Query 024732
Match_columns 263
No_of_seqs 123 out of 1269
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.2 1.4E-09 4.8E-14 99.3 20.5 217 25-253 6-223 (445)
2 3gia_A Uncharacterized protein 98.8 2.3E-07 7.8E-12 84.5 18.7 212 26-252 5-219 (444)
3 4djk_A Probable glutamate/gamm 98.4 1.7E-05 5.9E-10 73.3 18.1 216 25-252 9-232 (511)
4 2jln_A MHP1; hydantoin, transp 98.0 0.00015 5E-09 67.5 16.0 171 1-184 1-173 (501)
5 3dh4_A Sodium/glucose cotransp 90.9 9.8 0.00034 35.0 17.9 146 25-184 18-165 (530)
6 2xq2_A Sodium/glucose cotransp 88.7 16 0.00053 34.2 18.2 146 25-184 47-194 (593)
7 3l1l_A Arginine/agmatine antip 64.0 73 0.0025 27.7 15.1 46 95-141 260-305 (445)
8 3gia_A Uncharacterized protein 58.2 67 0.0023 28.0 10.1 45 96-141 259-303 (444)
9 2a65_A Leutaa, Na(+):neurotran 49.9 1.5E+02 0.0053 27.1 17.6 220 29-256 9-278 (519)
10 2wsw_A BCCT family betaine/car 18.6 5.4E+02 0.018 23.4 15.7 89 93-185 177-270 (509)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.21 E-value=1.4e-09 Score=99.28 Aligned_cols=217 Identities=12% Similarity=-0.033 Sum_probs=132.4
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
.+|+-++++.....+.+++|+|++.+|...++.|. .+.+..++.+++....+..+.|...+.|+.| .+.+..++.
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~ 80 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG----GSYAYARRC 80 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT----THHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CchhhHHhH
Confidence 35778899999999999999999999999999997 4788888888888888888888887755433 566677889
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
+||.+| .+..+...+........+....++.+...++... .......+.++.. +++-..-.+..+...++..+...
T Consensus 81 ~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~in~~g~~~~~~~~~~~~~ 156 (445)
T 3l1l_A 81 FGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--DPWVLTITCVVVL-WIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_dssp SCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG--SHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc--ccHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHH
Confidence 999655 7778777777666777777777887776654321 1111211111111 11222223344555554443333
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS 253 (263)
Q Consensus 185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~ 253 (263)
..+...+++++..+.....++ ...+..+....+...++.++....|+| |........+|+|||++.
T Consensus 157 ~~i~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ 223 (445)
T 3l1l_A 157 LALIPIVGIAVFGWFWFRGET---YMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRN 223 (445)
T ss_dssp HHHHHHHHHHHTTSTTCCCCC---CCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhh---cccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccc
Confidence 222222112121111111100 000111111112346788899999999 999999999999999653
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.83 E-value=2.3e-07 Score=84.53 Aligned_cols=212 Identities=8% Similarity=-0.034 Sum_probs=127.4
Q ss_pred ccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732 26 ESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (263)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (263)
+|+-++++.....+.+++|+|++..| .+....|- ...+..++.+++...+...+.|.....|+.| ..-+.+++.
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G----g~y~~~~~~ 79 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA----GPIAFIHKA 79 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT----THHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----cHHHhHHHH
Confidence 57789999999999999999999887 45566676 6777788888888888889999888765433 456778888
Q ss_pred hCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732 105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (263)
Q Consensus 105 ~G~~~-g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~ 183 (263)
+|++| +.. +.....+........+....++.+...++.. +........ .+...+++-..-.+..+...++..+..
T Consensus 80 ~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (444)
T 3gia_A 80 IGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAP--INTFNIAIT-EIGIVAFFTALNFFGSKAVGRAEFFIV 155 (444)
T ss_dssp HCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CCHHHHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99864 323 3444445555556667777777777665321 111111111 111112222223334555555554443
Q ss_pred HHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 184 ~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
...+...+++++..+.....+ .+.. ......+.+.+.++....|+| |.......-+|+|||++
T Consensus 156 ~~~i~~~~~~ii~~~~~~~~~-----~~~~-~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r 219 (444)
T 3gia_A 156 LVKLLILGLFIFAGLITIHPS-----YVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK 219 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCGG-----GTSC-CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred HHHHHHHHHHHHHHHHHcChh-----hcCC-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence 322222222222223222111 1110 011123346778888889999 99999999999999976
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.39 E-value=1.7e-05 Score=73.34 Aligned_cols=216 Identities=10% Similarity=0.024 Sum_probs=108.0
Q ss_pred cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHccc--cccccCcccccHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD--HCEKAGRRHIRFRELA 101 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~-~~t~~lL~~~~~--~~~~~~~~~~sy~~l~ 101 (263)
.+|+-++++.....+..++| +.++|. .+..|.. .++..++.+++. ...+..+.|... ..| .| ..-..+
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----G~y~~~ 79 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----GVFAWV 79 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------CHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----ChhhhH
Confidence 46788999999999988886 567775 5677753 333333333332 236777777777 655 44 456677
Q ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--ccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY--SDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (263)
Q Consensus 102 ~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S 179 (263)
++.+|+++| .+......+........+....++.+...+ +.+. ........+.++..++. -+.-.+..+...++.
