BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024737
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 89/166 (53%), Gaps = 24/166 (14%)
Query: 77 ARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGR 130
A R + +VVA GIG +PWN+P D+KFF+ LT P KRNAVVMGR
Sbjct: 19 ALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGR 78
Query: 131 KTWESISPLYRPLPGRLNVVLTHS-------------GSFNIASLENVEICRSIHLALEL 177
KTW+SI P +RPLPGRLNVVL+ + N+ + V + + AL L
Sbjct: 79 KTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRL 138
Query: 178 LAEPPYCSSIEKVFVIGGGQILREALNAPEC----DAIHITKIETS 219
LA P Y SIE V+ IGGG + EAL P C AI+ T I S
Sbjct: 139 LASPNYTPSIETVYCIGGGSVYAEALRPP-CVHLLQAIYRTTIRAS 183
>pdb|2FZJ|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|3D80|A Chain A, Structural Analysis Of A Holo Enzyme Complex Of Mouse
Dihydrofolate Reductase With Nadph And A Ternary Complex
Wtih The Potent And Selective Inhibitor
2,4-Diamino-6-(2'-Hydroxydibenz[b,F]azepin-5-Yl)
Methylpteridine
pdb|3D84|X Chain X, Structural Analysis Of A Holo Enzyme Complex Of Mouse
Dihydrofolate Reductase With Nadph And A Ternary Complex
With The Potent And Selective Inhibitor
2.4-Diamino-6-(-2'-Hydroxydibenz[b,F]azepin-5-
Yl)methylpteridine
pdb|3K47|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
Of 2,4- Diaminofuro[2,3-D]pyrimidines As Ternary
Complexes With Nadph And Mouse Dihydrofolate Reductase
Length = 186
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS 137
RP +VA + +MGIGK+G LPW L ++ K+F+++T ++S GK+N V+MGRKTW SI
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 138 PLYRPLPGRLNVVLTHS------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVF 191
RPL R+N+VL+ G+ +A +S+ AL L+ +P S ++ V+
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAHFLA--------KSLDDALRLIEQPELASKVDMVW 113
Query: 192 VIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVEN 246
++GG + +EA+N P + +T+I E DTF P IDL ++ Y S+ E
Sbjct: 114 IVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEK 173
Query: 247 NIQFSFVTYVR 257
I++ F Y +
Sbjct: 174 GIKYKFEVYEK 184
>pdb|3K45|A Chain A, Alternate Binding Modes Observed For The E- And Z-Isomers
Of 2,4- Diaminofuro[2,3d]pyrimidines As Ternary
Complexes With Nadph And Mouse Dihydrofolate Reductase
Length = 186
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS 137
RP +VA + +MGIGK+G LPW L ++ K+F+++T ++S GK+N V+MGRKTW SI
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 138 PLYRPLPGRLNVVLTHS------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVF 191
RPL R+N+VL+ G+ +A +S+ AL L+ +P S ++ V+
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAHFLA--------KSLDDALRLIEQPDLASKVDMVW 113
Query: 192 VIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVEN 246
++GG + +EA+N P + +T+I E DTF P IDL ++ Y S+ E
Sbjct: 114 IVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEK 173
Query: 247 NIQFSFVTYVR 257
I++ F Y +
Sbjct: 174 GIKYKFEVYEK 184
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 90/166 (54%), Gaps = 24/166 (14%)
Query: 77 ARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGR 130
A R + +VVA GIG +PWN+P D+KFF+ +T P KRNAVVMGR
Sbjct: 19 ALRAFSLVVAVDERGGIGDGRSIPWNVPEDMKFFRDVTTKLRGKNVKPSPAKRNAVVMGR 78
Query: 131 KTWESISPLYRPLPGRLNVVLTHS-------------GSFNIASLENVEICRSIHLALEL 177
KTW+SI P +RPLPGRLNVVL+ + N+ + V + + AL+L
Sbjct: 79 KTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALQL 138
Query: 178 LAEPPYCSSIEKVFVIGGGQILREALNAPEC----DAIHITKIETS 219
LA P Y SIE V+ IGGG + EAL P C AI+ T I S
Sbjct: 139 LASPNYTPSIETVYCIGGGSVYAEALRPP-CVHLLQAIYRTTIRAS 183
>pdb|3GHV|A Chain A, Human Dihydrofolate Reductase Q35kN64F DOUBLE MUTANT
INHIBITOR Complex
pdb|3S3V|A Chain A, Human Dihydrofolate Reductase Q35kN64F DOUBLE MUTANT
BINARY COMPLEX With Trimethoprim
Length = 186
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++FK++T ++S GK+N V+MG+KTW SI +RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1U70|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-Type And Leu22arg Variant
Mouse And Human Dihydrofolate Reductase
Length = 186
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 107/191 (56%), Gaps = 20/191 (10%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS 137
RP +VA + +MGIGK+G PW L ++ K+F+++T ++S GK+N V+MGRKTW SI
Sbjct: 2 RPLNCIVAVSQNMGIGKNGDRPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIP 61
Query: 138 PLYRPLPGRLNVVLTHS------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVF 191
RPL R+N+VL+ G+ +A +S+ AL L+ +P S ++ V+
Sbjct: 62 EKNRPLKDRINIVLSRELKEPPRGAHFLA--------KSLDDALRLIEQPELASKVDMVW 113
Query: 192 VIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVEN 246
++GG + +EA+N P + +T+I E DTF P IDL ++ Y S+ E
Sbjct: 114 IVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEK 173
Query: 247 NIQFSFVTYVR 257
I++ F Y +
Sbjct: 174 GIKYKFEVYEK 184
>pdb|1AI9|A Chain A, Candida Albicans Dihydrofolate Reductase
pdb|1AI9|B Chain B, Candida Albicans Dihydrofolate Reductase
pdb|1AOE|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And
1,3-Diamino-7-(1-Ethyepropye)-7h-Pyrralo-[3,2-
F]quinazoline (Gw345)
pdb|1AOE|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And
1,3-Diamino-7-(1-Ethyepropye)-7h-Pyrralo-[3,2-
F]quinazoline (Gw345)
pdb|1IA1|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(Phenylsulfanyl)-2,4-Quinazolinediamine
(Gw997)
pdb|1IA1|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(Phenylsulfanyl)-2,4-Quinazolinediamine
(Gw997)
pdb|1IA2|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-[(4-Methylphenyl)sulfanyl]-2,4-
Quinazolinediamine (Gw578)
pdb|1IA2|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-[(4-Methylphenyl)sulfanyl]-2,4-
Quinazolinediamine (Gw578)
pdb|1IA3|A Chain A, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5- [(4-Tert-Butylphenyl)sulfanyl]-2,4-Quinazolinediamine
(Gw995)
pdb|1IA3|B Chain B, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5- [(4-Tert-Butylphenyl)sulfanyl]-2,4-Quinazolinediamine
(Gw995)
pdb|1IA4|A Chain A, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5-
{[4-(4-Morpholinyl)phenyl]sulfanyl}-2,
4-Quinazolinediamin (Gw2021)
pdb|1IA4|B Chain B, Candida Albicans Dihydrofolate Reductase Complex In Which
The Dihydronicotinamide Moiety Of Dihydro-Nicotinamide-
Adenine-Dinucleotide Phosphate (Nadph) Is Displaced By
5-
{[4-(4-Morpholinyl)phenyl]sulfanyl}-2,
4-Quinazolinediamin (Gw2021)
pdb|1M78|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-Chloryl-2,4,6-Quinazolinetriamine (Gw1225)
pdb|1M78|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-Chloryl-2,4,6-Quinazolinetriamine (Gw1225)
pdb|1M79|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(4-Methoxyphenoxy)-2,4-Quinazolinediamine
(Gw1466)
pdb|1M79|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 5-(4-Methoxyphenoxy)-2,4-Quinazolinediamine
(Gw1466)
pdb|1M7A|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 7-[2-Methoxy-1-(Methoxymethyl)ethyl]-7h-
Pyrrolo[3,2-F] Quinazoline-1,3-Diamine (Gw557)
pdb|1M7A|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Dihydro-Nicotinamide-Adenine-Dinucleotide Phosphate
(Nadph) And 7-[2-Methoxy-1-(Methoxymethyl)ethyl]-7h-
Pyrrolo[3,2-F] Quinazoline-1,3-Diamine (Gw557)
pdb|3QLR|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLR|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLS|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLS|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLW|A Chain A, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Ethylpyrimidine-2,
4-Diamine (Ucp120b)
pdb|3QLW|B Chain B, Candida Albicans Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Ethylpyrimidine-2,
4-Diamine (Ucp120b)
Length = 192
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 25/187 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+V A +GIG GK+PW L ++++FK +T T+ P RNAV+MGRKTWESI +RP
Sbjct: 9 IVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRP 68
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP RLN++L+ S I +N+ SI +L L S +E+VF+IGG +I E
Sbjct: 69 LPDRLNIILSRSYENEIID-DNIIHASSIESSLNL------VSDVERVFIIGGAEIYNEL 121
Query: 203 LNAPECDAIHITKIE----TSIECDTFI----------PAIDLSLFQQRYSSQPLVENNI 248
+N + IT+IE SIE DTF+ P +L Q++ ++E++I
Sbjct: 122 INNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSEL----QKFVGDTVLEDDI 177
Query: 249 QFSFVTY 255
+ TY
Sbjct: 178 KEGDFTY 184
>pdb|3QFX|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
pdb|3QFX|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
Length = 241
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 97/176 (55%), Gaps = 27/176 (15%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKT 132
RP+ VVVA+ GIG G +PW +P D+++F+++T + P KRNAVVMGRKT
Sbjct: 27 RPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKT 86
Query: 133 WESISPLYRPLPGRLNVVLTHSGSFNI-------------ASLENVEICRSIHLALELLA 179
W+S+ P +RPL RLNVVL+ S + A+ + V + + AL +L
Sbjct: 87 WDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLV 146
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPEC----DAIHITKIE-TSIECDTF--IPA 228
+ SSIE VF IGGG I ++AL AP C AIH T + S C F IPA
Sbjct: 147 SKEHTSSIETVFCIGGGTIYKQALCAP-CVNVLQAIHRTVVRPASNSCSVFFDIPA 201
>pdb|3F8Y|A Chain A, Correlations Of Human Dihydrofolate Reductase With
Structural Data For Human Active Site Mutant Enzyme
Complexes
pdb|3GI2|A Chain A, Human Dihydrofolate Reductase Q35k Mutant Inhibitor
