Query 024735
Match_columns 263
No_of_seqs 118 out of 184
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 6.3 1.2E+03 0.041 20.0 7.1 13 184-196 413-425 (491)
2 3bbn_U Ribosomal protein S21; 6.2 1.5E+02 0.005 25.9 0.7 10 22-31 18-27 (190)
3 1pzq_A Erythronolide synthase; 5.6 1.6E+02 0.0054 20.9 0.4 10 254-263 35-44 (60)
4 1pw4_A Glycerol-3-phosphate tr 5.3 1.3E+03 0.044 19.3 7.8 20 207-226 186-205 (451)
5 2qrd_A SNF1-like protein kinas 5.1 2.7E+02 0.0091 22.7 1.6 13 248-260 119-131 (137)
6 2l34_A TYRO protein tyrosine k 4.9 6.9E+02 0.024 15.6 3.2 20 111-130 6-25 (33)
7 2k21_A Potassium voltage-gated 4.9 4.4E+02 0.015 21.8 2.7 27 207-235 52-78 (138)
8 1ixd_A Cylindromatosis tumour- 4.6 3.8E+02 0.013 20.8 2.1 11 92-102 31-41 (104)
9 1vf5_G Protein PET G; photosyn 4.5 2E+02 0.0067 19.1 0.3 8 243-250 28-35 (37)
10 2lx0_A Membrane fusion protein 4.5 6E+02 0.02 15.9 2.5 15 118-132 8-22 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=6.32 E-value=1.2e+03 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=7.5
Q ss_pred hchhhhHHHHHHH
Q 024735 184 TKSWAAGVPLGLI 196 (263)
Q Consensus 184 a~vWlvAv~vGl~ 196 (263)
...|+.+.++++.
T Consensus 413 ~~~~~~~~i~~~~ 425 (491)
T 4gc0_A 413 AAQWLANYFVSWT 425 (491)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHH
Confidence 3457776665544
No 2
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=6.18 E-value=1.5e+02 Score=25.93 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=0.0
Q ss_pred ccCCCCCCCC
Q 024735 22 LSSSNPPLTS 31 (263)
Q Consensus 22 ~~~~~~~~~~ 31 (263)
|+|+|||...
T Consensus 18 ~~~sk~~~~~ 27 (190)
T 3bbn_U 18 LLPSKPPPPK 27 (190)
T ss_dssp ----------
T ss_pred hccCCCCCCC
Confidence 6788888733
No 3
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=5.57 E-value=1.6e+02 Score=20.87 Aligned_cols=10 Identities=60% Similarity=1.165 Sum_probs=7.4
Q ss_pred HHHHHhhhcC
Q 024735 254 ELLTSLVRRW 263 (263)
Q Consensus 254 ~ll~sl~~rw 263 (263)
+-|.||+|||
T Consensus 35 qrlesllrrw 44 (60)
T 1pzq_A 35 QRLESLLRRW 44 (60)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4467888888
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=5.32 E-value=1.3e+03 Score=19.29 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 024735 207 PYTFILVTMGTTAVLLIGWR 226 (263)
Q Consensus 207 ~~sFvlVA~~~laVlLlGWR 226 (263)
.+.|.+.+.......++.|.
T Consensus 186 ~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 186 HAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp TTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36777777666555555443
No 5
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=5.08 E-value=2.7e+02 Score=22.67 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=7.9
Q ss_pred CchhhHHHHHHhh
Q 024735 248 NPFELFELLTSLV 260 (263)
Q Consensus 248 ~p~e~~~ll~sl~ 260 (263)
|||+||||-..|+
T Consensus 119 s~~~Fldlca~Li 131 (137)
T 2qrd_A 119 SSFPFLDLCAMLV 131 (137)
T ss_dssp CCTTHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 5666666655554
No 6
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=4.91 E-value=6.9e+02 Score=15.61 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 024735 111 WGRVALLAGGDVLALLLFSA 130 (263)
Q Consensus 111 w~rv~LlA~gDvvaVllFA~ 130 (263)
-+.++=++.+|++++++.++
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~ 25 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIAL 25 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHHHHHHHH
Confidence 34566677789888776554
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=4.88 E-value=4.4e+02 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=20.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 024735 207 PYTFILVTMGTTAVLLIGWRALLFSFLPD 235 (263)
Q Consensus 207 ~~sFvlVA~~~laVlLlGWRal~a~v~~~ 235 (263)
..-+|++.++|-++|++|= +.++++.+
T Consensus 52 ~ylYIL~vmgffgff~~GI--mLsYiRSK 78 (138)
T 2k21_A 52 EALYVLMVLGFFGFFTLGI--MLSYIRSK 78 (138)
T ss_dssp TTCHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHH--HHHHhHhh
Confidence 3689999999999999985 44444443
No 8
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=4.59 E-value=3.8e+02 Score=20.77 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=6.8
Q ss_pred cccceeeeccC
Q 024735 92 PLEGVIQFEKP 102 (263)
Q Consensus 92 ~~~gv~~~dkp 102 (263)
...|+|++=-+
T Consensus 31 ~~~GtVryvG~ 41 (104)
T 1ixd_A 31 PFYGVIRWIGQ 41 (104)
T ss_dssp CCCEEEEEEEC
T ss_pred CcEEEEEEecc
Confidence 34678776544
No 9
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=4.47 E-value=2e+02 Score=19.08 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=2.0
Q ss_pred cccCCCch
Q 024735 243 VYRRGNPF 250 (263)
Q Consensus 243 ~~r~g~p~ 250 (263)
.|||||.+
T Consensus 28 QyrRg~ql 35 (37)
T 1vf5_G 28 QYKRPNEL 35 (37)
T ss_dssp HTCC----
T ss_pred HHhhcccc
Confidence 35555544
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=4.46 E-value=6e+02 Score=15.94 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 024735 118 AGGDVLALLLFSAIG 132 (263)
Q Consensus 118 A~gDvvaVllFA~IG 132 (263)
+.+.+++++-|.++|
T Consensus 8 viaglvalltflafg 22 (32)
T 2lx0_A 8 VIAGLVALLTFLAFG 22 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Done!