Query 024734
Match_columns 263
No_of_seqs 129 out of 1287
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.3E-27 5.1E-32 216.0 25.3 251 3-260 9-272 (358)
2 PRK11272 putative DMT superfam 99.9 4.3E-24 9.4E-29 189.9 22.9 226 1-260 1-229 (292)
3 PRK11453 O-acetylserine/cystei 99.9 2.3E-23 5E-28 185.8 22.4 220 8-260 5-231 (299)
4 TIGR00950 2A78 Carboxylate/Ami 99.9 8.3E-23 1.8E-27 177.9 20.0 207 19-261 1-209 (260)
5 PRK11689 aromatic amino acid e 99.9 6.6E-23 1.4E-27 182.6 19.8 226 5-261 2-232 (295)
6 TIGR00688 rarD rarD protein. T 99.9 1.3E-22 2.9E-27 176.9 19.8 218 7-261 2-225 (256)
7 PRK10532 threonine and homoser 99.9 2.6E-21 5.7E-26 172.1 21.2 219 2-260 7-225 (293)
8 PRK15430 putative chlorampheni 99.9 2.3E-21 5E-26 172.8 20.6 221 4-261 5-230 (296)
9 TIGR00817 tpt Tpt phosphate/ph 99.8 1.1E-18 2.4E-23 155.8 24.0 180 23-230 18-199 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.8 4.9E-18 1.1E-22 150.2 18.5 219 9-260 3-227 (281)
11 PTZ00343 triose or hexose phos 99.8 2.9E-17 6.4E-22 149.7 22.8 197 6-230 48-253 (350)
12 COG0697 RhaT Permeases of the 99.8 2.3E-16 5E-21 138.3 21.4 229 1-261 1-232 (292)
13 PF06027 DUF914: Eukaryotic pr 99.7 1.4E-15 3E-20 136.8 21.2 195 19-231 25-221 (334)
14 PF00892 EamA: EamA-like trans 99.6 9.4E-16 2E-20 118.1 10.0 124 17-148 1-125 (126)
15 COG2510 Predicted membrane pro 99.6 3.9E-15 8.4E-20 113.7 10.8 134 8-148 4-138 (140)
16 COG2962 RarD Predicted permeas 99.6 3.4E-13 7.4E-18 116.9 20.7 218 1-253 1-221 (293)
17 TIGR00776 RhaT RhaT L-rhamnose 99.6 2.3E-13 5E-18 121.0 17.6 181 8-215 2-187 (290)
18 COG5006 rhtA Threonine/homoser 99.5 7E-12 1.5E-16 106.5 19.5 214 8-260 13-226 (292)
19 TIGR00950 2A78 Carboxylate/Ami 99.5 1.6E-12 3.6E-17 113.0 15.7 132 4-144 125-259 (260)
20 KOG2765 Predicted membrane pro 99.4 5.7E-12 1.2E-16 112.4 12.7 164 75-256 163-330 (416)
21 KOG4510 Permease of the drug/m 99.4 1.3E-13 2.8E-18 117.8 1.5 205 6-229 37-242 (346)
22 PRK10532 threonine and homoser 99.3 8.3E-11 1.8E-15 104.7 17.1 136 5-150 146-282 (293)
23 PRK11272 putative DMT superfam 99.3 1E-10 2.3E-15 104.0 16.1 137 5-149 148-285 (292)
24 PF13536 EmrE: Multidrug resis 99.3 9.4E-12 2E-16 95.4 7.8 102 41-149 2-106 (113)
25 PF08449 UAA: UAA transporter 99.2 7.5E-09 1.6E-13 92.6 22.6 196 11-227 7-205 (303)
26 PRK11689 aromatic amino acid e 99.2 5.8E-10 1.3E-14 99.4 15.1 132 6-148 155-286 (295)
27 PLN00411 nodulin MtN21 family 99.1 2.3E-09 5.1E-14 98.0 16.5 135 7-149 189-328 (358)
28 PRK11453 O-acetylserine/cystei 99.1 4.1E-09 8.9E-14 94.1 16.4 137 6-148 142-286 (299)
29 TIGR03340 phn_DUF6 phosphonate 99.1 1.1E-09 2.3E-14 96.9 11.8 134 5-146 142-280 (281)
30 TIGR00817 tpt Tpt phosphate/ph 99.0 2.4E-09 5.1E-14 95.6 11.1 139 5-149 143-293 (302)
31 PF04142 Nuc_sug_transp: Nucle 98.9 1.4E-07 3E-12 81.9 15.9 153 67-228 13-166 (244)
32 PRK15430 putative chlorampheni 98.8 9.8E-08 2.1E-12 85.1 14.5 133 10-149 152-285 (296)
33 PTZ00343 triose or hexose phos 98.8 1.7E-07 3.7E-12 85.6 15.4 138 5-148 192-347 (350)
34 PF03151 TPT: Triose-phosphate 98.8 2.2E-07 4.8E-12 74.3 14.3 133 8-146 1-150 (153)
35 COG0697 RhaT Permeases of the 98.8 2.6E-07 5.7E-12 80.7 16.0 132 6-148 153-286 (292)
36 TIGR00776 RhaT RhaT L-rhamnose 98.8 1E-07 2.2E-12 84.9 13.0 129 6-148 151-287 (290)
37 KOG1441 Glucose-6-phosphate/ph 98.6 6.2E-07 1.4E-11 80.2 11.6 180 26-231 36-221 (316)
38 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.5E-07 9.7E-12 69.3 8.6 68 75-148 40-108 (111)
39 COG5006 rhtA Threonine/homoser 98.5 1.5E-06 3.3E-11 74.3 12.3 132 5-145 146-278 (292)
40 PRK02971 4-amino-4-deoxy-L-ara 98.4 4.8E-06 1E-10 65.3 12.0 117 7-148 2-121 (129)
41 KOG2234 Predicted UDP-galactos 98.4 0.00022 4.7E-09 64.1 23.9 208 7-229 15-236 (345)
42 KOG3912 Predicted integral mem 98.4 2.7E-05 5.9E-10 67.7 15.5 189 20-225 16-225 (372)
43 KOG2766 Predicted membrane pro 98.4 3.9E-08 8.5E-13 84.0 -1.9 171 35-230 47-217 (336)
44 PF06027 DUF914: Eukaryotic pr 98.3 1.5E-05 3.3E-10 72.1 14.5 139 4-149 165-305 (334)
45 KOG1444 Nucleotide-sugar trans 98.3 8.7E-05 1.9E-09 65.8 17.6 195 9-230 14-211 (314)
46 KOG4314 Predicted carbohydrate 98.3 3.1E-06 6.7E-11 70.0 8.0 99 81-203 63-161 (290)
47 PRK13499 rhamnose-proton sympo 98.2 0.00018 3.9E-09 65.3 17.2 181 1-193 1-190 (345)
48 PF06800 Sugar_transport: Suga 98.2 0.00027 5.8E-09 61.9 17.5 142 68-226 42-184 (269)
49 KOG1443 Predicted integral mem 98.1 7.4E-05 1.6E-09 65.8 12.3 187 18-231 28-222 (349)
50 PF08449 UAA: UAA transporter 97.9 0.00028 6E-09 63.1 13.6 135 8-148 155-296 (303)
51 PF06800 Sugar_transport: Suga 97.8 0.00044 9.5E-09 60.6 11.9 115 4-126 135-250 (269)
52 KOG1442 GDP-fucose transporter 97.7 0.00022 4.7E-09 62.1 8.9 201 36-259 61-271 (347)
53 TIGR00688 rarD rarD protein. T 97.7 0.0012 2.6E-08 57.4 13.3 105 11-118 150-255 (256)
54 COG2962 RarD Predicted permeas 97.5 0.0038 8.2E-08 54.9 14.2 126 14-148 155-282 (293)
55 PF04657 DUF606: Protein of un 97.5 0.0026 5.6E-08 50.4 11.4 129 10-146 4-138 (138)
56 PF10639 UPF0546: Uncharacteri 97.4 0.00033 7.1E-09 53.4 5.8 109 13-147 2-112 (113)
57 PF05653 Mg_trans_NIPA: Magnes 97.3 0.0017 3.6E-08 58.2 9.8 121 1-149 1-122 (300)
58 KOG1580 UDP-galactose transpor 97.2 0.005 1.1E-07 52.7 10.2 130 82-230 96-226 (337)
59 KOG1581 UDP-galactose transpor 97.1 0.035 7.5E-07 49.2 15.7 173 35-227 50-223 (327)
60 PRK09541 emrE multidrug efflux 97.1 0.0026 5.7E-08 48.4 7.4 65 78-148 36-102 (110)
61 PRK10452 multidrug efflux syst 97.1 0.0024 5.2E-08 49.3 7.0 66 78-149 36-103 (120)
62 KOG1441 Glucose-6-phosphate/ph 97.0 0.0023 5.1E-08 57.5 7.4 138 4-148 160-306 (316)
63 PRK10650 multidrug efflux syst 96.9 0.023 5E-07 43.1 10.9 60 82-147 46-106 (109)
64 COG2076 EmrE Membrane transpor 96.9 0.0042 9.2E-08 46.7 6.7 61 82-148 41-102 (106)
65 PRK13499 rhamnose-proton sympo 96.9 0.066 1.4E-06 48.8 15.7 145 4-149 171-341 (345)
66 PRK11431 multidrug efflux syst 96.8 0.0072 1.6E-07 45.6 7.7 64 79-148 36-101 (105)
67 KOG4510 Permease of the drug/m 96.8 0.00088 1.9E-08 58.2 3.0 135 7-149 191-325 (346)
68 KOG2765 Predicted membrane pro 96.7 0.02 4.4E-07 52.0 10.6 139 6-150 246-391 (416)
69 COG4975 GlcU Putative glucose 96.7 0.00047 1E-08 59.1 0.1 183 8-214 3-186 (288)
70 PF00893 Multi_Drug_Res: Small 96.5 0.0086 1.9E-07 44.1 5.7 52 82-139 40-92 (93)
71 TIGR00803 nst UDP-galactose tr 96.1 0.029 6.2E-07 47.7 7.9 61 79-145 160-220 (222)
72 PF00892 EamA: EamA-like trans 96.0 0.0079 1.7E-07 45.4 3.6 70 187-260 1-70 (126)
73 COG3238 Uncharacterized protei 95.8 0.22 4.7E-06 39.9 11.2 136 6-147 4-144 (150)
74 KOG1580 UDP-galactose transpor 95.7 0.027 5.8E-07 48.3 6.0 106 36-147 202-311 (337)
75 KOG2922 Uncharacterized conser 95.7 0.0012 2.6E-08 58.7 -2.2 121 1-149 15-136 (335)
76 KOG1581 UDP-galactose transpor 95.7 0.19 4E-06 44.7 11.2 112 31-148 197-312 (327)
77 PF06379 RhaT: L-rhamnose-prot 95.1 0.95 2.1E-05 41.0 13.9 183 1-196 1-192 (344)
78 COG5070 VRG4 Nucleotide-sugar 94.7 0.43 9.4E-06 40.8 10.1 150 89-258 86-239 (309)
79 PF07857 DUF1632: CEO family ( 94.1 1.2 2.7E-05 38.9 12.1 186 8-203 1-209 (254)
80 PF03151 TPT: Triose-phosphate 93.6 0.36 7.8E-06 38.0 7.3 54 178-231 1-60 (153)
81 KOG3912 Predicted integral mem 93.4 1.3 2.9E-05 39.2 10.8 139 3-147 172-332 (372)
82 KOG1444 Nucleotide-sugar trans 93.2 1.2 2.5E-05 40.0 10.4 137 6-148 156-299 (314)
83 KOG1443 Predicted integral mem 93.1 2.1 4.6E-05 38.3 11.7 137 5-147 162-313 (349)
84 PF04142 Nuc_sug_transp: Nucle 93.0 2.5 5.3E-05 36.7 12.1 128 5-138 112-242 (244)
85 COG4975 GlcU Putative glucose 90.2 0.24 5.3E-06 42.8 2.8 77 67-146 206-282 (288)
86 KOG4831 Unnamed protein [Funct 88.7 8.5 0.00019 28.9 10.0 113 8-147 4-123 (125)
87 KOG1583 UDP-N-acetylglucosamin 88.2 3.2 7E-05 36.7 8.2 171 37-221 34-209 (330)
88 COG2510 Predicted membrane pro 88.1 2.1 4.5E-05 33.4 6.3 76 179-257 5-80 (140)
89 KOG1582 UDP-galactose transpor 88.0 4.5 9.8E-05 35.7 8.9 110 34-149 218-332 (367)
90 TIGR00803 nst UDP-galactose tr 85.2 9.7 0.00021 32.0 9.6 96 99-203 6-111 (222)
91 KOG1442 GDP-fucose transporter 84.0 2 4.2E-05 38.0 4.7 142 5-152 183-330 (347)
92 KOG1582 UDP-galactose transpor 83.7 1.7 3.8E-05 38.2 4.3 176 32-235 69-249 (367)
93 COG5070 VRG4 Nucleotide-sugar 82.7 7.1 0.00015 33.6 7.5 107 34-146 183-293 (309)
94 PF04657 DUF606: Protein of un 69.5 43 0.00093 26.3 8.3 52 179-230 3-54 (138)
95 PRK02237 hypothetical protein; 68.6 6.7 0.00014 29.6 3.3 38 106-149 68-105 (109)
96 PF04342 DUF486: Protein of un 68.6 31 0.00068 25.9 6.7 51 90-146 54-105 (108)
97 KOG2234 Predicted UDP-galactos 67.0 1E+02 0.0022 28.2 13.1 135 3-147 179-320 (345)
98 PF02694 UPF0060: Uncharacteri 65.4 6.3 0.00014 29.6 2.6 38 106-149 66-103 (107)
99 COG4657 RnfA Predicted NADH:ub 57.2 84 0.0018 25.6 7.8 52 173-224 128-184 (193)
100 KOG1583 UDP-N-acetylglucosamin 55.9 15 0.00032 32.7 3.6 48 95-148 266-313 (330)
101 PF07168 Ureide_permease: Urei 54.1 9.9 0.00022 34.1 2.3 130 12-146 1-143 (336)
102 COG3086 RseC Positive regulato 49.2 24 0.00053 28.0 3.5 35 91-126 68-102 (150)
103 PF05653 Mg_trans_NIPA: Magnes 46.8 39 0.00084 30.2 5.0 67 82-148 223-291 (300)
104 KOG2766 Predicted membrane pro 46.7 30 0.00064 30.5 4.0 131 6-147 165-297 (336)
105 PRK10862 SoxR reducing system 43.1 28 0.0006 28.0 3.1 29 91-119 68-96 (154)
106 COG1742 Uncharacterized conser 42.3 17 0.00036 27.2 1.6 37 107-149 68-104 (109)
107 PF07698 7TM-7TMR_HD: 7TM rece 39.7 2.1E+02 0.0045 23.3 15.0 35 195-230 120-154 (194)
108 COG3238 Uncharacterized protei 38.4 2.1E+02 0.0045 23.0 8.3 55 177-231 5-59 (150)
109 PF09656 PGPGW: Putative trans 37.3 1.2E+02 0.0026 19.8 5.5 46 133-203 5-50 (53)
110 PF07857 DUF1632: CEO family ( 31.9 1.5E+02 0.0032 26.0 6.1 58 3-60 179-247 (254)
111 CHL00196 psbY photosystem II p 31.4 1.1E+02 0.0025 18.2 3.6 19 178-196 7-25 (36)
112 PF05297 Herpes_LMP1: Herpesvi 27.2 21 0.00045 31.8 0.0 42 82-123 33-76 (381)
113 PF04246 RseC_MucC: Positive r 27.2 64 0.0014 24.9 2.8 27 93-119 63-89 (135)
114 PF06298 PsbY: Photosystem II 27.0 1.5E+02 0.0032 17.8 3.6 20 178-197 7-26 (36)
115 COG3169 Uncharacterized protei 25.9 2.8E+02 0.0061 20.6 8.1 30 112-147 84-113 (116)
116 PF10754 DUF2569: Protein of u 23.2 3.7E+02 0.0081 21.1 7.1 28 174-201 118-145 (149)
117 PF06570 DUF1129: Protein of u 21.5 2.9E+02 0.0063 23.0 5.9 58 2-60 143-200 (206)
118 TIGR02865 spore_II_E stage II 20.9 6.9E+02 0.015 25.6 9.4 42 98-145 11-52 (764)
119 PRK13240 pbsY photosystem II p 20.3 2.2E+02 0.0048 17.4 3.5 19 178-196 7-25 (40)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=2.3e-27 Score=215.99 Aligned_cols=251 Identities=36% Similarity=0.624 Sum_probs=194.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHH
Q 024734 3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRS-QIPPLTLPILSAFFLLGFLG 81 (263)
Q Consensus 3 ~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 81 (263)
.++.+.++.+++..+.+++..++.|.+++.|++|..+.++|+.+|+++++++.+.++|+ ++++.++|++..+.+.|+++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999988765542 23445678888888888888
Q ss_pred HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHH------hhhcccccccCccchhhHHHHHHHHHHHhhhccCCcc
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIF------RVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHL 155 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 155 (263)
..++.+++.|++|+++++++++.+++|+++.++++++ ++||++++ +++|++++++|+.++...+++..