Complex
Length = 187
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++FK++T ++S GK+N V+MG+KTW SI RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 68 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 125
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 126 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 185
>pdb|3L3R|A Chain A, Structural, Computational And Kinetic Data For Antifolate
Interactions Against Pneumocystis Jirovecii,
Pneumocystis Carinii And Human Dihydrofolate Reductase
And Their Active Site Mutants
Length = 186
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++FK++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|3RG9|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
pdb|3RG9|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
Length = 240
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 97/176 (55%), Gaps = 27/176 (15%)
Query: 79 RPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMS------TSDPGKRNAVVMGRKT 132
RP+ VVVA+ GIG G +PW +P D+++F+++T + P KRNAVVMGRKT
Sbjct: 27 RPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKT 86
Query: 133 WESISPLYRPLPGRLNVVLTHSGSFNI-------------ASLENVEICRSIHLALELLA 179
W+S+ P +RPL RLNVVL+ S + A+ + V + + AL +L
Sbjct: 87 WDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLV 146
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPEC----DAIHITKIE-TSIECDTF--IPA 228
+ SSIE VF IGGG I ++AL AP C AIH T + S C F IPA
Sbjct: 147 SKEHTSSIETVFCIGGGTIYKQALCAP-CVNVLQAIHRTVVRPASNSCSVFFDIPA 201
>pdb|3F91|A Chain A, Structural Data For Human Active Site Mutant Enzyme
Complexes
Length = 187
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI +RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 68 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 125
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 126 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 185
>pdb|3OAF|A Chain A, Structural And Kinetic Data For Antifolate Interactions
Against Pneumocystis Jirovecii, Pneumocystis Carinii And
Human Dihydrofolate Reductase And Thier Active Site
Mutants
pdb|3N0H|A Chain A, Hdhfr Double Mutant Q35sN64F TRIMETHOPRIM BINARY COMPLEX
Length = 186
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI +RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1MVS|A Chain A, Analysis Of Two Polymorphic Forms Of A Pyrido[2,3-
D]pyrimidine N9-C10 Reverse-Bridge Antifolate Binary
Complex With Human Dihydrofolate Reductase
pdb|1MVT|A Chain A, Analysis Of Two Polymorphic Forms Of A Pyrido[2,3-
D]pyrimidine N9-C10 Reverse-Bridge Antifolate Binary
Complex With Human Dihydrofolate Reductase
pdb|3FS6|A Chain A, Correlations Of Inhibitor Kinetics For Pneumocystis
Jirovecii And Human Dihydrofolate Reductase With
Structural Data For Human Active Site Mutant Enzyme
Complexes
pdb|3GYF|A Chain A, Human Dhfr With Z-Isomer In Orthorhombic Lattice
pdb|2W3A|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|2W3A|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|2W3B|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And A
Lipophilic Antifolate Selective For Mycobacterium Avium
Dhfr, 6-((2,5-Diethoxyphenyl)aminomethyl)-2,4-Diamino-5-
Methylpyrido(2,3-D)pyrimidine (Sri-8686)
pdb|2W3B|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And A
Lipophilic Antifolate Selective For Mycobacterium Avium
Dhfr, 6-((2,5-Diethoxyphenyl)aminomethyl)-2,4-Diamino-5-
Methylpyrido(2,3-D)pyrimidine (Sri-8686)
pdb|2W3M|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
Folate
pdb|2W3M|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
Folate
Length = 187
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 68 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 125
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 126 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 185
>pdb|1DHF|A Chain A, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|1DHF|B Chain B, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|2DHF|A Chain A, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|2DHF|B Chain B, Crystal Structures Of Recombinant Human Dihydrofolate
Reductase Complexed With Folate And 5-Deazofolate
pdb|1KMS|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And 6-
([5-Quinolylamino]methyl)-2,4-Diamino-5-Methylpyrido[2,
3- D]pyrimidine (Sri-9439), A Lipophilic Antifolate
pdb|1KMV|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
(Z)-
6-(2-[2,5-Dimethoxyphenyl]ethen-1-Yl)-2,4-Diamino-5-
Methylpyrido[2,3-D]pyrimidine (Sri-9662), A Lipophilic
Antifolate
pdb|1PD8|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-n-methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1PD9|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-N-Methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1PDB|A Chain A, Analysis Of Three Crystal Structure Determinations Of A 5-
Methyl-6-N-Methylanilino Pyridopyrimidine Antifolate
Complex With Human Dihydrofolate Reductase
pdb|1S3U|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1S3V|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1S3W|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifoaltes In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|1U72|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-Type And Leu22arg Variant
Mouse And Human Dihydrfolate Reductase Ternary Crystal
Complexes With Methotrexate And Nadph
pdb|1YHO|A Chain A, Solution Structure Of Human Dihydrofolate Reductase
Complexed With Trimethoprim And Nadph, 25 Structures
pdb|2C2S|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
2,4-
Diamino-5-(1-O-Carboranylmethyl)-6-Methylpyrimidine, A
Novel Boron Containing, Nonclassical Antifolate
pdb|2C2S|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
2,4-
Diamino-5-(1-O-Carboranylmethyl)-6-Methylpyrimidine, A
Novel Boron Containing, Nonclassical Antifolate
pdb|2C2T|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
2,4- Diamino-5-((7,8-Dicarbaundecaboran-7-Yl)methyl)-6-
Methylpyrimidine, A Novel Boron Containing, Nonclassical
Antifolate
pdb|2C2T|B Chain B, Human Dihydrofolate Reductase Complexed With Nadph And
2,4- Diamino-5-((7,8-Dicarbaundecaboran-7-Yl)methyl)-6-
Methylpyrimidine, A Novel Boron Containing, Nonclassical
Antifolate
pdb|1DRF|A Chain A, Crystal Structure Of Human Dihydrofolate Reductase
Complexed With Folate
pdb|1HFR|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
pdb|1OHJ|A Chain A, Human Dihydrofolate Reductase, Monoclinic (P21) Crystal
Form
pdb|1OHK|A Chain A, Human Dihydrofolate Reductase, Orthorhombic (P21 21 21)
Crystal Form
pdb|3GHW|A Chain A, Human Dihydrofolate Reductase Inhibitor Complex
pdb|3NXR|A Chain A, Perferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXT|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-And
Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2m,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXV|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXX|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro-2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NXY|A Chain A, Preferential Selection Of Isomer Binding From Chiral
Mixtures: Alernate Binding Modes Observed Fro The E- And
Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
pdb|3NZD|A Chain A, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five
5-(Omega-Carboxy(Alkyloxy(Pyrido[2,3- D]pyrimidine
Derivatives
pdb|3NTZ|A Chain A, Design, Synthesis, Biological Evaluation And X-Ray Crystal
Structures Of Novel Classical
6,5,6-Tricyclicbenzo[4,5]thieno[2,3-D]pyrimidines As
Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors
pdb|3NU0|A Chain A, Design, Synthesis, Biological Evaluation And X-ray Crystal
Structure Of Novel Classical
6,5,6-tricyclicbenzo[4,5]thieno[2,3-d]pyrimidines As
Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors
pdb|3S7A|A Chain A, Human Dihydrofolate Reductase Binary Complex With Pt684
pdb|4DDR|A Chain A, Human Dihydrofolate Reductase Complexed With Nadph And
P218
Length = 186
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|3NXO|A Chain A, Perferential Selection Of Isomer Binding From Chiral
Mixtures: Alternate Binding Modes Observed For The E-
And Z-Isomers Of A Series Of 5-Substituted
2,4-Diaminofuro[2,3-D]pyrimidines As Ternary Complexes
With Nadph And Human Dihydrofolate Reductase
Length = 186
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPERNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|3F8Z|A Chain A, Human Dihydrofolate Reductase Structural Data With Active
Site Mutant Enzyme Complexes
Length = 187
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI RP
Sbjct: 8 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKSRP 67
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 68 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 125
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 126 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 185
>pdb|3GHC|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of
Classical And Nonclassical
2-Amino-4-Oxo-5-Substituted-6-Thieno[2,3- D]pyrimidines
As Dual Thymidylate Synthase And Dihydrofolate Reductase
Inhibitors And As Potential Antitumor Agenst
Length = 186
