 1.5E-11 83.5 21.4 214 25-252 10-232 (452)
19 KOG3832 Predicted amino acid t 98.8 6.3E-08 1.4E-12 79.4 11.8 212 32-251 15-303 (319)
20 TIGR00905 2A0302 transporter, 98.8 9E-07 1.9E-11 83.2 20.9 227 26-259 6-237 (473)
21 PRK11021 putative transporter; 98.8 9.3E-07 2E-11 81.5 20.6 205 30-252 2-208 (410)
22 PRK11387 S-methylmethionine tr 98.8 2.1E-06 4.5E-11 80.7 22.4 217 25-253 12-238 (471)
23 PRK10644 arginine:agmatin anti 98.8 2E-06 4.4E-11 80.1 21.9 214 25-252 6-222 (445)
24 TIGR00912 2A0309 spore germina 98.8 5.1E-07 1.1E-11 81.7 17.3 212 29-259 3-217 (359)
25 PRK11049 D-alanine/D-serine/gl 98.8 2.3E-06 4.9E-11 80.4 22.2 226 15-253 8-243 (469)
26 TIGR00909 2A0306 amino acid tr 98.8 9.6E-07 2.1E-11 81.8 18.9 219 26-257 2-232 (429)
27 PRK10249 phenylalanine transpo 98.8 2.9E-06 6.3E-11 79.5 22.2 216 25-253 19-241 (458)
28 TIGR00906 2A0303 cationic amin 98.7 2.2E-06 4.8E-11 82.2 19.8 222 25-252 26-262 (557)
29 PRK10238 aromatic amino acid t 98.7 6.6E-06 1.4E-10 77.0 22.0 215 25-252 10-231 (456)
30 PRK10746 putative transport pr 98.6 1.2E-05 2.5E-10 75.5 22.7 215 25-253 8-232 (461)
31 TIGR03810 arg_ornith_anti argi 98.6 1E-05 2.2E-10 76.0 21.0 225 27-258 1-232 (468)
32 PRK10836 lysine transporter; P 98.6 2.2E-05 4.8E-10 74.2 23.3 91 25-120 13-104 (489)
33 PF13520 AA_permease_2: Amino 98.6 2.3E-06 5E-11 79.0 15.5 218 30-260 2-226 (426)
34 TIGR00913 2A0310 amino acid pe 98.6 1.6E-05 3.4E-10 74.8 21.3 216 26-252 1-228 (478)
35 PRK15049 L-asparagine permease 98.6 1.7E-05 3.6E-10 75.2 21.5 92 25-122 26-118 (499)
36 TIGR00908 2A0305 ethanolamine 98.6 1.1E-05 2.4E-10 75.1 19.8 215 25-252 5-222 (442)
37 PRK10580 proY putative proline 98.5 4.2E-05 9E-10 71.6 23.5 216 25-253 7-231 (457)
38 TIGR00911 2A0308 L-type amino 98.4 3.2E-05 6.9E-10 73.3 20.0 219 25-252 40-266 (501)
39 PF03845 Spore_permease: Spore 98.4 5.8E-05 1.3E-09 67.3 19.9 209 29-258 2-212 (320)
40 PRK11357 frlA putative fructos 98.4 4.7E-05 1E-09 71.0 19.6 216 25-253 6-227 (445)
41 TIGR00930 2a30 K-Cl cotranspor 98.3 2.2E-05 4.7E-10 79.5 17.1 220 27-252 76-311 (953)
42 PRK10197 gamma-aminobutyrate t 98.3 0.00013 2.9E-09 68.1 20.1 203 39-254 4-214 (446)
43 KOG1287 Amino acid transporter 98.3 2.1E-05 4.5E-10 73.0 13.3 219 25-253 10-236 (479)
44 COG0531 PotE Amino acid transp 98.2 0.00021 4.5E-09 66.5 20.2 219 26-253 11-233 (466)
45 TIGR03428 ureacarb_perm permea 98.2 0.00068 1.5E-08 63.8 22.7 220 25-252 11-244 (475)
46 COG1113 AnsP Gamma-aminobutyra 98.1 0.00083 1.8E-08 61.8 20.0 217 25-254 11-236 (462)
47 PRK15238 inner membrane transp 97.7 0.011 2.3E-07 56.0 21.5 79 26-111 6-86 (496)
48 COG3949 Uncharacterized membra 97.6 0.00075 1.6E-08 59.6 11.4 132 34-179 8-142 (349)
49 TIGR00907 2A0304 amino acid pe 97.6 0.0078 1.7E-07 56.7 19.3 111 25-140 10-126 (482)
50 COG0833 LysP Amino acid transp 97.6 0.0041 8.9E-08 58.5 15.9 217 25-252 42-265 (541)
51 TIGR00800 ncs1 NCS1 nucleoside 97.5 0.035 7.5E-07 51.9 21.4 159 95-256 76-243 (442)
52 TIGR00910 2A0307_GadC glutamat 97.5 0.016 3.4E-07 55.2 18.9 82 26-117 3-87 (507)
53 PF02554 CstA: Carbon starvati 97.4 0.015 3.3E-07 52.4 17.0 152 13-184 40-195 (376)
54 PF00324 AA_permease: Amino ac 97.3 0.0018 4E-08 60.9 10.3 209 39-254 7-233 (478)
55 TIGR03813 put_Glu_GABA_T putat 97.0 0.1 2.2E-06 49.1 18.9 23 230-252 202-225 (474)
56 PRK11375 allantoin permease; P 96.8 0.47 1E-05 45.0 22.2 157 95-256 89-263 (484)
57 TIGR02119 panF sodium/pantothe 96.8 0.47 1E-05 44.7 21.7 149 24-184 37-189 (471)
58 KOG1286 Amino acid transporter 96.7 0.007 1.5E-07 58.0 8.1 222 24-252 27-263 (554)
59 PRK09442 panF sodium/panthothe 96.5 0.79 1.7E-05 43.3 21.7 149 24-184 38-190 (483)
60 TIGR00835 agcS amino acid carr 96.3 0.5 1.1E-05 43.9 17.4 83 29-117 47-138 (425)
61 PRK15015 carbon starvation pro 96.1 0.27 5.9E-06 47.6 15.1 152 13-184 71-227 (701)
62 COG1966 CstA Carbon starvation 96.0 0.26 5.6E-06 46.7 14.0 115 13-138 40-156 (575)
63 TIGR02358 thia_cytX probable h 96.0 1.1 2.3E-05 41.2 18.2 139 30-185 6-144 (386)
64 TIGR00813 sss transporter, SSS 95.8 1.1 2.3E-05 41.4 17.6 145 27-184 3-148 (407)
65 PF00474 SSF: Sodium:solute sy 95.2 1.8 4E-05 39.7 17.0 145 26-184 5-152 (406)
66 PRK12488 acetate permease; Pro 95.2 3.2 6.9E-05 40.0 22.1 146 25-184 65-212 (549)
67 PRK11017 codB cytosine permeas 94.9 3 6.6E-05 38.5 18.6 77 95-179 71-149 (404)
68 TIGR00796 livcs branched-chain 94.4 1.7 3.6E-05 39.9 14.1 77 96-180 256-332 (378)
69 PF02133 Transp_cyt_pur: Perme 94.4 0.61 1.3E-05 43.4 11.5 112 26-144 6-119 (440)
70 PRK09395 actP acetate permease 94.0 6.2 0.00013 38.0 22.1 145 25-182 67-212 (551)
71 TIGR02711 symport_actP cation/ 93.8 6.6 0.00014 37.9 21.5 145 25-182 65-210 (549)
72 PF05525 Branch_AA_trans: Bran 92.9 1.7 3.6E-05 40.5 11.4 76 96-179 262-337 (427)
73 COG0591 PutP Na+/proline sympo 92.3 11 0.00023 35.9 22.4 144 26-181 37-184 (493)
74 COG1457 CodB Purine-cytosine p 90.2 16 0.00035 34.2 17.0 82 98-187 84-167 (442)
75 TIGR03648 Na_symport_lg probab 89.6 21 0.00045 34.5 18.2 146 24-182 29-175 (552)
76 KOG1289 Amino acid transporter 89.0 9.6 0.00021 36.4 12.4 77 31-112 55-131 (550)
77 PRK15433 branched-chain amino 88.0 9.4 0.0002 35.7 11.7 76 96-180 266-341 (439)
78 COG1114 BrnQ Branched-chain am 87.9 19 0.00041 33.4 13.2 77 96-180 264-340 (431)
79 TIGR00796 livcs branched-chain 87.7 22 0.00048 32.6 19.3 71 37-118 3-76 (378)
80 PRK15419 proline:sodium sympor 81.5 50 0.0011 31.4 18.7 152 24-183 37-191 (502)
81 TIGR02121 Na_Pro_sym sodium/pr 80.2 54 0.0012 31.0 18.9 152 24-183 33-187 (487)
82 PF01566 Nramp: Natural resist 78.1 52 0.0011 29.6 12.9 78 96-181 43-122 (358)
83 KOG2082 K+/Cl- cotransporter K 72.1 27 0.00059 35.0 8.9 107 26-137 112-220 (1075)
84 TIGR01197 nramp NRAMP (natural 69.9 92 0.002 28.7 15.7 129 36-178 11-141 (390)
85 TIGR00909 2A0306 amino acid tr 62.0 1.3E+02 0.0028 27.6 14.9 46 96-142 265-310 (429)
86 PF01235 Na_Ala_symp: Sodium:a 60.2 1.5E+02 0.0032 27.7 17.7 159 27-195 17-182 (416)
87 PF01235 Na_Ala_symp: Sodium:a 57.1 1.1E+02 0.0025 28.5 9.8 144 43-193 234-384 (416)
88 KOG2083 Na+/K+ symporter [Inor 56.4 29 0.00063 33.7 5.9 111 29-144 31-143 (643)
89 PHA02764 hypothetical protein; 48.9 1.3E+02 0.0028 27.3 8.3 80 25-110 10-92 (399)
90 PRK00701 manganese transport p 48.6 2.3E+02 0.0051 26.5 17.5 76 96-179 95-172 (439)
91 PRK10484 putative transporter; 39.2 3.5E+02 0.0076 25.8 18.6 89 24-119 35-124 (523)
92 PF13520 AA_permease_2: Amino 33.1 3.7E+02 0.0081 24.3 12.6 45 97-142 260-304 (426)
93 PF02028 BCCT: BCCT family tra 32.9 4.3E+02 0.0092 25.2 9.8 140 59-205 341-485 (485)
94 COG1292 BetT Choline-glycine b 32.6 4.5E+02 0.0097 25.4 9.7 77 124-201 413-494 (537)
95 TIGR00906 2A0303 cationic amin 27.4 5.7E+02 0.012 24.7 13.6 37 105-141 308-344 (557)
96 PRK09928 choline transport pro 26.8 6.6E+02 0.014 25.2 10.7 60 125-184 418-485 (679)
97 PF11085 YqhR: Conserved membr 21.4 3.4E+02 0.0073 22.0 5.8 86 109-200 68-154 (173)
98 TIGR01301 GPH_sucrose GPH fami 20.6 5.6E+02 0.012 24.3 8.2 59 46-110 252-310 (477)
99 PF05360 YiaAB: yiaA/B two hel 20.3 1.5E+02 0.0033 18.8 3.0 40 34-73 7-46 (53)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-41 Score=307.30 Aligned_cols=232 Identities=31% Similarity=0.523 Sum_probs=204.4
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccccc-ccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCE-KAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~-~~~~~~~sy~~l~~~ 103 (263)
.+|++||+++++|.++.++|+|+|+||||++++||+.|+++|+..++++.||+++|.+|.+.++ ..++|+++|.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999864 455677899999999
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
+||++ +++++.++++..++|+|++|++..+|++..+++..+.++ .++.+.|+++++++.+|++++||++.++++|..+
T Consensus 114 afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~ 192 (437)
T KOG1303|consen 114 AFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVG 192 (437)
T ss_pred HhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHH
Confidence 99995 699999999999999999999999999999998877554 5556778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhheeeec
Q 024732 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVFINC 261 (263)
Q Consensus 183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~~~ 261 (263)
+++++.+.++.++.++.++...+.+..++...+... ..++++|+++|+| ||+++||||++||+|.+.+++++++.
T Consensus 193 avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~----~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~ 268 (437)
T KOG1303|consen 193 AVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP----TVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISY 268 (437)
T ss_pred HHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc----chhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHH
Confidence 999999999998888988876544434444332211 1289999999999 99999999999999999888777654
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.9e-36 Score=278.56 Aligned_cols=222 Identities=16% Similarity=0.192 Sum_probs=174.7
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (263)
.++++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||.++|.+++++ .+.+ +|+|++++++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~--sY~~la~~~~ 131 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIR--TYEGVARVLL 131 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCC--CHHHHHHHHh
Confidence 4678889999999999999999999999999999999999999999999999999999886 3334 9999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-----cchhhHHHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180 (263)
Q Consensus 106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-----~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~ 180 (263)
|| |+++++++.+.+.++|+|++|+++++|.++.+++.....+ ...+..+.+++.++++|++++|++++++++|.
T Consensus 132 G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 132 GP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 99 7999999999999999999999999999998876432111 11223344567788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcc---hhh-hhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK---SAR-IFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
+++.+.++..+++++.++.++.+++.++.++.....+ ..+ ..+++.++|+++||| ||.++||+++|||+|+..
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~ 288 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVG 288 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchh
Confidence 9998766555555555555543322111111000000 001 125889999999999 999999999999986543
No 3
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.98 E-value=2.2e-34 Score=263.89 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=181.7
Q ss_pred cCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhC
Q 024732 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (263)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (263)
|++|++++++|++|+++|+|+|+||++|+++||++|++++++++.++.||.++|.|++++.+ .+++..+|+|++++++|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999998632 12345699999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHH
Q 024732 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186 (263)
Q Consensus 107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~ 186 (263)
+ ++++++++++.+.++|.|++|+++++|.++.+++...++...++..+.++..++++|++++|++++++++|.+|.++.
T Consensus 80 ~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 80 P-KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 9 588999999999999999999999999999998765443456777778888899999999999999999999999866
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCcccccC-cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732 187 LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM 254 (263)
Q Consensus 187 ~~~~~iiv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~ 254 (263)
+.++.+++.........+. .+.+... .+..+..+.+.++|+++||| ||.++||+++|||+|+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~ 225 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEP---SGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFK 225 (409)
T ss_pred ceeeeeecceeeeeecccc---cccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccc
Confidence 5432222222222211111 1111111 12234568999999999999 9999999999999999855
No 4
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.98 E-value=1.6e-31 Score=241.76 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=180.4
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccc-cccCcccccHHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAADV 104 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~-~~~~~~~~sy~~l~~~~ 104 (263)
++..|..++..|+.|.++|+|+|+||+||+++||+.|.+...+++++++|+++.|++|.++. .+.+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999884 22222346888888755
Q ss_pred ----------hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcch
Q 024732 105 ----------LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS 174 (263)
Q Consensus 105 ----------~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~ 174 (263)
+|+ |+|.++++++.++++|.|++|++++++++.++.+... +...+.+.|+++..++.+|++++||++.
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-~~~~s~~~~i~~~~~~~lll~~Ir~Lk~ 201 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-PGVLSVRLYILIQLPPLLLLNLIRNLKI 201 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-CCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456 7999999999999999999999999999999987322 3467788889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 175 l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
|+.+|.++.++.++..++++...+.+..+ ..+-+..+ +..+....+|+.+||| |++++.|++++||+|+++
T Consensus 202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~----~~~~~~~~----~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F 273 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAIIMYYLVQDLPP----TSDLPAVT----GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF 273 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCC----cccccccc----chhhhHHHHHHHHHHhccceEEEehhhcccChhhc
Confidence 99999999987766655555444443321 12222211 2337888899999999 999999999999999986
Q ss_pred h
Q 024732 254 M 254 (263)
Q Consensus 254 ~ 254 (263)
-
T Consensus 274 ~ 274 (449)
T KOG1304|consen 274 P 274 (449)
T ss_pred C
Confidence 4
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=6.4e-31 Score=244.83 Aligned_cols=219 Identities=18% Similarity=0.222 Sum_probs=173.8
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccc----cccCc--cc--ccH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC----EKAGR--RH--IRF 97 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~----~~~~~--~~--~sy 97 (263)
+++++..++.+|+++..+|.|+|+||+||+++||++|++.+++.++++.||+++|.+++.++ ++++. ++ .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999875442 11121 11 378
Q ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhH
Q 024732 98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH 177 (263)
Q Consensus 98 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~ 177 (263)
.|+++..+||+ ++.+..+...+++++.|+.|++..++.+..+. ...+.+.|+++++++.+|++++|+++++++
T Consensus 123 ~e~~~~~~G~~-~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~ 195 (473)
T PLN03074 123 FEVLDGLLGPY-WKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DNLDKRTWTYIFGACCATTVFIPSFHNYRI 195 (473)
T ss_pred HHHHHHhcChh-HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------CCcCCCeEEeehHHHHHHHHHccCHHHHHH
Confidence 99999999994 67888888999999999999999888776652 234556677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhh
Q 024732 178 INLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFS 256 (263)
Q Consensus 178 ~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~ 256 (263)
+|++|+.++++..+.++..++.++..+ ..+++ ...+....+.++++++||| ||+++|||++|||+|+++.+.
