Query 024735
Match_columns 263
No_of_seqs 118 out of 184
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11255 DUF3054: Protein of u 100.0 2.8E-32 6.1E-37 221.8 11.9 111 118-230 2-112 (112)
2 PRK10124 putative UDP-glucose 92.9 1.5 3.4E-05 43.2 11.9 115 115-233 18-133 (463)
3 TIGR03023 WcaJ_sugtrans Undeca 91.5 2.4 5.1E-05 41.0 11.1 79 154-233 39-118 (451)
4 TIGR03025 EPS_sugtrans exopoly 88.9 5.2 0.00011 38.6 11.1 78 155-234 39-116 (445)
5 TIGR03022 WbaP_sugtrans Undeca 87.1 14 0.0003 35.8 12.7 80 150-233 37-118 (456)
6 TIGR03013 EpsB_2 sugar transfe 80.3 20 0.00043 34.9 10.7 80 152-234 39-119 (442)
7 PF13727 CoA_binding_3: CoA-bi 58.8 5.2 0.00011 32.1 1.3 84 162-248 2-85 (175)
8 COG2245 Predicted membrane pro 42.2 68 0.0015 29.1 5.7 60 107-166 53-118 (182)
9 PF06532 DUF1109: Protein of u 41.6 1.8E+02 0.0039 25.8 8.3 73 121-194 25-101 (204)
10 PRK15204 undecaprenyl-phosphat 36.8 4.4E+02 0.0096 26.3 12.4 27 208-234 114-140 (476)
11 PF07301 DUF1453: Protein of u 33.4 3.1E+02 0.0067 24.0 8.2 96 127-229 39-141 (148)
12 PF13194 DUF4010: Domain of un 30.7 91 0.002 28.1 4.7 40 209-255 89-128 (211)
13 PF15176 LRR19-TM: Leucine-ric 27.9 40 0.00086 28.0 1.8 18 147-164 14-31 (102)
14 COG1086 Predicted nucleoside-d 27.2 4.2E+02 0.0092 28.1 9.3 109 118-236 3-111 (588)
15 PRK13702 replication protein; 26.2 33 0.00072 27.6 1.0 17 238-254 12-28 (85)
16 PF04911 ATP-synt_J: ATP synth 24.0 78 0.0017 23.6 2.5 21 144-164 5-25 (54)
17 COG1585 Membrane protein impli 23.0 1.1E+02 0.0023 26.1 3.6 48 186-236 28-77 (140)
18 PRK10726 hypothetical protein; 21.6 1.8E+02 0.004 24.3 4.5 17 189-205 64-80 (105)
No 1
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=99.98 E-value=2.8e-32 Score=221.83 Aligned_cols=111 Identities=43% Similarity=0.751 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcchhhHHhhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHH
Q 024735 118 AGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLII 197 (263)
Q Consensus 118 A~gDvvaVllFA~IGR~SHg~~~~~~gvl~TAwPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~L 197 (263)
+++|++++++|+++||.|||++.++.++++|+|||++||+++|++.+.|+++..++ .++.++.++++|++|+++||+|
T Consensus 2 ~~~D~vav~~Fa~iGr~sHg~~~~~~~~l~Ta~PFl~Gw~~~~~~~~~~~~~~~~~--~~~~~~~g~~~W~~a~~vG~~L 79 (112)
T PF11255_consen 2 AVGDVVAVLLFALIGRISHGEALSPAGVLRTAWPFLVGWLLGWPLLGAYRRDARGS--PGRAWPTGVVVWLVAVPVGMAL 79 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998889999999999999999999999999987655 3677888889999999999999
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 024735 198 RAVTSGHLPPYTFILVTMGTTAVLLIGWRALLF 230 (263)
Q Consensus 198 R~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a 230 (263)
|++..|+.++++|++|++++++++|+|||++++
T Consensus 80 R~~~~~~~~~~~FiiVa~~~~~vlL~gWR~~~a 112 (112)
T PF11255_consen 80 RALLFGGGPAWSFIIVALVFLAVLLLGWRAVAA 112 (112)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence 999767777899999999999999999999874
No 2
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=92.90 E-value=1.5 Score=43.16 Aligned_cols=115 Identities=12% Similarity=0.010 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcchhhHHhhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHH
Q 024735 115 ALLAGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLG 194 (263)
Q Consensus 115 ~LlA~gDvvaVllFA~IGR~SHg~~~~~~gvl~TAwPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vG 194 (263)
.++...|++++++-.++.-.-+........+ .....+++-+.+...+.+.|+.- +.. .....+...+.+|+.+..+.