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence 6677899999999999999999999999999999999 59999999 99999999999998875444311
Q ss_pred cccCCCCCCC---c--ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 156 LMTSLPPNSS---L--QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 156 ~~~~~~~~~~---~--~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
...++.++.+ . ++.....+...|+++.+.|+++|+.|++++|+..+++|+....++|++.++++...+.....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000000000 0 0011223456799999999999999999999999998745677888888888888777776654
Q ss_pred C-CCcccccCCchhhHHhhHhhhhccccccc
Q 024734 231 D-LSSWSLKPGVRLVAVLYSVSRSKKKKNVC 260 (263)
Q Consensus 231 ~-~~~~~~~~~~~~~~l~y~gv~~t~~~~~~ 260 (263)
+ ...|........+.++|.+++ +.++|++
T Consensus 243 ~~~~~~~~~~~~~~~~i~y~~i~-t~lay~l 272 (358)
T PLN00411 243 NNPSVWIIHFDITLITIVTMAII-TSVYYVI 272 (358)
T ss_pred CCcccceeccchHHHHHHHHHHH-HHHHHHH
Confidence 2 233332233345568898876 5578754
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=4.3e-24 Score=189.92 Aligned_cols=226 Identities=13% Similarity=0.052 Sum_probs=178.2
Q ss_pred CCCcchHH-HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 024734 1 MGKVGLAP-VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGF 79 (263)
Q Consensus 1 ~~~~~~~~-~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (263)
|+.+...+ .+.++...++||++++++|.+.++ +||.+++++|+.+++++++++...++++ ..++|++.+....|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~ 76 (292)
T PRK11272 1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGL 76 (292)
T ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHH
Confidence 44444444 346778899999999999998775 9999999999999999988876543222 224677777788888
Q ss_pred HH-HHHHHHHHHhh-hhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccc
Q 024734 80 LG-TSSQFFGYAGI-YYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM 157 (263)
Q Consensus 80 ~~-~~~~~~~~~al-~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~ 157 (263)
++ ..++.+++++. +++++++++++.++.|+++.+++++ +|||++++ +++|++++++|+.++... +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~---- 144 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN---- 144 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc----
Confidence 87 77888999999 9999999999999999999999986 69999999 999999999999886521 10
Q ss_pred cCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccc
Q 024734 158 TSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSL 237 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 237 (263)
. ++...|+++.++++++||.+++..||..++. +...+.+++.++++...+.....+.+... .
T Consensus 145 -------------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 206 (292)
T PRK11272 145 -------------L-SGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--L 206 (292)
T ss_pred -------------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--c
Confidence 1 1234699999999999999999999976443 46677899999988888877655433211 1
Q ss_pred cCCchhhHHhhHhhhhccccccc
Q 024734 238 KPGVRLVAVLYSVSRSKKKKNVC 260 (263)
Q Consensus 238 ~~~~~~~~l~y~gv~~t~~~~~~ 260 (263)
.+...|..++|+++++|.++|.+
T Consensus 207 ~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 207 PTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 12245888999999999988864
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=2.3e-23 Score=185.83 Aligned_cols=220 Identities=12% Similarity=0.088 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQF 86 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 86 (263)
..+..++++++||++++++|.+.++ +||.++.++|+.++++.++++. +++ +.+++ .....|++. ...+.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP----KVPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC----CCchH---HHHHHHHHHHHHHHH
Confidence 3466889999999999999998876 9999999999999887766543 111 12232 234446655 56666
Q ss_pred HHHHhhhh-cCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCC
Q 024734 87 FGYAGIYY-SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSS 165 (263)
Q Consensus 87 ~~~~al~~-~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 165 (263)
+++.++++ .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. ++.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~------------ 135 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL------------ 135 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC------------
Confidence 78889998 58899999999999999999999999999999 99999999999988762 111
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHHHHHHccCC---CcccccCC
Q 024734 166 LQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSA--EFIVVFFYCFFVAIQSAILCLVMERDL---SSWSLKPG 240 (263)
Q Consensus 166 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~ 240 (263)
+..+....|+++++.++++|+.+++.+||..++.++ ......++...+.+.........|++. .++...+.
T Consensus 136 ----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (299)
T PRK11453 136 ----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM 211 (299)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence 111223469999999999999999999998765532 234456666666655555554444321 11112222
Q ss_pred chhhHHhhHhhhhccccccc
Q 024734 241 VRLVAVLYSVSRSKKKKNVC 260 (263)
Q Consensus 241 ~~~~~l~y~gv~~t~~~~~~ 260 (263)
..+..++|+|+++|+++|.+
T Consensus 212 ~~~~~l~~l~i~~t~~~~~l 231 (299)
T PRK11453 212 TTILSLMYLAFVATIVGYGI 231 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999876
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=8.3e-23 Score=177.91 Aligned_cols=207 Identities=16% Similarity=0.067 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCc
Q 024734 19 HVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSP 97 (263)
Q Consensus 19 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~ 97 (263)
||.+++..|...+++.||.+..+.|+..+.+.+.+.... + .+++++......|.++ .+++.++++|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998888776432 2 1344556677788888 8999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHH
Q 024734 98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVF 177 (263)
Q Consensus 98 ~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (263)
++++++.+++|+++.+++++++|||++++ +++|+.++++|+.++.. ++ ..++...
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~~~ 128 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSINPA 128 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------cccccHH
Confidence 99999999999999999999999999999 99999999999988752 11 1123357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHhhHhhhhccc
Q 024734 178 GGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKK 256 (263)
Q Consensus 178 G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~gv~~t~~ 256 (263)
|+.+.+.++++|+.+++..||..++.+ ++.....+++.++.+...+.....+++. .. ....+..+++++++++.+
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTAL 204 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887764 1345555788889888888877654332 11 223577889999999999
Q ss_pred ccccc
Q 024734 257 KNVCV 261 (263)
Q Consensus 257 ~~~~~ 261 (263)
+|.+.
T Consensus 205 ~~~~~ 209 (260)
T TIGR00950 205 AYFLW 209 (260)
T ss_pred HHHHH
Confidence 98764
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.91 E-value=6.6e-23 Score=182.61 Aligned_cols=226 Identities=11% Similarity=0.077 Sum_probs=158.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (263)
|.++++.++.++++||++++..|.+.++ +||..+.++|+.++.++++++. ++++.++.++ +....+.++ ..
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~~----~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFPK----RYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cccccccccH----HHHHHHhHHHHH
Confidence 5678889999999999999999998876 9999999999999999888753 1211112222 233444555 77
Q ss_pred HHHHHHHhhhh----cCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccC
Q 024734 84 SQFFGYAGIYY----SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS 159 (263)
Q Consensus 84 ~~~~~~~al~~----~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 159 (263)
++.+++.++++ +++++++++.++.|+++.+++++++|||++++ +++|++++++|++++... ++.....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~~- 145 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSLA- 145 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchhh-
Confidence 77778877765 57888899999999999999999999999999 999999999999887632 1100000
Q ss_pred CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccC
Q 024734 160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 239 (263)
+ ..++..+...|+++.++|+++||.|++..||..++.+ +.... + ..+++...+.....+++..+ . +
T Consensus 146 -----~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~--~-~~~~~~l~~~~~~~~~~~~~--~-~ 211 (295)
T PRK11689 146 -----E--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF--F-ILTALALWIKYFLSPQPAMV--F-S 211 (295)
T ss_pred -----h--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH--H-HHHHHHHHHHHHHhcCcccc--C-C
Confidence 0 0001112246999999999999999999999987765 55432 2 23333333333333322111 1 1
Q ss_pred CchhhHHhhHhhhhcccccccc
Q 024734 240 GVRLVAVLYSVSRSKKKKNVCV 261 (263)
Q Consensus 240 ~~~~~~l~y~gv~~t~~~~~~~ 261 (263)
...+..++|.+ ++++++|.+.
T Consensus 212 ~~~~~~l~~~~-~~t~~~~~l~ 232 (295)
T PRK11689 212 LPAIIKLLLAA-AAMGFGYAAW 232 (295)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 23577788888 5788888653
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.91 E-value=1.3e-22 Score=176.92 Aligned_cols=218 Identities=9% Similarity=-0.011 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHH-HHHHHHHHHH
Q 024734 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPI-LSAFFLLGFL 80 (263)
Q Consensus 7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~ 80 (263)
|+++.+++++++||.+++++|. .++ +||.+++++|++++.+++.++...+++++ .++.++++ +......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 6889999999999999999998 454 99999999999999988877664433211 11112222 3345556666
Q ss_pred HHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCC
Q 024734 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL 160 (263)
Q Consensus 81 ~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~ 160 (263)
...++.+++++++++++++++++.++.|+++++++++++|||++++ +++|+.++++|++++... +
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~-~-------- 144 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL-K-------- 144 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH-c--------
Confidence 6888999999999999999999999999999999999999999999 999999999999887521 1
Q ss_pred CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCC
Q 024734 161 PPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPG 240 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 240 (263)
++.. .+.++++++|+.|.+..||..++. .......+ ........+... .++........+.
T Consensus 145 -----------~~~~----~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 205 (256)
T TIGR00688 145 -----------GSLP----WEALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNPF 205 (256)
T ss_pred -----------CCch----HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHH-HhccCcccccCch
Confidence 1111 357889999999999999876432 22222211 122112211111 1111111111121
Q ss_pred chhhHHhhHhhhhcccccccc
Q 024734 241 VRLVAVLYSVSRSKKKKNVCV 261 (263)
Q Consensus 241 ~~~~~l~y~gv~~t~~~~~~~ 261 (263)
..|..++++|++ |.++|.+.
T Consensus 206 ~~~~~l~~~g~~-t~i~~~l~ 225 (256)
T TIGR00688 206 PIWLLLVLAGLI-TGTPLLAF 225 (256)
T ss_pred hHHHHHHHHHHH-HHHHHHHH
Confidence 257778888876 88888763
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=2.6e-21 Score=172.14 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=167.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 024734 2 GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG 81 (263)
Q Consensus 2 ~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (263)
|..+.+++..+++++++|+.++.++|.+.++ .||.+++++|++++.++++++... +++ +.++|++...+..|.+.
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~~~ 81 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGVSL 81 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999887 999999999999999988876432 111 23567777777788777
Q ss_pred HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCC
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP 161 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 161 (263)
...+.+++++++|+|++.++++.++.|+++.+++ +||+. +..++.++++|+.++.. .+.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~-------- 140 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQ-------- 140 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCC--------
Confidence 6778889999999999999999999999999887 35543 34566788999987652 121
Q ss_pred CCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCc
Q 024734 162 PNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGV 241 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 241 (263)
+.+.....|+++.++++++|+.|++..||..++.+ +... .++..++++...++....+.+. .++ ..
T Consensus 141 --------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~---~~ 206 (293)
T PRK10532 141 --------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGEA-LWH---WS 206 (293)
T ss_pred --------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCcc-cCC---HH
Confidence 11122346999999999999999999999987775 6655 5677778877777766543211 111 12
Q ss_pred hhhHHhhHhhhhccccccc
Q 024734 242 RLVAVLYSVSRSKKKKNVC 260 (263)
Q Consensus 242 ~~~~l~y~gv~~t~~~~~~ 260 (263)
.+..++|+|+++|.++|.+
T Consensus 207 ~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 207 ILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999865
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.89 E-value=2.3e-21 Score=172.77 Aligned_cols=221 Identities=10% Similarity=0.002 Sum_probs=155.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC--C-CCCHHHHHHHHHHHHH
Q 024734 4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI--P-PLTLPILSAFFLLGFL 80 (263)
Q Consensus 4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~ 80 (263)
++.|+++.+++++++||.++++.|.. ++ +||.++.++|+.++.+++.++...+++++. + ..+++++. ....+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHH
Confidence 55689999999999999999999975 44 999999999999999888776654322111 0 11344443 3335666
Q ss_pred H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccC
Q 024734 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS 159 (263)
Q Consensus 81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 159 (263)
+ ..++.++++|++++|+++++++.++.|+++.+++++++|||++++ +++|++++++|++++....+
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------- 148 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------- 148 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence 6 889999999999999999999999999999999999999999999 99999999999998762111
Q ss_pred CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHccCCCccccc
Q 024734 160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLK 238 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 238 (263)
+ . ..+.++++++|+.|++..||..++.. +....+.|+...+.+...+.. +.+...+. .
T Consensus 149 ------------~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~ 207 (296)
T PRK15430 149 ------------S-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMG-Q 207 (296)
T ss_pred ------------C-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCccccc-C
Confidence 1 1 14678899999999999988754321 124444555555544432221 11111111 1
Q ss_pred CCchhhHHhhHhhhhcccccccc
Q 024734 239 PGVRLVAVLYSVSRSKKKKNVCV 261 (263)
Q Consensus 239 ~~~~~~~l~y~gv~~t~~~~~~~ 261 (263)
....+..+++.+.+.+.++|.|.