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~~~~---~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~ 268 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHGQVE---GVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI 268 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccch
Confidence 999999876655444444444443211 11111 1224557888899999999 999999999999999998766
Q ss_pred ee
Q 024732 257 VF 258 (263)
Q Consensus 257 ~~ 258 (263)
..
T Consensus 269 ~~ 270 (473)
T PLN03074 269 YL 270 (473)
T ss_pred HH
Confidence 43
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.94 E-value=7.2e-28 Score=208.32 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=187.7
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCc---ccccHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGR---RHIRFRELAA 102 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~---~~~sy~~l~~ 102 (263)
+.+.+.+++.+|..|++-|--+++||+|....|| +++..+++++.+|+||+.+|++|..+..+.|. .+.+|-++++
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 4667889999999999999999999999999999 79999999999999999999999887322332 2579999999
Q ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
.+++++.|.+.+.+.|++.++.+|+.|+++.+|.++.-++.. ..+..-|+++..+.++|.+++|+++-.+.+|+++
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c 268 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL----SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC 268 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC----CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 999998887889999999999999999999999999888643 4455668999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM 254 (263)
Q Consensus 183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~ 254 (263)
.++.+++-.+++.+|.....++....++++. +..++..++|+++|+| .|..+|++..+|++|+.+.
T Consensus 269 t~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn 335 (524)
T KOG4303|consen 269 TISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccceeEEEEE------EcccCceEEEEEEEeeeceeeccccccccCChhHhe
Confidence 9999999988888888877665543333322 2336778899999999 9999999999999998643
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.94 E-value=5.9e-27 Score=213.49 Aligned_cols=215 Identities=21% Similarity=0.307 Sum_probs=172.8
Q ss_pred cCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhC
Q 024732 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (263)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (263)
++.|.+.+++|+.|+++|+|+|++|+||++.|.+.|+++++++++++.++.+++.+++.+ .+.+ +|++++++.+|
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~---~~~~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK---SGER--TYSSLGDLIFG 78 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh---cCCC--CHHHHHHHHcC
Confidence 456889999999999999999999999999999999999999999999999999999997 4444 99999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-ccc----cchhhH-HHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNG----SLKLYE-FIAMVTVVMIVLSQLPTFHSLRHINL 180 (263)
Q Consensus 107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~-~~~----~~~~~~-~~~i~~~~~lpl~~~r~l~~l~~~S~ 180 (263)
+ .|+....+...+...| |++|++.++|.++.+..... +++ ...++. ++++...+++|+++.|+++++++.|.
T Consensus 79 ~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 K-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred C-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9 4866666777666666 79999999999997655432 111 123333 46778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
++.++.++++.+++.+.+..... .+...+..+ +..+.++.+.++|+++||| ||.+..+|++|||+|+.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCA--LGRLSYLVP--NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc--cCCcccccC--CcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 99998887777777666664320 011122221 1112257999999999999 99999999999999976
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.93 E-value=8e-25 Score=201.14 Aligned_cols=218 Identities=17% Similarity=0.116 Sum_probs=175.9
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
.+.+.+..++++++.++++|+|+|+||++++..|++++++++++.+.+++++.+++.|+..+.++ ++.+|.+++++.
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~---~~~~~~~~~~~~ 81 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN---GKASITSLVEDY 81 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcccHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999998432 224899999999
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
+||+ +++++++...+.+++.+.+|.+..+|.++..++.....+...+..+.+++.+++.++++.++...++..+.+...
T Consensus 82 ~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 82 LGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred hCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 9995 779999999999999999999999999999987532222256777788888899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcc-hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
...+.+++.+........ +.....+.. ..+..++..++|+++||| ||+++|++++|||+++.
T Consensus 161 ~v~~~~~l~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 161 KVIYLVLLVVYLIPHWNP------ANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred HHHHHHHHHHHHhcccCH------HHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 655444433332222110 111111111 123447889999999999 99999999999998876
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.77 E-value=3.8e-17 Score=149.01 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=156.9
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (263)
+++++.+++++.+..+.+|+|+|+||.+.++.|+.++++++++++.+..||+.+++|+..+.+ +..++..++|+.+
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~----~g~~~~tma~~~L 83 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR----IGSSFDTITKDLL 83 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999999999999987632 2458999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc--CCCcchhhHHHHHHH
Q 024732 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFHSLRHINLVSL 183 (263)
Q Consensus 106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~--~r~l~~l~~~S~~~~ 183 (263)
||+ |+.+..++..+..|+.+++|+--.++.+.+.++.. +.+.+...-.+++.++.-.+.+ .|..+++...-+.+.
T Consensus 84 G~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 84 GKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK 160 (414)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 995 88999999999999999999999999999988642 1123333333444444434443 345566665555555
Q ss_pred HHHHHHHHHHHHHHHhcCcCC-CCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcch-hhhhhhheee
Q 024732 184 LLSLGYSFLVVGACINAGFSK-NAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTL-LYISMFSVFI 259 (263)
Q Consensus 184 ~~~~~~~~iiv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~-p~~~~~~~~~ 259 (263)
+.+++..+.. .....+. .. .+.+. ...........++|++++|| +|+++|++++.+++ +++-++++.+
T Consensus 161 i~~f~~~~~~----l~~~i~~~~L--~~~~~--~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i 231 (414)
T PRK10483 161 VITFFLTFGS----LLGHVQPATL--FNVAE--SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY 231 (414)
T ss_pred HHHHHHHHHH----HHhhcCHHHH--hcccc--ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence 4333222111 1111110 00 00000 01112235778999999999 99999999999884 5666665543
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.74 E-value=2.7e-16 Score=143.35 Aligned_cols=220 Identities=12% Similarity=0.053 Sum_probs=151.0
Q ss_pred cCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhC
Q 024732 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (263)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (263)
++.+..++++.+..+.+|+|+|+||.+-++.|+.++++++++++++..||+.+++|+..+.+ +..++..++|+.+|
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~----~g~~l~tma~~~LG 82 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP----VGSSFNTITKDLIG 82 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHcC
Confidence 44578889999999999999999999999999999999999999999999999999987642 24589999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCcchhhHHHHHHHH
Q 024732 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSLL 184 (263)
Q Consensus 107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l~~l~~~S~~~~~ 184 (263)
|+ |+.+..++..+..|+.+++|+--.++.+.+.++... +.+.+...-.+++.++.-++.+. |..+++...-+.+.+
T Consensus 83 ~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~i 160 (415)
T PRK09664 83 NT-WNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI 160 (415)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 95 889999999999999999999999999999885411 11223332233444444344333 445555555554444
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchh-hhhhhhe
Q 024732 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLL-YISMFSV 257 (263)
Q Consensus 185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p-~~~~~~~ 257 (263)
.+++..+.. .....+... -.+.+...........+..++|++++|| +|+++|++.+.+++. ++-++++
T Consensus 161 i~f~~~~~~----l~~~i~~~~-L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaI 230 (415)
T PRK09664 161 ISFVIVFGS----FFFQVDYSI-LRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV 230 (415)
T ss_pred HHHHHHHHH----HhhcccHHH-HhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHH
Confidence 332221111 111110000 0000000000001224778999999999 999999999998844 4444444
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.73 E-value=6.6e-16 Score=141.31 Aligned_cols=218 Identities=12% Similarity=0.109 Sum_probs=150.2
Q ss_pred CchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCc
Q 024732 28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS 107 (263)
Q Consensus 28 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~ 107 (263)
+.+.+++++.+..+.+|+|+|+||.+.+..|.+++++.+++.+.++++|..++.|...+.+ +..+|.+++++.+||
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~----~~~~~~~~a~~~lG~ 77 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP----EGSSLTSMAEKYLGK 77 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHhCh
Confidence 4577899999999999999999999999999999999999999999999999999987632 245999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCcchhhHHHHHHHHH
Q 024732 108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSLLL 185 (263)
Q Consensus 108 ~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l~~l~~~S~~~~~~ 185 (263)
+ ++++..+...+..++.+++|..-.++.+.+.+..... .+.+...-.+++.++.-.+... |-+++....-....+.
T Consensus 78 ~-g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 78 K-GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMII 155 (394)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5 7899999999999999999999999999998865431 1223332223333332222222 1233333332333322
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc-hhhhhhhheee
Q 024732 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTST-LLYISMFSVFI 259 (263)
Q Consensus 186 ~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~-~p~~~~~~~~~ 259 (263)
++...+ ...+.+ . +. +......+...+....+.++|+.++|| .|+++|++.+.++ |+++-++++++
T Consensus 156 ~~~~l~---~~~~p~-~--~~--~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~ 223 (394)
T PF03222_consen 156 SFIILV---VYLIPH-W--NP--SNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIII 223 (394)
T ss_pred HHHHHH---HHHhhh-c--CH--HHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHH
Confidence 221111 111111 1 10 000001111223446889999999999 9999999999999 66666666654
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.68 E-value=4.5e-15 Score=135.66 Aligned_cols=214 Identities=18% Similarity=0.156 Sum_probs=146.1
Q ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (263)
++..++++.+..+.+|+|+|+||.+.+..|.+++++++++++.+..|+++++.|+..+.+ +..++.+++|+.+||+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~----~~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP----ADTGLGTLAKRYLGRY 78 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCCHHHHHHHHhChH
Confidence 367889999999999999999999999999999999999999999999999999766521 2358999999999995
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCcchhhHHHHHHHHHH
Q 024732 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSLLLS 186 (263)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l~~l~~~S~~~~~~~ 186 (263)
|+++..+...+..|..+.+|..-.++.+.+.+..+..+ +.+.....+++.++.-.+.+. |-.++....-..+.+..
T Consensus 79 -g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 79 -GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999988887543221 222223333443333223332 22333333333333322
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc-hhhhhhhheee
Q 024732 187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTST-LLYISMFSVFI 259 (263)
Q Consensus 187 ~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~-~p~~~~~~~~~ 259 (263)
+.. . ........+ .+ .+...+..+ ..+..++|++++|| +|+++|++.+.++ ++++.++++++
T Consensus 157 ~~~--~--~~~l~p~~~-----~~-~L~~~~~~~-~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~ 220 (403)
T PRK15132 157 LVV--M--LALMMPHIH-----KV-NLLTLPLQQ-GLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII 220 (403)
T ss_pred HHH--H--HHHHHHhcC-----HH-HHhcCCccc-cHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence 211 1 111111110 00 011001000 13778899999999 9999999999988 45666666554
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.64 E-value=7.2e-15 Score=134.03 Aligned_cols=212 Identities=13% Similarity=0.086 Sum_probs=146.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHH
Q 024732 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (263)
Q Consensus 35 ~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~ 114 (263)
+..+.++++|+|++++|.++++.|+..+.+.+++.+.++.++..++.|...+.|+ ..+|.+.+++.+|| |++.++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~----~~~~~~~~~~~~G~-~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG----GASFNTIAKDLLGK-TGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHhCH-HHHHHH
Confidence 4456789999999999999999999999999999999999999999999876432 23899999999999 688999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 024732 115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194 (263)
Q Consensus 115 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv 194 (263)
.+...+.++..+.+|.+..++.+..+++.... ...+.....+++.+++.++. .+..+...+++.+.+...+...++.+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFG-FPWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887754211 12233333333444444444 34556667766665554333322222
Q ss_pred HHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc-hhhhhhhhee
Q 024732 195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTST-LLYISMFSVF 258 (263)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~-~p~~~~~~~~ 258 (263)
.....+...++. .+. +.+.....+.+.+++...++| +|++++++.+|++ ++++-.+.+.
T Consensus 156 i~~~~~~~~~~~----~~~-~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii 216 (381)
T TIGR00837 156 SGLLPHVKGDLL----LDV-ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSIL 216 (381)
T ss_pred HHHHhhccHHHH----hcC-ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHH
Confidence 222222110000 000 000112336788899999999 9999999999997 4444444443
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.52 E-value=2.5e-12 Score=117.82 Aligned_cols=205 Identities=12% Similarity=0.036 Sum_probs=135.5
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHH
Q 024732 36 FHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVI 115 (263)
Q Consensus 36 ~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~ 115 (263)
+.+..+.+|+|+|+||......|.++.++++++.+.+++|+.+.|.|...+.+ ++..+|.+++++.+||+ ++.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~---~~~~~i~~v~~~~lG~~-g~~i~~ 101 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS---NPSGNITETVEEHFGKT-GGVVIT 101 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCCCHHHHHHHHcChh-HHHHHH
Confidence 78899999999999999999999999999999999999999999999877631 23458999999999997 568899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCC--cchhhHHHHHHHHHHHHHHHHH
Q 024732 116 FIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPT--FHSLRHINLVSLLLSLGYSFLV 193 (263)
Q Consensus 116 ~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~--l~~l~~~S~~~~~~~~~~~~ii 193 (263)
++..+..+..+.+|...+.+.+...+.++....+.++....+++.+++..+....+ +.++...-....+.+++...+.
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888887754332111133454444455544444444333 3333333333333222211111
Q ss_pred HHHHHhcCcCCCCCC-Ccccc---cCcch-hhhhhHHHHHHHHHHHh-ccCchHHhHHhcchh
Q 024732 194 VGACINAGFSKNAPP-KDYSL---ESSKS-ARIFSAFTSISIIAAIF-GNGILPEIQVTSTLL 250 (263)
Q Consensus 194 v~~~~~~~~~~~~~~-~~~~~---~~~~~-~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p 250 (263)
... +++.+. .+.+. ..... ........++|+++||| +|+.+|+....+|+.
T Consensus 182 ----LiP--~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~ 238 (443)
T PRK13629 182 ----LIP--YWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREE 238 (443)
T ss_pred ----HHH--HcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 111 111000 00010 00000 01125778899999999 999999998885443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.38 E-value=7.6e-11 Score=108.04 Aligned_cols=200 Identities=10% Similarity=0.032 Sum_probs=128.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHH
Q 024732 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (263)
Q Consensus 35 ~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~ 114 (263)
.+.+..+++|+|+|++|....+.||+..++..++...+++++.+++.|.....+.+ ..++.|++++.|||+ ++.+.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p---~~~i~~~~~~~fGk~-~G~ii 84 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP---CEDITEVVEEHFGKN-WGILI 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHcCHH-HHHHH
Confidence 46788999999999999999999999999989988999999999999985542211 348999999999995 66888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 024732 115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194 (263)
Q Consensus 115 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv 194 (263)
.+...+..+..+.+|....++.+...+.....- +...+....+..+..+-.......+.+.+++-+-+...+....++.
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887776542110 1111211122222221222333455555555443321111111111
Q ss_pred HHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhH
Q 024732 195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQ 244 (263)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~ 244 (263)
...+-+ .+. +.....+.......+...++++.++|| +|+++|+..
T Consensus 164 ~~lip~-~~~----~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~ 209 (397)
T TIGR00814 164 LYLIPH-WNG----ANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFA 209 (397)
T ss_pred HHHHHH-cCH----HHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHH
Confidence 111211 100 000000101112346889999999999 999999997
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.94 E-value=2.5e-07 Score=86.04 Aligned_cols=214 Identities=10% Similarity=-0.032 Sum_probs=119.1
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (263)
+|+-+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++.......+.|.....|+.| ....-+++.+
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~~ 79 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYAF 79 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHHc
Confidence 5678889999999999999999999999988886 5677777777777777777788766555444 2344456789
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHH-HHHHhhcCCCcchhhHHHHHHHH
Q 024732 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV-VMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
||.+| .++.....+........+-+...+.+..+++.. .+ ....+.+...+ ..+-..-.+..+...++..+...
