Query 024733
Match_columns 263
No_of_seqs 143 out of 1493
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 13:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024733.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024733hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 31.5 1.1E+02 0.0084 24.0 19.5 52 122-175 249-301 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.4 90 0.0065 14.0 2.9 17 155-171 3-19 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.3 5.3E+02 0.038 18.5 5.8 52 78-133 5-56 (248)
4 d1uptb_ a.193.1.1 (B:) Golgi a 3.0 2.7E+02 0.019 15.2 1.3 20 117-136 12-31 (58)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 1.6 6.2E+02 0.045 12.1 2.7 17 154-170 18-34 (37)
6 d2p7tc1 f.14.1.1 (C:86-119) Po 1.4 6.4E+02 0.047 11.5 2.9 13 113-125 21-33 (34)
7 d1pv7a_ f.38.1.2 (A:) Lactose 1.4 1.4E+03 0.1 15.4 13.8 20 125-144 284-303 (417)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 1.3 6.7E+02 0.049 11.2 2.7 14 15-28 14-27 (32)
9 d1kqfb2 f.23.22.1 (B:246-290) 1.1 9.8E+02 0.071 12.0 3.0 24 71-94 8-31 (45)
10 d2c0sa1 a.30.7.1 (A:1-57) Hypo 1.0 1.1E+03 0.081 12.5 2.4 18 29-46 19-36 (57)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=31.51 E-value=1.1e+02 Score=24.02 Aligned_cols=52 Identities=8% Similarity=-0.138 Sum_probs=23.7
Q ss_pred HhhcccChhhHHHHhhhhhhhee-eeccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 024733 122 MTLKREAWLTYVTLIPVVTGVII-ASGGEPSFHLFGFLMCIAATAARALKSVLQG 175 (263)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~Gv~l-~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k 175 (263)
+.++|++......-.+ .|..- ....|.-..+...+.+.++.+..-....+.|
T Consensus 249 ~~~~k~~~~~~~nG~L--aGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~ 301 (383)
T d1u7ga_ 249 ALRGLPSLLGACSGAI--AGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 301 (383)
T ss_dssp HHHSSCCHHHHHHHHH--HHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHhh--hhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHH
Confidence 4566777766554322 23322 2222332233346666665555444333343
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.36 E-value=90 Score=13.99 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024733 155 FGFLMCIAATAARALKS 171 (263)
Q Consensus 155 ~G~~~~l~a~~~~a~~~ 171 (263)
.|.+.+-++.++++.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57888888888888874
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=5.3e+02 Score=18.47 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhhhccccchhHHHHHhhhHHHHHHHHHHHHhhcccChhhHH
Q 024733 78 ISALSFVFCISVVFGNVSLRFLPVSFNQAVGATTPFFTAVFAYLMTLKREAWLTYV 133 (263)
Q Consensus 78 ~~~~~~~~~~~~~~~~~sl~~~~~~~~~vi~~~~pi~~~i~~~~~~~~~~~~~~~~ 133 (263)
++.++++.++..+.....+..-+..++.+ .-+.+.++.++++.+|.-+.|++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehh
Confidence 33445555555554444444444333322 23445555566666655555444
No 4
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.97 E-value=2.7e+02 Score=15.24 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=13.2
Q ss_pred HHHHHHhhcccChhhHHHHh
Q 024733 117 VFAYLMTLKREAWLTYVTLI 136 (263)
Q Consensus 117 i~~~~~~~~~~~~~~~~~~~ 136 (263)
++.|...+|..+..+.++.+
T Consensus 12 LfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 12 LFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHcCcchhHHHHHHHHH
Confidence 45666677777777766654
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.60 E-value=6.2e+02 Score=12.05 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024733 154 LFGFLMCIAATAARALK 170 (263)
Q Consensus 154 ~~G~~~~l~a~~~~a~~ 170 (263)
.||.++.+.-++.++-|
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36777766666665544
No 6
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.40 E-value=6.4e+02 Score=11.46 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhc
Q 024733 113 FFTAVFAYLMTLK 125 (263)
Q Consensus 113 i~~~i~~~~~~~~ 125 (263)
++.++..|+..+|
T Consensus 21 v~aa~atwfvgre 33 (34)
T d2p7tc1 21 VTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc
Confidence 3444444444443
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.39 E-value=1.4e+03 Score=15.44 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=10.4
Q ss_pred cccChhhHHHHhhhhhhhee
Q 024733 125 KREAWLTYVTLIPVVTGVII 144 (263)
Q Consensus 125 ~~~~~~~~~~~~l~~~Gv~l 144 (263)
+|..+++.........++..
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~ 303 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVRI 303 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHhh
Confidence 56666655555444444433
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.28 E-value=6.7e+02 Score=11.16 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 024733 15 AWYSSNIGVLLLNK 28 (263)
Q Consensus 15 ~~~~~s~~~~~~nK 28 (263)
.++...++..+..|
T Consensus 14 lffgiavgiifaik 27 (32)
T d2e74e1 14 LFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeEE
Confidence 33333444444333
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=1.06 E-value=9.8e+02 Score=12.02 Aligned_cols=24 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh
Q 024733 71 SRLQFLKISALSFVFCISVVFGNV 94 (263)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~ 94 (263)
||...|.+...++..+....+..+
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
No 10
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=1.03 E-value=1.1e+03 Score=12.46 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=0.0
Q ss_pred HHhhhCCCCchHHHHHHH
Q 024733 29 YLLSNYGFRYPIFLTMCH 46 (263)
Q Consensus 29 ~~l~~~~f~~p~~l~~~r 46 (263)
++.+.+||..+-++.+-|
T Consensus 19 ~Lv~~YGf~h~kvl~~SQ 36 (57)
T d2c0sa1 19 YLVEKYGFTHHKVISFSQ 36 (57)
T ss_dssp HHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHH
Done!