T Consensus 18 ~~~~l~Dl~ii~ls~~la~~lr~~~~~~~~~-~~~ll~~vv~~~~~~~~glY~~w-r~~-~~~~el~rI~~a~~la~lil 94 (463)
T PRK10124 18 MVQRFSDITIMFAGLWLVCEVSGLSFLYMHL-LVALITLVVFQMLGGITDFYRSW-RGV-KASTELALLLQNWTLSLIFS 94 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHhcccCchh-hhc-cHHHHHHHHHHHHHHHHHHH
Confidence 4567799888866555544333322211111 11222222222222445667531 111 11123334445677766665
Q ss_pred HHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 024735 195 LIIRAVTSG-HLPPYTFILVTMGTTAVLLIGWRALLFSFL 233 (263)
Q Consensus 195 l~LR~l~~G-g~p~~sFvlVA~~~laVlLlGWRal~a~v~ 233 (263)
+++=.+... ..+ .++++...+++.+++.++|.++..+.
T Consensus 95 ~~l~~~~~~~~~s-R~v~l~~~ll~~vll~~~R~~~R~~~ 133 (463)
T PRK10124 95 AGLVAFNNDFDTQ-LKIWLAWYLLTSIGLVVCRSCIRIGA 133 (463)
T ss_pred HHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433322 223 45666666777788889998777543
No 3
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=91.52 E-value=2.4 Score=40.99 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 024735 154 AGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTS-GHLPPYTFILVTMGTTAVLLIGWRALLFSF 232 (263)
Q Consensus 154 ~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~-Gg~p~~sFvlVA~~~laVlLlGWRal~a~v 232 (263)
+-|++...+.+.|+..-+.. ...+.+...+.+|+.+.++-+++=.+.. +..-+-+|+++...+..+++.+||.++..+
T Consensus 39 ~~~l~~~~~~glY~~~~~~~-~~~e~l~~i~~a~~l~~l~~~~~~~l~~~~~~~sR~~~~~~~~l~~~ll~~~R~~~r~~ 117 (451)
T TIGR03023 39 LLFLLIFALFGLYRSWRRRS-RLREMLLRILLAWTLTFLILALLAFLLKTGGEFSRLWLLLWFLLALALLLLGRLILRLL 117 (451)
T ss_pred HHHHHHHHHcCCccchhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556778886532211 1233243444566666655555544443 222235788888888999999999888765
Q ss_pred c
Q 024735 233 L 233 (263)
Q Consensus 233 ~ 233 (263)
.
T Consensus 118 ~ 118 (451)
T TIGR03023 118 L 118 (451)
T ss_pred H
Confidence 4
No 4
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=88.93 E-value=5.2 Score=38.57 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 024735 155 GWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLP 234 (263)
Q Consensus 155 GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a~v~~ 234 (263)
-+++...+.+.|+...+.. ....+...+.+|+.+..+-+++=.+..+....-+++++...+..+++.+||.++..+..
T Consensus 39 ~~l~~~~~~glY~~~~r~~--~~~el~ri~~a~~l~~l~~~~~~~~~~~~~~sR~~l~~~~~l~~~ll~~~R~~~r~~~~ 116 (445)
T TIGR03025 39 LFLILFAASGLYRSWRGRS--FLEELARVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFLLALVLLLLWRLLLRRLLR 116 (445)
T ss_pred HHHHHHHHcCcccchhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556678886532221 12233333445555554445444444322222577888888889999999998887654
No 5
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=87.05 E-value=14 Score=35.82 Aligned_cols=80 Identities=18% Similarity=-0.003 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcC--CCCCchhHHHHHHHHHHHHHHHHH
Q 024735 150 DPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSG--HLPPYTFILVTMGTTAVLLIGWRA 227 (263)
Q Consensus 150 wPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~G--g~p~~sFvlVA~~~laVlLlGWRa 227 (263)
.++++-|++...+.+.|+.. ... ..+.+...+.+|+.+.++-+++=.+... ..+ -+++++..+...+++.+||.
T Consensus 37 ~~~~~~~~~~~~~~glY~~~-~~~--~~~el~ri~~a~~l~~~~~~~~~~~~~~~~~~s-r~~~~~~~~l~~~~l~~~R~ 112 (456)
T TIGR03022 37 LPVGLFFVAYRAHYGLYPGT-GMS--PWEELRRLTLATFALFLFILALAFFTKVSEPYS-RLVFLLAWGLALVLVPLARI 112 (456)
T ss_pred HHHHHHHHHHHHhcCcCCcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566778542 111 1223333445566555444443333332 223 46777788888899999998
Q ss_pred HHHHhc
Q 024735 228 LLFSFL 233 (263)
Q Consensus 228 l~a~v~ 233 (263)
++....