T Consensus 80 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~--~~--~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 80 GKSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGAT--LS--PVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc--hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99655 666666554444444444333444444444310 11 11112111111 11111222333444444333332
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
..+...++++.........++ .+....+.+.........++....|+| |-.....+-+|+|||++
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 220 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSL---YVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER 220 (438)
T ss_pred HHHHHHHHHHHHHHHHhCccc---ccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc
Confidence 222212122222222111111 000111111111235667788899999 99999999999999985
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.88 E-value=3.8e-07 Score=84.84 Aligned_cols=214 Identities=10% Similarity=-0.013 Sum_probs=117.5
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (263)
+|+-+.++.+...+.+++|+|++.+|...++.|-. .++..++.++...-.+....|.....|+.|. .-+-+++ +
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG----~y~y~~~-~ 77 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGG----PIAYAGE-I 77 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----hhHHHHH-H
Confidence 57788899999999999999999999999988863 5556666666667777777777666555442 2223355 6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 024732 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (263)
Q Consensus 106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~ 185 (263)
|+.+| ..+..............+.+...+.+..+++... +......+.+ ..+..+-+.-.+..+....+..+....
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~--~~~~~~~~~~-~i~~~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN--DPIPAGIACI-AIVWVFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--ChHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88666 6666654443433444444445555555543221 1111111111 111111122233334444443333322
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 186 ~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
.+...+..+.....+..++.. ..+++. ....+..++..++....|+| |-......-+|+|||++
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~-~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r 218 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATY-AANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR 218 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhh-cccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc
Confidence 221111111111111100000 011111 11122347888899999999 99999999999999964
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.85 E-value=6.8e-07 Score=83.48 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=127.2
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++.....+.+++|+|++.+| .+.+..|- .+.+..++.+++....+..+.|.....|+.| .+.+.+++
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G----g~~~~~~~ 84 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG----SFSTYADD 84 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 467888999999999999999999999 77888886 4677778888888888888888877655443 45667888
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
.+||.+| .++.....+.....+.......+..+...++ + .....+.++..++.. ..-.+..+...++.....
T Consensus 85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~~~~~~~-~~n~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----D--IPLWLFSLILTIVLT-LTNLYSVKSYGEFEFWFA 156 (452)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHH-HHHHHhcchhhHHHHHHH
Confidence 9999655 7777776666655666666666666665542 1 122211111111111 112223344444433322
Q ss_pred HHHHHHHHHHHHHH---HhcCcCCCCCCCcc-cccC---cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 184 LLSLGYSFLVVGAC---INAGFSKNAPPKDY-SLES---SKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 184 ~~~~~~~~iiv~~~---~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
..-+...++.++.. .....+... ..++ +..+ .......+++.++....|+| |......+-+|+|||++
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r 232 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSE-VSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK 232 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh
Confidence 21111111111111 111111100 0001 0111 00112235888899999999 99999999999999975
No 19
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.83 E-value=6.3e-08 Score=79.44 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=132.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccc-----c---------cc--------
Q 024732 32 WHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-----C---------EK-------- 89 (263)
Q Consensus 32 ~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~-----~---------~~-------- 89 (263)
.-...-++|-++|+|-|+||-+|+..||+.++.+|++.+++++-+..+.+++... | ++
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 3456678899999999999999999999999999999999999988887765321 0 00
Q ss_pred ------------cCc------------------ccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024732 90 ------------AGR------------------RHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI 139 (263)
Q Consensus 90 ------------~~~------------------~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 139 (263)
.++ ++...++++...|.+ .|..+..+++++++||....|--.+-.+..+
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~ 173 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMN 173 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhh
Confidence 000 012366777788888 6888889999999999999999888777776
Q ss_pred hhcccc----------ccc--------c-ch----hhHHHHHHHHHH-HHhhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 024732 140 MYSDLY----------PNG--------S-LK----LYEFIAMVTVVM-IVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG 195 (263)
Q Consensus 140 ~~~~~~----------~~~--------~-~~----~~~~~~i~~~~~-lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~ 195 (263)
+-+... +++ + ++ .+.++.|+.+++ +|+.+. ++++-+++-++..++-...-...+.
T Consensus 174 itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~ 252 (319)
T KOG3832|consen 174 ITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGIS 252 (319)
T ss_pred hhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhh
Confidence 654321 100 1 11 244566665443 476655 6777777777666543322111111
Q ss_pred HHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhh
Q 024732 196 ACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLY 251 (263)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~ 251 (263)
..-.+.- +|-....++....-++-.-++...|+| +|...|.....|+...
T Consensus 253 l~tmqae------edaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 253 LATMQAE------EDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhc------ccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 1111111 111111111111112222357889999 9999998777666443
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.81 E-value=9e-07 Score=83.20 Aligned_cols=227 Identities=10% Similarity=-0.020 Sum_probs=124.8
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhC-hhHHHHHHHHHHHHHHHHHHHHHHccccccc-cCcccccHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG-WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAAD 103 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G-~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~-~~~~~~sy~~l~~~ 103 (263)
+|+-+.+++....+++++|+|++.+|....+.| -...++..++.++..........|.....|+ .|. .-+-.++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG----~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG----IYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----hhhhHHh
Confidence 567899999999999999999999998877655 2223444566666666667777777766554 342 3335588
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
.+||.+| .++.....+........+.....+.+..+++.+.++.......+ .+.....+-..-.+..+...++..+..
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILG-ASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8999655 76777665544444555555555555555542211111111111 111111222234445565555555544
Q ss_pred HHHHHHHHHHHHHHHhcCcCCCCCCCccccc-Ccc-hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhheee
Q 024732 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLE-SSK-SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVFI 259 (263)
Q Consensus 184 ~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~ 259 (263)
...+...+++++..+.....++. ..+.... .+. ......+..++....|+| |-......-+|+||+++--+++++
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~ 237 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLF-TADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVL 237 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhc-ccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHH
Confidence 33222222222222211111110 0011000 001 112235677888899999 999999999999995544444443
No 21
>PRK11021 putative transporter; Provisional
Probab=98.81 E-value=9.3e-07 Score=81.53 Aligned_cols=205 Identities=17% Similarity=0.142 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732 30 EWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (263)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (263)
++|+++...+++++|+|++.+|- +.+..|- ..++..++.+++.......+.|.....|+.| ....-+++.+||+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~ 76 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPR 76 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCch
Confidence 56889999999999999999995 4555564 5566777777777777888888877765554 3344567789997
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 024732 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG 188 (263)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~ 188 (263)
+| .+..............+........+...++. ....... ..+....++-+.-.+..+...++..+..+ .
T Consensus 77 ~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~---~ 147 (410)
T PRK11021 77 LG-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW----SSWQLLL-AELLTLALLWLLNLRGASSSANLQTVIAL---L 147 (410)
T ss_pred hH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC----CCchHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---H
Confidence 66 55565544322222222333334444444321 1111111 11111222222333444444444443222 1
Q ss_pred HHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 189 YSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 189 ~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
...++... ...+..+ ..+++..+....+..+...++....|+| |.......-+|+|||++
T Consensus 148 ~~~i~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k 208 (410)
T PRK11021 148 IVALVVAI-WWAGDIK---PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER 208 (410)
T ss_pred HHHHHHHH-HHHcCCc---hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc
Confidence 11111111 1111111 1112111111123346788899999999 99999999999999975
No 22
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.79 E-value=2.1e-06 Score=80.70 Aligned_cols=217 Identities=11% Similarity=0.099 Sum_probs=117.2
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++.....+..++|+|+...|.. .+..|-...++..++.+++......-+.|.....|+.| .+-.-+++
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~ 87 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR 87 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 46888999999999999999999988854 56778544466677777777777777788777765544 34456777
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
.+|+.+| .++.....+.....+.......+..+...+ ++ .....+.++..++.. +.-.+..+...+......
T Consensus 88 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~--~~~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 88 YLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWF----PQ--VPVWPWCLLFCALIF-GLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----Cc--CcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 8999655 666666655544444333333333333322 21 122222222222222 222233333333332221
Q ss_pred HHHHHHHHHHHHHHH--hcC---cCCCCCC---CcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 184 LLSLGYSFLVVGACI--NAG---FSKNAPP---KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 184 ~~~~~~~~iiv~~~~--~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
..-+..+++++...+ ..+ ..++.+. .+++..+.........+.++....|+| |-......-+|+|||++.
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~ 238 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKV 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhH
Confidence 111111111111111 100 0000000 011111100011235677778889999 999999999999999863
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.78 E-value=2e-06 Score=80.15 Aligned_cols=214 Identities=11% Similarity=0.003 Sum_probs=114.8
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
.+|+-+.++.+...++.++|+|++.+|...++.|- ..+...++.++...-....+.|.....|+.|.. ..| +++.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~-y~~---~~~~ 80 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGS-YAY---ARRC 80 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh-hHH---HHHH
Confidence 46788899999999999999999999999888774 334445555555666666677776666655432 233 7778
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh--cCCCcchhhHHHHHH
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRHINLVS 182 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~--~~r~l~~l~~~S~~~ 182 (263)
+||.+| .++.....+..............+....+++... .. ... .++..++++.+. -.+..+...++..+.
T Consensus 81 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 81 FGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--DP--LVL-TITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--Cc--HHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 999655 6666555544433333333333344444433211 11 111 111111211122 223334444444433
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
....+..+++++...+.....+.. ..+++. .+......+..++....|+| |-......-+|+|||++
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETY-MAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhc-cCCccc--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc
Confidence 322222211111111111110000 001111 11112235667788899999 99999999999999975
No 24
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.77 E-value=5.1e-07 Score=81.71 Aligned_cols=212 Identities=11% Similarity=0.113 Sum_probs=123.4
Q ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (263)
-|.++..+.+..+++|+|++.+|...++.+---+.+..++.++.......++.+...++| + + +..+..++.+||.
T Consensus 3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p--~-~--~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP--E-K--NFSEILSKYLGKI 77 (359)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC--C-C--CHHHHHHHHhhHH
Confidence 466889999999999999999999876644334556667777788888888888877642 2 2 7899999999994
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 024732 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG 188 (263)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~ 188 (263)
...++.+......+..+.......++.+...+. ++ .+... ..+..++..-....+.++...+++.+-....+.
T Consensus 78 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~--tp~~~-~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 78 -LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---PR--TPIIV-IIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC--CCHHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 546666666555555554445555565544321 11 12211 122222222233445666666666555432222
Q ss_pred H-HHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHH-HHHHHHh-ccCchHHhHHhcchhhhhhhheee
Q 024732 189 Y-SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSI-SIIAAIF-GNGILPEIQVTSTLLYISMFSVFI 259 (263)
Q Consensus 189 ~-~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~ 259 (263)
. ..++......+ .+. +.-.+..+. +..+...+. ....++| |...+....+++|+|++.++...+
T Consensus 151 ~~~~il~~~~~~~-~~~---~~l~P~~~~---g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~ 217 (359)
T TIGR00912 151 LFILVLILLAPKL-GNI---KNLLPVLEN---GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIK 217 (359)
T ss_pred HHHHHHHHHhccc-ccH---HHccCcccc---CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 2 11111111111 000 000011111 122444433 4778899 888888889999999887776543
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.77 E-value=2.3e-06 Score=80.43 Aligned_cols=226 Identities=15% Similarity=0.150 Sum_probs=122.1
Q ss_pred ccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcc
Q 024732 15 RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRR 93 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~ 93 (263)
.||++.+....+|+-+.++.....+.+++|+|++-.| .++++.|. ..++..++.+++......-+.|.....+ +
T Consensus 8 ~~~~~~~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~----~ 82 (469)
T PRK11049 8 ADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNL----E 82 (469)
T ss_pred hhhccccchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Confidence 3333333334678889999999999999999999987 58888887 4455666666666666666666543211 1
Q ss_pred cccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcc
Q 024732 94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH 173 (263)
Q Consensus 94 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~ 173 (263)
..++.+.+++.+|+.+| .++.....+.............+..+...++ + .....+..+...+...+. .+..+
T Consensus 83 ~~~~~~ya~~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p----~--~~~~~~~~~~~~~~~~iN-~~g~~ 154 (469)
T PRK11049 83 YKSFSDFASDLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFP----D--LSDWVASLAVVLLLLSLN-LATVK 154 (469)
T ss_pred CCcHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHHHH-HHhHH
Confidence 22566789999999644 7777777665543444444455555544432 1 112221122222222122 22333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH--h-cCcCCCCCC-Ccc-cccCc-c--hhhhhhHHHHHHHHHHHh-ccCchHHhH
Q 024732 174 SLRHINLVSLLLSLGYSFLVVGACI--N-AGFSKNAPP-KDY-SLESS-K--SARIFSAFTSISIIAAIF-GNGILPEIQ 244 (263)
Q Consensus 174 ~l~~~S~~~~~~~~~~~~iiv~~~~--~-~~~~~~~~~-~~~-~~~~~-~--~~~~~~~~~a~g~~~faf-~h~~i~~I~ 244 (263)
...++..+....-+...+++++..+ . .+......+ ..+ +..+. + ......++.++....|+| |-......-
T Consensus 155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a 234 (469)
T PRK11049 155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTA 234 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 4444433322211111111111111 1 111100000 001 00110 0 012235788899999999 999999999
Q ss_pred Hhcchhhhh
Q 024732 245 VTSTLLYIS 253 (263)
Q Consensus 245 ~~M~~p~~~ 253 (263)
+|+|||++.
T Consensus 235 ~E~knP~r~ 243 (469)
T PRK11049 235 AETKDPEKS 243 (469)
T ss_pred HHhcCHhhH
Confidence 999999863
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=98.76 E-value=9.6e-07 Score=81.78 Aligned_cols=219 Identities=10% Similarity=0.035 Sum_probs=129.1
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
+|+-+.++.+...+++++|+|++.+|.... ..|. ...+..++.++.....+..+.|...+.|+.| ..-+-.++.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~ 76 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEA 76 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHH
Confidence 477888999999999999999999996554 4454 3455566667777777888888877655433 233445668
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc---cccc------chhhHHHHHHHHHHHHhhcCCCcchh
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY---PNGS------LKLYEFIAMVTVVMIVLSQLPTFHSL 175 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~---~~~~------~~~~~~~~i~~~~~lpl~~~r~l~~l 175 (263)
+||+.| .++.....+.....+..+....++.+..+++... ++.. .....+..+...+++-+.-.+..+..
T Consensus 77 ~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 77 MGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 999644 7777777666666667777777777766654211 1100 00000111222222223334455666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh-
Q 024732 176 RHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS- 253 (263)
Q Consensus 176 ~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~- 253 (263)
.+++.+.....+...++++.....+... .+++.. ..........++...+|+| |.......-+|+|||++.
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i 228 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHFAS-----NNYTPF--MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI 228 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCcH-----HhcCCC--CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc
Confidence 6666555443333322222222222111 111110 0112335778889999999 999999999999999653
Q ss_pred hhhe
Q 024732 254 MFSV 257 (263)
Q Consensus 254 ~~~~ 257 (263)
.+++
T Consensus 229 p~ai 232 (429)
T TIGR00909 229 PKAI 232 (429)
T ss_pred cHHH
Confidence 4444
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=98.75 E-value=2.9e-06 Score=79.49 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=123.1
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++.....+..++|+|+...| .+.++.|- ..++..++.+++....+.-+.|.....|..| .+.+-+++
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~~ 93 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAYK 93 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence 567788899999999999999999999 45556675 4667777788888888888888887765544 55667889
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
.+|+.+| .++.....+.............+..++.+++ + .....+..+...+.. ..-.+..+..+++.....
T Consensus 94 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~~~l~~-~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 94 YWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP----D--VPTWIWAAAFFIIIN-AVNLVNVRLYGETEFWFA 165 (458)
T ss_pred HhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----c--CcHHHHHHHHHHHHH-HHHHhcchhhhhHHHHHH
Confidence 9999655 7777766555444444444445555544432 1 122222222222222 222234444444332222
Q ss_pred HHHHHHHHH--HHHHHH-hcCcCCCCCCCcccccCc--chhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 184 LLSLGYSFL--VVGACI-NAGFSKNAPPKDYSLESS--KSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 184 ~~~~~~~~i--iv~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
..-+..+++ ++.... ..+........+....+. ....+.++..++....|+| |-......-+|+|||++.
