Query 024733
Match_columns 263
No_of_seqs 143 out of 1493
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 4.7E-07 1.6E-11 65.2 7.0 72 78-149 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 4.3E-07 1.5E-11 67.8 4.0 71 78-148 33-104 (137)
3 2b2h_A AMT-1, ammonium transpo 39.9 1.8E+02 0.0063 25.0 19.2 89 111-204 230-318 (399)
4 4dve_A Biotin transporter BIOY 25.0 2.3E+02 0.008 21.7 10.9 95 68-167 10-112 (198)
5 1u7g_A Probable ammonium trans 13.6 6E+02 0.02 21.6 19.3 85 113-201 243-328 (385)
6 3b9w_A Ammonium transporter fa 10.2 8E+02 0.027 21.1 18.7 92 79-171 181-277 (407)
7 3l1l_A Arginine/agmatine antip 5.5 1.2E+03 0.041 19.2 8.4 15 154-168 411-425 (445)
8 3arc_T Photosystem II reaction 4.3 4.8E+02 0.017 13.6 1.7 13 118-130 18-30 (32)
9 3hd6_A Ammonium transporter RH 4.3 1.7E+03 0.06 19.5 23.0 91 113-206 267-364 (490)
10 2ks1_B Epidermal growth factor 4.1 6.4E+02 0.022 14.0 3.1 22 47-68 22-43 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.44 E-value=4.7e-07 Score=65.17 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhhhhccccchhHHHHH-hhhHHHHHHHHHHHHhhcccChhhHHHHhhhhhhheeeeccC
Q 024733 78 ISALSFVFCISVVFGNVSLRFLPVSFNQAV-GATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGE 149 (263)
Q Consensus 78 ~~~~~~~~~~~~~~~~~sl~~~~~~~~~vi-~~~~pi~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~l~~~~~ 149 (263)
.+...+++..++.+...++++.|.+.+..+ ..+.|+++++++++++||++++.+++++.++++|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344456678888999999999999999888 899999999999999999999999999999999998876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.30 E-value=4.3e-07 Score=67.81 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhhhhccccchhHHHHH-hhhHHHHHHHHHHHHhhcccChhhHHHHhhhhhhheeeecc
Q 024733 78 ISALSFVFCISVVFGNVSLRFLPVSFNQAV-GATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGG 148 (263)
Q Consensus 78 ~~~~~~~~~~~~~~~~~sl~~~~~~~~~vi-~~~~pi~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~l~~~~ 148 (263)
.+...+++.+++.+.+.++++.+++.+..+ ..+.|++++++++++++|+++..+++|+.++++|+.+....
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344556778899999999999999998888 89999999999999999999999999999999999887543
No 3
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=39.86 E-value=1.8e+02 Score=25.03 Aligned_cols=89 Identities=11% Similarity=-0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcccChhhHHHHhhhhhhheeeeccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 024733 111 TPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGEPSFHLFGFLMCIAATAARALKSVLQGILLSSEGEKLNSMNL 190 (263)
Q Consensus 111 ~pi~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~ 190 (263)
.-+..++.+++. +|++......-.+ ..+|.+...-+.-..+-..+.++++.+..-....+.+|+. -|+..+.+..
T Consensus 230 g~l~~~~~~~~~--gk~~~~~~~nG~l-AGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~--iDD~l~a~~v 304 (399)
T 2b2h_A 230 AGFVWMVIGWIK--GKPGSLGIVSGAI-AGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKK--IDESLDAWAI 304 (399)
T ss_dssp HHHHHHHHHHHH--SCCCHHHHHHHHH-HHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCTTCHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHH-HhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCceec
Confidence 344445556655 6777765444332 2333333333333334455566666555444443444443 4455566655
Q ss_pred HHHHHHHHHHHHHH
Q 024733 191 LLYMAPIAVVLLLP 204 (263)
Q Consensus 191 ~~~~~~~~~~~ll~ 204 (263)
=...-.++.+....
T Consensus 305 Hgv~Gi~G~l~~gl 318 (399)
T 2b2h_A 305 HGIGGLWGSVAVGI 318 (399)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 55555555444433
No 4
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.96 E-value=2.3e+02 Score=21.68 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=63.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhhh---ccccchhHHHHHhhhHHHHHHHHHHHHhhcccChhhHHHHhhhhhhhee
Q 024733 68 TIRSRLQFLKISALSFVFCISVVFGNVS---LRFLPVSFNQAVGATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVII 144 (263)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~~~~~~~~~vi~~~~pi~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~l 144 (263)
.++++++.|.....+++-++...+...+ +-..|++ ..++.+.+++.+.++..++=.....+=++++.+|.=+
T Consensus 10 am~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVP-----iTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPV 84 (198)
T 4dve_A 10 AMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVP-----IILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPV 84 (198)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCC-----BCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcC-----ccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCcc
Confidence 4456666777777777666655555432 3333444 4578889999999998888888888888999999988
Q ss_pred eeccCCcc-----hHHHHHHHHHHHHHH
Q 024733 145 ASGGEPSF-----HLFGFLMCIAATAAR 167 (263)
Q Consensus 145 ~~~~~~~~-----~~~G~~~~l~a~~~~ 167 (263)
.+.++... ..-|++++..-+..-
T Consensus 85 Fagg~gG~~~l~gPTgGYLiGF~~aA~v 112 (198)
T 4dve_A 85 LTGGNGGAASFLGPSGGYRIAWLFTPFL 112 (198)
T ss_dssp BTTTBCCSGGGGSTTHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHhcchhHHHHHHHHHHHH
Confidence 77654321 235777766554433
No 5
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=13.60 E-value=6e+02 Score=21.64 Aligned_cols=85 Identities=6% Similarity=-0.132 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcccChhhHHHHhhhhhhheeeeccCCcchHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCHHHHH
Q 024733 113 FFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGEPSFHLFGFLMCIAATAARALKSVLQG-ILLSSEGEKLNSMNLL 191 (263)
Q Consensus 113 i~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k-~~~~~~~~~~~~~~~~ 191 (263)
+..++.+++ .++|++......-.+. ..|.+...-+.-..+-..+.++++.+..-....+.| |+. -|+..+.+..=
T Consensus 243 l~~~~~~~~-~~gk~~~~~~~nG~lA-GLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~--iDD~l~a~~vH 318 (385)
T 1u7g_A 243 LGWIFGEWA-LRGLPSLLGACSGAIA-GLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVH 318 (385)
T ss_dssp HHHHHHHHH-HHSSCCHHHHHHHHHH-HHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHH-hhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCCCCCCEeec
Confidence 344444544 4567777655443322 333333333333334456666666666554444333 432 33344444443
Q ss_pred HHHHHHHHHH
Q 024733 192 LYMAPIAVVL 201 (263)
Q Consensus 192 ~~~~~~~~~~ 201 (263)
...-.++.+.