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F ++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEFRYFSRMTTTSSVEGKQNLVIMGKKTWFSIPEKSRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1DR1|A Chain A, 2.2 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Nadp+ And
Biopterin
pdb|1DR2|A Chain A, 2.3 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Thionadp+ And
Biopterin
pdb|1DR3|A Chain A, 2.3 Angstroms Crystal Structure Of Chicken Liver
Dihydrofolate Reductase Complexed With Thionadp+ And
Biopterin
pdb|1DR4|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR5|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR6|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|1DR7|A Chain A, Crystal Structures Of Organomercurial-Activated Chicken
Liver Dihydrofolate Reductase Complexes
pdb|8DFR|A Chain A, Refined Crystal Structures Of Chicken Liver Dihydrofolate
Reductase. 3 Angstroms Apo-Enzyme And 1.7 Angstroms
Nadph Holo-Enzyme Complex
Length = 189
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA +MGIGKDG LPW L ++ K+F+++T ++ GK+NAV+MG+KTW SI RP
Sbjct: 7 IVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L R+N+VL S A + +S+ AL LL P S ++ V+++GG + + A
Sbjct: 67 LKDRINIVL--SRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYSSQPL---VENNIQFSFVTYVR 257
+ P + +T+I E DTF P ID F+ Y P E+ IQ+ F Y +
Sbjct: 125 MEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQK 184
>pdb|3EIG|A Chain A, Crystal Structure Of A Methotrexate-Resistant Mutant Of
Human Dihydrofolate Reductase
Length = 186
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNERRYFERMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1HFQ|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
Length = 186
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNESRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1BOZ|A Chain A, Structure-Based Design And Synthesis Of Lipophilic 2,4-
Diamino-6-Substituted Quinazolines And Their Evaluation
As Inhibitors Of Dihydrofolate Reductase And Potential
Antitumor Agents
pdb|1HFP|A Chain A, Comparison Of Ternary Crystal Complexes Of Human
Dihydrofolate Reductase With Nadph And A Classical
Antitumor Furopyrimdine
Length = 186
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G LPW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDLPWPPLRNEGRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSRE--LKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1DLR|A Chain A, Methotrexate-Resistant Variants Of Human Dihydrofolate
Reductase With Substitution Of Leucine 22: Kinetics,
Crystallography And Potential As Selectable Markers
Length = 186
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G PW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDFPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ 235
+N P + +T+I E DTF P IDL ++
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK 157
>pdb|1DLS|A Chain A, Methotrexate-Resistant Variants Of Human Dihydrofolate
Reductase With Substitution Of Leucine 22: Kinetics,
Crystallography And Potential As Selectable Markers
Length = 186
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G PW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDYPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ 235
+N P + +T+I E DTF P IDL ++
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK 157
>pdb|1U71|A Chain A, Understanding The Role Of Leu22 Variants In Methotrexate
Resistance: Comparison Of Wild-type And Leu22arg Variant
Mouse And Human Dihydrofolate Reductase Ternary Crystal
Complexes With Methotrexate And Nadph
Length = 186
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 84 VVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+VA + +MGIGK+G PW L ++ ++F+++T ++S GK+N V+MG+KTW SI RP
Sbjct: 7 IVAVSQNMGIGKNGDRPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L GR+N+VL+ + RS+ AL+L +P + ++ V+++GG + +EA
Sbjct: 67 LKGRINLVLSR--ELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEA 124
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQ--QRYS---SQPLVENNIQFSFVTYVR 257
+N P + +T+I E DTF P IDL ++ Y S E I++ F Y +
Sbjct: 125 MNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEK 184
>pdb|1CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|2CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|3CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|4CD2|A Chain A, Ligand Induced Conformational Changes In The Crystal
Structures Of Pneumocystis Carinii Dihydrofolate
Reductase Complexes With Folate And Nadp+
pdb|1E26|A Chain A, Design, Synthesis And X-Ray Crystal Structure Of A Potent
Dual Inhibitor Of Thymidylate Synthase And Dihydrofolate
Reductase As An Antitumor Agent.
pdb|1LY3|A Chain A, Analysis Of Quinazoline And Pyridopyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1LY4|A Chain A, Analysis Of Quinazoline And Pyrido[2,3d]pyrimidine N9-C10
Reversed Bridge Antifolates In Complex With Nadp+ And
Pneumocystis Carinii Dihydrofolate Reductase
pdb|1KLK|A Chain A, Crystal Structure Of Pneumocystis Carinii Dihydrofolate
Reductase Ternary Complex With Pt653 And Nadph
pdb|1S3Y|A Chain A, Structure Determination Of Tetrahydroquinazoline
Antifolates In Complex With Human And Pneumocystis
Carinii Dihydrofolate Reductase: Correlations Of Enzyme
Selectivity And Stereochemistry
pdb|2FZH|A Chain A, New Insights Into Dihydrofolate Reductase Interactions:
Analysis Of Pneumocystis Carinii And Mouse Dhfr
Complexes With Nadph And Two Highly Potent Trimethoprim
Derivatives
pdb|2FZI|A Chain A, New Insights Into Dhfr Interactions: Analysis Of
Pneumocystis Carinii And Mouse Dhfr Complexes With Nadph
And Two Highly Potent Trimethoprim Derivatives
pdb|1DAJ|A Chain A, Comparison Of Ternary Complexes Of Pneumocystis Carinii
And Wild Type Human Dihydrofolate Reductase With
Coenzyme Nadph And A Novel Classical Antitumor
Furo[2,3d]pyrimidine Antifolate
pdb|1DYR|A Chain A, The Structure Of Pneumocystis Carinii Dihydrofolate
Reductase To 1.9 Angstroms Resolution
pdb|3NZ6|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZ9|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZA|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyrimidine
Derivatives
pdb|3NZB|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Potent
5-(Omega-Carboxyl(Alkyloxy) Pyrido[2,-D]pyrimidine
Derivatives
pdb|3NZC|X Chain X, Structural Analysis Of Pneumocystis Carinii And Human Dhfr
Complexes With Nadph And A Series Of Five Potent
5-(Omega-Carboxy(Alkyloxy) Pyrido[2,3-D]pyridine
Derivativea
pdb|3TD8|A Chain A, Structural Analysis Of Pneumocystis Carinii Dihydrofolate
Reductase Complex With Nadph And
2,4-Diamino-5-Methyl-6-[2'-(4-Carboxy-1-
Pentynyl)-5'-Methoxybenzyl]pyrido[2,3-D]pyrimidine
Length = 206
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 8/159 (5%)
Query: 75 LRARRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLT--MSTSDPGKR-NAVVMGRK 131
+ ++ ++VA T GIG+ LPW L ++ +FK++T + T D + N V+MGRK
Sbjct: 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRK 60
Query: 132 TWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSS---IE 188
TWESI +RPL GR+NVV+T + S ++ + + +S+ ALELL S I
Sbjct: 61 TWESIPLQFRPLKGRINVVITRNESLDLGN--GIHSAKSLDHALELLYRTYGSESSVQIN 118
Query: 189 KVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIP 227
++FVIGG Q+ + A++ P+ D I T I I CD F P
Sbjct: 119 RIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFP 157
>pdb|1VJ3|A Chain A, Structural Studies On Bio-Active Compounds. Crystal
Structure And Molecular Modeling Studies On The
Pneumocystis Carinii Dihydrofolate Reductase Cofactor
Complex With Tab, A Highly Selective Antifolate
Length = 205
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLT--MSTSDPGKR-NAVVMGRKTWESISPL 139
++VA T GIG+ LPW L ++ +FK++T + T D + N V+MGRKTWESI
Sbjct: 8 LIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQ 67
Query: 140 YRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSS---IEKVFVIGGG 196
+RPL GR+NVV+T + S ++ + + +S+ ALELL S I ++FVIGG
Sbjct: 68 FRPLKGRINVVITRNESLDLGN--GIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGA 125
Query: 197 QILREALNAPECDAIHITKIETSIECDTFIP 227
Q+ + A++ P+ D I T I I CD F P
Sbjct: 126 QLYKAAMDHPKLDRIMATIIYKDIHCDVFFP 156
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R+A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYRDA 122
Query: 203 LNAPECDAIHITKIE-TSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVR 257
L D I++T++ IE DT+ P I F Y SQ NI + F+ + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIP-ETFLPVYMSQTFCTKNISYDFMIFEK 177
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R+A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYRDA 122
Query: 203 LNAPECDAIHITKIE-TSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVR 257
L D I++T++ IE DT+ P I F Y SQ NI + F+ + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIP-ETFLPVYMSQTFCTKNISYDFMIFEK 177
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R+A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYRDA 122
Query: 203 LNAPECDAIHITKIE-TSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVR 257
L D I++T++ IE DT+ P I F Y SQ NI + F+ + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIP-ETFLPVYMSQTFCTKNISYDFMIFEK 177
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 9 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 66
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R+A