T Consensus 80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~-~~in~~g~~~~~~~~ 156 (511)
T 4djk_A 80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN-EDPITKTIAALIILWAL-ALTQFGGTKYTARIA 156 (511)
T ss_dssp HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT-SCSSHHHHHHHHHHHHH-HHHHHTCSSSHHHHT
T ss_pred HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCcHHHHHHHHHHHHHH-HHHHHhChHHHHHHH
Confidence 888999766 777777766666666666666666665442 2111 11222222212222222 222233444444444
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCcCCCCCCCcccccC-cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732 180 LVSLLLS-LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI 252 (263)
Q Consensus 180 ~~~~~~~-~~~~~iiv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~ 252 (263)
.+..... +...++++...+.....++....+.+..+ .+.......+.++...+|+| |.......-+|+|||++
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k 232 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR 232 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCccc
Confidence 3332211 11111112222221111110000011100 01111113445677889999 99999999999999976
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.03 E-value=0.00015 Score=67.51 Aligned_cols=171 Identities=12% Similarity=0.002 Sum_probs=99.4
Q ss_pred CC-CCCCCCccccccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHh-hChhHHHHHHHHHHHHHHHHHH
Q 024732 1 MA-QPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRG-LGWGLGFTCLTVMGFVTFYSYY 78 (263)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~i~g~i~l~~~~~~~~~t~~ 78 (263)
|+ ++++.|+.+|+..-+.-. ..+|+.++++-....+...++.+...+...+.. .++..+++..++-.++...-.-
T Consensus 1 m~~~~~~~~~~~e~~~i~pvp---~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~ 77 (501)
T 2jln_A 1 MNSTPIEEARSLLNPSNAPTR---YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLF 77 (501)
T ss_dssp -------CCCBCCCSTTSCCC---GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccccCCCCCCC---hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44 345556655543222111 124666766666666666666665555544443 3344555544444444443333
Q ss_pred HHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHH
Q 024732 79 LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM 158 (263)
Q Consensus 79 lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i 158 (263)
++.....+ .| .+|..+.|..||+ +|..+..+...+.++|-........++.+..++.... +......+.++
T Consensus 78 l~~~~G~~---~G---l~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~--g~~~~~v~~~i 148 (501)
T 2jln_A 78 FTQSAAIR---WG---INFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT--GFTNLPLWIVI 148 (501)
T ss_dssp HHTHHHHH---HC---CCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHhHHHhh---cC---CChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHH
Confidence 44443332 33 3799999999999 5888889888888899888888888998887764221 01113344566
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732 159 VTVVMIVLSQLPTFHSLRHINLVSLL 184 (263)
Q Consensus 159 ~~~~~lpl~~~r~l~~l~~~S~~~~~ 184 (263)
+.++.+++.+ .-++.++++..+...
T Consensus 149 ~~~l~~~~~~-~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 149 FGAIQVVTTF-YGITFIRWMNVFASP 173 (501)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence 6677777764 456777776666554
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=90.85 E-value=9.8 Score=35.04 Aligned_cols=146 Identities=10% Similarity=0.131 Sum_probs=77.3
Q ss_pred cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
..|+-+|+...+.+..+.++ .-.+++|-...+.|+........ .++.-...+..+....++ .+ ..|..|.-++
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~---~~--~~T~~e~l~~ 91 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KG--IYTIPEFVEK 91 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH---TT--CCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH---cC--CccHHHHHHH
Confidence 35777888888888777776 56789998888889753211111 111111122222222232 22 4599999999
Q ss_pred HhCchhHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTAI-NTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~-~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
-||++ .|.+..+...+. .+..+.+-+...+..++.++. ++...-+++..++..-.+..--++...++-.+=
T Consensus 92 Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 92 RFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp HTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99985 666655543322 222222233334455555432 334444455566666667777777777777665
Q ss_pred HH
Q 024732 183 LL 184 (263)
Q Consensus 183 ~~ 184 (263)
.+
T Consensus 164 ~~ 165 (530)
T 3dh4_A 164 VF 165 (530)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=88.67 E-value=16 Score=34.20 Aligned_cols=146 Identities=10% Similarity=0.123 Sum_probs=74.1
Q ss_pred cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
..|+-+++...+.+..+.++ ...+++|-...+.|+........ .++.....+..+..-.++ .+ ..|..|.-++
T Consensus 47 aGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r---~~--~~T~~e~l~~ 120 (593)
T 2xq2_A 47 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KG--IYTIPEFVEK 120 (593)
T ss_dssp ----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH---TT--CCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh---CC--CCCcHHHHHH
Confidence 34677888888888766665 55679998888889742211111 010111112222222232 33 4599999998
Q ss_pred HhCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732 104 VLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~ 182 (263)
=||++ .|.+..+...+ ..+.....-+...+..++.++. ++....+++..++....+..--++...++-.+=
T Consensus 121 Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ 192 (593)
T 2xq2_A 121 RFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 192 (593)