T Consensus 208 ~~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 208 NPMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 11223344444334677887764
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.84 E-value=1.1e-18 Score=155.81 Aligned_cols=180 Identities=9% Similarity=0.041 Sum_probs=150.6
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhh
Q 024734 23 MFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA 102 (263)
Q Consensus 23 ~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asi 102 (263)
.+..|.++++-.+|..+.++|+.++.+.+.+.. ..+.+++++.++|+++.....|+++..++.+.+.+++|++++.+++
T Consensus 18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 356788887547799999999999988766652 1222233456788999999999999888899999999999999999
Q ss_pred hccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHH
Q 024734 103 LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLL 182 (263)
Q Consensus 103 l~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 182 (263)
+.++.|+++.++++++++||++++ ++.|++++++|+.+.. .+ +. +....|++++
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~-----------------~~-~~~~~G~~~~ 150 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DT-----------------EL-SFNWAGFLSA 150 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CC-----------------cc-cccHHHHHHH
Confidence 999999999999999999999999 9999999999997643 11 11 1234699999
Q ss_pred HHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 183 AVDCVFTSAWFIVQASILK--KFSAEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 183 l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
++|+++|+.+++..||..+ +.+ +.+.+.|+...+.+..+|+....|+
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999888 665 8999999999999999999887664
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.80 E-value=4.9e-18 Score=150.20 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 024734 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFH-RSQIPPLTLPILSAFFLLGFLG-TSSQF 86 (263)
Q Consensus 9 ~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 86 (263)
....+.++++|+...+..|...++ -++. .+++...+.+.+.|+...+. ++.++..+++.+ .....+.++ ..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFW-LLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhH-HHHHHHHHHHHHHHH
Confidence 456788999999999999965554 4443 47777778888887765432 222222333333 344444444 89999
Q ss_pred HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCc
Q 024734 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL 166 (263)
Q Consensus 87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 166 (263)
+++.+++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|+.++.. ++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence 9999999999999999999999999999999999999999 99999999999988762 111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh----HHHHHHHHHHHHHHHHHHHHHccCCCcccccCCch
Q 024734 167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEF----IVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVR 242 (263)
Q Consensus 167 ~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 242 (263)
... ...|+.+.++++++|+.|++..|+..++.+ +. ..+.++...++....+.....++. .+.. ....
T Consensus 139 ----~~~-~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~ 209 (281)
T TIGR03340 139 ----AQH-RRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMFP-YARQ 209 (281)
T ss_pred ----ccc-chhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chhh-hHHH
Confidence 111 124788999999999999999988755543 22 222333333322222222222221 1111 1234
Q ss_pred hhHHhhHhhhhccccccc
Q 024734 243 LVAVLYSVSRSKKKKNVC 260 (263)
Q Consensus 243 ~~~l~y~gv~~t~~~~~~ 260 (263)
++.++|.+.+.++++|.+
T Consensus 210 ~~~~~~~~~~~s~l~~~l 227 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYAL 227 (281)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667889999999988864
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.79 E-value=2.9e-17 Score=149.68 Aligned_cols=197 Identities=14% Similarity=0.080 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLGT 82 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~ 82 (263)
.+.....+.=..+-.......|.++++ .| |+.+..+|++++.++...+... +.+++++. .++++..++..|+++.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 333333333333334445667888877 99 9999999999998766554322 22222333 2457778888999984
Q ss_pred HHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCC
Q 024734 83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP 162 (263)
Q Consensus 83 ~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 162 (263)
..+...+.++++++++.+.++.+++|++++++++++++||++++ ++.+++++++|+.+... +
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~---------- 187 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K---------- 187 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c----------
Confidence 44555779999999999999999999999999999999999999 99999999999988652 1
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 163 NSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS------AEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
+. +....|++++++|+++|+.+++..||..++.+ ++.....++..++.+..+|+....|.
T Consensus 188 -------~~-~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 188 -------EL-HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred -------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 12356999999999999999999999887532 25556667789999999999876654
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.75 E-value=2.3e-16 Score=138.31 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=162.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL 80 (263)
Q Consensus 1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (263)
++++........+...+.|+.+....|...++..++....+.|...+.+...+.....+ ....+..+ +++.....+.+
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 78 (292)
T COG0697 1 MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEP-RGLRPALR-PWLLLLLLALL 78 (292)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc-cccccccc-chHHHHHHHHH
Confidence 34566678888888899999999999998765477777777899999888444432211 11111111 12345555666
Q ss_pred H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHH-HHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCccccc
Q 024734 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAI-IFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT 158 (263)
Q Consensus 81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 158 (263)
+ ..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|..+++.|+.++...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~----- 147 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG----- 147 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc-----
Confidence 6 89999999999999999999999999999999997 7779999999 999999999999987632111
Q ss_pred CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHccCCCcccc
Q 024734 159 SLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVF-FYCFFVAIQSAILCLVMERDLSSWSL 237 (263)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 237 (263)
.... ...|+++.++++++|+.+++..|+.. +.+ +..... ++.. ...........+... ..
T Consensus 148 -----------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~ 208 (292)
T COG0697 148 -----------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSGFG---AP 208 (292)
T ss_pred -----------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcccc---cc
Confidence 0111 46799999999999999999999988 554 555555 4444 222222222222111 11
Q ss_pred cCCchhhHHhhHhhhhcccccccc
Q 024734 238 KPGVRLVAVLYSVSRSKKKKNVCV 261 (263)
Q Consensus 238 ~~~~~~~~l~y~gv~~t~~~~~~~ 261 (263)
.....+..+.+.|++++++++.+.
T Consensus 209 ~~~~~~~~~~~~g~~~~~i~~~~~ 232 (292)
T COG0697 209 ILSRAWLLLLYLGVFSTGLAYLLW 232 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122457788899999998777653
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.72 E-value=1.4e-15 Score=136.79 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024734 19 HVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRS-QIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSS 96 (263)
Q Consensus 19 wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 96 (263)
-.++..+.....+++.+ |..-.++-...-.++..+....++++ +..+..+++|++.++++++...++.+...|++||+
T Consensus 25 ~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs 104 (334)
T PF06027_consen 25 ITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTS 104 (334)
T ss_pred HHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444444443433 44444444444344444443333322 22222345566778889988999999999999999
Q ss_pred chhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHH
Q 024734 97 PTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWV 176 (263)
Q Consensus 97 ~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (263)
.+.+.++..+.-+++++++++++|||.++. |++|++++++|++++...+..... +...+++..
T Consensus 105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~-----------~~~~~~~~i 167 (334)
T PF06027_consen 105 VTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS-----------DSSSGSNPI 167 (334)
T ss_pred HhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc-----------cCCCCCccc
Confidence 999999999999999999999999999999 999999999999987753321100 112456678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734 177 FGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERD 231 (263)
Q Consensus 177 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 231 (263)
.||+++++|+..||.++++.++..++.| ......+..++|.+...+....+|.+
T Consensus 168 ~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~ 221 (334)
T PF06027_consen 168 LGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS 221 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 9999999999999999999999999987 88999999999999998888777764
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.65 E-value=9.4e-16 Score=118.07 Aligned_cols=124 Identities=24% Similarity=0.408 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhhc
Q 024734 17 CAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYS 95 (263)
Q Consensus 17 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~ 95 (263)
++||...++.|...++ .||....++|+..+.+ +++.....++++..+.+++++......+.++ ..++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4699999999998877 9999999999999998 6666665555433455667777788888887 99999999999999
Q ss_pred CchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 96 SPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 96 ~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
++++++.+.+++|+++.++++++++|+++++ +++|+++.+.|+.++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999998764
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.63 E-value=3.9e-15 Score=113.74 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIP-PLTLPILSAFFLLGFLGTSSQF 86 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 86 (263)
..++.++++++||...++.|..+++ +||..-.+.|..+...++..+....++.+.+ ..++|.|..+.+.|+.+.+...
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 4578899999999999999999876 9999999999999999998888776654332 3577888888888877799999
Q ss_pred HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
+||.+++.-+++....+-.++|+++.++++++++||++.+ +|+|+.+..+|+++++
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999 9999999999998754
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.59 E-value=3.4e-13 Score=116.89 Aligned_cols=218 Identities=11% Similarity=0.005 Sum_probs=162.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCHHHHHHHHHH
Q 024734 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI---PPLTLPILSAFFLL 77 (263)
Q Consensus 1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (263)
|+++..+|++..+.+.++||..+...|.. ++ .|+.++...|.+.+.+++.......++.+. ...++|.+......
T Consensus 1 ~~~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 1 MAKDSRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALT 78 (293)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHH
Confidence 56667899999999999999999999985 55 999999999999999888877665543222 12345566666666
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccc
Q 024734 78 GFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM 157 (263)
Q Consensus 78 g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~ 157 (263)
+.+.......|.++.++-.+-++|+=.+..|++..+++.+++|||+++. |++++.++.+||...+...+
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g----- 147 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG----- 147 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC-----
Confidence 6666888999999999999999999999999999999999999999999 99999999999988764222
Q ss_pred cCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccc
Q 024734 158 TSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSL 237 (263)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 237 (263)
+-.. ..+.=+++|+.|... ||.. +.+ +.+-.+..++.-.+..+.+.+..+.+.+-...
T Consensus 148 ---------------~lpw----val~la~sf~~Ygl~-RK~~-~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~ 205 (293)
T COG2962 148 ---------------SLPW----VALALALSFGLYGLL-RKKL-KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQ 205 (293)
T ss_pred ---------------CCcH----HHHHHHHHHHHHHHH-HHhc-CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhc
Confidence 1122 233347899999977 4434 343 67777777777777777776666654320111
Q ss_pred cCCchhhHHhhHhhhh
Q 024734 238 KPGVRLVAVLYSVSRS 253 (263)
Q Consensus 238 ~~~~~~~~l~y~gv~~ 253 (263)
.+...++-++..|+++
T Consensus 206 ~~~~~~~LLv~aG~vT 221 (293)
T COG2962 206 NANSLWLLLVLAGLVT 221 (293)
T ss_pred CCchHHHHHHHhhHHH
Confidence 1223355566666654
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.56 E-value=2.3e-13 Score=121.05 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF 87 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (263)
+++..+.++++||++.+..|... +.++.++. |..++.+++..+....+++ + +..++.+..-++.|.....++.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~-~-~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLP-E-FWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCC-c-ccccHHHHHHHHHHHHHHhhhhh
Confidence 46788999999999999999864 58888776 7888888777765554321 1 11244444344455555788899
Q ss_pred HHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccch----hhHHHHHHHHHHHhhhccCCcccccCCCC
Q 024734 88 GYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAK----SVGTIVLITGAFIMTYYKGPHLLMTSLPP 162 (263)
Q Consensus 88 ~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 162 (263)
++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++ + ++|+++.++|+.++...++.+.
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~------- 142 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA------- 142 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc-------
Confidence 999999999999999988 889999999999999999999 8 9999999999988653221100
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 024734 163 NSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCF 215 (263)
Q Consensus 163 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~ 215 (263)
.++...+...|..+.+.|+++|+.|.+..|+. +.+ +.+..+.|..
T Consensus 143 -----~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~ 187 (290)
T TIGR00776 143 -----GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAI 187 (290)
T ss_pred -----ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHH
Confidence 00000223569999999999999999999875 354 7777555554
No 18
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.48 E-value=7e-12 Score=106.49 Aligned_cols=214 Identities=14% Similarity=0.016 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF 87 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (263)
++..++.+++.-=....+.|...+. .+|.-.+.+|..+++++++++. |+.+++.+++++..+...|..-..-|.+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~ 87 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL 87 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence 5777777777777777888988777 9999999999999999998864 2222456777878888888877778889
Q ss_pred HHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcc
Q 024734 88 GYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ 167 (263)
Q Consensus 88 ~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~ 167 (263)
||.++.+.|-+.+..+-++.|+...+++ .+|.. ..+-+.+++.|+.++.-. +
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~--------d~vwvaLAvlGi~lL~p~-~--------------- 139 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLR--------DFVWVALAVLGIWLLLPL-G--------------- 139 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHh----ccchh--------hHHHHHHHHHHHHhheec-c---------------
Confidence 9999999999999999999999887765 33433 444456778899887521 1
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHh
Q 024734 168 VFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVL 247 (263)
Q Consensus 168 ~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (263)
.+..+.+..|..+++.++.+|+.|.+..||..+..+ ..+-+..-+.++++..+|+.....++. +.....+..-+
T Consensus 140 -~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~~----l~~p~ll~laL 213 (292)
T COG5006 140 -QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGPA----LFSPSLLPLAL 213 (292)
T ss_pred -CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcchh----hcChHHHHHHH
Confidence 123344568999999999999999999999997765 788888999999999999988554331 11112233445
Q ss_pred hHhhhhccccccc
Q 024734 248 YSVSRSKKKKNVC 260 (263)
Q Consensus 248 y~gv~~t~~~~~~ 260 (263)
..++.+|.+-|-+
T Consensus 214 gvavlSSalPYsL 226 (292)
T COG5006 214 GVAVLSSALPYSL 226 (292)
T ss_pred HHHHHhcccchHH
Confidence 7789999887754
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.47 E-value=1.6e-12 Score=113.02 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=113.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 024734 4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSN--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG 81 (263)
Q Consensus 4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (263)
.+.++..+.++++++|+......|...++ .+| .....+|+.++.+++.+..+..+++. ..+.+++......+.++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHH
Confidence 45679999999999999999999998654 664 45555789999999988876644322 33566777778888888
Q ss_pred -HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHH
Q 024734 82 -TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGA 144 (263)
Q Consensus 82 -~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv 144 (263)
..++.++++++++.+++.++.+.+++|+++.++++++++|+++.+ +++|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999 999999999886
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.38 E-value=5.7e-12 Score=112.38 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCc
Q 024734 75 FLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPH 154 (263)
Q Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~ 154 (263)
+....+.+.++..+..++++|+++..+++..+.-+||..++.++..||+++. |.+++.+.+.|+++++..+..+
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc
Confidence 4445555889999999999999999999999999999999999999999999 9999999999999987543211
Q ss_pred ccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---hHHHHHHHHHHHHHHHHHHHHHcc-
Q 024734 155 LLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAE---FIVVFFYCFFVAIQSAILCLVMER- 230 (263)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~- 230 (263)
. ++........|+++++++|+.||+|+++.||...+++.. ..+..+..++..+.+.|..++.+.
T Consensus 237 ~------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~ 304 (416)
T KOG2765|consen 237 N------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF 304 (416)
T ss_pred c------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 0 112344567899999999999999999999988776312 223333444444444444443321
Q ss_pred CCCcccccCCchhhHHhhHhhhhccc
Q 024734 231 DLSSWSLKPGVRLVAVLYSVSRSKKK 256 (263)
Q Consensus 231 ~~~~~~~~~~~~~~~l~y~gv~~t~~ 256 (263)
..+.++.+.......+++.+.+.|.+
T Consensus 305 ~~e~F~lP~~~q~~~vv~~~ligtvv 330 (416)
T KOG2765|consen 305 GEERFELPSSTQFSLVVFNNLIGTVV 330 (416)
T ss_pred ccCcccCCCCceeEeeeHhhHHHHHH
Confidence 12233444444444555555555543
No 21
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.37 E-value=1.3e-13 Score=117.84 Aligned_cols=205 Identities=15% Similarity=0.230 Sum_probs=144.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI-PPLTLPILSAFFLLGFLGTSS 84 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 84 (263)
.++.....+....-.++.++.|.. + .+|.+..-.|++.-.++-.|...+++.... |...+ +.+++.|+.|+.+
T Consensus 37 ~~gl~l~~vs~ff~~~~vv~t~~~--e-~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 37 NLGLLLLTVSYFFNSCMVVSTKVL--E-NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTG 110 (346)
T ss_pred ccCceehhhHHHHhhHHHhhhhhh--c-cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE---EEEEeehhhhhhH
Confidence 345555555644444555555543 3 789999999977777766665544333221 33333 2467788888777
Q ss_pred HHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 024734 85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNS 164 (263)
Q Consensus 85 ~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 164 (263)
....||+++|.+-++|+++..+.|+++++++|.++|||.++. +.+|..+.+.|+++++ +.+. .+.|+.