Sbjct: 67 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYRDA 122
Query: 203 LNAPECDAIHITKIE-TSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVR 257
L D I++T++ IE DT+ P I F Y SQ NI + F+ + +
Sbjct: 123 LKDNFVDRIYLTRVALEDIEFDTYFPEIP-ETFLPVYMSQTFCTKNISYDFMIFEK 177
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
VV A+ GIG +G+LPW++ DLKFF ++T + D K+NA++MGRKTW+SI RP
Sbjct: 7 VVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRP 64
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
L R+ VV++ S + A NV + R++ ++E L SIE +FV GG I R+A
Sbjct: 65 LKNRIIVVISSSLPQDEAD-PNVVVFRNLEDSIENLMND---DSIENIFVCGGESIYRDA 120
Query: 203 LNAPECDAIHITKIE-TSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYVR 257
L D I++T++ IE DT+ P I F Y SQ NI + F+ + +
Sbjct: 121 LKDNFVDRIYLTRVALEDIEFDTYFPEIP-ETFLPVYMSQTFCTKNISYDFMIFEK 175
>pdb|3JW3|A Chain A, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW3|B Chain B, Crystal Structure Of Bacillus Anthracis (F96i)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
Length = 168
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 61
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+IGG QI L
Sbjct: 62 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIIGGAQIY--DL 110
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 111 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 163
>pdb|3CSE|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3CSE|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3EEJ|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-Phenylphenyl)prop-1-
Ynyl]-6-Methylpyrimidine(Ucp111d) And Nadph
pdb|3EEJ|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-Phenylphenyl)prop-1-
Ynyl]-6-Methylpyrimidine(Ucp111d) And Nadph
pdb|3EEK|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(4-
Methylphenyl)phenyl)
Prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d4m) And Nadph
pdb|3EEK|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(4-
Methylphenyl)phenyl)
Prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d4m) And Nadph
pdb|3EEL|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(3,5-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp11153tm) And
Nadph
pdb|3EEL|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(3,5-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp11153tm) And
Nadph
pdb|3EEM|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(2,6-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d26m) And
Nadph
pdb|3EEM|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
2,4-
Diamino-5-[3-Methyl-3-(3-Methoxy-5-(2,6-Dimethylphenyl)
Phenyl)prop-1-Ynyl]-6-Methylpyrimidine(Ucp111d26m) And
Nadph
pdb|3QLX|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLX|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[(3r)-3-(3,4,
5-Trimethoxyphenyl)pent-1-Yn-1-Yl]pyrimidine-2,
4-Diamine (Ucp112a)
pdb|3QLY|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLY|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Methyl-5-[3-Methyl-3-(3,4,5-Trimethoxyphenyl)but-1-Yn-1-
Yl]pyrimidine-2,4-Diamine (Ucp115a)
pdb|3QLZ|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Propylpyrimidine-2,
4- Diamine (Ucp130b)
pdb|3QLZ|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 5-
[3-(2,
5-Dimethoxyphenyl)prop-1-Yn-1-Yl]-6-Propylpyrimidine-2,
4- Diamine (Ucp130b)
Length = 227
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 28/171 (16%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+V A +MGIG G LPW L ++K+F+++T T+D K+N V+MGRKTWESI +RP
Sbjct: 9 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 68
Query: 143 LPGRLNVVLTHS----------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFV 192
LP R+NVV++ S G ++ SL N LA E + IE++++
Sbjct: 69 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANE--------NKIERIYI 120
Query: 193 IGGGQILREALNAPECDAIHITKI----ETSI-ECDTFIPAIDLSLFQQRY 238
IGGG+I R++++ D ITKI ET+I + DTF+ +L +QR+
Sbjct: 121 IGGGEIYRQSMDL--ADHWLITKIMPLPETTIPQMDTFLQKQEL---EQRF 166
>pdb|3RO9|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-1-
Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3RO9|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-1-
Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3ROA|A Chain A, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Morpholin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1004)
pdb|3ROA|B Chain B, Candida Glabrata Dihydrofolate Reductase Complexed With
Nadph And 6-
Ethyl-5-[(3r)-3-[3-Methoxy-5-(Morpholin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1004)
Length = 225
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 28/171 (16%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+V A +MGIG G LPW L ++K+F+++T T+D K+N V+MGRKTWESI +RP
Sbjct: 7 IVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRP 66
Query: 143 LPGRLNVVLTHS----------GSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFV 192
LP R+NVV++ S G ++ SL N LA E + IE++++
Sbjct: 67 LPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANE--------NKIERIYI 118
Query: 193 IGGGQILREALNAPECDAIHITKI----ETSI-ECDTFIPAIDLSLFQQRY 238
IGGG+I R++++ D ITKI ET+I + DTF+ +L +QR+
Sbjct: 119 IGGGEIYRQSMDL--ADHWLITKIMPLPETTIPQMDTFLQKQEL---EQRF 164
>pdb|3JW5|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW5|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JWC|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWC|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWF|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWF|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWK|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWK|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 61
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 62 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIF--DL 110
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 111 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 163
>pdb|3JVX|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JVX|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JWM|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWM|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 12 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 61
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 62 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIY--DL 110
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 111 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 163
>pdb|3E0B|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3E0B|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 166
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 10 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 59
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 60 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIY--DL 108
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 109 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 161
>pdb|3S9U|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3S9U|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3SA1|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA1|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA2|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SA2|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SAI|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
pdb|3SAI|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
Length = 165
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 9 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 58
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 59 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIY--DL 107
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 108 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 160
>pdb|3FL8|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL9|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|4ELB|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
Length = 166
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 55
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 56 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIY--DL 104
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 105 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 157
>pdb|2QK8|A Chain A, Crystal Structure Of The Anthrax Drug Target, Bacillus
Anthracis Dihydrofolate Reductase
pdb|3DAT|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Bacillus Anthracis Dihydrofolate Reductase
Length = 162
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 55
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 56 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIY--DL 104
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 105 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 157
>pdb|2KGK|A Chain A, Solution Structure Of Bacillus Anthracis Dihydrofolate
Reductase
Length = 172
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 21/173 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD LPW LPS+L++ K+ TM + ++MGRK +E+I RPL
Sbjct: 6 MVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG-------HPLIMGRKNYEAIG---RPL 55
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR N+++T + +++ E E+ S+ EL C + E++F+ GG QI L
Sbjct: 56 PGRRNIIVTRNEGYHV---EGCEVAHSVEEVFEL------CKNEEEIFIFGGAQIY--DL 104
