BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024735
MLLSLSQAAVPTARNCSINLKLSSSNPPLTSDSHKKSKFIVKTIHPRRRALSLTLAKADG
SVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDFSSRINKWGRVALLAGG
DVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAV
VAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKK
NDVYRRGNPFELFELLTSLVRRW

High Scoring Gene Products

Symbol, full name Information P value
AT1G44920 protein from Arabidopsis thaliana 3.3e-70

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024735
        (263 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2028235 - symbol:AT1G44920 "AT1G44920" species...   711  3.3e-70   1


>TAIR|locus:2028235 [details] [associations]
            symbol:AT1G44920 "AT1G44920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA]
            EMBL:CP002684 GO:GO:0009507 EMBL:AC020576 UniGene:At.14888
            UniGene:At.28268 EMBL:AF370316 EMBL:AY063101 IPI:IPI00536740
            RefSeq:NP_564492.1 UniGene:At.70826 STRING:Q9LPD7 PaxDb:Q9LPD7
            PRIDE:Q9LPD7 EnsemblPlants:AT1G44920.1 GeneID:841058
            KEGG:ath:AT1G44920 TAIR:At1g44920 eggNOG:NOG253471
            InParanoid:Q9LPD7 OMA:PTPFILV PhylomeDB:Q9LPD7
            ProtClustDB:CLSN2688475 ArrayExpress:Q9LPD7 Genevestigator:Q9LPD7
            InterPro:IPR021414 Pfam:PF11255 Uniprot:Q9LPD7
        Length = 258

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 142/221 (64%), Positives = 163/221 (73%)

Query:    45 HPRRRALSLTLAKADGSVDSNNSAAATSNLTSRSFQDETVSVGQGNVPLEGVIQFEKPDF 104
             H  R  + L L+  DGSV+S  S +A S + S    DETV VGQ NVPLEGVIQF+KP  
Sbjct:    41 HRSRPRVVLALSNPDGSVNSKPSTSA-SQIPSSG--DETVFVGQDNVPLEGVIQFDKPSS 97

Query:   105 --SSRINKWGRXXXXXXXXXXXXXXFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYF 162
               SS I KWGR              FSAIGRF+HGF VF  DTL TADPFIAGWFLSAYF
Sbjct:    98 TSSSNITKWGRVALLAGGDVLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYF 157

Query:   163 LGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLL 222
             LGGYA++GRGM G SKAVVAA KSW  G PLG+IIR+ +SGH+P Y+F+LVTMG+TAVLL
Sbjct:   158 LGGYAEEGRGMKGKSKAVVAAAKSWIVGTPLGIIIRSASSGHIPAYSFVLVTMGSTAVLL 217

Query:   223 IGWRALLFSFLPDDKSKKNDVYRRGNPFELFELLTSLVRRW 263
             IGWRALLFS LP +  KK+D YR+G+ FELFELLTSL+RRW
Sbjct:   218 IGWRALLFSVLPTESKKKDDTYRKGSAFELFELLTSLIRRW 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       249   0.00080  114 3  11 22  0.42    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.91u 0.12s 20.03t   Elapsed:  00:00:01
  Total cpu time:  19.91u 0.12s 20.03t   Elapsed:  00:00:01
  Start:  Fri May 10 22:12:39 2013   End:  Fri May 10 22:12:40 2013

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