Query 024734
Match_columns 263
No_of_seqs 129 out of 1287
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 7.9E-07 2.7E-11 66.7 11.7 68 76-149 34-103 (110)
2 2i68_A Protein EMRE; transmemb 98.5 1.9E-07 6.4E-12 72.9 6.5 68 76-149 34-103 (137)
3 2i68_A Protein EMRE; transmemb 7.1 7.2E+02 0.025 18.1 7.3 47 184-231 35-82 (137)
4 2gfp_A EMRD, multidrug resista 6.4 1E+03 0.035 19.3 9.8 48 96-147 33-82 (375)
5 2hac_A T-cell surface glycopro 6.1 3.7E+02 0.013 14.9 2.0 16 111-126 16-31 (33)
6 3b5d_A Multidrug transporter E 4.8 8.7E+02 0.03 16.6 7.0 48 183-231 34-82 (110)
7 3arc_T Photosystem II reaction 4.0 5.4E+02 0.018 14.1 1.8 14 113-126 17-30 (32)
8 1rh5_C Secbeta; protein transl 3.6 6.1E+02 0.021 15.5 2.0 16 133-148 32-47 (53)
9 2jo1_A Phospholemman; FXYD1, N 3.1 7.3E+02 0.025 16.2 2.1 15 134-148 22-36 (72)
10 2jp3_A FXYD domain-containing 3.1 7.4E+02 0.025 16.0 2.1 15 134-148 23-37 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.58 E-value=7.9e-07 Score=66.67 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=61.8
Q ss_pred HHHHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 76 ~~g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
..+++. .+++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++ |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 355556 7888999999999999999888 79999999999999999999999 99999999999988763
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.50 E-value=1.9e-07 Score=72.86 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=51.8
Q ss_pred HHHHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734 76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY 149 (263)
Q Consensus 76 ~~g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 149 (263)
..+++. .+++.++..++++.|++.+..+ .++.|+++.++++++++|+++++ +++|+.+.++|+.++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 456666 8899999999999999999988 89999999999999999999999 99999999999998864
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=7.07 E-value=7.2e+02 Score=18.12 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH-HHHccC
Q 024734 184 VDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILC-LVMERD 231 (263)
Q Consensus 184 ~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~ 231 (263)
++.++++++..+..+..++.|.......|.. .+.+....++ ++++++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~-l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSG-VGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHH-HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 4444555555555555666652233333333 3333333333 344544
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=6.44 E-value=1e+03 Score=19.25 Aligned_cols=48 Identities=6% Similarity=0.107 Sum_probs=25.4
Q ss_pred CchhhhhhccchHHHHHHHHHHH--hhhcccccccCccchhhHHHHHHHHHHHh
Q 024734 96 SPTLSTALLNLVPGFTFILAIIF--RVEKLDWRSSSSLAKSVGTIVLITGAFIM 147 (263)
Q Consensus 96 ~~~~asil~~~~Pv~~~ll~~~~--~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 147 (263)
+..+.+.+.....+...+.+.+. +.||.++|+. -..+..+..++..+.
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~----~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV----ILVGMSIFMLATLVA 82 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC----CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHH
Confidence 45555556555555555554333 4588887733 344444444454443
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.11 E-value=3.7e+02 Score=14.90 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhccccc
Q 024734 111 TFILAIIFRVEKLDWR 126 (263)
Q Consensus 111 ~~ll~~~~~~e~~~~~ 126 (263)
.+++..++.+||+.+.
T Consensus 16 gii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 16 GVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4455666777777654
No 6
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=4.84 E-value=8.7e+02 Score=16.64 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH-HHHccC
Q 024734 183 AVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILC-LVMERD 231 (263)
Q Consensus 183 l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~ 231 (263)
+++.++++.+..+..+..++.|.......|.. .+.+.....+ ++++++
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g-~~~v~~~l~~~~~~~E~ 82 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSG-VGIVLISLLSWGFFGQR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhh-HHHHHHHHHHHHHhCCC
Confidence 34455566655555556666652233333332 3333333443 344444
No 7
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.00 E-value=5.4e+02 Score=14.12 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=8.2
Q ss_pred HHHHHHhhhccccc
Q 024734 113 ILAIIFRVEKLDWR 126 (263)
Q Consensus 113 ll~~~~~~e~~~~~ 126 (263)
++-.++++|++...
T Consensus 17 iFFAI~FRePPri~ 30 (32)
T 3arc_T 17 FFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHTSCCCCCC
T ss_pred HHHhhhhcCCCCCC
Confidence 34455677777543
No 8
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=3.58 E-value=6.1e+02 Score=15.50 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHhh
Q 024734 133 KSVGTIVLITGAFIMT 148 (263)
Q Consensus 133 ~~~g~~l~~~Gv~li~ 148 (263)
..+++.++++..+++.
T Consensus 32 ~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 32 HVIGVTVAFVIIEAIL 47 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehhhhHHHHHHHHHHH
Confidence 7788877777776654
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=3.13 E-value=7.3e+02 Score=16.24 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHhh
Q 024734 134 SVGTIVLITGAFIMT 148 (263)
Q Consensus 134 ~~g~~l~~~Gv~li~ 148 (263)
+.+.++.+.|++++.
T Consensus 22 ifA~vLfi~GI~iil 36 (72)
T 2jo1_A 22 VIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566677887765
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.11 E-value=7.4e+02 Score=16.01 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhh
Q 024734 134 SVGTIVLITGAFIMT 148 (263)
Q Consensus 134 ~~g~~l~~~Gv~li~ 148 (263)
+.+.++.+.|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Done!