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpF--lFG~~t-- 178 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPF--LFGDTT-- 178 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCc--ccCCCc--
Confidence 889999999999999999999999999999999999999999 9999999999999987 2221 122211
Q ss_pred CcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHc
Q 024734 165 SLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVME 229 (263)
Q Consensus 165 ~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 229 (263)
..|+.+.-+....|...++.+++.-|...++.|++.++.. .+..+.|..+++.+..++.....+
T Consensus 179 ~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig 242 (346)
T KOG4510|consen 179 EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG 242 (346)
T ss_pred cccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc
Confidence 0111122122235778888888888888888899988875 566667777788777776665444
No 22
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.33 E-value=8.3e-11 Score=104.71 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (263)
+..|.+..++++++|+...+..|...++ .+|.... +-..++++++.++....+. ....++..+...+.+|+++ .+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAE-HGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999987654 8887775 4456667777776654332 1123455555566889998 89
Q ss_pred HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhc
Q 024734 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY 150 (263)
Q Consensus 84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 150 (263)
++.++++++++.++++++.+.+++|+++.++++++++|+++.. +++|.++.+.|+......
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 999999999999887643
No 23
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.30 E-value=1e-10 Score=103.99 Aligned_cols=137 Identities=18% Similarity=0.018 Sum_probs=114.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (263)
+..+.++.++++++|+......|... + -++.....+++.++++.+.++....+.......+.++|......++++ ..
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999853 3 345666788999998888887665433221123567777888889988 89
Q ss_pred HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
++.+|++++++.++++++.+.+++|++++++++++++|+++.. +++|.++.+.|+.++..
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999988753
No 24
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.29 E-value=9.4e-12 Score=95.38 Aligned_cols=102 Identities=24% Similarity=0.384 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHH
Q 024734 41 FYSKAFASLVLLPASLLFHRSQI--PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAII 117 (263)
Q Consensus 41 ~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~ 117 (263)
.+|+..+.+++..+...+++.+. +..+.|.+......|.++ ..++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988777443211 122234445566668888 699999999999999 58889999999999999999
Q ss_pred HhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 118 FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 118 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
++|||++++ ++.|++++++|++++..
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 999999999 99999999999999874
No 25
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.20 E-value=7.5e-09 Score=92.59 Aligned_cols=196 Identities=18% Similarity=0.216 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024734 11 GMMMAECAHVGLMFAGKAAMSDGMS--NLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG 88 (263)
Q Consensus 11 ~~l~a~~~wg~~~~~~k~~~~~~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (263)
.....++.||...- |+...+.-. |..+++.++....+.-.+.....++++.++.+. ......+++..++..+.
T Consensus 7 ~i~~~~~~~g~~qE--~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 7 GIFGGCCSYGILQE--KIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPL---KKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHH--HHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChH---HHHHHHHHHHHHHHHHH
Confidence 34445555553322 222223344 889999999988887776655443222223333 45566777778888999
Q ss_pred HHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCccc
Q 024734 89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQV 168 (263)
Q Consensus 89 ~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 168 (263)
..+++|+|...-.++-.+.|+.+++++.+++++|.+++ ++.++.+..+|+.+....+..+.. + .
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~------~----~ 145 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS------S----S 145 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc------c----c
Confidence 99999999999999999999999999999999999999 999999999999887643321100 0 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 024734 169 FMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLV 227 (263)
Q Consensus 169 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 227 (263)
+....+...|+.+.+.+.++-+...+.++|..++++ ++.+.++|...++.+...+....
T Consensus 146 ~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 146 NSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222334999999999999999999999998765 37899999999999988888777
No 26
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.19 E-value=5.8e-10 Score=99.37 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQ 85 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (263)
..|.++.+.++++|+...+..|...++ .+|..... ..+...+.+.....+. .....+.+.|..+...++...+++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSPQ-PAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhcC-ccccCCHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999986544 78876532 3333444433333221 112345667766666665338899
Q ss_pred HHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 86 ~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
.+|++++++.++++++.+.+++|+++.++++++++|+++.. +++|.++.+.|+.+..
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999 9999999999998765
No 27
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.14 E-value=2.3e-09 Score=98.01 Aligned_cols=135 Identities=10% Similarity=0.106 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCHHHHHHHHHHHHHH
Q 024734 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSN-LVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLG 81 (263)
Q Consensus 7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ 81 (263)
.+.+.++.++++|+...+..|...++ .|| ....++...++.+.+.+.....++... ...+... ...+..++..
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t 266 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence 37788999999999999999987655 644 466777777777776665555433211 1122222 2244455444
Q ss_pred HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
.+.+.+|++++++.+++.++...+++|+++.++++++++|++++. +++|.++.+.|+.+...
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999 99999999999988763
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.11 E-value=4.1e-09 Score=94.06 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDG--MSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPILSAFFLLG 78 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g 78 (263)
..|.++.+.++++|+...+..|...++. .+......+-...+.+.+.......++.. ....+.+.|..++..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4688999999999999999999864431 22233344445555444443333333211 1234667788888999
Q ss_pred HHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 79 FLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 79 ~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
+++ .+.+.+|+.++++.++++++.+.+++|+++.++++++++|+++.. +++|.++.++|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 999 899999999999999999999999999999999999999999999 9999999999998765
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.09 E-value=1.1e-09 Score=96.94 Aligned_cols=134 Identities=16% Similarity=0.069 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNL----VFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL 80 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (263)
+.++..+.+.++++|+...+..|...++ .+|. ....+.+...+..+.+.....+++.... +.+.+......+.+
T Consensus 142 ~~~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 142 RRKAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFP-YARQILPSATLGGL 219 (281)
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHHH
Confidence 3467778889999999999998875332 4443 2233333333222222222222211111 22233344555666
Q ss_pred H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
. .+++.++++++++.+++.++.+.+++|+++.++++++++|++++. +++|.++.++|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 6 889999999999999999999999999999999999999999999 99999999999975
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.02 E-value=2.4e-09 Score=95.62 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHHHHHHHHHHhccCCCCC---------CCH-HHHHH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP---------LTL-PILSA 73 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---------~~~-~~~~~ 73 (263)
+..|.++.+++++.|+...+..|...++ +.||..+..+....+.+.+.|+....+...... .+. ..+..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 3568899999999999999999987651 499999999999999999999876544221100 010 11111
Q ss_pred HHHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 74 FFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 74 ~~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
.+..+... ...+.+++.++++++++.+++..++.|++++++++++++|+++.. +++|..+.+.|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 22233323 445567788999999999999999999999999999999999999 99999999999988663
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.86 E-value=1.4e-07 Score=81.92 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
++|+.....+=+++..+.+.+.+.++++.+++.-.++..+-.++|++++++++|+|++++ ||.++.+.++|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 456666666667777889999999999999999999999999999999999999999999 99999999999988
Q ss_pred hhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHH
Q 024734 147 MTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSA-EFIVVFFYCFFVAIQSAILC 225 (263)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~ 225 (263)
+...+.... ..+ .+.+.+..+...+...|.++.++++++-++..+...|..|+.+. ...........|.+..++..
T Consensus 87 v~~~~~~~~--~~~-~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~ 163 (244)
T PF04142_consen 87 VQLSSSQSS--DNS-SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL 163 (244)
T ss_pred eecCCcccc--ccc-cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 764222110 000 00001011123456789999999999999999999999987632 34555555666666665554
Q ss_pred HHH
Q 024734 226 LVM 228 (263)
Q Consensus 226 ~~~ 228 (263)
...
T Consensus 164 ~~~ 166 (244)
T PF04142_consen 164 LLS 166 (244)
T ss_pred hcc
Confidence 443
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.84 E-value=9.8e-08 Score=85.11 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024734 10 IGMMMAECAHVGLMFAGKAAMSDG-MSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG 88 (263)
Q Consensus 10 l~~l~a~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (263)
...+.++++|+...+..|...++. .++.....+-..++.+.+.+.... ........+...+......|+....++.++
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999998864321 223333344444444433322110 000011112222333444555447899999
Q ss_pred HHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 89 ~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
++++++.+++.++.+.+++|++..++++++++|+++.. +++|+++.++|+.++..
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999888763
No 33
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.81 E-value=1.7e-07 Score=85.58 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHHHHHHHHHHhccCCC-----------CCCC
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQI-----------PPLT 67 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----------~~~~ 67 (263)
+..|.++.++++++|+...+..|...++ ..++..+..+....++++++|+....+.... ....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 3568999999999999999999997753 2567777777788999999998765432110 0001
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 68 LPILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 68 ~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
........+.+.+. .+.+...|++++++++..+++..++.|++++++++++++|+++.. +++|.++.+.|+.+
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 11111122222222 455555667999999999999999999999999999999999999 99999999999976
Q ss_pred hh
Q 024734 147 MT 148 (263)
Q Consensus 147 i~ 148 (263)
-.
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 43
No 34
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.80 E-value=2.2e-07 Score=74.26 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHHHHHHHHHHhccCCC-C-----CC-----CHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQI-P-----PL-----TLPI 70 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~-----~~-----~~~~ 70 (263)
|.+..+.+.++-+...+..|...++ +.+|.++..+-...+.+++++.....++.+. + .. +.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4567888899999999999987765 6999999999999999999999887765431 0 00 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
+..++..|+++...+...+..++++++...+++...-.+.+.++++++++|+++.+ +++|+.+++.|+.+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 45555667777889999999999999999999999999999999999999999999 99999999999864
No 35
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.80 E-value=2.6e-07 Score=80.72 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVF-YSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (263)
..+..+.+.+++.|+...+..|... + .++..... +.+........+.. ..... ...+.+++......|+++ ..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999765 3 77777777 45442222222222 11111 234567777888889998 67
Q ss_pred HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
.+.++++++++.+++.++.+.+++|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 9999999999998765
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.79 E-value=1e-07 Score=84.90 Aligned_cols=129 Identities=17% Similarity=0.139 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH---HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKA---FASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT 82 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (263)
.|+.+..+++.+.++......|.. + .||....+.... +++.++.+.. + + .++. +.+.....+..|++..
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~~-~~~~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKPL-KKYAILLNILPGLMWG 222 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h-c-ccch-HHHHHHHHHHHHHHHH
Confidence 789999999999999999999965 3 889988555544 3444333322 1 1 1112 2333334455777778
Q ss_pred HHHHHHHHhhh-hcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchh----hHHHHHHHHHHHhh
Q 024734 83 SSQFFGYAGIY-YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKS----VGTIVLITGAFIMT 148 (263)
Q Consensus 83 ~~~~~~~~al~-~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~li~ 148 (263)
.++.+|+.+.+ +.+++.++++.+.+|+...+++++++||+.+++ ++ +|.++.+.|+.++.
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 88889999999 999999999999999999999999999999999 99 99999999998765
No 37
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.58 E-value=6.2e-07 Score=80.23 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=139.1
Q ss_pred HHHHhh--CCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhh
Q 024734 26 GKAAMS--DGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTAL 103 (263)
Q Consensus 26 ~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil 103 (263)
.|..++ +---|..+...+...+.+...........+..+..++..+..++.+|+...+...+-..++++.+++-.-.+
T Consensus 36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i 115 (316)
T KOG1441|consen 36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI 115 (316)
T ss_pred eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHH
Confidence 366665 446688888888877777666654443222222112233455677788888888899999999999999999
Q ss_pred ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHH
Q 024734 104 LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLA 183 (263)
Q Consensus 104 ~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l 183 (263)
-.++|.++.++++++.+|+.++. .+..+.....|+.+.+.. ..+.+..|.+.++
T Consensus 116 Ka~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------e~~fn~~G~i~a~ 169 (316)
T KOG1441|consen 116 KALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------ELSFNLFGFISAM 169 (316)
T ss_pred HhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------cccccHHHHHHHH
Confidence 99999999999999999999999 888888888888775421 1223457999999
Q ss_pred HHHHHHHHHHHHHHHHHhh--cC-chhHHHHHHHHHHHHHHH-HHHHHHccC
Q 024734 184 VDCVFTSAWFIVQASILKK--FS-AEFIVVFFYCFFVAIQSA-ILCLVMERD 231 (263)
Q Consensus 184 ~aa~~~a~~~v~~k~~~~~--~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~ 231 (263)
.+.+..+..+++.|+..++ ++ ++.+.+.++.-++.+.++ |.....|++
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~ 221 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN 221 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc
Confidence 9999999999999999852 22 489999999999999999 888776664
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.56 E-value=4.5e-07 Score=69.27 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=61.9
Q ss_pred HHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 75 FLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 75 ~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
...++.+ ..++.++..++++.|.+.+-.+.++.|+++.++++++++||++++ |++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3445566 788999999999999999999988999999999999999999999 9999999999998865
No 39
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.54 E-value=1.5e-06 Score=74.31 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS 83 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (263)
+..|..+.+.+..+|+..-+..|.+-+. .+.-.-+..-+.+++++.+|+...+.... -.+++....-+..+++. .+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhccc
Confidence 4578889999999999999998887543 55666777889999999999987544322 23455556667789999 99
Q ss_pred HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHH
Q 024734 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (263)
Q Consensus 84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 145 (263)
.+.+...++++.|...-+++.+++|.+.++.++++++|+++.. ||.|++..+++..