T ss_dssp HTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred HccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 89985 55555544332 2222222233334555555542 233333445555556666766677776666554
Q ss_pred HH
Q 024732 183 LL 184 (263)
Q Consensus 183 ~~ 184 (263)
.+
T Consensus 193 ~i 194 (593)
T 2xq2_A 193 VF 194 (593)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=63.99 E-value=73 Score=27.71 Aligned_cols=46 Identities=28% Similarity=0.153 Sum_probs=39.0
Q ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024732 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (263)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 141 (263)
..+.++.+..+|+ |+..++.+...+..+++..+++...++.+..+-
T Consensus 260 ~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a 305 (445)
T 3l1l_A 260 SPFGDAARMALGD-TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_dssp CTHHHHHHHHHCT-THHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999 788888999999999999999888888776544
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=58.20 E-value=67 Score=28.00 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=36.2
Q ss_pred cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024732 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (263)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 141 (263)
...++.+..+|+ |+..++.+...+..+++..+.+...++.+..+-
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a 303 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLA 303 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888 788888888888888888888888777776554
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=49.92 E-value=1.5e+02 Score=27.06 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=104.8
Q ss_pred chHHHHHHHHHhhhhhhh-hhHHHHHHHhhC----hhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLG----WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G----~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
+|-.+-++..+.+.+|.| +.=.||-..+-| +++=+++++++++=-.+.=..+.+-..+..+.+ ....|..++
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~-~i~a~~~l~-- 85 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGT-TPAIFYLLW-- 85 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCS-HHHHHHHHS--
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCC-HHHHHHHhc--
Confidence 455778888889999998 788998887777 333344444444433343344444111000001 112344443
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccc-----------------------------------c
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-----------------------------------G 148 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~-----------------------------------~ 148 (263)
+++.. ..+.....+..+..++-|.++++-.+..++..+..+ +
T Consensus 86 --~~~~~-~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g 162 (519)
T 2a65_A 86 --RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPIL 162 (519)
T ss_dssp --CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBC
T ss_pred --CCcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCccccc
Confidence 22111 223444444455555556655555444333221100 0
Q ss_pred c--chhhHHHHHHHHHHHHhhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhcCcCC--CCCCCcccccCcchhhh--
Q 024732 149 S--LKLYEFIAMVTVVMIVLSQLPTF-HSLRHINLVSLLLSLGYSFLVVGACINAGFSK--NAPPKDYSLESSKSARI-- 221 (263)
Q Consensus 149 ~--~~~~~~~~i~~~~~lpl~~~r~l-~~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~--~~~~~~~~~~~~~~~~~-- 221 (263)
. .....+.+++ .++.-++..|-+ +...+++.+-...-++..++++++++...-+. ..+..++-+. ++..++
T Consensus 163 ~~~~~~~~~~~~~-w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~-Pd~s~L~~ 240 (519)
T 2a65_A 163 KPSLFAYIVFLIT-MFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT-PDFEKLKD 240 (519)
T ss_dssp CCCHHHHHHHHHH-HHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS-CCTTSTTC
T ss_pred CccHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-CCHHHhCC
Confidence 0 1112222222 223345666666 44555655544322223333334443321100 0000011111 111122
Q ss_pred -hhHHHHHHHHHHHh--ccCchHHhHHhcchhhhhhhh
Q 024732 222 -FSAFTSISIIAAIF--GNGILPEIQVTSTLLYISMFS 256 (263)
Q Consensus 222 -~~~~~a~g~~~faf--~h~~i~~I~~~M~~p~~~~~~ 256 (263)
.-...|.+...|+. |.+.+.+.-+.+|+.++-.++
T Consensus 241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~ 278 (519)
T 2a65_A 241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLS 278 (519)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhh
Confidence 13678899999999 899999988888887764443
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=18.63 E-value=5.4e+02 Score=23.44 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=47.5
Q ss_pred ccccHHHHH-HHHhCchhHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc
Q 024732 93 RHIRFRELA-ADVLGSGWMFYFVIFIQTAINTGVGIGAIL---LAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ 168 (263)
Q Consensus 93 ~~~sy~~l~-~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i---~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 168 (263)
|..-|+-++ ++..|+ +|+.+=.+.++.+.+|..++.=. .++.-++.++.. ++ ....+..+++...++.-++-
T Consensus 177 ss~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi--~~-~~~~qi~ii~vit~~~~~Sa 252 (509)
T 2wsw_A 177 SSTLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGI--PH-TLQLDAIIISCWILLNAICV 252 (509)
T ss_dssp GGGCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CC-ccHHHHHHHHHHHHHHHHHH
Confidence 334688889 888888 68654345667777776655322 234444444421 22 11222222223334455666
Q ss_pred CCCc-chhhHHHHHHHHH
Q 024732 169 LPTF-HSLRHINLVSLLL 185 (263)
Q Consensus 169 ~r~l-~~l~~~S~~~~~~ 185 (263)
..-+ +-.+++|-+....
T Consensus 253 ~sGl~kGIk~LS~~N~~l 270 (509)
T 2wsw_A 253 AFGLQKGVKIASDVRTYL 270 (509)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 6666 5666777655443
Done!