T Consensus 113 ~~r~~~ 118 (456)
T TIGR03022 113 LVRKLL 118 (456)
T ss_pred HHHHHH
Confidence 887654
No 6
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=80.25 E-value=20 Score=34.91 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHH
Q 024735 152 FIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSG-HLPPYTFILVTMGTTAVLLIGWRALLF 230 (263)
Q Consensus 152 FL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~G-g~p~~sFvlVA~~~laVlLlGWRal~a 230 (263)
+++-+++...+.+.|+...+.. ..+.+......|+.+..+-+++=.+..+ ..+ -++++...++..+++.+||.++.
T Consensus 39 ~~~~~ll~f~~~glY~~~~~~~--~~~~l~ri~~a~~~~~l~l~~l~~l~~~~~~s-R~vl~l~~ll~~~ll~~~R~~~R 115 (442)
T TIGR03013 39 FALVVIISAIALGLYNVDLRED--FRGIIARLAISLLVSFLALSFIFYFYPEFYLG-RGLLALAIVLAGSLVLLSRLFFL 115 (442)
T ss_pred HHHHHHHHHHHcCcCcchhccc--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667778886543321 1222333334555444333333222222 233 57777888888999999999887
Q ss_pred Hhcc
Q 024735 231 SFLP 234 (263)
Q Consensus 231 ~v~~ 234 (263)
.+..
T Consensus 116 ~~~~ 119 (442)
T TIGR03013 116 KILG 119 (442)
T ss_pred HHHH
Confidence 6654
No 7
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=58.84 E-value=5.2 Score=32.12 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=2.2
Q ss_pred HhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 024735 162 FLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKN 241 (263)
Q Consensus 162 L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a~v~~~~~~~~~ 241 (263)
+.|.|+.....+ ....+.....+|+.+..+-.++=...++..+ -.|++.-.++..+++..||.++.....+-.+++.
T Consensus 2 ~~glY~~~~~~~--~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~s-r~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~ 78 (175)
T PF13727_consen 2 AFGLYRSWRRRS--FLRELRRILIAWLIAFLLLVLILFFLKDAFS-RSFLLIFFLLSILLLILSRLLLRRYLRRYRRSGR 78 (175)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred CCCCCchHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456676522211 1122333345566655544444444444344 3566666677778888899998765544333232
Q ss_pred ccccCCC
Q 024735 242 DVYRRGN 248 (263)
Q Consensus 242 ~~~r~g~ 248 (263)
...+.|.
T Consensus 79 ~~~~v~~ 85 (175)
T PF13727_consen 79 NVLIVGA 85 (175)
T ss_dssp EEEEE--
T ss_pred ceEEEEE
Confidence 2334443
No 8
>COG2245 Predicted membrane protein [Function unknown]
Probab=42.22 E-value=68 Score=29.07 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=37.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcCC----CcchhhHHhhHHHHHHHHHHHHHHh--hcc
Q 024735 107 RINKWGRVALLAGGDVLALLLFSAIGRFNHGF----SVFDFDTLRTADPFIAGWFLSAYFL--GGY 166 (263)
Q Consensus 107 r~~~w~rv~LlA~gDvvaVllFA~IGR~SHg~----~~~~~gvl~TAwPFL~GW~lgw~L~--g~Y 166 (263)
|.-+......+++.=...+++|++.|-.-|-. -..+.+-+....+|++||++.|.+. ++|
T Consensus 53 ~IF~~yl~~~v~~l~~~vvvifatag~s~~~~~~~~~~~~~~~~~~l~~~Lag~Vi~wIl~Iisay 118 (182)
T COG2245 53 RIFNNYLIAVVLGLVGFVVVIFATAGFSLVALLLGTFMLPAHGLSALGSFLAGFVILWILYIISAY 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555566677788777766632 2224566777889999999988654 455
No 9
>PF06532 DUF1109: Protein of unknown function (DUF1109); InterPro: IPR009495 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.60 E-value=1.8e+02 Score=25.84 Aligned_cols=73 Identities=11% Similarity=-0.046 Sum_probs=40.3
Q ss_pred HHHHHHHH-HHHHhhhcCCC---cchhhHHhhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHH
Q 024735 121 DVLALLLF-SAIGRFNHGFS---VFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLG 194 (263)
Q Consensus 121 DvvaVllF-A~IGR~SHg~~---~~~~gvl~TAwPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vG 194 (263)
=+.+++++ +.+|- -|+.. .++.-+...+.+++++....+...+.-+++......+.-.....+..|+.++.-.