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa 278 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA 278 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 9999988777665
No 40
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.45 E-value=4.8e-06 Score=65.25 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 024734 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQ 85 (263)
Q Consensus 7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~ 85 (263)
.+++.++...++=+...++.|...++ .+..+.... . ...+. . . . ++ ...+..|+.. .+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~----~-~--~------~p---~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL----A-F--G------LA---LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH----H-H--h------cc---HHHHHHHHHHHHHHH
Confidence 36778888888888999999998765 544332221 1 00000 0 0 0 11 1246677888 8999
Q ss_pred HHHHHhhhhcCchhhhhhccchHHHHHHHHHH--HhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAII--FRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 86 ~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
.+|.+++++.|.+.+..+.+..|.++.+.++. +++|+++++ |++|+.+.++|+.++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888875 899999999 9999999999999876
No 41
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.00022 Score=64.11 Aligned_cols=208 Identities=12% Similarity=0.094 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHHHHHHHHHHhccC----CCCC------CCHHHHHH
Q 024734 7 APVIGMMMAECAHVGLMFAGKAAMSDG---MSNLVFVFYSKAFASLVLLPASLLFHRS----QIPP------LTLPILSA 73 (263)
Q Consensus 7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~------~~~~~~~~ 73 (263)
.-++.++...+-++...+..|....++ ..|...++.--++-.++.....+...|+ ..+. ..+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 445666777778899999999876544 5677777777666666666666555322 1111 13434444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCC
Q 024734 74 FFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGP 153 (263)
Q Consensus 74 ~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~ 153 (263)
..+=+.+-++.+-+++.++.+.+++.-.+...+--+.|+++..+++++|.+++ ||.+..+.++|+.++.....+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence 44445555777789999999999999999999999999999999999999999 999999999999987622111
Q ss_pred cccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHc
Q 024734 154 HLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSA-EFIVVFFYCFFVAIQSAILCLVME 229 (263)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 229 (263)
.. +++ ......+...|....+.+.+.=+...+...|.+++-.. -+..+.-..++|.++.+...+..+
T Consensus 169 -~~------~a~--~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d 236 (345)
T KOG2234|consen 169 -PT------GAK--SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD 236 (345)
T ss_pred -CC------Ccc--CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 000 02234456789999999999999999999999976432 344444445566655555554443
No 42
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.36 E-value=2.7e-05 Score=67.73 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=129.5
Q ss_pred HHHHHHHHHHh---hCCCC----hHHHHHHHHHHHHHHHHHHHHHhccCCCC-----------CC--CHHHHHHHHHHHH
Q 024734 20 VGLMFAGKAAM---SDGMS----NLVFVFYSKAFASLVLLPASLLFHRSQIP-----------PL--TLPILSAFFLLGF 79 (263)
Q Consensus 20 g~~~~~~k~~~---~~~~~----p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~g~ 79 (263)
..|.+++|.+- .+|-| |+..+..-|+--..++..+.+++.|...+ .. +.+. ...+.=++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHH
Confidence 45777888763 23333 45444444444456666666655443211 00 1111 11122234
Q ss_pred HHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccC
Q 024734 80 LGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS 159 (263)
Q Consensus 80 ~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 159 (263)
+...+..+.+.|+.+|+++.--.+-...-+|+.+++.-+++++++.+ ||.|+....+|++++...+- +. .+
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~-~~--~~ 165 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDV-HL--VT 165 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeec-cc--cc
Confidence 44778889999999999999888988999999999999999999999 99999999999988753211 00 01
Q ss_pred CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHH
Q 024734 160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILC 225 (263)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~ 225 (263)
|+ -...++...|+++.+.+-+.-|...++-.|.+++.. +|.+...|+.++|.+....++
T Consensus 166 ~p-------~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 166 DP-------YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred CC-------ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 11 112355678999999999999999999988888643 489999999999965544443
No 43
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.35 E-value=3.9e-08 Score=84.04 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=130.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHH
Q 024734 35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFIL 114 (263)
Q Consensus 35 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll 114 (263)
.|..-.++....-+++-.++..+++ +..+. .|.+.+++++...=++.+...|.+||+-+...++-.-.-..+.++
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR~--~~~~~---~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l 121 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFRR--KYIKA---KWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL 121 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhhh--HHHHH---HHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence 3666677777666777777666532 11111 223466677777666777888999999999999977666678899
Q ss_pred HHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024734 115 AIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFI 194 (263)
Q Consensus 115 ~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v 194 (263)
+|+++|.|-++. |+.|+++|+.|++++.+.+ -+.. +.+++++...||.+++++|-+||..++
T Consensus 122 sw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD-V~ag-----------d~aggsnp~~GD~lvi~GATlYaVSNv 183 (336)
T KOG2766|consen 122 SWFFLKTRYRLM------KISGVVICIVGVVMVVFSD-VHAG-----------DRAGGSNPVKGDFLVIAGATLYAVSNV 183 (336)
T ss_pred HHHHHHHHHhhh------eeeeEEeEecceEEEEEee-eccc-----------cccCCCCCccCcEEEEecceeeeeccc
Confidence 999999999999 9999999999999887532 1111 134567778899999999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 195 VQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 195 ~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
....+.++.| ....+....++|++...+= ...+.
T Consensus 184 ~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~ 217 (336)
T KOG2766|consen 184 SEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFER 217 (336)
T ss_pred cHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 9999999986 8999999999999888665 44554
No 44
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.35 E-value=1.5e-05 Score=72.08 Aligned_cols=139 Identities=12% Similarity=0.056 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHHHHHH
Q 024734 4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLG 81 (263)
Q Consensus 4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 81 (263)
+..+|-+.++.++.++|...+.-+....+ .|+.++.+.=.+++.++..+.....+++...+. +.+.....+.-++..
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l 243 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL 243 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence 56789999999999999999999988765 899999988888999888887776666544333 334333222222222
Q ss_pred HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
...+.+.-..+++++|+...+=.-+...++.+++++++|+++++. .++|.++.++|.++...
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 555566677888899987777777889999999999999999999 99999999999987654
No 45
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=8.7e-05 Score=65.76 Aligned_cols=195 Identities=16% Similarity=0.192 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHH--HHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024734 9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFV--FYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF 86 (263)
Q Consensus 9 ~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (263)
+...+.-|+.--...+..|.++..-=-|..+. .++.+...+.+...... +--+.++++++..+.++...++-.+...
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 34444444444445566677664322233333 37777766666554322 1111245666666666766666555556
Q ss_pred HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCc
Q 024734 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL 166 (263)
Q Consensus 87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 166 (263)
.-..+++|.+...-+++-+..|+++++....+++.|++++ .|..+...++|.......
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~---------------- 150 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT---------------- 150 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc----------------
Confidence 6678999999999999999999999999999999999999 999999988888765421
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 167 ~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
+......|..+.+...+.-+.+.+..|+..+..+ ..+.+++|..+..........+++|+
T Consensus 151 ----d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge 211 (314)
T KOG1444|consen 151 ----DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE 211 (314)
T ss_pred ----cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence 1112234889999999999999999999887532 26789999999999988888877765
No 46
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.30 E-value=3.1e-06 Score=70.03 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCC
Q 024734 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL 160 (263)
Q Consensus 81 ~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~ 160 (263)
.+..++.|..+++..+++.++.+..+.--|+.++++++++||+... |+++.++++.|++++... +
T Consensus 63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~-D-------- 127 (290)
T KOG4314|consen 63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYA-D-------- 127 (290)
T ss_pred EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEec-c--------
Confidence 3678889999999999999999999999999999999999999999 999999999999987632 2
Q ss_pred CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734 161 PPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF 203 (263)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 203 (263)
+...+.+.|+.+++.|+..-|+|.++.|+...+-
T Consensus 128 ---------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 128 ---------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA 161 (290)
T ss_pred ---------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1234557899999999999999999999988764
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.16 E-value=0.00018 Score=65.31 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=117.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHHHHHHH-HHHHhccCC---CCCCCHHHHHHHH
Q 024734 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFY-SKAFASLVLLP-ASLLFHRSQ---IPPLTLPILSAFF 75 (263)
Q Consensus 1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~l~l~~-~~~~~~~~~---~~~~~~~~~~~~~ 75 (263)
|+++-..+++..+.++++||+.+.-.|...+ . +++.-.. -..++.++.-. ......+.. ....+.+.+...+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~k~--w-~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKVKK--W-SWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhcccccccccCC--C-chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 6677889999999999999999999998432 2 2222211 11111111110 011111110 0234566666667
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhhhhc-cchHHHHHHHHHHHhhhcc---cccccCccchhhHHHHHHHHHHHhhhcc
Q 024734 76 LLGFLGTSSQFFGYAGIYYSSPTLSTALL-NLVPGFTFILAIIFRVEKL---DWRSSSSLAKSVGTIVLITGAFIMTYYK 151 (263)
Q Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~asil~-~~~Pv~~~ll~~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~li~~~~ 151 (263)
+.|.+-...+..++.++++.+.+.+..+. .+.-+...++..++++|-. +.++ ...-.+|+++.++|+.+.....
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhh
Confidence 77777799999999999999999999774 4888899999999998754 3331 1116788999999998876411
Q ss_pred CCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHH
Q 024734 152 GPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWF 193 (263)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~ 193 (263)
... |+ .+.+++..+.+...|...+++|.+.++.|+
T Consensus 156 ~~k-----~~--~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 156 QLK-----ER--KMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred hhc-----cc--ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 110 00 000000223456679999999999999999
No 48
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.15 E-value=0.00027 Score=61.94 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 68 LPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
.+.+...++.|++..+.|..++.+.++.+.+++.-+.+ ..=+.+.++++++++|.-+.+++. .-.+++++.++|+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHH
Confidence 36666677778888999999999999999999998876 666678889999999998877320 023477777888876
Q ss_pred hhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 024734 147 MTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCL 226 (263)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 226 (263)
.+..++.+. ..++..+..-|....+++++.|..|....|. .+.+ +.+..+=|.+.=.+..+.+..
T Consensus 120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHHHHHHHHHHHHHhh
Confidence 553222110 0112344566999999999999999999765 3443 677766665433333334443
No 49
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.07 E-value=7.4e-05 Score=65.78 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 024734 18 AHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI---PPLTLPILSA-FFLLGFLGTSSQFFGYAGIY 93 (263)
Q Consensus 18 ~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~~~~~~al~ 93 (263)
.-|..+...+...+. -=|..++.+..++-.++-......++++.. -..+|++..+ +...|+..+..-++..+++.
T Consensus 28 Si~Ltf~~~~~~~~f-~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~ 106 (349)
T KOG1443|consen 28 SIGLTFYFKWLTKNF-HFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLE 106 (349)
T ss_pred HHHHHHHhhhhhcCc-CCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceee
Confidence 334455555554444 236777766655544443333333333222 2456665443 33456655777788999999
Q ss_pred hcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCc
Q 024734 94 YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQT 173 (263)
Q Consensus 94 ~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
|++.+.-+..-...++|+.+++.++.-||++|. -..-+.+...|+.+.+. +. ++
T Consensus 107 yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~-Ks------------------Tq- 160 (349)
T KOG1443|consen 107 YVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY-KS------------------TQ- 160 (349)
T ss_pred eeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe-cc------------------cc-
Confidence 999999999999999999999999999999988 54444455555555442 22 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----chhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734 174 NWVFGGLLLAVDCVFTSAWFIVQASILKKFS----AEFIVVFFYCFFVAIQSAILCLVMERD 231 (263)
Q Consensus 174 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~ 231 (263)
-...|..+..+|+++-++-=...++..++.| +|+..+....-.-.+..+|..+.+|+.
T Consensus 161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 2245888888777766665555555555433 478888887777778888888888874
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.92 E-value=0.00028 Score=63.14 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHHHHHHH--hccCCC----CCCCHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAM-SDGMSNLVFVFYSKAFASLVLLPASLL--FHRSQI----PPLTLPILSAFFLLGFL 80 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~g~~ 80 (263)
|++.++.+.++=|.....-+... +++.++.+..++-...+.++.++.... .+.... ...+++.+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999887765 566999999999999999888877766 222111 11233344555666666
Q ss_pred HHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 81 ~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
+...+.+.+.-.++.++...+++..+--.++.++++++++|++++. +|+|+++.+.|..+=.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 6778888888899999999999999999999999999999999999 9999999999997744
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.77 E-value=0.00044 Score=60.60 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHH-HHHHhccCCCCCCCHHHHHHHHHHHHHHH
Q 024734 4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLP-ASLLFHRSQIPPLTLPILSAFFLLGFLGT 82 (263)
Q Consensus 4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (263)
+..|+++.+++..+.+.....+.|.. + +||++..+=.. ++.++-.. +....+++. .+++.+. -++.|++..
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPqa-iGm~i~a~i~~~~~~~~~---~~k~~~~-nil~G~~w~ 206 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQA-IGMLIGAFIFNLFSKKPF---FEKKSWK-NILTGLIWG 206 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHHH-HHHHHHHHHHhhcccccc---cccchHH-hhHHHHHHH
Confidence 44689999999999998888888864 3 88887776443 33332222 222222211 2223333 355677778
Q ss_pred HHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhccccc
Q 024734 83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126 (263)
Q Consensus 83 ~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~ 126 (263)
.++.+++.+.+..+.+.+-.+..+.++...+.+.+++||+-++|
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 88999999999999999999999999999999999999999888
No 52
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00022 Score=62.06 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHH
Q 024734 36 NLVFVFYSKAFASLVLLPASLLFHRSQ----IP--PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPG 109 (263)
Q Consensus 36 p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv 109 (263)
|..+..++.++...+.+.+.....+-+ .+ +++.+.-....-+.+.-.+.-.+-.+.++|.+++---+=-.+.-+
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttv 140 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTV 140 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhh
Confidence 777888888888777666554332211 12 122222122222222212222244567777777654444567889
Q ss_pred HHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHH
Q 024734 110 FTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFT 189 (263)
Q Consensus 110 ~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~ 189 (263)
|+.+++++++++|-+.. ...++.+.+.|-.+ |- |+ +...+.-...|.++.+.|+++-
T Consensus 141 FtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----Gv------dq------E~~~~~ls~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 141 FTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GV------DQ------EGSTGTLSWIGVIFGVLASLAV 197 (347)
T ss_pred HHHHhHHhhcccccccc------cceeehhheehhee-----cc------cc------ccccCccchhhhHHHHHHHHHH
Confidence 99999999999999988 77777766666543 11 10 1234455578999999999999
Q ss_pred HHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHccCCCccc--ccCCch-hhHHhhHhhhhcccccc
Q 024734 190 SAWFIVQASILKKFSA-EFIVVFFYCFFVAIQSAILCLVMERDLSSWS--LKPGVR-LVAVLYSVSRSKKKKNV 259 (263)
Q Consensus 190 a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~y~gv~~t~~~~~ 259 (263)
|+..+..||......| -+..+.|..+.+.+.++|...+.++-...+. -.+... |..+...|+++=.++|+
T Consensus 198 Alnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv 271 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV 271 (347)
T ss_pred HHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe
Confidence 9999999998887654 5888999999999999999887665322233 222222 33444666766666654
No 53
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.68 E-value=0.0012 Score=57.41 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024734 11 GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLGTSSQFFGY 89 (263)
Q Consensus 11 ~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 89 (263)
..+.++++|+...+..|...++ ++.+...... ...++..+.....+... ......++|..++..|+...+++.+++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~ 226 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFV 226 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999886432 3322222111 11111111111111111 111223477777777876688999999
Q ss_pred HhhhhcCchhhhhhccchHHHHHHHHHHH
Q 024734 90 AGIYYSSPTLSTALLNLVPGFTFILAIIF 118 (263)
Q Consensus 90 ~al~~~~~~~asil~~~~Pv~~~ll~~~~ 118 (263)
+++++.|++.++.+.|++|+++.+++.++
T Consensus 227 ~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 227 IAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999764
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.54 E-value=0.0038 Score=54.89 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 024734 14 MAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ--IPPLTLPILSAFFLLGFLGTSSQFFGYAG 91 (263)
Q Consensus 14 ~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 91 (263)
..++.||..+..=|.. ++|+.+=...-.+.-.+.-+.+.+...... ....+.+++..+...|...+.+..++..|
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a 231 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA 231 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456677777666643 277776666666555555555444443322 11234456677778899889999999999
Q ss_pred hhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 92 IYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 92 l~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
-+++|-+.-++++|.+|....++++++++|+++.- |..+.+..-+|..+..