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVTYV 256
P D ++ITKI + E DTF P +D++ +++ + + L + +++ +V
Sbjct: 105 FLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHV 157
>pdb|1ZDR|A Chain A, Dhfr From Bacillus Stearothermophilus
pdb|1ZDR|B Chain B, Dhfr From Bacillus Stearothermophilus
Length = 164
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 22/176 (12%)
Query: 84 VVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPL 143
+VA + IGKD +LPW+LP+DL +FK++TM +A+VMGRKT+E+I RPL
Sbjct: 5 IVAMDENRVIGKDNRLPWHLPADLAYFKRVTMG-------HAIVMGRKTFEAIG---RPL 54
Query: 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203
PGR NVV+T + SF E C +H +LE + + S ++VF+IGG ++ R +
Sbjct: 55 PGRDNVVVTGNRSF------RPEGCLVLH-SLEEVKQ-WIASRADEVFIIGGAELFRATM 106
Query: 204 NAPECDAIHITKIETSIECDTFIPAIDLSLFQ-QRYSSQPLVENN-IQFSFVTYVR 257
P D +++TKI S DTF P I ++ Y+ E N + +F+ Y R
Sbjct: 107 --PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYTPGGKDEKNPYEHAFIIYER 160
>pdb|3IA4|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|C Chain C, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA4|D Chain D, Moritella Profunda Dihydrofolate Reductase (Dhfr) In
Complex With Nadph And Methotrexate (Mtx)
pdb|3IA5|A Chain A, Moritella Profunda Dihydrofolate Reductase (Dhfr)
pdb|3IA5|B Chain B, Moritella Profunda Dihydrofolate Reductase (Dhfr)
Length = 162
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 37/185 (20%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A ++ IG D K+PW+LP++L+ FK+ T+ GK +VMGR T+ESI RP
Sbjct: 5 MIAALANNRVIGLDNKMPWHLPAELQLFKRATL-----GK--PIVMGRNTFESIG---RP 54
Query: 143 LPGRLNVVLTHSGSFN------IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGG 196
LPGRLN+VL+ + +A+LE+ + +E++ +IGG
Sbjct: 55 LPGRLNIVLSRQTDYQPEGVTVVATLEDAVVA---------------AGDVEELMIIGGA 99
Query: 197 QILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ----QRYSSQPLVENNIQFSF 252
I + L A D +++T IE + E DT+ P + +Q + Y++ +N +FS
Sbjct: 100 TIYNQCLAA--ADRLYLTHIELTTEGDTWFPDYEQYNWQEIEHESYAADDKNPHNYRFSL 157
Query: 253 VTYVR 257
+ V+
Sbjct: 158 LERVK 162
>pdb|2ZZA|A Chain A, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
pdb|2ZZA|B Chain B, Moritella Profunda Dihydrofolate Reductase Complex With
Nadp+ And Folate
Length = 162
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 37/185 (20%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A ++ IG D K+PW+LP++L+ FK+ T+ GK +VMGR T+ESI RP
Sbjct: 5 MIAALANNRVIGLDNKMPWHLPAELQLFKRATL-----GK--PIVMGRNTFESIG---RP 54
Query: 143 LPGRLNVVLTHSGSFN------IASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGG 196
LPGRLN+VL+ + +A+LE+ + +E++ +IGG
Sbjct: 55 LPGRLNIVLSRQTDYQPEGVTVVATLEDAVVA---------------AGDVEELMIIGGA 99
Query: 197 QILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ----QRYSSQPLVENNIQFSF 252
I + L A D +++T IE + E DT+ P + +Q + Y++ +N +FS
Sbjct: 100 TIYNQCLAA--ADRLYLTHIELTTEGDTWFPDYEQYNWQEIEHESYAADDKNPHNYRFSL 157
Query: 253 VTYVR 257
+ V+
Sbjct: 158 LERVK 162
>pdb|3LG4|A Chain A, Staphylococcus Aureus V31y, F92i Mutant Dihydrofolate
Reductase Complexed With Nadph And
5-[(3s)-3-(5-Methoxy-2',6'-Dimethylbiphenyl-
3-Yl)but-1-Yn-1-Yl]-6-Methylpyrimidine-2,4-Diamine
pdb|3LG4|B Chain B, Staphylococcus Aureus V31y, F92i Mutant Dihydrofolate
Reductase Complexed With Nadph And
5-[(3s)-3-(5-Methoxy-2',6'-Dimethylbiphenyl-
3-Yl)but-1-Yn-1-Yl]-6-Methylpyrimidine-2,4-Diamine
Length = 168
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK +K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHYKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+IGG + E
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIIGGQTLFEEM 102
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 103 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 157
>pdb|2D0K|A Chain A, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
pdb|2D0K|B Chain B, Methionine-Free Mutant Of Escherichia Coli Dihydrofolate
Reductase
Length = 159
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + LPWNLP+DL +FK+ T++ V+ GR TWESI RP
Sbjct: 4 LIAALAVDRVIGNENALPWNLPADLAWFKRNTLN-------KPVIYGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ + P ++FVIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAAAGDVP------EIFVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS--QPLVENNIQFSF 252
L P+ +++T I+ +E DT P + ++ +S +N+ +SF
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYSF 153
>pdb|4DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|4DFR|B Chain B, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
pdb|1TDR|A Chain A, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
pdb|1TDR|B Chain B, Expression, Characterization, And Crystallographic
Analysis Of Telluromethionyl Dihydrofolate Reductase
Length = 159
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|1DDS|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDS|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate
pdb|1DDR|A Chain A, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|1DDR|B Chain B, Molecule: Dihydrofolate Reductase (E.C.1.5.1.3) Complexed
With Methotrexate And Urea
pdb|3DAU|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Escherichia Coli Dihydrofolate Reductase
pdb|3K74|A Chain A, Disruption Of Protein Dynamics By An Allosteric Effector
Antibody
Length = 159
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T++ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLN-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|2INQ|B Chain B, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
Length = 159
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|3DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|3DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|1DYH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYH|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYI|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1DYJ|B Chain B, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1RB2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB2|B Chain B, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RB3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RB3|B Chain B, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RD7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RD7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|A Chain A, Dihydrofolate Reductase Complexed With Folate
pdb|1RE7|B Chain B, Dihydrofolate Reductase Complexed With Folate
pdb|1JOL|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1JOL|B Chain B, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|2ANO|A Chain A, Crystal Structure Of E.Coli Dihydrofolate Reductase In
Complex With Nadph And The Inhibitor Ms-Sh08-17
pdb|2ANQ|A Chain A, Crystal Structure Of E.Coli Dhfr In Complex With Nadph And
The Inhibitor Compound 10a.
pdb|2INQ|A Chain A, Neutron Crystal Structure Of Escherichia Coli
Dihydrofolate Reductase Bound To The Anti-Cancer Drug,
Methotrexate
pdb|1DRE|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1DRH|A Chain A, Isomorphous Crystal Structures Of Escherichia Coli
Dihydrofolate Reductase Complexed With Folate, 5-
Deazafolate And 5,10-Dideazatetrahydrofolate:
Mechanistic Implications
pdb|1JOM|A Chain A, The Crystal Structure Of The Binary Complex Between
Folinic Acid (leucovorin) And E. Coli Dihydrofolate
Reductase
pdb|1RA1|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Reduced Form)
pdb|1RA2|A Chain A, Dihydrofolate Reductase Complexed With Folate And
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|1RA3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (oxidized
Form)
pdb|1RA8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2-
Monophosphoadenosine 5'-diphosphoribose
pdb|1RA9|A Chain A, Dihydrofolate Reductase Complexed With Nicotinamide
Adenine Dinucleotide Phosphate (Oxidized Form)
pdb|1RC4|A Chain A, Dihydrofolate Reductase Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Oxidized Form)
pdb|1RF7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With
Dihydrofolate
pdb|1RG7|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate
pdb|1RH3|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate And
Nicotinamide Adenine Dinucleotide Phosphate (Reduced
Form)
pdb|1RX1|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (reduced
Form)
pdb|1RX2|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With With
Folate And Nicotinamide Adenine Dinucleotide Phosphate
(Oxidized Form)
pdb|1RX3|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Methotrexate And Nicotinamide Adenine Dinucleotide
Phosphate (Reduced Form)
pdb|1RX4|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And 2'-monophosphoadenosine 5'-
Diphosphoribose
pdb|1RX5|A Chain A, Dihydrofolate Reductase (e.c.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate
pdb|1RX6|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With 5,10-
Dideazatetrahydrofolate And Nicotinamide Adenine
Dinucleotide Phosphate (Reduced Form)
pdb|1RX7|A Chain A, Structure Of Dihydrofolate Reductase Complexed With Folate
pdb|1RX8|A Chain A, Dihydrofolate Reductase Complexed With Folate And 2'-
Monophosphoadenosine 5'-Diphosphoribose
pdb|1RX9|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complexed With
Nicotinamide Adenine Dinucleotide Phosphate (Oxidized
Form)
