Query 024732
Match_columns 263
No_of_seqs 123 out of 1269
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 13:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 41.8 92 0.0067 25.9 20.4 107 29-141 5-116 (509)
2 d1jb0l_ f.31.1.1 (L:) Photosys 16.0 1.7E+02 0.012 20.2 7.3 25 224-248 122-147 (151)
3 d1o82a_ a.64.2.1 (A:) Bacterio 9.9 93 0.0068 17.9 2.3 11 30-40 10-20 (70)
4 d1sfea1 a.4.2.1 (A:93-176) Ada 9.2 1.1E+02 0.0077 19.0 2.7 15 93-107 19-33 (84)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.9 3.1E+02 0.023 20.3 5.1 29 45-73 14-42 (248)
6 d1qnta1 a.4.2.1 (A:92-176) O6- 6.8 2.1E+02 0.015 17.5 3.3 15 93-107 19-33 (85)
7 d1jfia_ a.22.1.3 (A:) Negative 6.4 2.1E+02 0.015 16.3 3.0 35 69-103 30-64 (66)
8 d1n1jb_ a.22.1.3 (B:) Nuclear 6.1 2.7E+02 0.02 16.2 4.1 36 72-107 31-66 (78)
9 d1q90g_ f.23.26.1 (G:) PetG su 5.9 1.6E+02 0.012 14.1 1.8 16 57-72 7-22 (30)
10 d1mgta1 a.4.2.1 (A:89-169) O6- 4.8 1.2E+02 0.0089 18.5 1.1 18 93-112 20-37 (81)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=41.75 E-value=92 Score=25.93 Aligned_cols=107 Identities=11% Similarity=0.005 Sum_probs=63.3
Q ss_pred chHHHHHHHHHhhhhhhh-hhHHHHHHHhh-Ch---hHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGL-GW---GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 29 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~-G~---i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
+|-.+-++..+...+|.| +.-.||-..+- |. ++=.++++++++=-.+-=..+.+..++ + ....+..+...
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~----g-~i~~~~~i~~~ 79 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA----Q-GHGTTPAIFYL 79 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----T-TCCSHHHHHHH
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC----C-cccHHHHHHHH
Confidence 455778888889999986 44589776554 52 222333333333333333344444332 1 13378888877
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024732 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (263)
Q Consensus 104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 141 (263)
..+.++. ..+.....+.++..++-|.+..+-.+..+.
T Consensus 80 ~~~~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~ 116 (509)
T d2a65a1 80 LWRNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAI 116 (509)
T ss_dssp HSCSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665434 334666666777777778888777665544
No 2
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=15.98 E-value=1.7e+02 Score=20.20 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHh-ccCchHHhHHhcc
Q 024732 224 AFTSISIIAAIF-GNGILPEIQVTST 248 (263)
Q Consensus 224 ~~~a~g~~~faf-~h~~i~~I~~~M~ 248 (263)
++.++|-.+||| .-..++-++.-|+
T Consensus 122 ~~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 122 FVGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhccccHHHHHHHHHcchHHHHHHHH
Confidence 568899999999 7666666666655
No 3
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=9.90 E-value=93 Score=17.86 Aligned_cols=11 Identities=0% Similarity=-0.160 Sum_probs=4.8
Q ss_pred hHHHHHHHHHh
Q 024732 30 EWWHAGFHLTT 40 (263)
Q Consensus 30 s~~~a~~~l~~ 40 (263)
+.-..+.|+.+
T Consensus 10 ~ia~~vlniv~ 20 (70)
T d1o82a_ 10 AVAGTVLNVVE 20 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 33444444443
No 4
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=9.23 E-value=1.1e+02 Score=18.97 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=11.4
Q ss_pred ccccHHHHHHHHhCc
Q 024732 93 RHIRFRELAADVLGS 107 (263)
Q Consensus 93 ~~~sy~~l~~~~~G~ 107 (263)
+..||+|+|+.+--+
T Consensus 19 ~v~TYg~iA~~~g~~ 33 (84)
T d1sfea1 19 ETVSYQQLANAIGKP 33 (84)
T ss_dssp CCEEHHHHHHHTTCT
T ss_pred CeeeHHHHHHHhCCc
Confidence 356999999986544
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.87 E-value=3.1e+02 Score=20.31 Aligned_cols=29 Identities=7% Similarity=-0.063 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHhhChhHHHHHHHHHHHHH
Q 024732 45 PTILTLPYVFRGLGWGLGFTCLTVMGFVT 73 (263)
Q Consensus 45 ~GiL~LP~af~~~G~i~g~i~l~~~~~~~ 73 (263)
.++.+.|.++++.-|.++.++++...++.
T Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 14 LVGYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 44567899999999988888777776555
No 6
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.81 E-value=2.1e+02 Score=17.49 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=11.2
Q ss_pred ccccHHHHHHHHhCc
Q 024732 93 RHIRFRELAADVLGS 107 (263)
Q Consensus 93 ~~~sy~~l~~~~~G~ 107 (263)
+..||+|+|+.+--+
T Consensus 19 ~v~TYg~iA~~~g~p 33 (85)
T d1qnta1 19 EVISYQQLAALAGNP 33 (85)
T ss_dssp CCEEHHHHHHHTTCT
T ss_pred CcccHHHHHHHcCCc
Confidence 356999999986444
No 7
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.37 E-value=2.1e+02 Score=16.27 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732 69 MGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (263)
Q Consensus 69 ~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (263)
....-++..++.-++.......+.+..+|.|+.+.
T Consensus 30 ~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~a 64 (66)
T d1jfia_ 30 SRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 33444555566655555422234456789998754
No 8
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=2.7e+02 Score=16.16 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHccccccccCcccccHHHHHHHHhCc
Q 024732 72 VTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS 107 (263)
Q Consensus 72 ~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~ 107 (263)
...+..++.-++.....+.+.+..+|.|+.+.+-..
T Consensus 31 ~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~~ 66 (78)
T d1n1jb_ 31 AQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhcC
Confidence 344445555454443223444567999999876543
No 9
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.90 E-value=1.6e+02 Score=14.12 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=9.7
Q ss_pred hChhHHHHHHHHHHHH
Q 024732 57 LGWGLGFTCLTVMGFV 72 (263)
Q Consensus 57 ~G~i~g~i~l~~~~~~ 72 (263)
+|.++|.+=..+.+++
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 4666676666665543
No 10
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=4.84 E-value=1.2e+02 Score=18.54 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=12.5
Q ss_pred ccccHHHHHHHHhCchhHHH
Q 024732 93 RHIRFRELAADVLGSGWMFY 112 (263)
Q Consensus 93 ~~~sy~~l~~~~~G~~~g~~ 112 (263)
+..||+|+|+.+ |.. .|.
T Consensus 20 ~v~TYg~iA~~~-g~~-~Ra 37 (81)
T d1mgta1 20 SVITYGDLAKAL-NTS-PRA 37 (81)
T ss_dssp CCEEHHHHHHHT-TSC-HHH
T ss_pred CeEeHHHHHHHc-CCc-HHH
Confidence 356999999865 553 544
Done!