T Consensus 232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999888888887765
No 55
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.47 E-value=0.0026 Score=50.41 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024734 10 IGMMMAECAHVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG 88 (263)
Q Consensus 10 l~~l~a~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (263)
+..+.+.+.-+....+.-...++ .+ |+.-.++.+..+.+.+..+....+++..++.+.-. ++...-|+++.....+.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHH
Confidence 34444445555555444433333 54 99999999999999988887776654222221112 23445788888888888
Q ss_pred HHhhhhcCchhhhhhccc-hHHHHHHHHHH----HhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 89 YAGIYYSSPTLSTALLNL-VPGFTFILAII----FRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 89 ~~al~~~~~~~asil~~~-~Pv~~~ll~~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
.+...+.+++.+..+.-+ +=+...+++.+ .-++|++++ |.+|.++.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 999999999999877654 55667777875 356888888 99999999999863
No 56
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.45 E-value=0.00033 Score=53.38 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHh
Q 024734 13 MMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL-GTSSQFFGYAG 91 (263)
Q Consensus 13 l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a 91 (263)
++..++||.+.++.|.+... .++..-.. |..-....+ + .++| +.. .+. +-.+...|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L-----l--------~n~~---y~i--pf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL-----L--------LNPK---YII--PFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH-----H--------HhHH---HHH--HHHHHHHHHHHHHHH
Confidence 45678999999999998643 44433321 322111110 1 0122 211 222 36777889999
Q ss_pred hhhcCchhhhhhc-cchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 92 IYYSSPTLSTALL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 92 l~~~~~~~asil~-~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
+.+.+.+.+..+. .+.=++|.+.++++.+|..+++ .++|+++.++|+.+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 9999999999885 6788899999999988888888 999999999998653
No 57
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.33 E-value=0.0017 Score=58.18 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=88.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL 80 (263)
Q Consensus 1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (263)
|+....-|....+.++++-+.....-|....+ .+. ...| ++..++.-.|+..+ ..|++
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~~~~~~~l~~~~W--~~G~~ 58 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AGSGGRSYLRRPLW--WIGLL 58 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------ccchhhHHHhhHHH--HHHHH
Confidence 67777889999999999999999888876533 111 0000 00000111122112 23444
Q ss_pred H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
. .++..+.+.++.+.|++..+.+..+.-++..+++..+++||++++ ++.|+.+++.|..++..
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 4 677788899999999999999999999999999999999999999 99999999999988764
No 58
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.005 Score=52.68 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCC
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP 161 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 161 (263)
.+++.-...++++.|=-...+=-.+-|+=++++++.+.|++-+|+ +..-+...+.|+.+.. ++.+..
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv------ 162 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKV------ 162 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-cccccc------
Confidence 677777888999998888888888999999999999999999999 8888899999998754 332211
Q ss_pred CCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 162 PNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
.+..+....+|.++.++|--.=++....+.++.+.+. ...+++++..+++.+......+++++
T Consensus 163 ------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE 226 (337)
T KOG1580|consen 163 ------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE 226 (337)
T ss_pred ------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh
Confidence 0223445568999999998888888999888776543 36889999999998777665555554
No 59
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.035 Score=49.21 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHH
Q 024734 35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFIL 114 (263)
Q Consensus 35 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll 114 (263)
+|..+.+.+-+.+.++-..+. +.++.. ....+.|+.....++.+.+...+.+.+++|.+=-.-.+--.+=-+=+++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm 126 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAML--KWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM 126 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--hccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence 466677777767766554433 323222 12233445677788888888899999999987555444434333335678
Q ss_pred HHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024734 115 AIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFI 194 (263)
Q Consensus 115 ~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v 194 (263)
+.++.+.|.+.+ +-+-..+.-.|+.+....+... + . ......+...|.+++...-+.=+..+.
T Consensus 127 g~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s-----~-----~~~g~~ns~~G~~Ll~~~L~fDgfTn~ 189 (327)
T KOG1581|consen 127 GTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-S-----S-----SKSGRENSPIGILLLFGYLLFDGFTNA 189 (327)
T ss_pred HHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-C-----c-----cccCCCCchHhHHHHHHHHHHHhhHHh
Confidence 999999999999 7777777777876655432211 0 0 011234567899999988888888999
Q ss_pred HHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 024734 195 VQASILKKFS-AEFIVVFFYCFFVAIQSAILCLV 227 (263)
Q Consensus 195 ~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 227 (263)
.++++.++.. ++..++++..+++++........
T Consensus 190 tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~ 223 (327)
T KOG1581|consen 190 TQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL 223 (327)
T ss_pred HHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc
Confidence 9999988643 37999999999999888776443
No 60
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.10 E-value=0.0026 Score=48.36 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=56.2
Q ss_pred HHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 78 GFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 78 g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
.+.+ .+.+.++..++++.|.+.|=.+ ....-+.+.+.++++++|++++. +++|+.+.++|++.+.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444 6778888999999999988766 55777888999999999999999 9999999999999875
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.07 E-value=0.0024 Score=49.34 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 78 GFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 78 g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
.+.. .+++.++..++++.|.+.|=.+ ....-+.+.++++++++|++++. +++|+.+.++|++.+..
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 3444 6888899999999999988766 45788889999999999999999 99999999999988753
No 62
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.01 E-value=0.0023 Score=57.46 Aligned_cols=138 Identities=14% Similarity=0.218 Sum_probs=109.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHHHHH-HHHHHhccCCC---C--CCCHHHHHHH
Q 024734 4 VGLAPVIGMMMAECAHVGLMFAGKAAM---SDGMSNLVFVFYSKAFASLVLL-PASLLFHRSQI---P--PLTLPILSAF 74 (263)
Q Consensus 4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~ 74 (263)
-++.|....+.+.+..+.-.++.|..+ +++.++..+..+-.-++...++ |+....++... . ..+...+ ..
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-IL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HH
Confidence 467899999999999999999999987 4459999999999999999998 88776554322 1 1122222 23
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 75 FLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
.+...+..+.+...|..+.+++|-.-++....==.++.+.++.+++|+.++. +..|.++++.|+.+=.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 3344455778888999999999998888887777777888999999999999 9999999999998643
No 63
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.90 E-value=0.023 Score=43.12 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 82 TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
..++.+...++++.|.+.+=.+ ....-+.+.+.++++++|++++. |++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 6777888999999999988655 55777888899999999999999 999999999999875
No 64
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0042 Score=46.66 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 82 TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
..++.+.-.++++.|.+.|=.+ ....-+.+.+.++++++|+.+.. +++|+.+.++|++.+.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 6778889999999999988644 66788889999999999999999 9999999999998764
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.89 E-value=0.066 Score=48.82 Aligned_cols=145 Identities=14% Similarity=0.007 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHHHHHHHHH-------HHHHHHhhCCCChHHHHHHHHH---HHHHHHH-HHHHHh--ccCCC-----CC
Q 024734 4 VGLAPVIGMMMAECAHVGLM-------FAGKAAMSDGMSNLVFVFYSKA---FASLVLL-PASLLF--HRSQI-----PP 65 (263)
Q Consensus 4 ~~~~~~l~~l~a~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~--~~~~~-----~~ 65 (263)
+..|+++.++++.+..+... +..+.+.+.+.+|.....-.+. ++.++.- .++.++ ++++. ++
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 34789999999999888887 5555544456777766655554 4444332 222322 21211 11
Q ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhh---hc-cchHHHHHHHHHHHhhhcccccccCccchhhHH
Q 024734 66 LT----LPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA---LL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGT 137 (263)
Q Consensus 66 ~~----~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asi---l~-~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~ 137 (263)
.+ .|+.....+.|++-...+.++..+-...+.+.+.+ +. .+.-++..+.+. ++||+-+-.|..-+.-++|+
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~ 329 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGC 329 (345)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHH
Confidence 12 22322224445555777778888888886666655 65 444477777777 59999883333333468899
Q ss_pred HHHHHHHHHhhh
Q 024734 138 IVLITGAFIMTY 149 (263)
Q Consensus 138 ~l~~~Gv~li~~ 149 (263)
++.++|..++..
T Consensus 330 vliI~g~~lig~ 341 (345)
T PRK13499 330 VVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHhh
Confidence 999999888763
No 66
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.84 E-value=0.0072 Score=45.56 Aligned_cols=64 Identities=9% Similarity=-0.039 Sum_probs=55.3
Q ss_pred HHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 79 FLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 79 ~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
+.+ ..++.+...++++.|.+.+=.+ ....-+.+.+.++++++|++++. |++|+.+.++|++.+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 344 6788889999999999988655 55788888999999999999999 9999999999998764
No 67
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.83 E-value=0.00088 Score=58.16 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024734 7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF 86 (263)
Q Consensus 7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (263)
++..+.+..++.=+..++..|.. .+..+....+.+=.+++.+.-+..+...+.-.. ...+|||+....+|+++.+.|.
T Consensus 191 ~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhhhHHHH
Confidence 44566666667667777777764 334666666655555555544443333332223 3356777777789999999999
Q ss_pred HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
+...|++.--++..++..++.-++..+..+++++|.+++. .|.|+++.+...+....
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence 9999999999999999999999999999999999999999 99999888777766653
No 68
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.68 E-value=0.02 Score=52.05 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHHHHHHHHHHhccC--CC-CCCCHHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSD---GMSNLVFVFYSKAFASLVLLPASLLFHRS--QI-PPLTLPILSAFFLLGF 79 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~-~~~~~~~~~~~~~~g~ 79 (263)
..|-++.+++++.+|......|.-.++ ++|--.+-++-.++..++++|..+....- ++ .-.+..+...+++.++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 678899999999999999999875432 37777777888888888888765543321 11 1112222334567788
Q ss_pred HH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhc
Q 024734 80 LG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY 150 (263)
Q Consensus 80 ~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 150 (263)
++ .+.-++|..|.-.|++-.+++=+.+.--..++...++.+.++++. .++|.+..+.|-+++...
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence 88 899999999999999999998777655558889999999999999 999999999999887643
No 69
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.00047 Score=59.12 Aligned_cols=183 Identities=11% Similarity=0.094 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF 87 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (263)
.++..++-++.||+...+.... +=+|.+-.. -..++++++....++. . .|..+.+.+..-++.|.+....|..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~l-GtT~GALifaiiv~~~-~--~p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTL-GTTLGALIFAIIVFLF-V--SPELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhh-hccHHHHHHHHHHhee-e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence 4667788899999988776542 244555442 2334444444444333 2 2344666655556667777899999
Q ss_pred HHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCc
Q 024734 88 GYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL 166 (263)
Q Consensus 88 ~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 166 (263)
+|-++++.+++.+..+++ ..-+-+.+++++.+||-.+..+.. ...+++++.++|+.+-. .+ ||.|.
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~I--lG~iAliliviG~~lTs-~~--------~~~nk-- 142 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQII--LGFIALILIVIGIYLTS-KQ--------DRNNK-- 142 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHH--HHHHHHHHHHHhheEee-ee--------ccccc--
Confidence 999999999999998866 777888899999999988776210 01223344444443322 11 11110
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 024734 167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYC 214 (263)
Q Consensus 167 ~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~ 214 (263)
+.++.++.-.|....+.|.++|-.|.++.+... .+ ..+...-|.
T Consensus 143 -~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~-g~saiLPqA 186 (288)
T COG4975 143 -EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VD-GLSAILPQA 186 (288)
T ss_pred -cccChHhhhhheeeeeeeccceeeeEeeecccc--cc-chhhhhHHH
Confidence 112334455688888889999999998876553 32 444444443
No 70
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.45 E-value=0.0086 Score=44.06 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhcCchhhhh-hccchHHHHHHHHHHHhhhcccccccCccchhhHHHH
Q 024734 82 TSSQFFGYAGIYYSSPTLSTA-LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIV 139 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asi-l~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l 139 (263)
..++.++..++++.|.+.+=. ...+..+.+.+.++++++|+++.+ |+.|+.+
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 677789999999999999954 466899999999999999999999 9998765
No 71
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.09 E-value=0.029 Score=47.69 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHH
Q 024734 79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (263)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 145 (263)
+.+...+.+..+.+++.++..-+....+.++++.+++.++++|+++.. ++.|..+.+.|+.
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 344667778899999999999999999999999999999999999999 9999999888764
No 72
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=95.99 E-value=0.0079 Score=45.38 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHhhHhhhhccccccc
Q 024734 187 VFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVC 260 (263)
Q Consensus 187 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~gv~~t~~~~~~ 260 (263)
++|+.+.+..|+..++.| +...++++...+++ .++.....+... ....+...+..+++.+++++++++.+
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHH
Confidence 468999999999999986 99999999999998 777766655432 11222244677888888888877764
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.22 Score=39.92 Aligned_cols=136 Identities=11% Similarity=-0.023 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQ 85 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (263)
...++..+.+.++-.....+.-...+..=+|+.-.+..+..+...+..+.+..++++.....++..++...-|+++..+-
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence 34445555555554444444433323313599999999999999888888774443332211222233455567765554
Q ss_pred HHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHH-h---hhcccccccCccchhhHHHHHHHHHHHh
Q 024734 86 FFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIF-R---VEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 86 ~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~-~---~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
........+.+++....+ ..-+=+...+++.+= + ++++++. +++|+++.++|+.++
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~ 144 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA 144 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence 455556666666665544 334555556666552 2 2566666 999999999995543
No 74
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.027 Score=48.32 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHH
Q 024734 36 NLVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFT 111 (263)
Q Consensus 36 p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~ 111 (263)
...+.++-.+-+.+.+..-.++.++-.. ....+..|+.+...++.+.++|.+.|.-+.+-++-.-|++..+--.|+
T Consensus 202 g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFT 281 (337)
T KOG1580|consen 202 GTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFT 281 (337)
T ss_pred chhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHH
Confidence 3445555555555555544333322110 112345667788888888999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 112 FILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 112 ~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
++.++++++++++.+ ||+|.++.|.|...=
T Consensus 282 il~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 282 ILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 999999999999999 999999999987653
No 75
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0012 Score=58.69 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=88.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL 80 (263)
Q Consensus 1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (263)
|+.++..|....+...++.|.+++.-|....+ ... ...|. ++...+.+ |++ ....|++
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~ra--------------~~gg~~yl--~~~--~Ww~G~l 72 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLRA--------------GEGGYGYL--KEP--LWWAGML 72 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hcccc--------------cCCCcchh--hhH--HHHHHHH
Confidence 45566777777888888888888888876543 111 11111 11111122 221 2234556
Q ss_pred H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
- ..+...-|.+..+.|++..+.+..+.-+..++++..+++||+++. ..+|++++++|..++..
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence 6 777788899999999999999999999999999999999999999 99999999999988764
No 76
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.19 Score=44.72 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=92.1
Q ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccc
Q 024734 31 SDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNL 106 (263)
Q Consensus 31 ~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~ 106 (263)
..+++++++.+.-.+...+.-......++.... .+.+++.++.++..+..++.+|.+.|+-+..-++-.-+.++.+
T Consensus 197 ~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~tt 276 (327)
T KOG1581|consen 197 KYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTT 276 (327)
T ss_pred cCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHH
Confidence 455999999998888888877666444332211 2456777777888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 107 VPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 107 ~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
==++.++++.+.+++++++. +|.|+.+.|.|+.+=.