T Consensus 25 ~~~~~~l~~~~~g~-Rpdl~~~~~~p~f~~k~~~~~~la~~a~~a~~~l~rPg~~~~~~~~~l~l~~~~l~~~~~~~~ 101 (204)
T PF06532_consen 25 AAAAAALMLALLGL-RPDLAQALATPRFWIKFAFALALAVAAAWAAFRLSRPGGRRRRWWALLALPFALLWLAALLSL 101 (204)
T ss_pred HHHHHHHHHHHHcC-cccHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 34444444 44444 34431 2233467888999999999998888876763322222222223344566544333
No 10
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=36.85 E-value=4.4e+02 Score=26.31 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcc
Q 024735 208 YTFILVTMGTTAVLLIGWRALLFSFLP 234 (263)
Q Consensus 208 ~sFvlVA~~~laVlLlGWRal~a~v~~ 234 (263)
-++++.+.+...+++.++|.++..+..
T Consensus 114 R~v~il~~~l~l~ll~~~R~l~r~ll~ 140 (476)
T PRK15204 114 RYVWVFCWTFALILVPFFRALTKHLLN 140 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888899999988776543
No 11
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=33.40 E-value=3.1e+02 Score=23.98 Aligned_cols=96 Identities=23% Similarity=0.420 Sum_probs=54.7
Q ss_pred HHHHHHhhhcCCCcchhhHHhhHHHHHHHHHHHHHHhhc--cc-CCCCCCccchhhhhhhhchhhhHHHHHHHHHHhhcC
Q 024735 127 LFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGG--YA-DDGRGMNGLSKAVVAATKSWAAGVPLGLIIRAVTSG 203 (263)
Q Consensus 127 lFA~IGR~SHg~~~~~~gvl~TAwPFL~GW~lgw~L~g~--Y~-~~~~~~~~~p~gv~~~a~vWlvAv~vGl~LR~l~~G 203 (263)
+|...|-.-+-.+..-..+++.+--+++|++.++++... |. +|..=-....++.. .+++.=+++=+++|...++
T Consensus 39 lfmstG~lmf~~P~~~~~~~~~l~A~~~G~lFs~~Li~ts~fEvrd~~Iy~krSkaF~---~ili~LlviR~~l~~~l~~ 115 (148)
T PF07301_consen 39 LFMSTGFLMFVFPFFRPPWLEVLEAFLVGALFSYPLIKTSKFEVRDGQIYLKRSKAFI---FILIGLLVIRIVLKSYLSG 115 (148)
T ss_pred HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhceEEEECCeEEEeccccHH---HHHHHHHHHHHHHHHHHHc
Confidence 356666655554443345678888899999999988864 22 22110000122333 3566666667777776666
Q ss_pred CCCCc----hhHHHHHHHHHHHHHHHHHHH
Q 024735 204 HLPPY----TFILVTMGTTAVLLIGWRALL 229 (263)
Q Consensus 204 g~p~~----sFvlVA~~~laVlLlGWRal~ 229 (263)
+..+. -|.++|.+ .++-||...
T Consensus 116 ~i~~~~~~~mFf~lAfg----mIvpWRiam 141 (148)
T PF07301_consen 116 SIDPGQLSGMFFLLAFG----MIVPWRIAM 141 (148)
T ss_pred cCCHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44322 34444443 567899643
No 12
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=30.70 E-value=91 Score=28.12 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccccCCCchhhHHH
Q 024735 209 TFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELFEL 255 (263)
Q Consensus 209 sFvlVA~~~laVlLlGWRal~a~v~~~~~~~~~~~~r~g~p~e~~~l 255 (263)
+|.+.+.......+.-||- +++.+++...+-+||||+-+-
T Consensus 89 p~~~~~~~~~~~a~~~~r~-------~~~~~~~~~~~~~nP~~L~~A 128 (211)
T PF13194_consen 89 PLLAMALVGLLAALLLWRR-------REEPEEDEELKLSNPFELKSA 128 (211)
T ss_pred HHHHHHHHHHHHHHHHHHh-------ccccCCCCCCCCCCCCcHHHH
Confidence 5555444444444444544 223344445568999998653
No 13
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.93 E-value=40 Score=27.99 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 024735 147 RTADPFIAGWFLSAYFLG 164 (263)
Q Consensus 147 ~TAwPFL~GW~lgw~L~g 164 (263)
.-+||||+|.++++..+.