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~ 241 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKS 241 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhH
Confidence 111111111 111111 111110000001001000 0112235778899999999 999999999999999873
No 28
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.69 E-value=2.2e-06 Score=82.19 Aligned_cols=222 Identities=10% Similarity=0.041 Sum_probs=123.6
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF--RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.+|+-+.++....-+..++|+|+..+|-.. ...|-. ..+..++.++.+...+....|.....|+.|.. ..|. +
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~-Y~y~---~ 100 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSA-YLYS---Y 100 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-eeeH---H
Confidence 578889999999999999999999999643 347753 45566677777777788888877766655532 3444 3
Q ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc----cc------ccccchhh-HHHHHHHHHHHHhhcCCC
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD----LY------PNGSLKLY-EFIAMVTVVMIVLSQLPT 171 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~----~~------~~~~~~~~-~~~~i~~~~~lpl~~~r~ 171 (263)
+.+|+.++ +++.....+.....+.......++.+..++.. .. ........ ....+..++++-+...+.
T Consensus 101 ~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 46898544 77777666555444444333344444433321 00 00011111 111111122222334456
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcc-cccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcch
Q 024732 172 FHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTL 249 (263)
Q Consensus 172 l~~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~ 249 (263)
.+..+++..+.....+...+++++........++...... ...+.......+++.+.....|+| |-..+...-+|+||
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn 259 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence 6666666655444333332233333333221111100000 000000112236788889999999 99999999999999
Q ss_pred hhh
Q 024732 250 LYI 252 (263)
Q Consensus 250 p~~ 252 (263)
|++
T Consensus 260 P~r 262 (557)
T TIGR00906 260 PQR 262 (557)
T ss_pred ccc
Confidence 986
No 29
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.68 E-value=6.6e-06 Score=77.03 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=122.8
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++..+.-+++++|+|++-.| .+.++.|- ..++..++.+++.+..+.-+.|.....|..| .+.+-+++
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~~ 84 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAYK 84 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 578889999999999999999999888 45556664 4556667777777777777778776655444 45555677
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
.+||. ..+++.....+.....+.......++.++...+ + .....+..+...+..-+.. ...+.+..+..+..
T Consensus 85 ~~g~~-~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~--~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~ 156 (456)
T PRK10238 85 YWGSF-AGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP----E--IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFA 156 (456)
T ss_pred HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 89995 558888877777666666666666776655432 1 2222222222222222222 23333444443332
Q ss_pred HHHHHHHHHHHH--HH-HhcCcCCCCCC-Cc-ccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 184 LLSLGYSFLVVG--AC-INAGFSKNAPP-KD-YSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 184 ~~~~~~~~iiv~--~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
...+...+++++ .. +..+....... .+ .+..+........+..+++...|+| |-......-+|+|||++
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r 231 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh
Confidence 222211111111 11 11111110000 00 0101110111235667788899999 99999999999999976
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=98.65 E-value=1.2e-05 Score=75.54 Aligned_cols=215 Identities=14% Similarity=0.169 Sum_probs=123.4
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++..+.-+.+++|+|++-.| .+.+..|- ...+..++.+++.+..+.-+.|.....|+.| .+.+-+++
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG----g~~~y~~~ 82 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG----SFAVYAHR 82 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 467788899999999999999999988 66777786 4556667777777778888888877655443 57777888
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH--
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV-- 181 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~-- 181 (263)
.+|+.+| .++.....+.....+.......+..++..++. .....+..+..+++.-+. .+..+....+...
T Consensus 83 ~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~------~~~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 83 YMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE------MAQWIPALIAVALVALAN-LAAVRLYGEIEFWFA 154 (461)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------CchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 9999766 77777666655555555555566665554321 122222222222222121 2222333332221
Q ss_pred --HHHHHHHHHHHHHHHHHhcCcCCCCCCCccc-cc---CcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 182 --SLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 182 --~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
.+...+..+++.+.. +..+...+.+..... .. +.......++..++....|+| |-..+...-+|+|||++.
T Consensus 155 ~~ki~~i~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~ 232 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGV-IFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVT 232 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhH
Confidence 111111111111111 111111000000010 10 000112335778899999999 999999999999999763
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.60 E-value=1e-05 Score=75.97 Aligned_cols=225 Identities=11% Similarity=0.012 Sum_probs=118.4
Q ss_pred cCchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (263)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (263)
|+-+.++.+...+.+++|+|++.+|.... ..|....++..++.++.....+....|.....|+.+.-...| +++.+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~f 77 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGF 77 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHc
Confidence 45678899999999999999999997654 455433445566777777777777888776655322111244 78899
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHH-HHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
||.+| .++.....+........|.......+...++.+.. ......+.+. ..+..+-..-.+..+..+++..+...
T Consensus 78 G~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 78 GPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG--GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99644 66666655544444445555444444444432211 1111111111 11111222223555555555544433
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCcc-c-cc-Ccchhh-hhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhhee
Q 024732 185 LSLGYSFLVVGACINAGFSKNAPPKDY-S-LE-SSKSAR-IFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVF 258 (263)
Q Consensus 185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~-~-~~-~~~~~~-~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~ 258 (263)
.-+...+++++..+.....+... .++ + .. +.+..+ ...+..++....|+| |-.....+-+|+|++++-.+.+.
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~ 232 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFT-NDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcC-ccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHH
Confidence 22222111111111110000000 000 0 00 001111 224557888999999 98888888899998766555543
No 32
>PRK10836 lysine transporter; Provisional
Probab=98.60 E-value=2.2e-05 Score=74.17 Aligned_cols=91 Identities=10% Similarity=0.156 Sum_probs=70.4
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++.....+.+++|+|++..|. +.++.|-...++..++.+++....+.-+.|.....|+.| ....-+++
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y~y~~~ 88 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFATYGQN 88 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHH
Confidence 4688899999999999999999999995 777888655677888888888888888899888766554 34555666
Q ss_pred HhCchhHHHHHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTA 120 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~ 120 (263)
.+|+.+| .++.....+
T Consensus 89 ~~g~~~g-f~~Gw~~~~ 104 (489)
T PRK10836 89 YVEEGFG-FALGWNYWY 104 (489)
T ss_pred HcChHHH-HHHHHHHHH
Confidence 7888655 555655443
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.57 E-value=2.3e-06 Score=79.04 Aligned_cols=218 Identities=11% Similarity=0.066 Sum_probs=124.1
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (263)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~-~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (263)
+++++.....+.++|+|+...| .....|.. ..+..++.+.+. ........|.....|+.| ....-.++.+||+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~~ 75 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGPF 75 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhccccc
Confidence 5788999999999999999999 77777764 444444444444 455666666655444333 4556677889997
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHH-HHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 024732 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEF-IAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL 187 (263)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~ 187 (263)
+| .+......+........+.....+.+...+....+ ......+ ..+..++.+-..-.+..+..+++........+
T Consensus 76 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 76 WG-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN--PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT--CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ch-hcccceeEEEeeccccccccchhhhhhhccccccc--cccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 66 77777777777777777777777777666532100 1111111 11222222333344456666666655554344
Q ss_pred -HHHHHHHHHHHhcCcCCCCCC--Ccc-cccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhheeee
Q 024732 188 -GYSFLVVGACINAGFSKNAPP--KDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVFIN 260 (263)
Q Consensus 188 -~~~~iiv~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~~ 260 (263)
....+++...+.....+..+. .+. +..+.. ....+.+++..+|+| |........+|+|| ++..+.+.++
T Consensus 153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~ 226 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSG---WPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH----SHSCSSCSS---SSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred hhhhhhheeEEEeeecccccccccccccccCCcc---ccchhhHHHHHHhhcccccccccccccccc-hhheeecccc
Confidence 222222223333321111000 000 111111 113678889999999 99999999999999 5666655443
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.57 E-value=1.6e-05 Score=74.84 Aligned_cols=216 Identities=10% Similarity=0.027 Sum_probs=123.2
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
||+-+.++.....+..++|+|++..| .+.+..|-...++..++.+++......-+.|.....|+.+. .|..-+++.
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG---~~~~~~~~~ 77 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG---SFATYASRF 77 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHH
Confidence 36677888999999999999999877 66777775433555666777777777777887776552221 577788899
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
+|+.+| .++.....+.....+.......+..+....+ ......|..+..++.. +.-.+..+...++......
T Consensus 78 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 78 VDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD------KVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHH
Confidence 999766 7777777666655556666666666554322 1122223322222211 2233344444444433321
Q ss_pred HHHHHHH--HHHHH-HHhcCcCCCCC-C-Ccc---cccCcc--hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 185 LSLGYSF--LVVGA-CINAGFSKNAP-P-KDY---SLESSK--SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 185 ~~~~~~~--iiv~~-~~~~~~~~~~~-~-~~~---~~~~~~--~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
.-+...+ +++.. ......+...+ . ..+ ....++ ......+..++....|+| |-.....+-+|+|||++
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r 228 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRK 228 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh
Confidence 1111111 11111 11111111000 0 000 000000 012346778888999999 99999999999999976
No 35
>PRK15049 L-asparagine permease; Provisional
Probab=98.56 E-value=1.7e-05 Score=75.20 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=70.0
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++....-+..++|+|++..|. +.+..|- .+++..++.+++.+..+.-+.|.....|..| ....-+++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG----g~y~y~~~ 100 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG----SFVSYARE 100 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence 4677788999999999999999998885 7788886 4567777778888888888888877765444 45566778
Q ss_pred HhCchhHHHHHHHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAIN 122 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~ 122 (263)
.+|+++| +++.....+..
T Consensus 101 ~~G~~~g-f~~GW~~~l~~ 118 (499)
T PRK15049 101 FLGEKAA-YVAGWMYFINW 118 (499)
T ss_pred HhCcHhH-HHHHHHHHHHH
Confidence 8999655 66676655443
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.56 E-value=1.1e-05 Score=75.11 Aligned_cols=215 Identities=10% Similarity=0.003 Sum_probs=117.4
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
.+|+-+.++.....+..++|....+.+.+++..|+..-++..++.+++....+.-+.|.....|+.| ..-.-+++.
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~~~ 80 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFARRA 80 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 4677788888888888888855566688899999864445555555555666666777766655444 334456788
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
+||.+| .++.....+........+....++.+...++.. ....+.++...+.. +.-.+..+...++..+..+
T Consensus 81 ~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~------~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 81 FGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG------PGWLAALVFYIVFI-GINILGVGEAAKLEFVVTA 152 (442)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHH
Confidence 999644 777776666666666667777777776665321 11111111111111 1122233333333332222
Q ss_pred HHHHHHHHHHHHHHhcCcCC-CCCCCcc-cccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 185 LSLGYSFLVVGACINAGFSK-NAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 185 ~~~~~~~iiv~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
..+....+.+.. .....+. +.-..+. +..+.......+++.++....|+| |.......-+|+|||++
T Consensus 153 ~~~~~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 153 VAIIALGVFIGA-MVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHHHHHHHHHHH-HhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 111111111111 1111100 0000000 000001112235677888889999 99999999999999975
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.55 E-value=4.2e-05 Score=71.63 Aligned_cols=216 Identities=12% Similarity=0.090 Sum_probs=119.8
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++.....+..++|+|++.+|.. .+..|- ...+..++.+++....+.-+.|.....|..| ..-+-+++
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~~~ 81 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYAQE 81 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 46778889999999999999999999854 667776 4577777777888888888888877655444 34446688
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
.+||.+| .++.+...+.....+.......+..+...++ + .....+.+...++.. ..-.+..+....+.....
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP----T--VPHWIWVLSVVLIIC-AVNLMSVKVFGELEFWFS 153 (457)
T ss_pred HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--CChHHHHHHHHHHHH-HHHHccchhHHHHHHHHH
Confidence 8999655 6677665554444444433444444443332 1 122222222222222 223334444444433222
Q ss_pred HHHHHHHHHH--HH--HHHhcCcCCCCC-CCcccccCc-c-hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 184 LLSLGYSFLV--VG--ACINAGFSKNAP-PKDYSLESS-K-SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 184 ~~~~~~~~ii--v~--~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
...+...+++ .. ...........+ ..+....+. . .....+.+.++....|+| |.......-+|+|||++.
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~ 231 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKS 231 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhH
Confidence 1111111111 11 111111100000 001101110 0 111235778889999999 999999999999999863
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.45 E-value=3.2e-05 Score=73.27 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=114.2
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~i-~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.+|+-+.++.....+.+++|+|++..|.. ..+.|-. ...+..++.+++....+..+.|.....|+.|. .-.-.+
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG----~y~~~~ 115 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYIL 115 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----hhhhHH
Confidence 56778889999999999999999999865 5556742 12244456666677777778887776555442 223345
Q ss_pred HHhCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhh-hhhccccccccchhhHHHHHHH--HHHHHhhcCCCcchhhHH
Q 024732 103 DVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQ-IMYSDLYPNGSLKLYEFIAMVT--VVMIVLSQLPTFHSLRHI 178 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~-~~~g~~i~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~i~~--~~~lpl~~~r~l~~l~~~ 178 (263)
+.+||.+| .+....... ...+.+..+....++.+. .++.. .........++.. +.++-+.-.+..+...++
T Consensus 116 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 116 EVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----CEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 57998655 555443322 222334444444454432 22221 1111111111111 111222223344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCccc-ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 179 NLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 179 S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
..+.....+...+++++..+.....++.+..+.+ .......+..++..++....|+| |-.....+-+|+|||++
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r 266 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence 5444332322222222222221111110001111 11111122346778889999999 99999999999999975
No 39
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.42 E-value=5.8e-05 Score=67.33 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=122.8
Q ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (263)
-|..|....+..+++|.|++.+|....+.+ --|-+..++.+.....-.+++.+..+++ ++ + +..|..++.+||.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~--p~-~--~l~~~~~~~~Gk~ 75 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF--PG-K--TLVEISEKLFGKW 75 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC--CC-C--CHHHHHHHHhCcH
Confidence 456889999999999999999998877664 1222334444445555555555555542 22 3 8999999999994
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 024732 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG 188 (263)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~ 188 (263)
...++.+...+..+......+...+|.+...+. |+ .+... .....++..-..-.+.++...+.+.+-....+.
T Consensus 76 -lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---p~--TP~~~-i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 76 -LGKIINLLYILYFLLISALVLREFSEFIKTYLL---PE--TPIWV-IILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc--CCHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777777777765432 11 12222 222223333344556677777755444432222
Q ss_pred HHHHHHHHHHhcCcCCCCCCCccc-ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhhee
Q 024732 189 YSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVF 258 (263)
Q Consensus 189 ~~~iiv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~ 258 (263)
...++... ..+.. |++ +.+.-..+..+.+.+.-...+.| +...+.-+...+|+|++.++...
T Consensus 149 ~~~~i~~~-~~~~~-------~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~ 212 (320)
T PF03845_consen 149 LLLLILLL-SIPNI-------DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLL 212 (320)
T ss_pred HHHHHHHH-hcccC-------CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 22222111 11111 111 11111123346777777777788 77777778888888887766543
No 40
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.40 E-value=4.7e-05 Score=70.99 Aligned_cols=216 Identities=12% Similarity=0.044 Sum_probs=114.8
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHH-HhhCh-hHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGW-GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~-i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.+|+-+.++.....+..++|+|++..|... +..|- ...++..++.+++....+....|.....|+.|. ...| .+
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---~~ 81 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---LK 81 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---HH
Confidence 468889999999999999999999999764 44553 234445566666667777777777666555553 2345 34
Q ss_pred HHhCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 024732 103 DVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~ 181 (263)
+.+||.+| .++....+. ........+....++.+....+ .+...... ..+.....+-..-.+..+...++..+
T Consensus 82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~----~~~~~~~~-~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP----IDPLLGKF-IAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67898655 556654332 2222333455555555544322 11111111 11111111222223444444444443
Q ss_pred HHHHHHHHHHHHHHHHH--hcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 182 SLLLSLGYSFLVVGACI--NAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 182 ~~~~~~~~~~iiv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
.....+...+++++..+ .+..+...+ .+.. . ....+..+.+.++....|+| |-......-+|+|||++.