T Consensus 277 Rk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 277 RKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence 99999999999999999999 9999999999887643
No 77
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.09 E-value=0.95 Score=41.04 Aligned_cols=183 Identities=15% Similarity=0.081 Sum_probs=108.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhcc-CCC----CCCCHHHHHHHH
Q 024734 1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR-SQI----PPLTLPILSAFF 75 (263)
Q Consensus 1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~----~~~~~~~~~~~~ 75 (263)
|+++-..+++...++.+.=|+.++-.|...+-+...+-++ ..+-+-++.|+....-. +.. ...+...+....
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~ 77 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTF 77 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHH
Confidence 7778889999999999999999999998765433333333 33333344443332111 111 122334445556
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhhh-hccchHHHHHHHHHHHhhhc---ccccccCccchhhHHHHHHHHHHHhhhcc
Q 024734 76 LLGFLGTSSQFFGYAGIYYSSPTLSTA-LLNLVPGFTFILAIIFRVEK---LDWRSSSSLAKSVGTIVLITGAFIMTYYK 151 (263)
Q Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~asi-l~~~~Pv~~~ll~~~~~~e~---~~~~~~~~~~~~~g~~l~~~Gv~li~~~~ 151 (263)
+.|++-......|=.+++|.+.+...- ...+.-++..++-.++.++- ++. .-.+..++|++++++|+.++....
T Consensus 78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~--~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLAT--PSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccC--CCchhhhhHHHHHHHHHHHHhHHH
Confidence 677777777778889999998887653 34455555555544443211 110 112338999999999999876321
Q ss_pred CCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 024734 152 GPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQ 196 (263)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~ 196 (263)
... ||.. .++..+.+.-.|.+.++.|.+.=|..+.-.
T Consensus 156 ~~K-----e~~~---~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 156 SMK-----EKEL---GEEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred Hhh-----hhhh---ccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 100 0100 011223345579999999988777766543
No 78
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.71 E-value=0.43 Score=40.76 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=101.8
Q ss_pred HHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCccc
Q 024734 89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQV 168 (263)
Q Consensus 89 ~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 168 (263)
--+++|.+...-++.-++..+.++.....+++.|++-. +....++.+..-+.-.. .+-+..
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w-~D~q~~------------ 146 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW-GDQQAS------------ 146 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc-chhhHH------------
Confidence 46788999999999999999999999999999999998 88888776665544331 111000
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHHHHHHHHHHHHccC-CCccccc-CCchhh
Q 024734 169 FMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKK--FSAEFIVVFFYCFFVAIQSAILCLVMERD-LSSWSLK-PGVRLV 244 (263)
Q Consensus 169 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~ 244 (263)
.........|.+++..-.+.-+.+-+..||..+- .. ....++|..+.+....+.+.+++|+- +.+.... +.....
T Consensus 147 ~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~ 225 (309)
T COG5070 147 AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLM 225 (309)
T ss_pred HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHH
Confidence 0000122347777888888888888888776652 32 58889999999999999998888752 2222211 223344
Q ss_pred HHhhHhhhhccccc
Q 024734 245 AVLYSVSRSKKKKN 258 (263)
Q Consensus 245 ~l~y~gv~~t~~~~ 258 (263)
+++--|+-+-+++|
T Consensus 226 am~ISgl~svgiSy 239 (309)
T COG5070 226 AMFISGLCSVGISY 239 (309)
T ss_pred HHHHHHHHHhhhhh
Confidence 55566666666655
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.13 E-value=1.2 Score=38.87 Aligned_cols=186 Identities=13% Similarity=0.055 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF 87 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (263)
|+++.+.+++.+|++++=.|.. +. -|++.+-.+-. .+..+...+.....+ .++..+ ...+-|.+...++.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~-~~i~~~g~~v~~~~~--~p~f~p----~amlgG~lW~~gN~~ 71 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMC-SGIFLVGLVVNLILG--FPPFYP----WAMLGGALWATGNIL 71 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHH-HHHHHHHHHHHHhcC--CCccee----HHHhhhhhhhcCcee
Confidence 4678899999999999999974 33 67766554443 232222222222222 122222 344556666777777
Q ss_pred HHHhhhhcCchhhhhhccch-HHHHHHHHHH-HhhhcccccccCccchhhHHHHHHHHHHHhhhccCCccc-ccCCCCCC
Q 024734 88 GYAGIYYSSPTLSTALLNLV-PGFTFILAII-FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL-MTSLPPNS 164 (263)
Q Consensus 88 ~~~al~~~~~~~asil~~~~-Pv~~~ll~~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~-~~~~~~~~ 164 (263)
-.-.++..+.+.+-.+=++. -+..-..+.+ +++++.+..+.+ ....+|++++++|..+..+-+..... ..++++++
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~-~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~ 150 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSP-WLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP 150 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchh-HHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence 78888888888888775543 3333333433 344333322211 22788999999988776543322110 00000000
Q ss_pred -------Ccc-------cCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734 165 -------SLQ-------VFM------PQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF 203 (263)
Q Consensus 165 -------~~~-------~~~------~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 203 (263)
+.+ +.+ ...+...|.++++.+++.|+...+=.....++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 000 000 011367899999999999999877666655553
No 80
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.57 E-value=0.36 Score=37.99 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-----C-chhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734 178 GGLLLAVDCVFTSAWFIVQASILKKF-----S-AEFIVVFFYCFFVAIQSAILCLVMERD 231 (263)
Q Consensus 178 G~ll~l~aa~~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 231 (263)
|..+++.|.++.+++.+..|+..++. . ++.++..+....+.+..+|..++.|++
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~ 60 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP 60 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67889999999999999999988873 2 589999999999999999999888764
No 81
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.37 E-value=1.3 Score=39.15 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=90.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH-HHhhCCCChHHHHHHHHHHHHHHH----HHHHHHhccCC---CCCCCHHHHHHH
Q 024734 3 KVGLAPVIGMMMAECAHVGLMFAGK-AAMSDGMSNLVFVFYSKAFASLVL----LPASLLFHRSQ---IPPLTLPILSAF 74 (263)
Q Consensus 3 ~~~~~~~l~~l~a~~~wg~~~~~~k-~~~~~~~~p~~~~~~R~~~a~l~l----~~~~~~~~~~~---~~~~~~~~~~~~ 74 (263)
++-+.|-++.+.+.++-+.-+++=. .....+++|.+.+++..+++..++ .|+..+.-.+. .++..+.||...
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 4456788999999999999888763 344456999999999998884433 33332221111 134444554433
Q ss_pred H---------HHHHHH-HHHHHH-HHHh---hhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHH
Q 024734 75 F---------LLGFLG-TSSQFF-GYAG---IYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVL 140 (263)
Q Consensus 75 ~---------~~g~~~-~~~~~~-~~~a---l~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~ 140 (263)
+ .+...+ ...-.+ .|.| -|+.++++=.++=.+--.+.-+++.....|+++.. ++.|.++-
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliL 325 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLIL 325 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHH
Confidence 2 122222 111111 2223 34457777777777777788888999999999999 99999999
Q ss_pred HHHHHHh
Q 024734 141 ITGAFIM 147 (263)
Q Consensus 141 ~~Gv~li 147 (263)
+.|+.+-
T Consensus 326 i~Gi~lY 332 (372)
T KOG3912|consen 326 IMGIILY 332 (372)
T ss_pred HHHHHHH
Confidence 9999763
No 82
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=1.2 Score=39.95 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHhccCC-----CC-CCCHHHHHHHHHHH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IP-PLTLPILSAFFLLG 78 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~~g 78 (263)
..||.++...++.=+......|.-.+ .+..-+.++++..+.+.+.+.....+.+... .+ -.+.+.+....+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 45788888888888888888887653 3366678889999999888888776554311 00 11233445556667
Q ss_pred HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
+++..-..+.++..+..++..-++.....-..+.+....+++++.++. ..+|+.+++.|-++=.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 777666778888999999988888886666667777777888999999 9999999999887644
No 83
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.06 E-value=2.1 Score=38.28 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHHHHHHHHHHhccCCC-------CCCC----HH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDG----MSNLVFVFYSKAFASLVLLPASLLFHRSQI-------PPLT----LP 69 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-------~~~~----~~ 69 (263)
+..|......+.++=|.-+.+.+..+++. -+|++..+.-.-.-.+.++|..+..++... ...+ .+
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 45677888888888888888888877542 346666655555556666676666654322 0111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 70 ILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
....+...|.+.++--..-|.-+..|+.-..++..-.-=+.+.+++....+|+++.. .|.|+.++..|+..=
T Consensus 242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 223333333333222223344455566666666666677889999999999999998 999999999999763
No 84
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.99 E-value=2.5 Score=36.71 Aligned_cols=128 Identities=13% Similarity=-0.025 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHHH-
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYS-KAFASLVLLPASLLFHRSQI-PPLTLPILSAFFLLGFLG- 81 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~- 81 (263)
...|+++.+.++++-|...+..-..+.++-.|+...-.+ ...+.++-++.....+..+. ...-.+.+-.....-++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 457888999999999999999855444333344333333 34444444443333222111 111111111111222222
Q ss_pred HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHH
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTI 138 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~ 138 (263)
+..-...-.-+||.+.-.=..-....-+++.++++.+++.+++.. ..+|..
T Consensus 192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~ 242 (244)
T PF04142_consen 192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA 242 (244)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence 445555667789998888888888899999999999999999988 776654
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.24 E-value=0.24 Score=42.81 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
++..| .-..-|+.....+.+++++-+..+.+.+--++.+.-+...+-+.++++||-++|.+.. -++|+++.+.|..+
T Consensus 206 ~K~t~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~--v~iGiilivvgai~ 282 (288)
T COG4975 206 NKYTW-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY--VIIGIILIVVGAIL 282 (288)
T ss_pred HHHHH-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh--hhhhHHHHHHHhhh
Confidence 44444 3456677778899999999999988888888888888889999999999999993210 23444444555544
No 86
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.69 E-value=8.5 Score=28.94 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCC----h--HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 024734 8 PVIGMMMAECAHVGLMFAGKAAMSDGMS----N--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG 81 (263)
Q Consensus 8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~----p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (263)
....++...++||...++.|.... +++ | ....++|- -+.. ..+++.+. -+ .++
T Consensus 4 ~~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe---------------~~tl-~l~w~Y~i-PF---llN 62 (125)
T KOG4831|consen 4 DMDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQE---------------MKTL-FLNWEYLI-PF---LLN 62 (125)
T ss_pred HHHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHH---------------HHHH-HHhHHHHH-HH---HHH
Confidence 345678889999999999998742 121 1 12222221 1100 11232221 11 234
Q ss_pred HHHHHHHHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 82 TSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 82 ~~~~~~~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
-++..+|+.-+++++-+.+.-+.+ +.-.|+.+.+..+..|...++ .++|+.+..+|+-+.
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 567778999999999999997755 677789999988887777777 899999999998664
No 87
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=88.20 E-value=3.2 Score=36.68 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCchhhhhhccchHHHHHHHH
Q 024734 37 LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY-SSPTLSTALLNLVPGFTFILA 115 (263)
Q Consensus 37 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~-~~~~~asil~~~~Pv~~~ll~ 115 (263)
..+++-++++-+.--++.---. ...+++.+.|++... ..++ +..+.+-.+++++ ++...=-++-.-.++-++.++
T Consensus 34 NLITFaqFlFia~eGlif~skf-~~~k~kiplk~Y~i~--V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g 109 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKF-FTVKPKIPLKDYAIT--VAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG 109 (330)
T ss_pred eehHHHHHHHHHHhceeeeccc-cccCCCCchhhhhee--hhee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence 4566666655544333221000 111256666664322 2222 4555666778877 455555566667899999999
Q ss_pred HHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccC---CCCchHHHHHHHHHHHHHHHHHH
Q 024734 116 IIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVF---MPQTNWVFGGLLLAVDCVFTSAW 192 (263)
Q Consensus 116 ~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~ll~l~aa~~~a~~ 192 (263)
+++.++|-+.+ |...+...=+|+++.+....... +++ .++++++ .....+..|+.+...|-+.-|.-
T Consensus 110 ~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~---~~~-~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 110 WILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDG---RSK-LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred HHhccceeehh------hhhhHHhhhhhheeEEeecCcch---hhh-hcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999988775433221 111 1111112 23345678988888888877777
Q ss_pred HHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 024734 193 FIVQASILKKFS-AEFIVVFFYCFFVAIQS 221 (263)
Q Consensus 193 ~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~ 221 (263)
.+.+...-++++ ++-+.++|.=..+...+
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~F 209 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLF 209 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchH
Confidence 777766666654 36778888776664433
No 88
>COG2510 Predicted membrane protein [Function unknown]
Probab=88.14 E-value=2.1 Score=33.45 Aligned_cols=76 Identities=11% Similarity=-0.049 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHhhHhhhhcccc
Q 024734 179 GLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKK 257 (263)
Q Consensus 179 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~gv~~t~~~ 257 (263)
..+++++++.+++..+..|--.++.+ |-..++...++..+....+.+..++.... .......|..++.-| +.++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSG-la~gls 80 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSG-LAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHH-HHHHHH
Confidence 57899999999999999998888785 77788888888887777777766542111 112335566666666 444433
No 89
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.98 E-value=4.5 Score=35.73 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhccCC--C---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchH
Q 024734 34 MSNLVFVFYSKAFASLVLLPASLLFHRSQ--I---PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVP 108 (263)
Q Consensus 34 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~P 108 (263)
-+..+++++...++.++++......++-. + ...+.|.....++.+..+.+++.+..--++.-++..++.+...--
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 56678888888888888877766654321 1 133556666777777777666666666666778889999999899
Q ss_pred HHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 109 GFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 109 v~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
-.|+++|++++.++++.. ..-|..+.+.|+.+-..
T Consensus 298 avTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 999999999999999999 88888888999977543
No 90
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=85.16 E-value=9.7 Score=32.05 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=57.5
Q ss_pred hhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcc----------cccCCCCCCCccc
Q 024734 99 LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHL----------LMTSLPPNSSLQV 168 (263)
Q Consensus 99 ~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~----------~~~~~~~~~~~~~ 168 (263)
......+..|+++++.++...+||.+.. |+++.++...|++.-...+.... ..+.+.. ++ .
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~-~~--~ 76 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS-SA--K 76 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC-Cc--c
Confidence 3445566788888888888888888877 88888888888865322111000 0000000 00 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734 169 FMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF 203 (263)
Q Consensus 169 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 203 (263)
.....+...|....+.+..+=+...+.+++..++.