pdb|5DFR|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|6DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|7DFR|A Chain A, Crystal Structures Of Escherichia Coli Dihydrofolate
Reductase. The Nadp+ Holoenzyme And The Folate(Dot)nadp+
Ternary Complex. Substrate Binding And A Model For The
Transition State
pdb|3KFY|A Chain A, Dynamic Switching And Partial Occupancies Of A Small
Molecule Inhibitor Complex Of Dhfr
pdb|3OCH|A Chain A, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3OCH|B Chain B, Chemically Self-Assembled Antibody Nanorings (Csans):
Design And Characterization Of An Anti-Cd3 Igm
Biomimetic
pdb|3QL3|A Chain A, Re-Refined Coordinates For Pdb Entry 1rx2
pdb|3QYL|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3QYO|A Chain A, Sensitivity Of Receptor Internal Motions To Ligand Binding
Affinity And Kinetic Off-Rate
pdb|3R33|A Chain A, Evidence For Dynamic Motion In Proteins As A Mechanism For
Ligand Dissociation
Length = 159
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 92 GIGKDGKLPWNLPS-DLKFF--------------------KQLTMSTSD-----PGKR-- 123
G+G G LPW S D+K+F K L T D P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR TWESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTTWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239
+ Y K F+IGG + +E L I+ T+I ++ ECD F P I+ + +Q
Sbjct: 155 KLNY----YKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 240 SQPLVENNIQFSFVTYVRVGN 260
S NN F+ Y + N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNN 231
>pdb|2W9S|A Chain A, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|B Chain B, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|C Chain C, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|D Chain D, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|E Chain E, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9S|F Chain F, Staphylococcus Aureus S1:dhfr In Complex With Trimethoprim
pdb|2W9T|A Chain A, Staphylococcus Aureus S1:dhfr
pdb|2W9T|B Chain B, Staphylococcus Aureus S1:dhfr
Length = 161
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++VA IG +LPW+LP+DLK KQLT N +VM RKT+ESI +P
Sbjct: 5 IIVAHDKQRVIGYQNQLPWHLPNDLKHIKQLTTG-------NTLVMARKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT+ SF+ E V++ S+ EL VF+ GGQ L EA
Sbjct: 55 LPNRRNVVLTNQASFH---HEGVDVINSLDEIKELSGH---------VFIF-GGQTLYEA 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
+ + D ++IT I+ + DTF P ++ S + ++ N I +F+ VR
Sbjct: 102 M-IDQVDDMYITVIDGKFQGDTFFPPYTFEDWEVESSVEGQLDEKNTIPHTFLHLVR 157
>pdb|1J3J|A Chain A, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|B Chain B, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
Length = 280
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLTMSTSD-------------------------PGKR-- 123
G+G G LPW S D+K+F+ +T ++ P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239
+ Y K F+IGG + +E L I+ T+I ++ ECD F P I+ + +Q
Sbjct: 155 KLNY----YKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 240 SQPLVENNIQFSFVTYVRVGN 260
S NN F+ Y + N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNN 231
>pdb|1J3I|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|3DGA|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 280
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 92 GIGKDGKLPWNLPS-DLKFF--------------------KQLTMSTSD-----PGKR-- 123
G+G G LPW S D+K+F K L T D P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR +WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTSWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239
+ Y K F+IGG + +E L I+ T+I ++ ECD F P I+ + +Q
Sbjct: 155 KLNY----YKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 240 SQPLVENNIQFSFVTYVRVGN 260
S NN F+ Y + N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNN 231
>pdb|1DRA|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRA|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP++L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPAELAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 92 GIGKDGKLPWNLPS-DLKFF--------------------KQLTMSTSD-----PGKR-- 123
G+G G LPW S D+K+F K L T D P +
Sbjct: 39 GLGNKGVLPWKCNSLDMKYFCAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR +WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTSWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239
+ Y K F+IGG + +E L I+ T+I ++ ECD F P I+ + +Q
Sbjct: 155 KLNY----YKCFIIGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 240 SQPLVENNIQFSFVTYVRVGN 260
S NN F+ Y + N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNN 231
>pdb|3M08|A Chain A, Wild Type Dihydrofolate Reductase From Staphylococcus
Aureus With Inhibitor Rab1
Length = 161
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|4FGG|A Chain A, S. Aureus Dihydrofolate Reductase Co-crystallized With
Propyl-dap Isobutenyl-dihydrophthalazine Inhibitor
pdb|4FGH|A Chain A, S. Aureus Dihydrofolate Reductase Co-crystallized With
Ethyl-dap Isobutenyl-dihydrophthalazine Inhibitor
Length = 163
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 102
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 103 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 157
>pdb|3SQY|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRQ|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRR|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRS|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRU|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
pdb|3SRW|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 102
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 103 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 157
>pdb|3FYV|X Chain X, Staph. Aureus Dhfr Complexed With Nadph And Ar-102
pdb|3FYW|X Chain X, Staph. Aureus Dhfr Complexed With Nadph And Ar-101
pdb|3FRD|X Chain X, S. Aureus Dhfr Complexed With Nadph And Folate
pdb|3FRE|X Chain X, S. Aureus Dhfr Complexed With Nadph And Tmp
pdb|3FRF|X Chain X, S. Aureus Dhfr Complexed With Nadph And Iclaprim
Length = 158
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|3F0B|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-Phenylphenyl)
But-1-Ynyl]-6-Methylpyrimidine
pdb|3FQ0|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-
1-Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3FQC|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3,4,5-Trimethoxyphenyl)
Pent-1-Ynyl]-6-Methylpyrimidine (Ucp115a)
pdb|3FQC|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3,4,5-Trimethoxyphenyl)
Pent-1-Ynyl]-6-Methylpyrimidine (Ucp115a)
pdb|3FQZ|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-4-Phenylphenyl)
But-1-Ynyl]-6-Methylpyrimidine
pdb|3F0Q|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(2,
6-Dimethylphenyl)phenyl)but-1-Ynyl]- 6-Methylpyrimidine
pdb|3F0S|X Chain X, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-5-(3,5-
Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
Length = 157
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|2W9G|A Chain A, Wild-Type Staphylococcus Aureus Dhfr In Complex With Nadph
And Trimethoprim
pdb|2W9H|A Chain A, Wild-Type Staphylococcus Aureus Dhfr In Complex With
Trimethoprim
Length = 159
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 5 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 55 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 102
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 103 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 157
>pdb|3SGY|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-[(3s)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3SGY|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-[(3s)-3-[3-Methoxy-5-(Pyridin-4-Yl)phenyl]but-
1-Yn-1- Yl]pyrimidine-2,4-Diamine (Ucp1006)
pdb|3SH2|A Chain A, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-(3-(4-Methoxybiphenyl-3-Yl)prop-1-
Ynyl)pyrimidine-2,4- Diamine (Ucp120j)
pdb|3SH2|B Chain B, Staphylococcus Aureus Dihydrofolate Reductase Complexed
With Nadph And
6-Ethyl-5-(3-(4-Methoxybiphenyl-3-Yl)prop-1-
Ynyl)pyrimidine-2,4- Diamine (Ucp120j)
Length = 167
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|3SR5|X Chain X, S. Aureus Dihydrofolate Reductase Complexed With Novel
7-Aryl-2,4- Diaminoquinazolines
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLFEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|1J3K|A Chain A, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|B Chain B, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
Length = 280
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLTMSTSD-------------------------PGKR-- 123
G+G G LPW S D+K+F+ +T ++ P +
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239
+ Y K F++GG + +E L I+ T+I ++ ECD F P I+ + +Q
Sbjct: 155 KLNY----YKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 240 SQPLVENNIQFSFVTYVRVGN 260
S NN F+ Y + N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNN 231
>pdb|3M09|A Chain A, F98y Tmp-Resistant Dihydrofolate Reductase From
Staphylococcus Aureus With Inhibitor Rab1
Length = 161
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLYEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|3FY8|X Chain X, Crystal Structure Of Staph. Aureus Dhfr Complexed With
Nadph And Ar-101
pdb|3FY9|X Chain X, Staph. Aureus Dhfr F98y Complexed With Ar-102
pdb|3FRA|X Chain X, Staphylococcus Aureus F98y Dhfr Complexed With Iclaprim
pdb|3FRB|X Chain X, S. Aureus F98y Dhfr Complexed With Tmp