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~-~~~~-~-~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAP-TTTA-I-GATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCC-Cccc-c-cccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 33322222222222212 121110000 0000 0 01112335778889999999 999999999999999864
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.35 E-value=2.2e-05 Score=79.51 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=125.1
Q ss_pred cCchHHHHHHHH-HhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccc-ccccCcccccHHHHHHH
Q 024732 27 SKGEWWHAGFHL-TTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAAD 103 (263)
Q Consensus 27 ~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~-~~~~~~~~~sy~~l~~~ 103 (263)
++-+|+.+++.- +.+++|+|+.- +++...+.|...+++..++.++++..|+.-+.+.+.. .++.|. .|. ...+
T Consensus 76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yisr 151 (953)
T TIGR00930 76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LISR 151 (953)
T ss_pred cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HHHH
Confidence 455666666666 99999999865 4588889998888999999999999999999988775 444443 344 3456
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc---cccc-hhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP---NGSL-KLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~---~~~~-~~~~~~~i~~~~~lpl~~~r~l~~l~~~S 179 (263)
.+|+.+| ..+.++..+.+...+..|.+-.++.+..++..... .... ....+..+..+++..+. ....+...++.
T Consensus 152 alGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q 229 (953)
T TIGR00930 152 SLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQ 229 (953)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 7898655 66677777767777788888888888777643210 0011 11222222222222222 22334344333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCC-Cccc---cc-C--cchhhhh-hHHHHHHHHHHHh-ccCchHHhHHhcchh
Q 024732 180 LVSLLLSLGYSFLVVGACINAGFSKNAPP-KDYS---LE-S--SKSARIF-SAFTSISIIAAIF-GNGILPEIQVTSTLL 250 (263)
Q Consensus 180 ~~~~~~~~~~~~iiv~~~~~~~~~~~~~~-~~~~---~~-~--~~~~~~~-~~~~a~g~~~faf-~h~~i~~I~~~M~~p 250 (263)
.+-++..++.++.+++..+....+..... ..++ +. + +...+.. .++..++++.+|| |......+-+|+|+|
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 33332212111111111111110000000 0000 00 0 0000111 2567778888899 999999999999999
Q ss_pred hh
Q 024732 251 YI 252 (263)
Q Consensus 251 ~~ 252 (263)
++
T Consensus 310 ~r 311 (953)
T TIGR00930 310 QK 311 (953)
T ss_pred hh
Confidence 76
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.30 E-value=0.00013 Score=68.08 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=110.4
Q ss_pred HhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHH
Q 024732 39 TTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI 117 (263)
Q Consensus 39 ~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~ 117 (263)
+.+++|+|++-.|. +.++.|. ..++..++.+++....+..+.|.....|+.| ...+-+++.+|+.+| .++...
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~g-f~~gw~ 77 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAG-YTIGWL 77 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHH-HHHHHH
Confidence 46889999999996 8889996 5777888888888888888888877765444 456667789999655 666666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024732 118 QTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197 (263)
Q Consensus 118 ~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~ 197 (263)
........+.......+..+.... ++ .....+..+..++...+. .+..+....+..+....-+...++.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWV----PG--IPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----cc--CcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 655444443333333333333222 11 122222222222222122 22334343333333221222211111111
Q ss_pred H--hcCcCCCCCCC---cccccCc-chhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732 198 I--NAGFSKNAPPK---DYSLESS-KSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM 254 (263)
Q Consensus 198 ~--~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~ 254 (263)
+ ..+.....+.. ++.-.+. ....+.++..++....|+| |-......-+|+|||++..
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~i 214 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHI 214 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhH
Confidence 1 12111000000 0000000 0112336888999999999 9999999999999998643
No 43
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.25 E-value=2.1e-05 Score=73.01 Aligned_cols=219 Identities=14% Similarity=0.110 Sum_probs=135.5
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.+|+-+.+.++..++.+++|+|+...|-...+.+ ...++++-++.++++.-.+..-.|.-..-|+.|. +|.=+.+
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi~~ 86 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYISE 86 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhHHH
Confidence 4678888999999999999999999997766554 5567778888889999888888887666555554 4665555
Q ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~ 181 (263)
+||+.|+....-+..++..-..+..+-+..++. +.+.++ .| +..+..--++..+++..+. ..|...+++.+.+
T Consensus 87 -afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c---~~p~~~~~lla~~~l~~lt-~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 87 -AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC---DVPRVASKLLAAALLVLLT-LINSFSVKWATRV 160 (479)
T ss_pred -HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC---CCchHHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Confidence 588766644434444444444446666777776 767765 22 2233322233334444333 4466777776655
Q ss_pred HHHHHH---HHHHHHHHHHHhcCcCCCCCCCccc-ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 182 SLLLSL---GYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 182 ~~~~~~---~~~~iiv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
-.+.++ ..+.++++..++.....+..+.+.+ ..+++ .+..+...++=.-.||| |-+.+-.+-+|+|||++.
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEiknP~kt 236 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRT 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcCcccc
Confidence 443332 2222222333333222111111111 33322 23446778888899999 999999999999999763
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.24 E-value=0.00021 Score=66.54 Aligned_cols=219 Identities=12% Similarity=0.081 Sum_probs=121.4
Q ss_pred ccCchHHH-HHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 26 ESKGEWWH-AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 26 ~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
+|+-+.++ ........++|.|++.+|......+ ....+..++.+++....+....|.....|+.| .+-+-.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y~~~~~~ 85 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAYAYAKRA 85 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Ceeeehhhh
Confidence 45555555 8888888999999999999988776 22222234444444444555666555444344 355566778
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHH--HHHHhhcCCCcchhhHHHHHH
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV--VMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~lpl~~~r~l~~l~~~S~~~ 182 (263)
+|++++ .++.....+..........+..+..+..+++... ........+..+..+ ..+-+.-.+..+...+...+.
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998656 7777777777777777777777776666655310 000000111222222 222223334444444444444
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
....+...+++....+........ ..................+++...++| |-....+.-+|+|||++.
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ 233 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNG--NLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRT 233 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccc--ccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccc
Confidence 433333333332332333221110 001100001112225778889999999 999999999999999654
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.20 E-value=0.00068 Score=63.81 Aligned_cols=220 Identities=11% Similarity=0.046 Sum_probs=108.4
Q ss_pred cccCchHHHHHHHHHhhh-hhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAI-VGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~-iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.+|+-+.++....-+..+ +|.|+.+.| .+....|- ..+...++.++.....+.-+.|.....|..|. .-.-++
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG----~Y~~~~ 85 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGA----IYQWSR 85 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----HHHHHH
Confidence 567777777766555553 788888887 55566665 34555666666667777777777776665553 233356
Q ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---ccccccc----h-hhHHHHHHHH-HHHHhhcCCCcc
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD---LYPNGSL----K-LYEFIAMVTV-VMIVLSQLPTFH 173 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~---~~~~~~~----~-~~~~~~i~~~-~~lpl~~~r~l~ 173 (263)
+.+||.+| +++.....+................+..+... ...+.+. . ...+.+...+ ++.-+.-.+..+
T Consensus 86 ~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67898655 66666655544433333333333333332111 1001011 0 1111111111 111112223344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCccc--ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchh
Q 024732 174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS--LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLL 250 (263)
Q Consensus 174 ~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p 250 (263)
...++..+.....+...+++++.......+ + +...++ ..+...........+.....|+| |-.....+-+|+|||
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~-~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQR-G-PGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 444444443332222222222222222111 1 100010 00111111223555666778999 999999999999999
Q ss_pred hh
Q 024732 251 YI 252 (263)
Q Consensus 251 ~~ 252 (263)
++
T Consensus 243 ~r 244 (475)
T TIGR03428 243 RR 244 (475)
T ss_pred ch
Confidence 76
No 46
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.09 E-value=0.00083 Score=61.84 Aligned_cols=217 Identities=15% Similarity=0.194 Sum_probs=140.0
Q ss_pred cccCchHHHHHHHHHhhhhhhhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.+|+-+.++--+.=+...+|+|.. +=-.+.+..|- .-++.-.+.|++.+.=++.|.|...++| ... |+.+.+++
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p--~~g--SF~~~a~~ 85 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANP--VSG--SFSDYARK 85 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCC--cHHHHHHH
Confidence 457778888888888999999963 44466677774 2345566778888888999999887643 333 99999999
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHH--HHhhcCCCcchhhHH-HH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVM--IVLSQLPTFHSLRHI-NL 180 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--lpl~~~r~l~~l~~~-S~ 180 (263)
.+|+ |..++....-...-...+++-+..++..++..++. .+.+.+.++..+++ .=+.-.|-+.++.++ ++
T Consensus 86 ~lG~-~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 86 YLGP-WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD------VPQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred Hhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 56688888888888888999999999998888753 23444433333332 333455666655543 34
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCCCccc-cc---CcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM 254 (263)
Q Consensus 181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~ 254 (263)
+=+..++..+++.++. +..+...+....+.+ +. |.-.+.+.+++.++-+.+||| |.-++=.--+|-|||++..
T Consensus 159 IKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~i 236 (462)
T COG1113 159 IKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAI 236 (462)
T ss_pred HHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHH
Confidence 4343222222222111 222222111011111 11 111123457899999999999 9999988899999998754
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.72 E-value=0.011 Score=56.05 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=51.3
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHccccccc-cCcccccHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEK-AGRRHIRFRELAAD 103 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~-~~t~~lL~~~~~~~~~-~~~~~~sy~~l~~~ 103 (263)
+|+-++++.+...+.+++|.+ .+|.+++..|.. +++..++.+++. .-.+..+.|.....|+ .|. --.=.++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG----~Y~w~~~ 78 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGG----IYSWMNK 78 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Confidence 567888999888889999976 679889988863 444444444443 2344556666555443 232 2333456
Q ss_pred HhCchhHH
Q 024732 104 VLGSGWMF 111 (263)
Q Consensus 104 ~~G~~~g~ 111 (263)
++|++||.
T Consensus 79 ~~G~~~gf 86 (496)
T PRK15238 79 SVGPKFAF 86 (496)
T ss_pred HcCchHHH
Confidence 78987774
No 48
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.65 E-value=0.00075 Score=59.60 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=91.2
Q ss_pred HHHHHHhhhhhhhhhH---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhH
Q 024732 34 AGFHLTTAIVGPTILT---LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (263)
Q Consensus 34 a~~~l~~~~iG~GiL~---LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (263)
-.+-.+.+++|+|-=+ +=-=|.+-|+ .|..-.++++.+-..++..+.+..++ .+.+ +|+|+-+..+|++|+
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~---f~a~--~y~~~~~~v~~~~~~ 81 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKK---FNAT--SYREILKYVSGPKFA 81 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH---hccc--chHHHHHHHhhHHHH
Confidence 3455566888888543 1123455665 46666777777777788888887776 3344 999999999999776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732 111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (263)
Q Consensus 111 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S 179 (263)
.+.|+.+.+..++.++.-+--++..+++.+. ++.+.=.++..+++.-.-+.++.+.+-.+.
T Consensus 82 -ki~d~~iif~lf~~~vVM~AGags~~~e~~~-------lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 82 -KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG-------LPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred -HHHHHHHHHHHHHHHHHHhccchhHHHHHhC-------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 6679999999999998888878878777653 333332345555555566777666655433
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.64 E-value=0.0078 Score=56.69 Aligned_cols=111 Identities=12% Similarity=-0.012 Sum_probs=63.2
Q ss_pred cccCchHHHHHHHHHhhhhh--hhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVG--PTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG--~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (263)
.+|+-+.++....-. +++| .|+. +++.+.++.|-..-++..++.+++....+.-+.|.....|+.|. ...-+
T Consensus 10 l~r~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg----~y~~~ 84 (482)
T TIGR00907 10 LKREFSLWSIFGFAF-SISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGG----QYFWS 84 (482)
T ss_pred eecccchhHHHHHHH-HHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCcc----HHHHH
Confidence 456666665543333 3454 4543 34557777887555666777777777788888888777655442 33334
Q ss_pred HHHhCchhH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024732 102 ADVLGSGWM---FYFVIFIQTAINTGVGIGAILLAGECLQIM 140 (263)
Q Consensus 102 ~~~~G~~~g---~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~ 140 (263)
++.+|+++| .+++.....+.....+.+.....++.+...
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~ 126 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGI 126 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556664333 244555555545555544444555555443
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0041 Score=58.51 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=140.4
Q ss_pred cccCchHHHHHHHHHhhhhhhhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
.||+-.-.+-.+.=+...+|+|.+ +.-.+.++.|-..-++-.++.+.+.+..+.-|.|.+...|..| +|..-+.+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG----sF~~ya~r 117 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG----SFSTYATR 117 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhhhhh
Confidence 467777788888888999999974 6779999999988899999999999999999999988865322 68888888
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh--cCCCcchhhH-HHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRH-INL 180 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~--~~r~l~~l~~-~S~ 180 (263)
..++.|| ..+...-.++-.-++-.-++.++..++..++ + ..+...|..++.++++.+- -.|-+.+..+ +|.
T Consensus 118 fvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p----~-~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 118 FVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFP----D-TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred hcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC----C-CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 8888766 5556555444444444555556655555432 2 2566778887777665554 4455555443 455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCC-CCcccc-cCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 181 VSLLLSLGYSFLVVGACINAGFSKNAP-PKDYSL-ESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
+=+++++.+.++.++. ..-+.+++.+ ..+|.- ++.-...+.++...+-+..||| |.-++----.|-+||++
T Consensus 192 iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K 265 (541)
T COG0833 192 IKVLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK 265 (541)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh
Confidence 5555444443332221 1122221110 011111 1111223557777788888999 98888777889999976
No 51
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.51 E-value=0.035 Score=51.89 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=87.6
Q ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cc------hhhHHHHHHHHHHHHhh
Q 024732 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SL------KLYEFIAMVTVVMIVLS 167 (263)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~------~~~~~~~i~~~~~lpl~ 167 (263)
.++.-+.|..||+ +|..+..++..+...|-........++.+..++....+.. +. ......+++..+.+++.
T Consensus 76 l~~~v~sR~~FG~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 3788999999999 5988999999999999999999999988887776543221 11 12222345556666655
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh--ccCchHHhHH
Q 024732 168 QLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQV 245 (263)
Q Consensus 168 ~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf--~h~~i~~I~~ 245 (263)
...-.+-.++....+....+....+.+......+-.... ....+. ..+......++.++...+=.+ ...+.+...+
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~-~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysR 232 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPL-GELTGT-LHGSTGAWAFLYALSLVIGSFATWATNAPDFTR 232 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-ccCCCC-CCcchhHHHHHHHHHHHHHHHHHHHcCchhhhh
Confidence 555555555555555432221211111111111100000 000000 011112234555554433222 5667899999
Q ss_pred hcchhhhhhhh
Q 024732 246 TSTLLYISMFS 256 (263)
Q Consensus 246 ~M~~p~~~~~~ 256 (263)
.+|+|++....
T Consensus 233 y~~~~~~~~~~ 243 (442)
T TIGR00800 233 FGKSKKTAIWG 243 (442)
T ss_pred hcCCccchHHH
Confidence 99998875544
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.47 E-value=0.016 Score=55.19 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=46.0
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHH--HHHHHHHcccccc-ccCcccccHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFY--SYYLMSKVLDHCE-KAGRRHIRFRELAA 102 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~--t~~lL~~~~~~~~-~~~~~~~sy~~l~~ 102 (263)
+++-+.++-++-...... ++-.+| ++++.|+ +.+...+++.+.+. .+....|.....| +.| ..-.=++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence 355676666555555554 556888 5788884 45555555544433 5566666655322 223 2233357
Q ss_pred HHhCchhHHHHHHHH
Q 024732 103 DVLGSGWMFYFVIFI 117 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~ 117 (263)
+++|++||. ++.+.
T Consensus 74 ~a~G~~~Gf-~~~~~ 87 (507)
T TIGR00910 74 NTLGERFGF-AAIFF 87 (507)
T ss_pred hccCccHHH-HHHHH
Confidence 789998774 44333
No 53
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.44 E-value=0.015 Score=52.41 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=99.1
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHH----HHHHHHHHHHHHHHcccccc
Q 024732 13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTV----MGFVTFYSYYLMSKVLDHCE 88 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~----~~~~~~~t~~lL~~~~~~~~ 88 (263)
.+..+|+.|= + ..+.+...-+=+.++-|+|.+-=|..-..-||+++.+-.++ .+..-.|...++. .|+
T Consensus 40 A~~~~DGvDY-v---P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S--vR~-- 111 (376)
T PF02554_consen 40 AHTMNDGVDY-V---PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS--VRH-- 111 (376)
T ss_pred eeECCCCCCC-C---CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh--hcC--
Confidence 3555566552 1 23345566677789999999999988899999988776654 4444455544433 222
Q ss_pred ccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc
Q 024732 89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ 168 (263)
Q Consensus 89 ~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 168 (263)
.| + |.+|++++..||+ +|.+..+...+.+.....++....++.+... |. .....++.+...+.+-+..
