BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024735
         (263 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7CQV4|GSID_SALTY Glutathione transport system permease protein GsiD OS=Salmonella
           typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
           GN=gsiD PE=3 SV=1
          Length = 303

 Score = 34.3 bits (77), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 113 RVALLAGGDVLALLLFSAIGRFNHGF---SVFDFDTLRTADPFIAGWFLSAYFLGGYADD 169
            VAL+AGG VLAL+L +   R+   +   + FD+D+L    P +  WF           D
Sbjct: 38  HVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNG-PSLQHWF---------GVD 87

Query: 170 GRGMNGLSKAVVAATKSWAAGV 191
             G +  S+ +V A  S AAGV
Sbjct: 88  SLGRDIFSRVLVGAQISLAAGV 109


>sp|Q8XF88|GSID_SALTI Glutathione transport system permease protein GsiD OS=Salmonella
           typhi GN=gsiD PE=3 SV=1
          Length = 303

 Score = 34.3 bits (77), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 113 RVALLAGGDVLALLLFSAIGRFNHGF---SVFDFDTLRTADPFIAGWFLSAYFLGGYADD 169
            VAL+AGG VLAL+L +   R+   +   + FD+D+L    P +  WF           D
Sbjct: 38  HVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNG-PSLQHWF---------GVD 87

Query: 170 GRGMNGLSKAVVAATKSWAAGV 191
             G +  S+ +V A  S AAGV
Sbjct: 88  SLGRDIFSRVLVGAQISLAAGV 109


>sp|Q5PGP6|GSID_SALPA Glutathione transport system permease protein GsiD OS=Salmonella
           paratyphi A (strain ATCC 9150 / SARB42) GN=gsiD PE=3
           SV=1
          Length = 303

 Score = 34.3 bits (77), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 113 RVALLAGGDVLALLLFSAIGRFNHGF---SVFDFDTLRTADPFIAGWFLSAYFLGGYADD 169
            VAL+AGG VLAL+L +   R+   +   + FD+D+L    P +  WF           D
Sbjct: 38  HVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNG-PSLQHWF---------GVD 87

Query: 170 GRGMNGLSKAVVAATKSWAAGV 191
             G +  S+ +V A  S AAGV
Sbjct: 88  SLGRDIFSRVLVGAQISLAAGV 109


>sp|Q57RA9|GSID_SALCH Glutathione transport system permease protein GsiD OS=Salmonella
           choleraesuis (strain SC-B67) GN=gsiD PE=3 SV=1
          Length = 303

 Score = 34.3 bits (77), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 13/82 (15%)

Query: 113 RVALLAGGDVLALLLFSAIGRFNHGF---SVFDFDTLRTADPFIAGWFLSAYFLGGYADD 169
            VAL+AGG VLAL+L +   R+   +   + FD+D+L    P +  WF           D
Sbjct: 38  HVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNG-PSLQHWF---------GVD 87

Query: 170 GRGMNGLSKAVVAATKSWAAGV 191
             G +  S+ +V A  S AAGV
Sbjct: 88  SLGRDIFSRVLVGAQISLAAGV 109


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,325,987
Number of Sequences: 539616
Number of extensions: 3729376
Number of successful extensions: 9060
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9059
Number of HSP's gapped (non-prelim): 11
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)