Length = 158
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLYEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|3F0U|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-5-
Phenylphenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3FQF|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3,4,5-
Trimethoxyphenyl)pent-1-Ynyl]-6-Methylpyrimidine
(Ucp115a)
pdb|3FQO|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl]-6-Ethylpyrimidine (Ucp120b)
pdb|3FQV|A Chain A, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-[3-(3-Methoxy-4-
Phenylphenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3F0V|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(2,
6-Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
pdb|3F0X|X Chain X, Staphylococcus Aureus F98y Mutant Dihydrofolate Reductase
Complexed With Nadph And
2,4-Diamino-5-[3-(3-Methoxy-5-(3,
5-Dimethylphenyl)phenyl)but-1-Ynyl]-6-Methylpyrimidine
Length = 157
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLYEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|1DHI|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHI|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+ L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPASLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|2W3V|A Chain A, Mycobacterium Avium Dihydrofolate Reductase Complexed With
Nadph And Trimethoprim
pdb|2W3W|A Chain A, Mycobacterium Avium Dihydrofolate Reductase Complexed With
Nadph And A Lipophilic Antifolate Selective For M. Avium
Dhfr, 6-((2,5-diethoxyphenyl)aminomethyl)-2,4-diamino-5-
Methylpyrido(2,3-d)pyrimidine (sri-8686)
Length = 167
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IG+ G +PW++P DL FK++TM + V+MGR+TWES+ RPLPGR NVV++
Sbjct: 18 IGRGGDIPWSVPEDLTRFKEVTMG-------HTVIMGRRTWESLPAKVRPLPGRRNVVVS 70
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL-NAPECDAI 211
F E + S+ AL Y S +VIGG QI AL +A C+
Sbjct: 71 RRPDF---VAEGARVAGSLEAALA------YAGSDPAPWVIGGAQIYLLALPHATRCEVT 121
Query: 212 HITKIETSIECDTFIPAIDLSLFQQRYSSQPLV-ENNIQFSFVTYVR 257
I + D PA+D S + + + L + +++ F +Y R
Sbjct: 122 EIEIDLRRDDDDALAPALDDSWVGE--TGEWLASRSGLRYRFHSYRR 166
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 40/201 (19%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLTMSTSD-------------------------PGKR-- 123
G+G G LPW S D+K+F+ +T ++ P +
Sbjct: 39 GLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKL 98
Query: 124 -NAVVMGRKTWESISPLYRPLPGRLNVVLTHS---GSFNIASLENVEICRSIHLALELLA 179
N VVMGR WESI ++PL R+NV+L+ + F+ E+V I + + LL
Sbjct: 99 QNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFD----EDVYIINKVEDLIVLLG 154
Query: 180 EPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239
+ Y K F++GG + +E L I+ T+I ++ ECD F P I+ + +Q
Sbjct: 155 KLNY----YKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV 210
Query: 240 SQPLVENNIQFSFVTYVRVGN 260
S NN F+ Y + N
Sbjct: 211 SDVYTSNNTTLDFIIYKKTNN 231
>pdb|1DHJ|A Chain A, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
pdb|1DHJ|B Chain B, Long-Range Structural Effects In A Second-Site Revertant
Of A Mutant Dihydrofolate Reductase
Length = 159
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 22/145 (15%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+ L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPASLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIP 227
L P+ +++T I+ +E DT P
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFP 126
>pdb|3TQ8|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Trimethoprim
pdb|3TQ9|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Methotrexate
pdb|3TQA|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Nadph
pdb|3TQB|A Chain A, Structure Of The Dihydrofolate Reductase (Fola) From
Coxiella Burnetii In Complex With Folate
Length = 178
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 27/185 (14%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A + IG++ +LPW+LP+DL FK +T+ GK +VMGR+T++SI +P
Sbjct: 5 LIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-----GK--PIVMGRRTFDSIG---KP 54
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R N+V+T + I E +I S+ AL L + P +V +IGG +I +EA
Sbjct: 55 LPHRRNIVITQQKNLII---EGCDIFYSLDDALSALTKEP------EVIIIGGARIFKEA 105
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE----NNIQFSFVTYVRV 258
L P+ D + +T I S E D + P + + + +SQ E N F F+ R+
Sbjct: 106 L--PKADKMILTIINHSFEGDVYFPEWNDK--EWKITSQIKHERDEKNPYPFQFLELRRL 161
Query: 259 GNTSF 263
N F
Sbjct: 162 ENLYF 166
>pdb|3I8A|X Chain X, Staphylococcus Aureus H30n, F98y Dihydrofolate Reductase
Complexed With Nadph And 2,4-Diamino-5-(3-(2,5-
Dimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 157
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 85 VAATHDMG--IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
+ HD+ IG + +LPW+LP+DLK K+L+ + +VMGRKT+ESI +P
Sbjct: 4 ILVAHDLQRVIGFENQLPWHLPNDLKNVKKLSTG-------HTLVMGRKTFESIG---KP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LP R NVVLT SFN+ E V++ SI +L VF+ GG + E
Sbjct: 54 LPNRRNVVLTSDTSFNV---EGVDVIHSIEDIYQLPGH---------VFIFGGQTLYEEM 101
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVE--NNIQFSFVTYVR 257
++ + D ++IT IE DTF P ++ S + ++ N I +F+ +R
Sbjct: 102 ID--KVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIR 156
>pdb|3Q1H|A Chain A, Crystal Structure Of Dihydrofolate Reductase From Yersinia
Pestis
Length = 163
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PW+LP+DL +FK+ T++ V+MGRKT+ESI RP
Sbjct: 8 LIAALAADRVIGMENAMPWHLPADLAWFKRNTLNKP-------VIMGRKTFESIG---RP 57
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGRLN+V+ S + E V SI AL + + E+V V+GGG++ ++
Sbjct: 58 LPGRLNIVI----SSQPGTDERVTWAASIEEAL------AFAGNAEEVMVMGGGRVYKQF 107
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L+ + +++T I+ + DT P + ++ +S
Sbjct: 108 LD--RANRMYLTHIDAEVGGDTHFPDYEPDEWESVFSE 143
>pdb|2DRC|A Chain A, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
pdb|2DRC|B Chain B, Investigation Of The Functional Role Of Tryptophan-22 In
Escherichia Coli Dihydrofolate Reductase By
Site-Directed Mutagenesis
Length = 159
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +P+NLP+DL +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPFNLPADLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|1DRB|A Chain A, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
pdb|1DRB|B Chain B, Crystal Structure Of Unliganded Escherichia Coli
Dihydrofolate Reductase. Ligand-Induced Conformational
Changes And Cooperativity In Binding
Length = 159
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 22/158 (13%)
Query: 83 VVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
++ A D IG + +PWNLP+ L +FK+ T+ V+MGR TWESI RP
Sbjct: 4 LIAALAVDRVIGMENAMPWNLPACLAWFKRNTLD-------KPVIMGRHTWESIG---RP 53
Query: 143 LPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREA 202
LPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 LPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQF 103
Query: 203 LNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 L--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139
>pdb|1DF7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Methotrexate
pdb|1DG5|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And Trimethoprim
pdb|1DG7|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph And 4-Bromo Wr99210
pdb|1DG8|A Chain A, Dihydrofolate Reductase Of Mycobacterium Tuberculosis
Complexed With Nadph
Length = 159
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 25/141 (17%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IG+ G +PW LP D F+++TM + +VMGR+TW+S+ RPLPGR NVVL+
Sbjct: 14 IGRGGDIPWRLPEDQAHFREITMG-------HTIVMGRRTWDSLPAKVRPLPGRRNVVLS 66
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIH 212
F +AS E+ S+ E L P + +VIGGGQ+ AL P
Sbjct: 67 RQADF-MAS--GAEVVGSLE---EALTSP-------ETWVIGGGQVY--ALALPYATRCE 111
Query: 213 ITKIETSI---ECDTFIPAID 230
+T+++ + D P +D
Sbjct: 112 VTEVDIGLPREAGDALAPVLD 132
>pdb|3QL0|A Chain A, Crystal Structure Of N23ppS148A MUTANT OF E. COLI
DIHYDROFOLATE Reductase
Length = 160
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 23/159 (14%)
Query: 83 VVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYR 141
++ A D IG + +PW LP+DL +FK+ T++ V+MGR TWESI R
Sbjct: 4 LIAALAVDRVIGMENAMPWPPLPADLAWFKRNTLN-------KPVIMGRHTWESIG---R 53
Query: 142 PLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILRE 201
PLPGR N++L S + + V +S+ A+ C + ++ VIGGG++ +
Sbjct: 54 PLPGRKNIIL----SSQPGTDDRVTWVKSVDEAIAA------CGDVPEIMVIGGGRVYEQ 103
Query: 202 ALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240
L P+ +++T I+ +E DT P + ++ +S
Sbjct: 104 FL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 140
>pdb|2BLA|A Chain A, Sp21 Double Mutant P. Vivax Dihydrofolate Reductase In
Complex With Pyrimethamine
pdb|2BLC|A Chain A, Sp21 Double Mutant P. Vivax Dihydrofolate Reductase In
Complex With Des-Chloropyrimethamine
Length = 238
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 44/206 (21%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLT--------------------MSTSDPGK-------- 122
G+G G LPW S D+K+F+ +T M S G
Sbjct: 38 GLGNKGTLPWKCNSVDMKYFRSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDN 97
Query: 123 ----------RNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIH 172
+N VVMGR WESI Y+PLP R+NVVL+ + + E+V+ I