T Consensus 112 -~G-~--Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~-----p~--~~~~~~~~I~~Ai~~G~~~ 179 (376)
T PF02554_consen 112 -KG-K--SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVNS-----PW--AATSSLLFIPIAILFGLLV 179 (376)
T ss_pred -CC-c--cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----hh--HHHHHHHHHHHHHHHhHhh
Confidence 23 3 8999999999996 8899999998888888888888888776442 11 1223334444555555554
Q ss_pred CCCcchhhHHHHHHHH
Q 024732 169 LPTFHSLRHINLVSLL 184 (263)
Q Consensus 169 ~r~l~~l~~~S~~~~~ 184 (263)
-|.=-++...+.+++.
T Consensus 180 y~~~~~~~~~t~i~vv 195 (376)
T PF02554_consen 180 YKRGGNLGPATIIGVV 195 (376)
T ss_pred eecCCchHhhHHHHHH
Confidence 3443345555555554
No 54
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.30 E-value=0.0018 Score=60.89 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=107.8
Q ss_pred Hhhhhhhhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHH
Q 024732 39 TTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI 117 (263)
Q Consensus 39 ~~~~iG~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~ 117 (263)
+..++|+|+. +.+.+..+.|.....+..++.+++...++.-+.|...+.|..| .+-..+++.+|+++| ..+.+.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G----g~y~y~~~~lg~~~G-f~~gw~ 81 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG----GFYAYASRGLGPALG-FAAGWA 81 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc----chhhhhhhccCCcCC-ceeeHH
Confidence 3466776654 4567888999877778888888888888888888888755443 455667778998755 545555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh--hccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 024732 118 QTAINTGVGIGAILLAGECLQIM--YSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG 195 (263)
Q Consensus 118 ~~~~~~g~~i~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~ 195 (263)
..+.............+..++.. ............ .+..++.+++..+.. ...+........-...-+...+..++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhhh
Confidence 44444444444444444444433 111100000000 112223322222222 22333333222211111111111111
Q ss_pred HH-HhcCcCCCCCCC-----ccc----ccCc----chhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732 196 AC-INAGFSKNAPPK-----DYS----LESS----KSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM 254 (263)
Q Consensus 196 ~~-~~~~~~~~~~~~-----~~~----~~~~----~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~ 254 (263)
.. +......+..+. +.. +.+. ...++.+++.++...+++| |-......-+|.|||++..
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~I 233 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTI 233 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhh
Confidence 11 111111010001 000 1110 1122457889999999999 9999999999999998743
No 55
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.02 E-value=0.1 Score=49.15 Aligned_cols=23 Identities=9% Similarity=-0.146 Sum_probs=20.5
Q ss_pred HHHHHh-ccCchHHhHHhcchhhh
Q 024732 230 IIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 230 ~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
.+.|+| |-......-+|+|||++
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r 225 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK 225 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc
Confidence 457899 99999999999999976
No 56
>PRK11375 allantoin permease; Provisional
Probab=96.83 E-value=0.47 Score=44.97 Aligned_cols=157 Identities=11% Similarity=0.029 Sum_probs=78.8
Q ss_pred ccHHHHHHHHhCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhccccc------cc----cchh--hHHHHHHHH
Q 024732 95 IRFRELAADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYP------NG----SLKL--YEFIAMVTV 161 (263)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~~~~~-~~~~g~~i~y~i~~~~~l~~~~~~~~~------~~----~~~~--~~~~~i~~~ 161 (263)
.++.-+.|..||++ |.++..+... +..+|=........++.+..++....+ ++ .... ....+++.+
T Consensus 89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 48999999999995 8677777663 455555555666677777655543221 11 1111 222234556
Q ss_pred HHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCCCCCcccccC--cchhhhhhHHHHHHHHHHHh--c
Q 024732 162 VMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFSKNAPPKDYSLES--SKSARIFSAFTSISIIAAIF--G 236 (263)
Q Consensus 162 ~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~a~g~~~faf--~ 236 (263)
+..++.+ ...+.++++..++........+.+++..+.+ +.. +..+....+ ......+....++...+=+| .
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~ 243 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIG---PIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAP 243 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hhhccCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 6666654 4556666666655543322222222222222 111 000110000 00111223444443333344 4
Q ss_pred cCchHHhHHhcchhhhhhhh
Q 024732 237 NGILPEIQVTSTLLYISMFS 256 (263)
Q Consensus 237 h~~i~~I~~~M~~p~~~~~~ 256 (263)
..+.|..-+..|+|++....
T Consensus 244 ~~~~~D~tRy~k~~~~~~~~ 263 (484)
T PRK11375 244 AVSASDFTQNAHSFRAQALG 263 (484)
T ss_pred HccccchhcccCChhhhHHH
Confidence 55789999999999876553
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.80 E-value=0.47 Score=44.66 Aligned_cols=149 Identities=5% Similarity=0.093 Sum_probs=92.0
Q ss_pred ccccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHHHHccccccccCcccccHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLT--VMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRE 99 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~--~~~~~~~-~t~~lL~~~~~~~~~~~~~~~sy~~ 99 (263)
...|+-+++.....+..+.+|+ ..++.|-...+.|+.+..+... ..+.+.. .-+..+.+..++ .+ ..|.+|
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e 111 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YN--AITIND 111 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CccHHH
Confidence 4467888898999998888884 5667888777788643222111 1111111 011112222232 33 349999
Q ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732 100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (263)
Q Consensus 100 l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S 179 (263)
.-++-||++..+.+..+...+..++.....+...+..++.++. .+....+++..++++-.+..--++...++.
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GG~~av~~td 184 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------LSYLTALFIFSSSVLIYTTFGGFRAVALTD 184 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999655567777777777777766667777777776652 333443455556666667777777777777
Q ss_pred HHHHH
Q 024732 180 LVSLL 184 (263)
Q Consensus 180 ~~~~~ 184 (263)
.+=..
T Consensus 185 ~iQ~~ 189 (471)
T TIGR02119 185 AIQGI 189 (471)
T ss_pred HHHHH
Confidence 66543
No 58
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.66 E-value=0.007 Score=57.97 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=124.6
Q ss_pred ccccCchHHHHHHHHHhhhhhhhhhHH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccccccc-CcccccHHHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVGPTILTL-PYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA-GRRHIRFRELA 101 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~L-P~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~-~~~~~sy~~l~ 101 (263)
..+|.-++++-.+.=+.+++|+|+.-. ..+.++.|=..-++..++.++..+.++.-+.|.....|.. | ++-.-+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceeee
Confidence 357888888888888899999998654 5777777766666777777788888888888887776542 3 233334
Q ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-c-cccc-ccchhhHHHHH--HHHHHHHhhcCCCcchhh
Q 024732 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS-D-LYPN-GSLKLYEFIAM--VTVVMIVLSQLPTFHSLR 176 (263)
Q Consensus 102 ~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~-~-~~~~-~~~~~~~~~~i--~~~~~lpl~~~r~l~~l~ 176 (263)
++..|+-|| .++.....+...-.+-.-....+..++.... . .... ++.+...|..+ ...+++-+.-.+-+-..+
T Consensus 103 ~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 103 YRFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred eeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 456677666 5556655555555555556666666665530 0 0000 11221222222 223334444455544444
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcC-cCCC---CCCCcccc-cC-cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc
Q 024732 177 HINLVSL-LLSLGYSFLVVGACINAG-FSKN---APPKDYSL-ES-SKSARIFSAFTSISIIAAIF-GNGILPEIQVTST 248 (263)
Q Consensus 177 ~~S~~~~-~~~~~~~~iiv~~~~~~~-~~~~---~~~~~~~~-~~-~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~ 248 (263)
+.+.+.- ++.+.+.++.+ .+.-+ .+.+ .-..+|.- ++ .....+.+++.++-+..|+| |--.+-.--+|-|
T Consensus 182 f~~~~~kvl~~v~~~Il~i--Vi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k 259 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAI--VIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK 259 (554)
T ss_pred ehHHHHHHHHHHHHHHhhe--eeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 4443332 22222211111 11111 1110 00001110 11 00111447889999999999 9999999999999
Q ss_pred hhhh
Q 024732 249 LLYI 252 (263)
Q Consensus 249 ~p~~ 252 (263)
||++
T Consensus 260 NP~k 263 (554)
T KOG1286|consen 260 NPRK 263 (554)
T ss_pred CCcc
Confidence 9986
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.49 E-value=0.79 Score=43.31 Aligned_cols=149 Identities=5% Similarity=0.029 Sum_probs=88.3
Q ss_pred ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHH--HHHHHHH-HHHHHHHHHccccccccCcccccHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCL--TVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRE 99 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l--~~~~~~~-~~t~~lL~~~~~~~~~~~~~~~sy~~ 99 (263)
...|+-+++-..+.+..+.+| ...++.|-...+.|+.+..... ...+++. .+-+..+.+..++ .+ ..|..|
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e 112 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YN--AVTLND 112 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CccHHH
Confidence 345777888888888777766 4778888777777864211111 1111111 1122223333333 33 459999
Q ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732 100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (263)
Q Consensus 100 l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S 179 (263)
.-++-||+++.+.+..+...+..++.....+...+..++.++. ++....+++..++++-.+..--++...++-
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------ISYETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999765566666655555555555566666777766642 233433455566666677777777777777
Q ss_pred HHHHH
Q 024732 180 LVSLL 184 (263)
Q Consensus 180 ~~~~~ 184 (263)
.+=.+
T Consensus 186 ~iQ~~ 190 (483)
T PRK09442 186 ALQGI 190 (483)
T ss_pred HHHHH
Confidence 66543
No 60
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.26 E-value=0.5 Score=43.91 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHH---HHHHHHHHHccccccccCcccccH-----HH
Q 024732 29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVT---FYSYYLMSKVLDHCEKAGRRHIRF-----RE 99 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~i~g~i~l~~~~~~~---~~t~~lL~~~~~~~~~~~~~~~sy-----~~ 99 (263)
-|-+++.+..+.+.+|.| ++++|-|.+..| -.+++-|-+.+++. .|.-..|..-.++ +++ ..+| -.
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~--~~~--~g~~~GGP~yy 121 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE--RDA--DGVFRGGPMYY 121 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee--eCC--CCCEecChHHH
Confidence 577999999999999998 999999988877 24444444444333 3333333322222 111 1136 77
Q ss_pred HHHHHhCchhHHHHHHHH
Q 024732 100 LAADVLGSGWMFYFVIFI 117 (263)
Q Consensus 100 l~~~~~G~~~g~~~~~~~ 117 (263)
+-+...|| |-..+..++
T Consensus 122 i~~gl~~k-~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMR-WLAVLFAVF 138 (425)
T ss_pred HHHHhCcc-HHHHHHHHH
Confidence 77777777 544554554
No 61
>PRK15015 carbon starvation protein A; Provisional
Probab=96.12 E-value=0.27 Score=47.62 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=91.7
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHH----HHHHHHHHHHHHcccccc
Q 024732 13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG----FVTFYSYYLMSKVLDHCE 88 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~----~~~~~t~~lL~~~~~~~~ 88 (263)
.+..+|+.|= ++.++--.+ =|=+.++-|+|.+-=|.--++.||+++.+-.++=. ..-.|.. |.-+.++
T Consensus 71 A~~~~DG~DY-vPt~k~VLf---GHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~--L~~S~R~-- 142 (701)
T PRK15015 71 AVRHNDGLDY-VPTDKKVLF---GHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMV--LFVSTRR-- 142 (701)
T ss_pred ceECCCCCCc-CcCCccchh---HHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhh--eeeeecC--
Confidence 3555566552 333333333 34557999999999999999999999988766533 2333332 2222232
Q ss_pred ccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc
Q 024732 89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ 168 (263)
Q Consensus 89 ~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 168 (263)
.| | |.+|++++..|++ ++.+..+...+.......++-.++.+.+... |.. -...++.+-..++..+.+
T Consensus 143 -~G-r--Sig~ia~~~iG~~-~~~lfli~i~~iliiviAvfalvvv~al~~s-----P~~--~fsv~~tIpiAl~mG~~l 210 (701)
T PRK15015 143 -DG-R--SLGELVKEEMGPT-AGVIALVACFMIMVIILAVLAMIVVKALTHS-----PWG--TYTVAFTIPLALFMGIYL 210 (701)
T ss_pred -CC-c--cHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----cHH--HHHHHHHHHHHHHHHHHh
Confidence 23 3 9999999999995 8888888777777777777777766665321 111 122223333333333322
Q ss_pred -CCCcchhhHHHHHHHH
Q 024732 169 -LPTFHSLRHINLVSLL 184 (263)
Q Consensus 169 -~r~l~~l~~~S~~~~~ 184 (263)
-++.......|.+++.
T Consensus 211 ~~~r~g~v~~~SiiGvv 227 (701)
T PRK15015 211 RYLRPGRIGEVSVIGLV 227 (701)
T ss_pred eeecCCchHHHHHHHHH
Confidence 3345556567777775
No 62
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.98 E-value=0.26 Score=46.74 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=74.8
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH--HHHHHHHHHcccccccc
Q 024732 13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT--FYSYYLMSKVLDHCEKA 90 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~--~~t~~lL~~~~~~~~~~ 90 (263)
.+..+||.|= ++ .+.+..+-+=+.++-|+|.+-=|.--++.||++|.+-.++=+++. .+=...|.-..|+ .
T Consensus 40 A~~~nDG~DY-VP---tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~---~ 112 (575)
T COG1966 40 AHRKNDGVDY-VP---TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH---G 112 (575)
T ss_pred ceeccCCccc-cc---CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc---C
Confidence 4555566551 22 334455556667899999999999999999999988776544332 1111222222222 2
Q ss_pred CcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024732 91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQ 138 (263)
Q Consensus 91 ~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 138 (263)
| + |.+|++++.+|++ .+.+..+...+.......++.......+.
T Consensus 113 G-~--Si~~ia~~~lG~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 113 G-K--SIGEIAGKYLGRT-AKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred C-c--cHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3 9999999999996 77887777766666666666666655543
No 63
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=95.98 E-value=1.1 Score=41.19 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchh
Q 024732 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW 109 (263)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 109 (263)
=|....+|+.+-..|+.... +++.-+++..++-.++..--.-+......+ .| .++.-+.|..||+ +
T Consensus 6 ~W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~---~G---l~~~v~sR~~FG~-~ 71 (386)
T TIGR02358 6 IWFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGAD---TG---LSAMGSLKLSLGS-K 71 (386)
T ss_pred HHHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cC---cCHHHHHHHHHcc-c
Confidence 36667777777666654321 444333333333333333222333333332 33 4799999999999 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 024732 110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (263)
Q Consensus 110 g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~ 185 (263)
|..+..+...+...|--.......++.+..+.+...+. .....+..+..++..+.+.. -.+.++++..++...