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 01123556777777777777777888877765543
No 91
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=2 Score=38.00 Aligned_cols=142 Identities=20% Similarity=0.156 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHHHHHHHHHHhccCCC----CCC-CHHHHHHHHHHH
Q 024734 5 GLAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHRSQI----PPL-TLPILSAFFLLG 78 (263)
Q Consensus 5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~g 78 (263)
.+.|.++-+.+.+.-+.+.+..|..+.. +=.-+.+.++..+.+.++.+|...+.+.-+. ++. ..+.|..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 3678888888999899999999975432 1124678889999999999998877654221 233 456666667777
Q ss_pred HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccC
Q 024734 79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKG 152 (263)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~ 152 (263)
++|+.-...-.+=+|-|+|-.=.+=...-..--.+++..+++|.-+.. .|-+-++...|...-+.-++
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHHH
Confidence 777322223344456665544333333444556788999999999999 88888888888876654333
No 92
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.68 E-value=1.7 Score=38.25 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=106.0
Q ss_pred CCCCh--HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhcc--ch
Q 024734 32 DGMSN--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN--LV 107 (263)
Q Consensus 32 ~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~--~~ 107 (263)
++..| |-+++.++++-..+-+.-.... +.+++..++|.. ..++.+-...+.+..-++.|.+=-.-.+.-. +.
T Consensus 69 ~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY---~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKli 144 (367)
T KOG1582|consen 69 EGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTY---VILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLI 144 (367)
T ss_pred ccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHh---hhhHhhhhhccccCcCccccccCcHHHHHHhhhhh
Confidence 34554 4677777766544333322111 222234556542 2233333444455555566654333333333 34
Q ss_pred HHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHH
Q 024734 108 PGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCV 187 (263)
Q Consensus 108 Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~ 187 (263)
|+ ++.+.+.-+.|-.+. +.++..+..+|..+.+..+.. .+.+.+..|....-.|-+
T Consensus 145 PV--miggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~----------------~sPNF~~~Gv~mIsgALl 200 (367)
T KOG1582|consen 145 PV--MIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ----------------TSPNFNLIGVMMISGALL 200 (367)
T ss_pred hh--hheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc----------------cCCCcceeeHHHHHHHHH
Confidence 54 566788888888888 999999999999887653221 122233568777777777
Q ss_pred HHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHccCCCcc
Q 024734 188 FTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMERDLSSW 235 (263)
Q Consensus 188 ~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 235 (263)
+=|.--.+|.|..+..+ +...+++++..+|.+..+......++-.+.|
T Consensus 201 ~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~ 249 (367)
T KOG1582|consen 201 ADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAW 249 (367)
T ss_pred HHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhh
Confidence 77777778888887755 2578888999999888877777666533334
No 93
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=82.72 E-value=7.1 Score=33.56 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=80.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHH
Q 024734 34 MSNLVFVFYSKAFASLVLLPASLLFHRSQIP----PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPG 109 (263)
Q Consensus 34 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv 109 (263)
..-++-.++..+++.++++.+....+..... ..+.......++.|+....-..+.-+.+.-++++.-+.+..+.-.
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKl 262 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKL 262 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhC
Confidence 4456788999999999999988876643221 222222234555566555555677788888999999999888888
Q ss_pred HHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 110 FTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 110 ~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
-..+.+.++++|+.++. ++..+.+++..-++
T Consensus 263 p~alaGlvffdap~nf~------si~sillGflsg~i 293 (309)
T COG5070 263 PIALAGLVFFDAPVNFL------SIFSILLGFLSGAI 293 (309)
T ss_pred hHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence 88999999999999999 99999998874444
No 94
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=69.48 E-value=43 Score=26.26 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 179 GLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 179 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
.++.+.+...-+.....+.++.++..++...++.....|.+....+..+.++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888899999999988887668999999999999998888877765
No 95
>PRK02237 hypothetical protein; Provisional
Probab=68.60 E-value=6.7 Score=29.55 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 106 LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 106 ~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
..-+...+..+.+-++|+++. .++|..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 344455566788888999999 99999999999988753
No 96
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=68.58 E-value=31 Score=25.91 Aligned_cols=51 Identities=10% Similarity=0.164 Sum_probs=33.1
Q ss_pred HhhhhcCchhhhhhccchHH-HHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 90 AGIYYSSPTLSTALLNLVPG-FTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 90 ~al~~~~~~~asil~~~~Pv-~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
+|.+.-+.++--+++=..-+ ....+++++++|+++++ ...|..+...++.+
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 34444455555555443333 33456888999999999 99988776666543
No 97
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=66.99 E-value=1e+02 Score=28.19 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=80.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHHHHHHHHHHHhccCC--C----CCCCHHHHHHHH
Q 024734 3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYS-KAFASLVLLPASLLFHRSQ--I----PPLTLPILSAFF 75 (263)
Q Consensus 3 ~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~~~--~----~~~~~~~~~~~~ 75 (263)
++...|+.+.+.+|+.-|...+..-..+.++=.+..+-=.| ..++.++-+.-.+..+..+ + ...++..|...+
T Consensus 179 ~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl 258 (345)
T KOG2234|consen 179 QNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVL 258 (345)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHH
Confidence 45678999999999998888877655554333333333333 2333333333333322111 1 112333332222
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 76 LLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
. ++..-.+.-.-++|.+--.=..-..+.-+++.+.++.+++.+++.. ..+|..+.+..+.+=
T Consensus 259 ~----~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~------F~lG~~lVi~Si~lY 320 (345)
T KOG2234|consen 259 L----NAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLY------FLLGALLVILSIFLY 320 (345)
T ss_pred H----HhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHH------HHHHHHHHHHHHHHh
Confidence 2 1333334445567776655555566778889999999999999999 999998888777653
No 98
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=65.43 E-value=6.3 Score=29.61 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 106 LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 106 ~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
..-+...+..+.+-++|+++. .++|..++++|+.++.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 445556677888889999999 99999999999998764
No 99
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=57.24 E-value=84 Score=25.63 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCchhHHHHHHHHHHHHHHHHH
Q 024734 173 TNWVFGGLLLAVDCVFTSAWFIVQASILKK-----FSAEFIVVFFYCFFVAIQSAIL 224 (263)
Q Consensus 173 ~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~-----~~~~~~~~~~~~~~~~i~~~~~ 224 (263)
.+..-.....+.++++|++..++...+.+| .|.|..-.....+.+++.++.+
T Consensus 128 ~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaF 184 (193)
T COG4657 128 HNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAF 184 (193)
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHH
Confidence 345556788889999999988887665554 3434444445455554444433
No 100
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=55.87 E-value=15 Score=32.68 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=41.3
Q ss_pred cCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 95 SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 95 ~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
+++-+.+++..+=-.+..++|...+++++++. +|+|.++.|.|.++-+
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 45555667777888899999999999999999 9999999999998765
No 101
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=54.07 E-value=9.9 Score=34.09 Aligned_cols=130 Identities=10% Similarity=0.033 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHH-h---cc--CCCC-------CCCHHHHHHHHHHH
Q 024734 12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLL-F---HR--SQIP-------PLTLPILSAFFLLG 78 (263)
Q Consensus 12 ~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~-~---~~--~~~~-------~~~~~~~~~~~~~g 78 (263)
|+++.++||+.....|++.+++--| +...+-+.++.++...+.-+ . ++ ...| +-+++.+...+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 3567899999999999986543322 22333333333322222211 1 11 1111 22343333334445
Q ss_pred HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734 79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI 146 (263)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (263)
++--+++.+..+++...+.+.+-.+....-+..-+.--.++.+|.++..+ -+.|+.+..+.+++
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~i----LF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEI----LFPGVACFLIAIIL 143 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceE----EEccHHHHHHHHHH
Confidence 55467888889999998888777665433332222222344566664411 34466555555544
No 102
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=49.17 E-value=24 Score=28.04 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=25.7
Q ss_pred hhhhcCchhhhhhccchHHHHHHHHHHHhhhccccc
Q 024734 91 GIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126 (263)
Q Consensus 91 al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~ 126 (263)
++..-+.-.++.+.|+.|+++++++.++. +++...
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La-~~L~~~ 102 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILA-QYLFFS 102 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 45556677788999999999999887763 444444
No 103
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=46.79 E-value=39 Score=30.22 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred HHHHH-HHHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734 82 TSSQF-FGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT 148 (263)
Q Consensus 82 ~~~~~-~~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 148 (263)
...|. +...|+++-+++....+.+ ..-..+.+-+.++++|--+..-+.-.....|+.+.+.|+.++.
T Consensus 223 ~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 223 AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 44444 4446999999998887766 5666777778999997544331111114567777788888775
No 104
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=46.70 E-value=30 Score=30.51 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHH-HHHHHHHH-HH
Q 024734 6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSA-FFLLGFLG-TS 83 (263)
Q Consensus 6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~ 83 (263)
.+|=.+++.++.+++.+...=...... .|..++...-.++++++-..- ...+++....++|. +.. ..+...+. ++
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~-~~i~~yl~f~L~MFl 241 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWD-SAIFLYLRFALTMFL 241 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeeh-HHHHHHHHHHHHHHH
Confidence 345555666777787777766665554 888888888888888877665 34445444444442 221 22222232 44
Q ss_pred HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
.+.+.-.-++..+++.-.+=.-+.-.+..++ ..++-+.+|. -.++.+....|..+-
T Consensus 242 lYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 242 LYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 4444445455556554444444555666655 3344558888 888888888887654
No 105
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=43.06 E-value=28 Score=27.96 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=21.4
Q ss_pred hhhhcCchhhhhhccchHHHHHHHHHHHh
Q 024734 91 GIYYSSPTLSTALLNLVPGFTFILAIIFR 119 (263)
Q Consensus 91 al~~~~~~~asil~~~~Pv~~~ll~~~~~ 119 (263)
++..-+.-.++.+.|..|++.++.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566788889999999888876654
No 106
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=42.32 E-value=17 Score=27.24 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 107 VPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 107 ~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
.-.......+.+=+.|+++. .++|.+++++|+.++.+
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 34445556677778888988 99999999999887764
No 107
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=39.66 E-value=2.1e+02 Score=23.30 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=18.8
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734 195 VQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMER 230 (263)
Q Consensus 195 ~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 230 (263)
..||..+|.+ -.....+......+..+...+..++
T Consensus 120 ~~~~~~~R~~-~i~ag~~v~l~~~~~~l~~~l~~~~ 154 (194)
T PF07698_consen 120 SVRRIRSRSD-IIKAGLLVGLVNALMILALGLIQGS 154 (194)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555543 4555555666666555555555443
No 108
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.37 E-value=2.1e+02 Score=22.96 Aligned_cols=55 Identities=7% Similarity=0.097 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734 177 FGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERD 231 (263)
Q Consensus 177 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 231 (263)
+..+..+++.++-...+-.+.++.+..++|..........|.+.++.+.+..+++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~ 59 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH 59 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4577888888888998888888888877688888889999998888888776554
No 109
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=37.25 E-value=1.2e+02 Score=19.81 Aligned_cols=46 Identities=17% Similarity=0.437 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734 133 KSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF 203 (263)
Q Consensus 133 ~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 203 (263)
..+|..+.++|++++.. ++| |.+..+++-..++.+....|+..+..
T Consensus 5 ~v~G~~lv~~Gii~~~l-PGp------------------------G~l~i~~GL~iLa~ef~wArr~l~~~ 50 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PGP------------------------GLLVIFLGLAILATEFPWARRLLRRL 50 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CCC------------------------cHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 67899999999977542 221 55667777777888888888777653
No 110
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=31.88 E-value=1.5e+02 Score=25.95 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CChHHHHHHH----HHHHHHHHHHHHHHhcc
Q 024734 3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDG-------MSNLVFVFYS----KAFASLVLLPASLLFHR 60 (263)
Q Consensus 3 ~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~-------~~p~~~~~~R----~~~a~l~l~~~~~~~~~ 60 (263)
++|..+....+.+.+++|+++.=.+...++. -++.+.++-. ++.+.+.++.++.+++.
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn 247 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRN 247 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcC
Confidence 4678899999999999999999998887652 2344444333 44555566666655433
No 111
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=31.42 E-value=1.1e+02 Score=18.22 Aligned_cols=19 Identities=5% Similarity=-0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024734 178 GGLLLAVDCVFTSAWFIVQ 196 (263)
Q Consensus 178 G~ll~l~aa~~~a~~~v~~ 196 (263)
=.++.++.+.+|++|++..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3678889999999999864
No 112
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.21 E-value=21 Score=31.77 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-hhhcCchhhhhhccchHHHH-HHHHHHHhhhcc
Q 024734 82 TSSQFFGYAG-IYYSSPTLSTALLNLVPGFT-FILAIIFRVEKL 123 (263)
Q Consensus 82 ~~~~~~~~~a-l~~~~~~~asil~~~~Pv~~-~ll~~~~~~e~~ 123 (263)
..+-.+||+= ++-.+-+...++.+..-+.+ +++-+.++|+|+
T Consensus 33 l~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 33 LVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444443 33334433444444333333 333444455554
No 113
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.19 E-value=64 Score=24.95 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=20.0
Q ss_pred hhcCchhhhhhccchHHHHHHHHHHHh
Q 024734 93 YYSSPTLSTALLNLVPGFTFILAIIFR 119 (263)
Q Consensus 93 ~~~~~~~asil~~~~Pv~~~ll~~~~~ 119 (263)
...+...++.+.|..|++.++++..+.
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555678888999998888876664
No 114
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=27.03 E-value=1.5e+02 Score=17.75 Aligned_cols=20 Identities=20% Similarity=-0.079 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024734 178 GGLLLAVDCVFTSAWFIVQA 197 (263)
Q Consensus 178 G~ll~l~aa~~~a~~~v~~k 197 (263)
=.+..++.+.+|++|++...
T Consensus 7 iVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 7 IVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35678888999999998743
No 115
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.93 E-value=2.8e+02 Score=20.64 Aligned_cols=30 Identities=10% Similarity=0.411 Sum_probs=23.8
Q ss_pred HHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 112 FILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 112 ~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
..+|.+.++|++++. .+.|..+...|+.++
T Consensus 84 v~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 345888999999999 888887777776654
No 116
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=23.17 E-value=3.7e+02 Score=21.10 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024734 174 NWVFGGLLLAVDCVFTSAWFIVQASILK 201 (263)
Q Consensus 174 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~ 201 (263)
+..-+.+-.+.++..|.-|...+||..+
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 3445778899999999999999888654
No 117
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.52 E-value=2.9e+02 Score=23.00 Aligned_cols=58 Identities=3% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 024734 2 GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60 (263)
Q Consensus 2 ~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~ 60 (263)
+.+.++..+..+++.++|-..+..... .+..++|..=...-.++|++.+..-.++++|
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~-lp~~inp~l~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSF-LPPVINPVLPPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-ccccCCcCCCHHHHHHHHHHHHHHHHHHHHH
No 118
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.94 E-value=6.9e+02 Score=25.56 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=25.7
Q ss_pred hhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHH
Q 024734 98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF 145 (263)
Q Consensus 98 ~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 145 (263)
+++.++..+.|.-.+.++.....+|.+.+ .+.+.+-.++|.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~------~~~~~~~~~~G~~ 52 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDK------AFFSALGVLLGAI 52 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccch------HHHHHHHHHHHHH
Confidence 56677778888888777777666664333 3444444444543
No 119
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=20.32 E-value=2.2e+02 Score=17.42 Aligned_cols=19 Identities=11% Similarity=-0.186 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024734 178 GGLLLAVDCVFTSAWFIVQ 196 (263)
Q Consensus 178 G~ll~l~aa~~~a~~~v~~ 196 (263)
=.++.++.+.+|+++++..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 3677888999999999863
Done!