Sbjct: 98 THGGDNADKLQNVVVMGRSNWESIPKQYKPLPNRINVVLSKT-----LTKEDVKEKVFII 152
Query: 173 LALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLS 232
+++ L K F+IGG Q+ RE L+ I+ T+I + CD F P D S
Sbjct: 153 DSIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDES 212
Query: 233 LFQQRYSSQPLVENNIQFSFVTYVRV 258
F+ S+ F+ Y +V
Sbjct: 213 EFRVTSVSEVYNSKGTTLDFLVYSKV 238
>pdb|2BL9|A Chain A, X-Ray Crystal Structure Of Plasmodium Vivax Dihydrofolate
Reductase In Complex With Pyrimethamine And Its
Derivative
pdb|2BLB|A Chain A, X-Ray Crystal Structure Of Plasmodium Vivax Dihydrofolate
Reductase In Complex With Pyrimethamine And Its
Derivative
Length = 238
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 44/206 (21%)
Query: 92 GIGKDGKLPWNLPS-DLKFFKQLT--------------------MSTSDPGK-------- 122
G+G G LPW S D+K+F +T M S G
Sbjct: 38 GLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDN 97
Query: 123 ----------RNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIH 172
+N VVMGR +WESI Y+PLP R+NVVL+ + + E+V+ I
Sbjct: 98 THGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKT-----LTKEDVKEKVFII 152
Query: 173 LALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLS 232
+++ L K F+IGG Q+ RE L+ I+ T+I + CD F P D S
Sbjct: 153 DSIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDES 212
Query: 233 LFQQRYSSQPLVENNIQFSFVTYVRV 258
F+ S+ F+ Y +V
Sbjct: 213 EFRVTSVSEVYNSKGTTLDFLVYSKV 238
>pdb|2CIG|A Chain A, Dihydrofolate Reductase From Mycobacterium Tuberculosis
Inhibited By The Acyclic 4r Isomer Of Inh-Nadp A
Derivative Of The Prodrug Isoniazid
Length = 159
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 25/141 (17%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IG+ G +PW LP D F+++TM + +VMGR+ W+S+ RPLPGR NVVL+
Sbjct: 14 IGRGGDIPWRLPEDQAHFREITMG-------HTIVMGRRVWDSLPAKVRPLPGRRNVVLS 66
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIH 212
F +AS E+ S+ E L P + +VIGGGQ+ AL P
Sbjct: 67 RQADF-MAS--GAEVVGSLE---EALTSP-------ETWVIGGGQVY--ALALPYATRCE 111
Query: 213 ITKIETSI---ECDTFIPAID 230
+T+++ + D P +D
Sbjct: 112 VTEVDIGLPREAGDALAPVLD 132
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 21/155 (13%)
Query: 83 VVVAATHDMG-IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYR 141
V + A + G IGKD +LPW LP++L+ FK+ T++ +A++MGR T++ + R
Sbjct: 26 VAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLN-------HAILMGRVTFDGMG--RR 76
Query: 142 PLPGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILRE 201
LP R ++LT + I + +S+ L+ Y + + ++++GG QI +
Sbjct: 77 LLPKRETLILTRNPEEKIDGVATFHDVQSV---LDW-----YSAQEKNLYIVGGKQIFQA 128
Query: 202 ALNAPECDAIHITKIETSIECDTFIPA-IDLSLFQ 235
P D + +T I +E DT+ PA DLSLF+
Sbjct: 129 F--EPYLDEVIVTHIHARVEGDTYFPAEFDLSLFE 161
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 83 VVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLT------MSTSDPGKRNAVVMGRKTWES 135
+ VA + IG ++PW ++ D +F + T + + +P +N V+ GRKT+ES
Sbjct: 13 IFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES 72
Query: 136 ISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLAL-ELLAEPPYCSSIEKVFVIG 194
I PL R+NV+L+ + + + + + A+ +L A P+ K+F++G
Sbjct: 73 IPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRANVPH----NKIFILG 124
Query: 195 GGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVT 254
G + +E L+ CD I++T++ DT+ P I F+ S + + + FV
Sbjct: 125 GSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIP-DTFEITAISPTFSTDFVSYDFVI 183
Query: 255 YVR 257
Y R
Sbjct: 184 YER 186
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 83 VVVAATHDMGIGKDGKLPW-NLPSDLKFFKQLT------MSTSDPGKRNAVVMGRKTWES 135
+ VA + IG ++PW ++ D +F + T + + +P +N V+ GRKT+ES
Sbjct: 17 IFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES 76
Query: 136 ISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHLAL-ELLAEPPYCSSIEKVFVIG 194
I PL R+NV+L+ + + + + + A+ +L A P+ K+F++G
Sbjct: 77 IPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRANVPH----NKIFILG 128
Query: 195 GGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENNIQFSFVT 254
G + +E L+ CD I++T++ DT+ P I F+ S + + + FV
Sbjct: 129 GSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIP-DTFEITAISPTFSTDFVSYDFVI 187
Query: 255 YVR 257
Y R
Sbjct: 188 YER 190
>pdb|3DFR|A Chain A, Crystal Structures Of Escherichia Coli And Lactobacillus
Casei Dihydrofolate Reductase Refined At 1.7 Angstroms
Resolution. I. General Features And Binding Of
Methotrexate
Length = 162
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 93 IGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLT 152
IGKDG LPW+LP DL +F+ T+ GK +V+GR+T+ES RPLP R NVVLT
Sbjct: 13 IGKDGHLPWHLPDDLHYFRAQTV-----GK--IMVVGRRTYESFPK--RPLPERTNVVLT 63
Query: 153 HSGSFNIASLENVEICRSIHLALELLAEPPYCSS-IEKVFVIGGGQILREALNAPECDAI 211
H + + + ++ A Y +++ VI GG + A + D +
Sbjct: 64 HQEDYQ---------AQGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFK-DDVDTL 113
Query: 212 HITKIETSIECDTFIPAIDLSLFQQRYSSQPLVENN 247
+T++ S E DT + ++ F + SS+ + + N
Sbjct: 114 LVTRLAGSFEGDTKMIPLNWDDF-TKVSSRTVEDTN 148
>pdb|1LUD|A Chain A, Solution Structure Of Dihydrofolate Reductase Complexed
With Trimethoprim And Nadph, 24 Structures
pdb|2HM9|A Chain A, Solution Structure Of Dihydrofolate Reductase Complexed
With Trimethoprim, 33 Structures
pdb|2HQP|A Chain A, Solution Structure Of L.Casei Dihydrofolate Reductase
Complexed With Nadph, 32 Structures
pdb|1AO8|A Chain A, Dihydrofolate Reductase Complexed With Methotrexate, Nmr,
21 Structures
pdb|1BZF|A Chain A, Nmr Solution Structure And Dynamics Of The Complex Of
Lactobacillus Casei Dihydrofolate Reductase With The New
Lipophilic Antifolate Drug Trimetrexate, 22 Structures
pdb|1DIS|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complex With
Brodimoprim-4,6-Dicarboxylate
pdb|1DIU|A Chain A, Dihydrofolate Reductase (E.C.1.5.1.3) Complex With
Brodimoprim-4,6-Dicarboxylate
pdb|2L28|A Chain A, Solution Structure Of Lactobacillus Casei Dihydrofolate
Reductase Apo- Form, 25 Conformers
pdb|2LF1|A Chain A, Solution Structure Of L. Casei Dihydrofolate Reductase
Complexed With Nadph, 30 Structures
Length = 162
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 86 AATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPG 145
A D IGKDG LPW+LP DL +F+ T+ +V+GR+T+ES RPLP
Sbjct: 6 AQDRDGLIGKDGHLPWHLPDDLHYFRAQTVG-------KIMVVGRRTYESFPK--RPLPE 56
Query: 146 RLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNA 205
R NVVLTH + V ++ + + +++ + GG QI +
Sbjct: 57 RTNVVLTHQEDYQAQGAVVVHDVAAVFAYAKQHPD-------QELVIAGGAQIFTAFKD- 108
Query: 206 PECDAIHITKIETSIECDT 224
+ D + +T++ S E DT
Sbjct: 109 -DVDTLLVTRLAGSFEGDT 126
>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
Length = 162
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 21/154 (13%)
Query: 84 VVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
V A + IG+DG+LPW ++P+D K ++ + DP VV+GR T+ES +
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYR--SRVADDP-----VVLGRTTFES---MRDD 55
Query: 143 LPGRLNVVLTHSG-SFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILRE 201
LPG +V++ S SF S++ S+ A+++ A E +VIGG I
Sbjct: 56 LPGSAQIVMSRSERSF---SVDTAHRAASVEEAVDIAA----SLDAETAYVIGGAAIY-- 106
Query: 202 ALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ 235
AL P D + ++++ E DT+ P D + ++
Sbjct: 107 ALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWE 140
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 21/154 (13%)
Query: 84 VVAATHDMGIGKDGKLPW-NLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRP 142
V A + IG+DG+LPW ++P+D K ++ + DP VV+GR T+ES +
Sbjct: 6 VAALAENRVIGRDGELPWPSIPADKKQYR--SRIADDP-----VVLGRTTFES---MRDD 55
Query: 143 LPGRLNVVLTHSG-SFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILRE 201
LPG +V++ S SF S++ S+ A+++ A E +VIGG I
Sbjct: 56 LPGSAQIVMSRSERSF---SVDTAHRAASVEEAVDIAA----SLDAETAYVIGGAAIY-- 106
Query: 202 ALNAPECDAIHITKIETSIECDTFIPAIDLSLFQ 235
AL P D + ++++ E DT+ P D + ++
Sbjct: 107 ALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWE 140
>pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
Length = 168
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 101 WNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHS-GSFNI 159
W+ D K F+++T + VVMGR T+E I RPLP RLNVVLT + N
Sbjct: 22 WSSFEDRKNFRKITTEIGN------VVMGRITFEEIG---RPLPERLNVVLTRRPKTSNN 72
Query: 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHIT 214
SL V S ++ L Y E+V VIGG + E L D + +T
Sbjct: 73 PSL--VFFNGSPADVVKFLEGKGY----ERVAVIGGKTVFTEFLREKLVDELFVT 121
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 89 HDMGIGKDGKLP--WNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGR 146
HDM I K +P + LP K +TM KR+A+++ +T E I+ PGR
Sbjct: 37 HDMKITKINAIPLSYRLPEG----KTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHPGR 92
Query: 147 LNVVLT 152
+T
Sbjct: 93 SPGAIT 98
>pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The
Nucleotidyltransferase (Adenylation) Domain Of Human Dna
Ligase Iv
Length = 139
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 130 RKTWESISPLYRPLPGRLNVV 150
RK +E +S ++ P+PGR+ +V
Sbjct: 116 RKRYEILSSIFTPIPGRIEIV 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,102,335
Number of Sequences: 62578
Number of extensions: 274468
Number of successful extensions: 945
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 95
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)