T Consensus 319 gv~Gi~G~l~ 328 (385)
T 1u7g_A 319 GVCGIVGCIM 328 (385)
T ss_dssp HHHHHHHHHH
T ss_pred ccccHHHHHH
Confidence 3333344333
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=10.18 E-value=8e+02 Score=21.06 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHh-----hhHHHHHHHHHHHHhhcccChhhHHHHhhhhhhheeeeccCCcch
Q 024733 79 SALSFVFCISVVFGNVSLRFLPVSFNQAVG-----ATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGEPSFH 153 (263)
Q Consensus 79 ~~~~~~~~~~~~~~~~sl~~~~~~~~~vi~-----~~~pi~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~l~~~~~~~~~ 153 (263)
.+...+.-.+....|.++......-..+++ +..-+..+++++++.++|++......-.+ ..+|.+...-+.-..
T Consensus 181 ~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG~L-AGLVAITa~~~~v~p 259 (407)
T 3b9w_A 181 MLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANAAL-AGGVAIGSVCNIVGP 259 (407)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHTT-HHHHHHTTTTTTSCH
T ss_pred HHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhh-hhhheeccCCCCCCH
Confidence 333344445666667664332222222222 22233334455544557788766554432 244444444444333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024733 154 LFGFLMCIAATAARALKS 171 (263)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~ 171 (263)
+-..+.++++.+..-...
T Consensus 260 ~~A~iIG~iaG~i~~~~~ 277 (407)
T 3b9w_A 260 VGAFVIGLLGGAISVVGF 277 (407)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666665554444
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=5.54 E-value=1.2e+03 Score=19.19 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024733 154 LFGFLMCIAATAARA 168 (263)
Q Consensus 154 ~~G~~~~l~a~~~~a 168 (263)
..|..+.+.+...|.
T Consensus 411 ~~~~~~~~~g~~~y~ 425 (445)
T 3l1l_A 411 MWSFVTLMVITAMYA 425 (445)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456665555555443
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.32 E-value=4.8e+02 Score=13.55 Aligned_cols=13 Identities=8% Similarity=-0.033 Sum_probs=7.8
Q ss_pred HHHHHhhcccChh
Q 024733 118 FAYLMTLKREAWL 130 (263)
Q Consensus 118 ~~~~~~~~~~~~~ 130 (263)
+-.++++|+|...
T Consensus 18 FFAI~FRePPri~ 30 (32)
T 3arc_T 18 FFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHTSCCCCCC
T ss_pred HHhhhhcCCCCCC
Confidence 4455677776543
No 9
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=4.30 E-value=1.7e+03 Score=19.48 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHHHHHh-hcccChhhHHHHhhhhhhheeeeccCC-cchHHHHHHHHHHHHHHHHHHH-----HHHHhhccCCCCC
Q 024733 113 FFTAVFAYLMT-LKREAWLTYVTLIPVVTGVIIASGGEP-SFHLFGFLMCIAATAARALKSV-----LQGILLSSEGEKL 185 (263)
Q Consensus 113 i~~~i~~~~~~-~~~~~~~~~~~~~l~~~Gv~l~~~~~~-~~~~~G~~~~l~a~~~~a~~~v-----~~k~~~~~~~~~~ 185 (263)
+..+++++++. ++|++......-. ...+|++....+. -..+...+.++++.+..-.... +.+|+. -|+..
T Consensus 267 lt~~~~s~l~~~~gK~s~~~~~nG~-LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~--iDD~l 343 (490)
T 3hd6_A 267 LTSVAISSALHKKGKLDMVHIQNAT-LAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLH--IQDTC 343 (490)
T ss_dssp HHHHHHHHHTSTTCCCCHHHHHHGG-GHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCTT
T ss_pred HHHHHHHHHHHhcCCCCHHHhhhce-eeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCC--CCccc
Confidence 33444455442 4578876655543 2244444433342 2334455566666554433322 223433 45556
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 024733 186 NSMNLLLYMAPIAVVLLLPAT 206 (263)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~ 206 (263)
+.+..=.....++.+....++
T Consensus 344 gv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 344 GINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp CHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHhhHHHHHHHHHHHHHh
Confidence 666666666666665554444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.06 E-value=6.4e+02 Score=14.03 Aligned_cols=22 Identities=5% Similarity=-0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcc
Q 024733 47 MTACSLLSYIAIAWMKMVPMQT 68 (263)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~ 68 (263)
..++.+.+..+.++++++.+++
T Consensus 22 ~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHHHhhhhHhhcc
Done!