Query 024734
Match_columns 263
No_of_seqs 129 out of 1287
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 13:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024734.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024734hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 10.6 1E+02 0.0073 14.7 2.9 18 177-194 3-20 (27)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.0 4.8E+02 0.035 14.6 3.8 13 219-231 20-32 (57)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 2.5 4.7E+02 0.034 13.3 4.4 20 174-193 16-35 (37)
4 d2p7tc1 f.14.1.1 (C:86-119) Po 2.1 5.1E+02 0.037 12.6 1.8 10 112-121 24-33 (34)
5 d1q90a3 f.23.23.1 (A:248-292) 1.9 6.6E+02 0.048 13.4 3.3 29 175-203 4-32 (45)
6 d1gl4a1 d.22.1.2 (A:399-631) D 1.5 4.7E+02 0.034 19.3 1.2 36 90-126 43-78 (233)
7 d1fftc_ f.25.1.1 (C:) Cytochro 1.4 1E+03 0.073 15.9 3.0 28 2-29 73-100 (185)
8 d2e74h1 f.23.27.1 (H:3-29) Pet 1.2 7.2E+02 0.053 11.3 1.2 9 15-23 11-19 (27)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 1.1 1.7E+03 0.13 15.1 4.3 11 67-77 123-133 (225)
10 d2ot2a1 b.40.14.1 (A:1-90) Hyd 1.0 4.7E+02 0.034 16.2 0.0 6 258-263 47-52 (90)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.58 E-value=1e+02 Score=14.68 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024734 177 FGGLLLAVDCVFTSAWFI 194 (263)
Q Consensus 177 ~G~ll~l~aa~~~a~~~v 194 (263)
+|.+..-++.+.|+.|--
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577778888888887753
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.01 E-value=4.8e+02 Score=14.58 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=6.2
Q ss_pred HHHHHHHHHHccC
Q 024734 219 IQSAILCLVMERD 231 (263)
Q Consensus 219 i~~~~~~~~~~~~ 231 (263)
+.+....++.|++
T Consensus 20 ~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 20 LAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC
Confidence 3333444555653
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.50 E-value=4.7e+02 Score=13.25 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 024734 174 NWVFGGLLLAVDCVFTSAWF 193 (263)
Q Consensus 174 ~~~~G~ll~l~aa~~~a~~~ 193 (263)
...+|.++.+.-++.++.|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45679888888888777664
No 4
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.06 E-value=5.1e+02 Score=12.57 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=4.3
Q ss_pred HHHHHHHhhh
Q 024734 112 FILAIIFRVE 121 (263)
Q Consensus 112 ~ll~~~~~~e 121 (263)
++..|+..+|
T Consensus 24 a~atwfvgre 33 (34)
T d2p7tc1 24 ALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 3334444444
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.90 E-value=6.6e+02 Score=13.37 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734 175 WVFGGLLLAVDCVFTSAWFIVQASILKKF 203 (263)
Q Consensus 175 ~~~G~ll~l~aa~~~a~~~v~~k~~~~~~ 203 (263)
...|.+..+++...--+..++-||--+++
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665556666656655544
No 6
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.49 E-value=4.7e+02 Score=19.34 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=28.5
Q ss_pred HhhhhcCchhhhhhccchHHHHHHHHHHHhhhccccc
Q 024734 90 AGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126 (263)
Q Consensus 90 ~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~ 126 (263)
-+++.+|+..+..+..+.|+.. .++|+|-+|.....
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 3567788888888888888855 57899988887765
No 7
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=1.39 E-value=1e+03 Score=15.94 Aligned_cols=28 Identities=11% Similarity=-0.091 Sum_probs=15.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 024734 2 GKVGLAPVIGMMMAECAHVGLMFAGKAA 29 (263)
Q Consensus 2 ~~~~~~~~l~~l~a~~~wg~~~~~~k~~ 29 (263)
|+++.+.....+..+.+-|..+...|..
T Consensus 73 ~~~~~~~~~~~L~~t~~lG~~Fl~~q~~ 100 (185)
T d1fftc_ 73 YKNNKSQVISWLALTWLFGAGFIGMEIY 100 (185)
T ss_dssp TTCCGGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555567777776654
No 8
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.23 E-value=7.2e+02 Score=11.32 Aligned_cols=9 Identities=11% Similarity=-0.189 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 024734 15 AECAHVGLM 23 (263)
Q Consensus 15 a~~~wg~~~ 23 (263)
..+-|+...
T Consensus 11 vvftwsiam 19 (27)
T d2e74h1 11 VVFTWSIAM 19 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHhhheeee
Confidence 344455543
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=1.08 E-value=1.7e+03 Score=15.07 Aligned_cols=11 Identities=27% Similarity=0.054 Sum_probs=5.1
Q ss_pred CHHHHHHHHHH
Q 024734 67 TLPILSAFFLL 77 (263)
Q Consensus 67 ~~~~~~~~~~~ 77 (263)
++.|+..+..+
T Consensus 123 ~~~d~~~L~ll 133 (225)
T d1y5ic1 123 TGADILILSLL 133 (225)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 45555444333
No 10
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=1.04 E-value=4.7e+02 Score=16.18 Aligned_cols=6 Identities=50% Similarity=0.435 Sum_probs=0.0
Q ss_pred cccccC
Q 024734 258 NVCVHA 263 (263)
Q Consensus 258 ~~~~~~ 263 (263)
|+++|+
T Consensus 47 yVLVH~ 52 (90)
T d2ot2a1 47 WVLVHV 52 (90)
T ss_dssp EEEEET
T ss_pred EEEEeh
Done!