T Consensus 72 Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~ 144 (386)
T TIGR02358 72 GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE--ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWL 144 (386)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 98888888888888888888888999998887543221 11233444455545544433 456666666666553
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=95.83 E-value=1.1 Score=41.37 Aligned_cols=145 Identities=10% Similarity=0.087 Sum_probs=92.1
Q ss_pred cCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732 27 SKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (263)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (263)
|+-+++...+.+..+.+| ...++.|....+.|+. +...............++..+..++ .+ ..|..|.-+.-|
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e~l~~Ry 76 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NG--AYTMPEYLEKRF 76 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cC--CCchhHHHHHHh
Confidence 566677777777776666 6778889877778863 2222222233333444555554443 33 449999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
|++..|.+..+...+..+......+...+..++.++. .+...-+++..++++-.+..--++...++-.+=.+
T Consensus 77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 9855667766766777777777777777888777653 22333344455555556666667777777666544
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=95.23 E-value=1.8 Score=39.67 Aligned_cols=145 Identities=13% Similarity=0.215 Sum_probs=80.9
Q ss_pred ccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
.|+-+++...+.+..+.+|+ ..++.|-...+.|+.. ...-+...........++.+-.++ .+ ..|..|.-++-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e~~~~R 78 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR---SG--AVTIPEYLEKR 78 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH---TT----SHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc---cc--hhhhhhhhhhh
Confidence 46677888888888888774 6788998888889753 333333333333334444443333 33 44999999999
Q ss_pred hCchhH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 105 LGSGWM--FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 105 ~G~~~g--~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
||++ . +.+..+...+.........+...+..++.++. .+....+++..++.+-.+..--++...+...+=
T Consensus 79 yg~~-~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ 150 (406)
T PF00474_consen 79 YGSK-ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQ 150 (406)
T ss_dssp T-HH-H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHTTCTT------SHHHHH
T ss_pred cCCc-hhhhhhcccccchhhhhhhhccccccccchhhccc-------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 9996 5 55555555555556666666777777766642 233434455555666666766677777666554
Q ss_pred HH
Q 024732 183 LL 184 (263)
Q Consensus 183 ~~ 184 (263)
.+
T Consensus 151 ~~ 152 (406)
T PF00474_consen 151 GV 152 (406)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 66
>PRK12488 acetate permease; Provisional
Probab=95.19 E-value=3.2 Score=40.01 Aligned_cols=146 Identities=10% Similarity=0.217 Sum_probs=88.7
Q ss_pred cccCchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHccccccccCcccccHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~i~g~i~l~~~~~~~~-~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
..|+-+|+...+.+..+.++++ .++.|-...+.|+- +....... .+.+ ....++.+-.++ .+ ..|.+|.-+
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g~-~~g~~~~~~~~a~~lr~---~g--~~T~~d~l~ 137 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALGV-LAGWPIILFLIAERLRN---LG--KYTFADVVS 137 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHHH-HHHHHHHHHHHHHHHHH---CC--CcchHHHHH
Confidence 4577788888888888877754 68899888888974 22222211 1111 112333333332 33 358999887
Q ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
+=||.+..|.+..+...+..+.-....+...+..++.++. .+...-+++..+++.-.+..--++...++..+=
T Consensus 138 ~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T PRK12488 138 YRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQIIK 210 (549)
T ss_pred HHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 7787434677777776666666666666667777766642 223333445555666666666677777777665
Q ss_pred HH
Q 024732 183 LL 184 (263)
Q Consensus 183 ~~ 184 (263)
.+
T Consensus 211 ~~ 212 (549)
T PRK12488 211 AV 212 (549)
T ss_pred HH
Confidence 43
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=94.95 E-value=3 Score=38.48 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=48.3
Q ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCc
Q 024732 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTF 172 (263)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l 172 (263)
.++.-+.|..||+ +|.++..+...+...|=........++.++.+.. .+...+.+++.++..+.+.. |.+
T Consensus 71 ~~~~v~sR~~FG~-~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~G~~~i 142 (404)
T PRK11017 71 LSTHLLARFSFGE-KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYFGISAL 142 (404)
T ss_pred cCHHHHHHHHhch-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999 5988888877777777666666666666665532 11122345555555555543 344
Q ss_pred chhhHHH
Q 024732 173 HSLRHIN 179 (263)
Q Consensus 173 ~~l~~~S 179 (263)
+++.+++
T Consensus 143 ~~~~~~~ 149 (404)
T PRK11017 143 TILSRIA 149 (404)
T ss_pred HHHHHHH
Confidence 4444443
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.40 E-value=1.7 Score=39.92 Aligned_cols=77 Identities=13% Similarity=0.249 Sum_probs=57.3
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l 175 (263)
-..+++++.+|+ +|+.+..+.+.+.|++++++.+...+|.++++.+ ..+...|.++..++.+-++.. .++++
T Consensus 256 ~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~------k~~y~~~v~~~~l~s~~ia~~-Gl~~I 327 (378)
T TIGR00796 256 ILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP------KLSYKTWVIVFTLFSFIVANL-GLTQI 327 (378)
T ss_pred HHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHh-CHHHH
Confidence 678899999999 6999999999999999999999999999888753 145555665555554444433 45544
Q ss_pred hHHHH
Q 024732 176 RHINL 180 (263)
Q Consensus 176 ~~~S~ 180 (263)
-..+.
T Consensus 328 i~~~~ 332 (378)
T TIGR00796 328 ISISI 332 (378)
T ss_pred HHHHH
Confidence 44443
No 69
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=94.37 E-value=0.61 Score=43.38 Aligned_cols=112 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGL--GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~--G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
+|+.++++-....+...+....+.+-...... ++.-+++..++-.++..--.-+......+ .| .++.-++|.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---~G---l~~~v~sR~ 79 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---TG---LPTMVLSRA 79 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C------HHHHTTT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---cC---CCchhcchh
Confidence 35555555554444444444433333333222 33333333333333332222233333222 33 378999999
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL 144 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~ 144 (263)
.||. +|..+..+...+...|-...-..+.++.+..+....
T Consensus 80 ~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 80 SFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp TS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999 598988988888888888888889999999887654
No 70
>PRK09395 actP acetate permease; Provisional
Probab=94.00 E-value=6.2 Score=38.04 Aligned_cols=145 Identities=13% Similarity=0.158 Sum_probs=83.4
Q ss_pred cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
..|+-++|...+.+..+.++ ...++.|-...+.|+.. ........+.......++.+-.++ .+ ..|+.|.-+.
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~---~g--~~T~~d~l~~ 140 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN---LG--KYTFADVASY 140 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh---CC--CccHHHHHHH
Confidence 45777778788888888777 56789998888889742 222222221112222333333332 33 3599999888
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
=||++..|.+..+...+..+......+.-.+..++.++. .+...-+++..+++.-.+..-=++...++-.+=
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-------i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ 212 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-------LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIK 212 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 888544667666655554445455555556666666542 223333445555555556666666666666543
No 71
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=93.85 E-value=6.6 Score=37.85 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=82.9
Q ss_pred cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
..|+.+++...+.+..+.++ +..++.|-...+.|+- +........+-.....+++.+-.++ .+. .|.+|.-++
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g~~~~~~i~~~~~a~~lrr---~g~--~T~~d~l~~ 138 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLGFLVGWPIILFLIAERLRN---LGR--YTFADVASY 138 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH---cCC--ccHHHHHHH
Confidence 35667777777777777666 6789999888888863 2222221111111223334443332 333 499998887
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
=||.|.-|.+..+...+..+.-....+.-.+..++.++. .+...-+++..+++.-.+..--++...++-.+=
T Consensus 139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T TIGR02711 139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIK 210 (549)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 787544566666555555555555566666766666642 222322445555555556666666666666553
No 72
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.90 E-value=1.7 Score=40.52 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=57.3
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l 175 (263)
-..+++++.+|+ .|..+..+.+.+-|+-++++-+...+|.+++.++ ..+...|.+++.++-+.++-. .+++.
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~------kisY~~~v~i~~i~S~~ian~-Gl~~I 333 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP------KISYKVWVIIFTIFSFIIANL-GLDQI 333 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHHHh-CHHHH
Confidence 577789999999 6999999999999999999999999999999874 344555666666665555543 33433
Q ss_pred hHHH
Q 024732 176 RHIN 179 (263)
Q Consensus 176 ~~~S 179 (263)
-..|
T Consensus 334 i~~s 337 (427)
T PF05525_consen 334 IKIS 337 (427)
T ss_pred HHHH
Confidence 3333
No 73
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.28 E-value=11 Score=35.93 Aligned_cols=144 Identities=9% Similarity=0.056 Sum_probs=95.7
Q ss_pred ccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHccccccccCcccccHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLT---VMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~---~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (263)
.|+-+.+-..+....+..+ .-.+++|-.....|+..-.+... +..+...+-+.-+.+..++ .+ ..|.+|.-
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~--~~T~~d~l 111 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RG--ATTIPDFL 111 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--CccHHHHH
Confidence 3554445666777777777 88999999999899754333333 3333444445555555532 33 45999999
Q ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 024732 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (263)
Q Consensus 102 ~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~ 181 (263)
++=||.++.|.+..+...+..+.-+...+..+++.++..+. .+...-+++...++...+.+--++...++..+
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 99999437889999999999999999999999988866553 22222233444555555566666666666655
No 74
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=90.22 E-value=16 Score=34.22 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh--cCCCcchh
Q 024732 98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSL 175 (263)
Q Consensus 98 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~--~~r~l~~l 175 (263)
-.++|..||. +|.++..+.+.+++.|-...-.+..++.... ....+..+++++.++++...+ =.|-++.+
T Consensus 84 mi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~-------~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l 155 (442)
T COG1457 84 MILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGS-------GTGLPVWAGILIIGVLMTLVTIFGYRALHKL 155 (442)
T ss_pred heeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhcccccc-------CCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3467889999 6999999999999999999999998887211 123455666666665544444 34556666
Q ss_pred hHHHHHHHHHHH
Q 024732 176 RHINLVSLLLSL 187 (263)
Q Consensus 176 ~~~S~~~~~~~~ 187 (263)
.+.+..-....+
T Consensus 156 ~~~a~~~~~~lf 167 (442)
T COG1457 156 ERIAVPLLLLLF 167 (442)
T ss_pred HHHHHHHHHHHH
Confidence 666665555333
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=89.55 E-value=21 Score=34.46 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=84.7
Q ss_pred ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.-.|+-+||...+.+..+.++ ...++.|-...+.|+-. ................++.+-.++ .+ ..|-.|.-+
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr---~~--~~T~~e~l~ 102 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRK---FG--KYTVPDFIG 102 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHH---CC--CccHHHHHH
Confidence 345778889888888888776 56788997777788632 212111111112233455554444 33 347778777
Q ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
+=||++..|.+..+...+..+......+...+..++.+.. .+...-+++..++.+-.+..--++...+.-.+=
T Consensus 103 ~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 103 DRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred HHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7788544566666666555555555556666666666542 223333444555555556665666666665554
No 76
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=88.96 E-value=9.6 Score=36.44 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhH
Q 024732 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (263)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (263)
.++..|.+....-|.- .+|.+.....|-..-.-..++.+.+..-.+.=|.|.+-..|..|. -|--.+..+ |+||+
T Consensus 55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg---Ly~waa~la-p~k~~ 129 (550)
T KOG1289|consen 55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG---LYFWAAVLA-PPKYG 129 (550)
T ss_pred HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc---HHHHHHHhc-Ccchh
Confidence 3445555555544421 255666665553322223445555666666777777666654443 354444443 55566
Q ss_pred HH
Q 024732 111 FY 112 (263)
Q Consensus 111 ~~ 112 (263)
+.
T Consensus 130 ~~ 131 (550)
T KOG1289|consen 130 PF 131 (550)
T ss_pred hH
Confidence 44
No 77
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.03 E-value=9.4 Score=35.72 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=57.1
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l 175 (263)
=.....++.+|+ +|+.+..+.+.+-|+-++++-....++.+++.++ .+...|..+..++.++++.. .++++
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~-G~~~I 336 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNL-GLSQL 336 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHh-HHHHH
Confidence 345568889999 7999999999999999999999999999888752 45566667777777777755 34444
Q ss_pred hHHHH
Q 024732 176 RHINL 180 (263)
Q Consensus 176 ~~~S~ 180 (263)
-..+.
T Consensus 337 I~~s~ 341 (439)
T PRK15433 337 IQISV 341 (439)
T ss_pred HHHHH
Confidence 43333
No 78
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=87.92 E-value=19 Score=33.39 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=57.8
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l 175 (263)
=..+..++.||+ .|+.+...++.+-|+-++++-+...+|..++..+. .+...|..++.++-+.++-. .++++
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~------~SY~~~v~if~i~sflvan~-GL~~I 335 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK------LSYKTWVIIFTLISFLVANL-GLEQI 335 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 467778999999 69999999999999999999999999999988753 34555666666665555543 34444
Q ss_pred hHHHH
Q 024732 176 RHINL 180 (263)
Q Consensus 176 ~~~S~ 180 (263)
-..|.
T Consensus 336 i~isv 340 (431)
T COG1114 336 IKISV 340 (431)
T ss_pred HHHHH
Confidence 44443
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.70 E-value=22 Score=32.59 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=40.9
Q ss_pred HHHhhhhhhhhhHHHHH-HHhhC--hhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHH
Q 024732 37 HLTTAIVGPTILTLPYV-FRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYF 113 (263)
Q Consensus 37 ~l~~~~iG~GiL~LP~a-f~~~G--~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~ 113 (263)
-++.-.+|+|.|-.|-. -.+.| |..+.+..++.++..-..+.. +-- +.| . +|.++.++ +||+++ .+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~--~~g-G--~~~~l~~~-~g~~f~-~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALA--LVG-G--GYDSLSAR-IGKVFG-IL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eee--ecC-C--CHHHHHHH-hChHHH-HH
Confidence 45667799999999843 34444 556666655555554443333 221 122 2 79999887 666555 43
Q ss_pred HHHHH
Q 024732 114 VIFIQ 118 (263)
Q Consensus 114 ~~~~~ 118 (263)
..+.+
T Consensus 72 f~~~~ 76 (378)
T TIGR00796 72 FTVIL 76 (378)
T ss_pred HHHHH
Confidence 34433
No 80
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=81.49 E-value=50 Score=31.39 Aligned_cols=152 Identities=7% Similarity=-0.004 Sum_probs=79.3
Q ss_pred ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
...|+-+++...+.+..+.++ .-.++.|-...+.|+-. ....+...+.......++.+-.+...+.+.+..|.+|.-+
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 345777888888888877777 45578998888889743 1111111111111112221111100000112348888888
Q ss_pred HHhCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732 103 DVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180 (263)
Q Consensus 103 ~~~G~~--~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~ 180 (263)
+=||++ +-+.+..+...+....-+..-+...+..++.++. .+....+++..++++..+..-=++...++-.
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~ 188 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-------MSYETALWAGAAATILYTFIGGFLAVSWTDT 188 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888862 2333444444444444344444445666655542 2333334555566666667766777777666
Q ss_pred HHH
Q 024732 181 VSL 183 (263)
Q Consensus 181 ~~~ 183 (263)
+=.
T Consensus 189 iQ~ 191 (502)
T PRK15419 189 VQA 191 (502)
T ss_pred HHH
Confidence 544
No 81
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=80.22 E-value=54 Score=31.00 Aligned_cols=152 Identities=8% Similarity=0.098 Sum_probs=79.6
Q ss_pred ccccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
.-.|+-+|+-..+.+..+.+++ -.++.|-...+.|+.. ........+.......++.+-.++..+.+.+..|-.|.-+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 3457778888888888877764 4678997777788743 2222222222233334443322211000122458889888
Q ss_pred HHhCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732 103 DVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180 (263)
Q Consensus 103 ~~~G~~--~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~ 180 (263)
.=||++ .-+.+..+...+.........+...+..++.++. .+...-+++..++..-.+..--++...++-.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-------i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~ 184 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-------LDYKTGLLIGALIIVIYTFFGGFLAVSWTDF 184 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 889852 2233333333333333334444455666655542 2233334445555555566666666666665
Q ss_pred HHH
Q 024732 181 VSL 183 (263)
Q Consensus 181 ~~~ 183 (263)
+=.
T Consensus 185 iQ~ 187 (487)
T TIGR02121 185 VQG 187 (487)
T ss_pred HHH
Confidence 543
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=78.10 E-value=52 Score=29.64 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=47.8
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc--CCCcc
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFH 173 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~--~r~l~ 173 (263)
+..|..++-+||+|+ ++..+...+.+.....+-++-++..++.++. .+...+.++..+..+-+.+ .++.+
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-------~~~~~~~~~~~~~~~~ll~~~~~~y~ 114 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLFG-------IPLWIWVLLVAVIAILLLWLSSGGYR 114 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHHHHHHHhccch
Confidence 788888888888655 6666666666777777766666666655541 2334444444444433333 66677
Q ss_pred hhhHHHHH
Q 024732 174 SLRHINLV 181 (263)
Q Consensus 174 ~l~~~S~~ 181 (263)
.+..+...