T Consensus 14 g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CcccHhHHHHHHHHHHHH
Confidence 678999999988876653
No 14
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.22 E-value=4.2e+02 Score=28.10 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcchhhHHhhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhhhhchhhhHHHHHHHH
Q 024735 118 AGGDVLALLLFSAIGRFNHGFSVFDFDTLRTADPFIAGWFLSAYFLGGYADDGRGMNGLSKAVVAATKSWAAGVPLGLII 197 (263)
Q Consensus 118 A~gDvvaVllFA~IGR~SHg~~~~~~gvl~TAwPFL~GW~lgw~L~g~Y~~~~~~~~~~p~gv~~~a~vWlvAv~vGl~L 197 (263)
+.-|++++.+=..++..--.. ... ..+.++.=+++. ...+.|.|+.--+ . ..+ .+....++ ..+.++ +.+
T Consensus 3 ~~~D~~~v~~s~~~~~~lr~~-~~~-~~~~~~~~l~~~---~~~~~glYr~vwR-~-s~~-~~~~i~~a-~~~~~~-~~l 72 (588)
T COG1086 3 ILTDLLLVLVALALALLLRDE-LSA-SLWSGAQLLTIC---VFILFGLYRAVWR-A-SVS-DLFIILKA-VLTSAL-VSL 72 (588)
T ss_pred ehHHHHHHHHHHHHHHHHHhc-chH-HHHHHHHHHHHH---HHHHhhhHHHHHh-c-chH-HHHHHHHH-HHHHHH-HHH
Confidence 345777766655555544422 222 233333334444 3355677765333 2 122 23333455 666666 888
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 024735 198 RAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDD 236 (263)
Q Consensus 198 R~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a~v~~~~ 236 (263)
...+.+...+-+.+++......+++.+=|..+..+....
T Consensus 73 ~~~~~~~~~~~s~~~~~~~l~~~~i~~~R~~~R~~~~~~ 111 (588)
T COG1086 73 LFFSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALRDAL 111 (588)
T ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887666333467777777777777877777777665443
No 15
>PRK13702 replication protein; Provisional
Probab=26.18 E-value=33 Score=27.61 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=12.9
Q ss_pred CCccccccCCCchhhHH
Q 024735 238 SKKNDVYRRGNPFELFE 254 (263)
Q Consensus 238 ~~~~~~~r~g~p~e~~~ 254 (263)
+...+.||+|||+.--|
T Consensus 12 ~~~kR~yRKG~Pls~aE 28 (85)
T PRK13702 12 SGAKRAYRKGNPLSAAE 28 (85)
T ss_pred ccCCCCCcCCCCCCHHH
Confidence 45567999999986554
No 16
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=24.03 E-value=78 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.8
Q ss_pred hHHhhHHHHHHHHHHHHHHhh
Q 024735 144 DTLRTADPFIAGWFLSAYFLG 164 (263)
Q Consensus 144 gvl~TAwPFL~GW~lgw~L~g 164 (263)
-++...|||.+|-++..+...
T Consensus 5 Pv~kP~wPFf~ag~iv~ygv~ 25 (54)
T PF04911_consen 5 PVLKPMWPFFAAGAIVYYGVN 25 (54)
T ss_pred chhhhhhHHHHHHHHHHHHHH
Confidence 378899999999888766653
No 17
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.97 E-value=1.1e+02 Score=26.08 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=32.0
Q ss_pred hhhh--HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 024735 186 SWAA--GVPLGLIIRAVTSGHLPPYTFILVTMGTTAVLLIGWRALLFSFLPDD 236 (263)
Q Consensus 186 vWlv--Av~vGl~LR~l~~Gg~p~~sFvlVA~~~laVlLlGWRal~a~v~~~~ 236 (263)
.|.. |..+| +-.+..... .+.|++.+..+....+++||.+.....+.+
T Consensus 28 l~~g~aA~~vg--~~~l~~~~~-~~q~v~f~~lsv~~~~l~rr~~~~~~~~~~ 77 (140)
T COG1585 28 LWLGLAALAVG--LALLLLLSW-WLQLVLFAILSVLLALLGRRFVRRRLKPSD 77 (140)
T ss_pred HHHHHHHHHHH--HHHHccchH-HHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 4544 44444 333333333 478888888888999999999887766654
No 18
>PRK10726 hypothetical protein; Provisional
Probab=21.60 E-value=1.8e+02 Score=24.29 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhhcCCC
Q 024735 189 AGVPLGLIIRAVTSGHL 205 (263)
Q Consensus 189 vAv~vGl~LR~l~~Gg~ 205 (263)
++|.+|++++.+..|+.
T Consensus 64 vsVlvGi~l~~Ll~g~l 80 (105)
T PRK10726 64 VSVLVGIALHSLLRGKL 80 (105)
T ss_pred HHHHHHHHHHHHhccch
Confidence 46778999999998876
Done!