Query 024735
Match_columns 263
No_of_seqs 118 out of 184
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 13:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024735.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024735hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g5ta_ c.37.1.11 (A:) ATP:cor 7.2 91 0.0067 23.7 2.0 14 190-203 17-30 (157)
2 d2qrda1 d.129.6.2 (A:450-576) 7.2 81 0.0059 23.7 1.6 14 247-260 108-121 (127)
3 d2qlva1 d.129.6.2 (A:460-630) 6.7 88 0.0064 24.6 1.6 15 247-261 151-165 (171)
4 d1wkca_ c.124.1.6 (A:) Hypothe 5.7 1E+02 0.0075 23.0 1.5 20 83-102 150-175 (175)
5 d1pzqa_ a.34.3.1 (A:) Erythron 5.5 65 0.0047 21.4 0.1 9 255-263 36-44 (60)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 3.5 4.5E+02 0.033 15.2 3.3 24 211-234 8-31 (33)
7 d1ldda_ a.4.5.34 (A:) Anaphase 3.5 2.4E+02 0.017 19.2 1.9 14 145-158 5-18 (74)
8 d1vyqa1 b.85.4.1 (A:1-159) Deo 3.4 1E+02 0.0074 23.0 -0.3 22 43-64 87-110 (159)
9 d1n1ba2 a.128.1.3 (A:271-598) 3.2 1.8E+02 0.013 24.3 1.1 22 242-263 82-103 (328)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 3.1 1.3E+02 0.0096 20.5 0.1 46 208-253 20-65 (91)
No 1
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=7.25 E-value=91 Score=23.75 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhcC
Q 024735 190 GVPLGLIIRAVTSG 203 (263)
Q Consensus 190 Av~vGl~LR~l~~G 203 (263)
|+.+|++||++-+|
T Consensus 17 TAAlG~alRA~G~G 30 (157)
T d1g5ta_ 17 TAAFGTAARAVGHG 30 (157)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC
Confidence 56679999998654
No 2
>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=7.16 E-value=81 Score=23.71 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=10.8
Q ss_pred CCchhhHHHHHHhh
Q 024735 247 GNPFELFELLTSLV 260 (263)
Q Consensus 247 g~p~e~~~ll~sl~ 260 (263)
.|||+||||-+.|+
T Consensus 108 ~s~~pFldl~a~LI 121 (127)
T d2qrda1 108 KSSFPFLDLCAMLV 121 (127)
T ss_dssp CCCTTHHHHHHHHH
T ss_pred cCCccHHHHHHHHH
Confidence 47888888877765
No 3
>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing protein kinase SNF1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=6.71 E-value=88 Score=24.62 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.1
Q ss_pred CCchhhHHHHHHhhh
Q 024735 247 GNPFELFELLTSLVR 261 (263)
Q Consensus 247 g~p~e~~~ll~sl~~ 261 (263)
.|||+||||-..|+-
T Consensus 151 ~Sp~pFldlca~LI~ 165 (171)
T d2qlva1 151 FSAYPFLHLTTKLIM 165 (171)
T ss_dssp HTSHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHH
Confidence 489999999887763
No 4
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}
Probab=5.75 E-value=1e+02 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=14.4
Q ss_pred eeeeccCCccc------cceeeeccC
Q 024735 83 TVSVGQGNVPL------EGVIQFEKP 102 (263)
Q Consensus 83 ~v~v~~~~~~~------~gv~~~dkp 102 (263)
.++.|+-++|+ +||++|-||
T Consensus 150 ~ip~e~hDi~ld~iiTe~gi~~~k~p 175 (175)
T d1wkca_ 150 ALPRDPWDVPVDHLATEAGVEAVKRP 175 (175)
T ss_dssp CCCCCTTCCCCSEEEETTEEEECCCC
T ss_pred CCCCCcccccCCEEEeCcccEEecCC
Confidence 47778888887 566777666
No 5
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=5.48 E-value=65 Score=21.42 Aligned_cols=9 Identities=67% Similarity=1.232 Sum_probs=6.2
Q ss_pred HHHHhhhcC
Q 024735 255 LLTSLVRRW 263 (263)
Q Consensus 255 ll~sl~~rw 263 (263)
-|.+|+|||
T Consensus 36 rle~llrrw 44 (60)
T d1pzqa_ 36 RLESLLRRW 44 (60)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 366777777
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=3.50 E-value=4.5e+02 Score=15.16 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 024735 211 ILVTMGTTAVLLIGWRALLFSFLP 234 (263)
Q Consensus 211 vlVA~~~laVlLlGWRal~a~v~~ 234 (263)
..|.++..++.|+=|=.+++...+
T Consensus 8 l~vi~il~l~ilvfw~gv~avf~a 31 (33)
T d1xmec1 8 LAVILVLTLTILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666667777776544
No 7
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.47 E-value=2.4e+02 Score=19.17 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=11.1
Q ss_pred HHhhHHHHHHHHHH
Q 024735 145 TLRTADPFIAGWFL 158 (263)
Q Consensus 145 vl~TAwPFL~GW~l 158 (263)
-++..|||++|-+-
T Consensus 5 ~lq~~w~yI~gMLt 18 (74)
T d1ldda_ 5 TLQRSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56789999999764
No 8
>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]}
Probab=3.40 E-value=1e+02 Score=23.04 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.3
Q ss_pred ccCcccc--ceeeeeeccCCCCCC
Q 024735 43 TIHPRRR--ALSLTLAKADGSVDS 64 (263)
Q Consensus 43 ~~~~~~~--~~~~~~~~~~~~~~~ 64 (263)
.||||++ ...|.|++..|=+||
T Consensus 87 ~l~pRSslaK~~l~l~n~~GIIDs 110 (159)
T d1vyqa1 87 LLFPRSSISKTPLRLANSIGLIDA 110 (159)
T ss_dssp EEEECGGGGGTTEEETTSSEEECT
T ss_pred EEEccCCccccCeeecccCccCCC
Confidence 4888999 456899999888888
No 9
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=3.19 E-value=1.8e+02 Score=24.30 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=17.1
Q ss_pred ccccCCCchhhHHHHHHhhhcC
Q 024735 242 DVYRRGNPFELFELLTSLVRRW 263 (263)
Q Consensus 242 ~~~r~g~p~e~~~ll~sl~~rw 263 (263)
|.|....-+|-+|++|..|+||
T Consensus 82 D~yD~ygt~eEl~~ft~ai~rW 103 (328)
T d1n1ba2 82 DIYDVYGTLDELELFTDTFKRW 103 (328)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHhcccCCHHHHHHHHHHHHhc
Confidence 3455555678899999999999
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.15 E-value=1.3e+02 Score=20.50 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccccCCCchhhH
Q 024735 208 YTFILVTMGTTAVLLIGWRALLFSFLPDDKSKKNDVYRRGNPFELF 253 (263)
Q Consensus 208 ~sFvlVA~~~laVlLlGWRal~a~v~~~~~~~~~~~~r~g~p~e~~ 253 (263)
++|.+...++..++.+-=..++.+-.+++..+......-++++|..
T Consensus 20 ~~~~i~~iv~v~V~~~~~~~~~ryR~~~~~~~~~~~~~~n~~lEi~ 65 (91)
T d1fftb2 20 TAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAV 65 (91)
T ss_dssp HHHHHTTTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeeccCCccCCCCcccCCceehhh
Done!