T Consensus 115 ~~E~~~~~ 122 (358)
T PF01566_consen 115 RLERILKV 122 (358)
T ss_pred HHHHHHHH
Confidence 77665543
No 83
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=72.10 E-value=27 Score=34.95 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=71.5
Q ss_pred ccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccc-cccCcccccHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAAD 103 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~-~~~~~~~~sy~~l~~~ 103 (263)
.|-|...+.+.-.+..++|. =.+=|-|..-..|...|.++..+++..++.|..=+...+..- .+.|- +|-=+.|.
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG---sYfmISRs 188 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG---SYFMISRS 188 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC---eeEEEecc
Confidence 34566666666666677773 345677889999999999999999999999999998887751 11221 56666654
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l 137 (263)
+|+-+| -.+.++.++-.-....-|++-.-+.+
T Consensus 189 -LGPEFG-gAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 189 -LGPEFG-GAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred -cCcccc-ceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 555455 44566655555555555666555544
No 84
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=69.94 E-value=92 Score=28.72 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=61.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHH
Q 024732 36 FHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVI 115 (263)
Q Consensus 36 ~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~ 115 (263)
+.+..+.+|.|-++ +..+.|--.|.-++=.+.+.+..+..+.--+++---.+| .+-.|+.++-++| |.++..-
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg---~~l~~~~r~~~~~-~~~~~~~ 83 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTG---LDLAEVCREHYPK-VPRITLW 83 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecC---CCHHHHHHHHCCC-chHHHHH
Confidence 33444556777555 445555544444432222222222222222222210122 3799999999998 5655444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHH--HHHHHHHhhcCCCcchhhHH
Q 024732 116 FIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM--VTVVMIVLSQLPTFHSLRHI 178 (263)
Q Consensus 116 ~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i--~~~~~lpl~~~r~l~~l~~~ 178 (263)
+...+...+...+-++-.+..++.++. .+...+.++ ...+.+.+...+..+.+..+
T Consensus 84 ~~~~l~ii~~~~~e~~G~a~al~ll~g-------~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~ 141 (390)
T TIGR01197 84 ILAELAIIATDMAEVIGTAIALNLLSH-------IPLWGGVLITIVDVFLFLFLDKPGLRILEAF 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcHHHHHHHHHHHHHHHHHHHhCCceeHHHH
Confidence 444333455555555555555544432 223333333 23333344455666666665
No 85
>TIGR00909 2A0306 amino acid transporter.
Probab=62.01 E-value=1.3e+02 Score=27.57 Aligned_cols=46 Identities=11% Similarity=-0.099 Sum_probs=38.0
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS 142 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 142 (263)
...++.++..|+ |+..+..+...+..++...+.+...++.+..+-+
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777777777 7878889999999999999999999988886653
No 86
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=60.24 E-value=1.5e+02 Score=27.69 Aligned_cols=159 Identities=10% Similarity=0.122 Sum_probs=79.3
Q ss_pred cCchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHH---HHHHHHHHccccccccCcccccHHHHHH
Q 024732 27 SKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTF---YSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~i~g~i~l~~~~~~~~---~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
++-|-+++.+.-+.+.+|+| +.+..-|..-.|- ..++-|-+.+++.. |+=..|..-.++..+.|.-.--=.--.+
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 44677999999999999988 5568888888874 45555555555544 4433444333321111110001112245
Q ss_pred HHhCchhHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH-
Q 024732 103 DVLGSGWMFYFVIFIQTAINTGV--GIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN- 179 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~~~~~g~--~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S- 179 (263)
+.+|.||...+..++ .+..++. .....-.+++.+++-+ ..+.. ..-+...++.-+..+--+++...++
T Consensus 96 ~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f-------~i~~~-~~gi~l~~l~~~vi~GGikrI~~v~~ 166 (416)
T PF01235_consen 96 KGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAF-------GIPPW-ITGIILAILVALVIFGGIKRIAKVSE 166 (416)
T ss_pred HHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc-------cccHH-HHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 567766665555554 2222322 2333333333333222 12222 2333334444455555666665555
Q ss_pred HHHHHHHHHHHHHHHH
Q 024732 180 LVSLLLSLGYSFLVVG 195 (263)
Q Consensus 180 ~~~~~~~~~~~~iiv~ 195 (263)
.+--++++.|.+..+.
T Consensus 167 ~lVP~Ma~~Yi~~~l~ 182 (416)
T PF01235_consen 167 KLVPFMAILYILGGLI 182 (416)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445556544443
No 87
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=57.07 E-value=1.1e+02 Score=28.45 Aligned_cols=144 Identities=12% Similarity=0.127 Sum_probs=77.7
Q ss_pred hhhhhhHHHHHHHh------hChhHHHHHHHHHHHHHHHHHHHHHHccccccccCccccc-HHHHHHHHhCchhHHHHHH
Q 024732 43 VGPTILTLPYVFRG------LGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIR-FRELAADVLGSGWMFYFVI 115 (263)
Q Consensus 43 iG~GiL~LP~af~~------~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~s-y~~l~~~~~G~~~g~~~~~ 115 (263)
.|.|.-.+..+-++ -|++..+-..+=.-++|.-|+..++-.-......+.+..+ ..+.-+..+|. ||.+++.
T Consensus 234 AG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~-~g~~~v~ 312 (416)
T PF01235_consen 234 AGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGS-WGPYFVA 312 (416)
T ss_pred CCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhh-hHHHHHH
Confidence 45554455555433 3443322223223345666666665443211011111112 23333445777 8999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 024732 116 FIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193 (263)
Q Consensus 116 ~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~ii 193 (263)
++..+.-|.+.+++.....+.+..+++. + . ....|-+++ +.+.++...-+++.++-++=++.....+..++.
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~~~---~-~-~~~~~ri~~-i~~~~~G~~~~~~~vW~~~Di~~~lmai~Nlia 384 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLFGG---K-K-AIWIYRILF-IAMVFIGAVIDLDLVWDLADIANGLMAIPNLIA 384 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC---c-e-EEEeeeehh-hhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888721 1 1 111111222 223344445577777777766655444444433
No 88
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=56.37 E-value=29 Score=33.65 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=66.5
Q ss_pred chHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccccc-ccCcccccHHHHHHHHhC
Q 024732 29 GEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCE-KAGRRHIRFRELAADVLG 106 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~-~~~~~~~sy~~l~~~~~G 106 (263)
|.|.+.....+-.+.| .--|=++|-..|.|...|.+++.....++..|..=-.....+.. +.|- .|--+++ .+|
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis~-slg 106 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLISR-SLG 106 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEEe-ccc
Confidence 3333333334444545 23567899999999999999888888777777544443333211 1221 3443333 355
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 024732 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL 144 (263)
Q Consensus 107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~ 144 (263)
+..| -.+.+...+-+.-.|.-|++-.++.+.+++...
T Consensus 107 ~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~ 143 (643)
T KOG2083|consen 107 PEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETE 143 (643)
T ss_pred cccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 5445 223444444455567779999999999988754
No 89
>PHA02764 hypothetical protein; Provisional
Probab=48.91 E-value=1.3e+02 Score=27.27 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=38.4
Q ss_pred cccCchHHHHHH-HHHhhhhhhhhhHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHH
Q 024732 25 LESKGEWWHAGF-HLTTAIVGPTILTLPYVFRGL--GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (263)
Q Consensus 25 ~~~~~s~~~a~~-~l~~~~iG~GiL~LP~af~~~--G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (263)
..|..|.+++.+ |+.....|.++ +.|+-++.. |.- ....-++.++++.-.+....+.....|+.|.. |.= .
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGd---YVY-I 83 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGD---YAY-I 83 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce---EEE-h
Confidence 457777788877 77777777754 545422222 221 11222233333333333344444444555542 322 2
Q ss_pred HHHhCchhH
Q 024732 102 ADVLGSGWM 110 (263)
Q Consensus 102 ~~~~G~~~g 110 (263)
++++|+.+|
T Consensus 84 SRAFGP~~G 92 (399)
T PHA02764 84 RTAFSSKFY 92 (399)
T ss_pred HHhhCccHH
Confidence 345777433
No 90
>PRK00701 manganese transport protein MntH; Reviewed
Probab=48.64 E-value=2.3e+02 Score=26.49 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=41.4
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHH--HHHHhhcCCCcc
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV--VMIVLSQLPTFH 173 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~lpl~~~r~l~ 173 (263)
+..|+.++-+||+ ..++..+...+-+.+..++-++-.+..++.++. .+..++.++..+ +.+...+.++.+
T Consensus 95 ~l~~~ir~~~~~~-~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g-------ip~~~~v~i~~~~~~~~l~l~~~~y~ 166 (439)
T PRK00701 95 DLAQACRDRYPRP-VVWFLWIQAELAIMATDLAEVIGAAIALKLLFG-------IPLLQGALITALDTFLILMLQRRGFR 166 (439)
T ss_pred CHHHHHHHHCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 7999999999985 445555555555566666655555555544431 223333333332 222222355566
Q ss_pred hhhHHH
Q 024732 174 SLRHIN 179 (263)
Q Consensus 174 ~l~~~S 179 (263)
.+.++.
T Consensus 167 ~~E~i~ 172 (439)
T PRK00701 167 PLEAII 172 (439)
T ss_pred HHHHHH
Confidence 666664
No 91
>PRK10484 putative transporter; Provisional
Probab=39.21 E-value=3.5e+02 Score=25.80 Aligned_cols=89 Identities=6% Similarity=-0.120 Sum_probs=50.8
Q ss_pred ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (263)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (263)
...|+-+|+-..+.+..+.++ ...++.|-...+.|+...... ...........+++.+-.++ .+ ..|..|.-+
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r---~~--~~T~~e~l~ 108 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-VTAAIALIILALIFLPRYLK---SG--ITTIPDFLE 108 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHh---cC--CccHHHHHH
Confidence 456888888888888777665 567788877777786432111 11111111223333322222 23 348999988
Q ss_pred HHhCchhHHHHHHHHHH
Q 024732 103 DVLGSGWMFYFVIFIQT 119 (263)
Q Consensus 103 ~~~G~~~g~~~~~~~~~ 119 (263)
+-||++ .+.+......
T Consensus 109 ~Ryg~~-~~~~~~~~~~ 124 (523)
T PRK10484 109 ERYDKT-TRRIVSILFL 124 (523)
T ss_pred HhcCch-hHHHHHHHHH
Confidence 889986 5555444433
No 92
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=33.12 E-value=3.7e+02 Score=24.35 Aligned_cols=45 Identities=29% Similarity=0.228 Sum_probs=39.1
Q ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 024732 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS 142 (263)
Q Consensus 97 y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 142 (263)
...+.+...|+ |+.+++.+...+.++++..+++...++.+..+.+
T Consensus 260 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 260 FAVLASAVGGS-WLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcccccc-ccccccccccccccccccchhhcchhhccccccc
Confidence 66778888888 7889999999999999999999999888887654
No 93
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=32.94 E-value=4.3e+02 Score=25.23 Aligned_cols=140 Identities=9% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024732 59 WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQ 138 (263)
Q Consensus 59 ~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 138 (263)
.+++..+.+.++++.-++.++...-.....+.+++ +.++.....+..-....+..+..++ .+..+++.-.|...
T Consensus 341 ~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~--g~~~a~~~~l~~lP~~~i~~~~~li----l~~~f~vTs~DS~~ 414 (485)
T PF02028_consen 341 LVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQ--GPEAALFAFLEQLPLSKILSILFLI----LIFIFFVTSADSAT 414 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH---HHHHHHHHHHTSTTHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhc--chhhHHHHHHHHhhHHHHHHHHHHH----HHHHHHHhcccHHH
Q ss_pred hhhcccccc-----ccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Q 024732 139 IMYSDLYPN-----GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205 (263)
Q Consensus 139 ~~~~~~~~~-----~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~ 205 (263)
..+...+.+ ....+..|.++.+++-+-+...-.++.++-.+.++-+ =+.++.+++..++.+...+.
T Consensus 415 ~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l-P~~~v~~~~~~~~~k~l~~d 485 (485)
T PF02028_consen 415 YVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL-PFSFVMLLMCISFIKALKED 485 (485)
T ss_dssp HHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=32.62 E-value=4.5e+02 Score=25.44 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhhhhhhhccccccc-----cchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024732 124 GVGIGAILLAGECLQIMYSDLYPNG-----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACI 198 (263)
Q Consensus 124 g~~i~y~i~~~~~l~~~~~~~~~~~-----~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~~ 198 (263)
..+..+.+.-.|....++...+.++ ..-+..|.++.+++-.-+.+.-.++.+.-.+.+..+ =+..+.+++..++
T Consensus 413 ~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al-PF~~vll~~~~sl 491 (537)
T COG1292 413 LVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL-PFSLVLLVMMFSL 491 (537)
T ss_pred HHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-cHHHHHHHHHHHH
Confidence 4566677777888877776544222 233555666555554445555557777766666543 3333334444445
Q ss_pred hcC
Q 024732 199 NAG 201 (263)
Q Consensus 199 ~~~ 201 (263)
.++
T Consensus 492 ~k~ 494 (537)
T COG1292 492 IKD 494 (537)
T ss_pred HHH
Confidence 443
No 95
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=27.42 E-value=5.7e+02 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=25.9
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 141 (263)
.|..|++.++.+......+++..+.+...+..+..+-
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ama 344 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMA 344 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433677777777777777777777777777776554
No 96
>PRK09928 choline transport protein BetT; Provisional
Probab=26.84 E-value=6.6e+02 Score=25.19 Aligned_cols=60 Identities=5% Similarity=0.089 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhhhhhhhcccccc-----c---cchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 125 VGIGAILLAGECLQIMYSDLYPN-----G---SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 125 ~~i~y~i~~~~~l~~~~~~~~~~-----~---~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
.+..|.+.-+|+-..++..++++ . ...+..|.++.+++-+-+...-.++.+.-.+.++.+
T Consensus 418 l~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~al 485 (679)
T PRK09928 418 TGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGL 485 (679)
T ss_pred HHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34557777778777766654422 1 244667777666665556666677777777766543
No 97
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.39 E-value=3.4e+02 Score=22.02 Aligned_cols=86 Identities=12% Similarity=-0.028 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh-cCCCcchhhHHHHHHHHHHH
Q 024732 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSL 187 (263)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~-~~r~l~~l~~~S~~~~~~~~ 187 (263)
+|..+--+++.+..++.+..|-.+.++.-... +.--.-..+|.+++.++ =|+- .+|.++++.+=..+..+|..
T Consensus 68 ~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W-----~Gi~YG~~~W~ivF~~l-nP~fp~~~~~~~l~~nTiiT~~Ciy 141 (173)
T PF11085_consen 68 LGNLIGIVFIGVFSIVAALLYYALLKKFKGPW-----PGILYGLAWWAIVFFVL-NPIFPMIKPVTELDWNTIITTLCIY 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHh-cccccCChhhhhCchhHHHHHHHHH
Confidence 45444445555566666666666665432111 00001122232222222 1222 56677777777777777665
Q ss_pred HHHHHHHHHHHhc
Q 024732 188 GYSFLVVGACINA 200 (263)
Q Consensus 188 ~~~~iiv~~~~~~ 200 (263)
..-.+-++.++..
T Consensus 142 iLyGlFIGYSIsf 154 (173)
T PF11085_consen 142 ILYGLFIGYSISF 154 (173)
T ss_pred HHHHHHhceeehh
Confidence 5444445555543
No 98
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=20.64 E-value=5.6e+02 Score=24.31 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=34.3
Q ss_pred hhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhH
Q 024732 46 TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (263)
Q Consensus 46 GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (263)
.+-.||-.+.+..++--.--+..+.++.+.|-++=-+..+..+ + ....|+|-.+ +|. |+
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~-~--~~~~y~~gvr--~G~-~~ 310 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV-N--QGAKYDDGVR--AGA-FG 310 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC-c--chhHHHHHHH--HHH-HH
Confidence 3457899999988776555555555555555544334444321 1 1236777666 666 66
No 99
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=20.34 E-value=1.5e+02 Score=18.85 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH
Q 024732 34 AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT 73 (263)
Q Consensus 34 a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~ 73 (263)
..+-+.-...+.|+..+|....+=|+....+++.+.+.++
T Consensus 7 ~~f~i~~~~~~iGl~~~~~~l~~KGy~~~~~l~~l~s~~t 46 (53)
T PF05360_consen 7 ISFGISIVLMLIGLWNAPLDLSEKGYYAMGLLFLLFSAFT 46 (53)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3455566778899999999999989876666555555443
Done!