Query 024737
Match_columns 263
No_of_seqs 159 out of 1259
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1324 Dihydrofolate reductas 100.0 9.1E-46 2E-50 316.0 15.4 180 78-257 1-188 (190)
2 PF00186 DHFR_1: Dihydrofolate 100.0 6.4E-45 1.4E-49 310.0 19.0 159 80-257 1-161 (161)
3 PRK10769 folA dihydrofolate re 100.0 2.3E-43 5.1E-48 299.9 18.5 157 80-258 1-159 (159)
4 COG0262 FolA Dihydrofolate red 100.0 2.9E-40 6.3E-45 282.6 18.7 165 80-258 1-167 (167)
5 PTZ00164 bifunctional dihydrof 100.0 1.6E-39 3.5E-44 319.1 20.7 178 78-259 7-190 (514)
6 cd00209 DHFR Dihydrofolate red 100.0 3E-34 6.4E-39 242.5 18.7 158 81-256 1-158 (158)
7 PRK00478 scpA segregation and 100.0 2.7E-34 5.9E-39 282.0 18.1 156 80-260 1-156 (505)
8 PF01872 RibD_C: RibD C-termin 99.7 2E-17 4.3E-22 143.4 13.0 150 79-238 1-190 (200)
9 PRK05625 5-amino-6-(5-phosphor 99.6 1.9E-14 4.1E-19 126.9 17.1 140 78-228 2-185 (217)
10 TIGR00227 ribD_Cterm riboflavi 99.6 4.5E-14 9.7E-19 123.9 15.2 140 78-227 2-185 (216)
11 TIGR00326 eubact_ribD riboflav 99.5 6.6E-13 1.4E-17 125.2 12.6 135 78-222 140-308 (344)
12 PRK14059 hypothetical protein; 99.2 8.6E-10 1.9E-14 100.3 18.7 167 78-258 30-250 (251)
13 TIGR01508 rib_reduct_arch 2,5- 99.0 1.8E-08 4E-13 88.9 17.4 136 80-227 2-180 (210)
14 PRK14719 bifunctional RNAse/5- 98.9 8.1E-08 1.8E-12 91.7 16.2 146 67-222 128-316 (360)
15 PRK10786 ribD bifunctional dia 98.7 3.9E-07 8.5E-12 87.1 15.4 135 78-222 146-328 (367)
16 COG1985 RibD Pyrimidine reduct 98.7 9E-07 1.9E-11 79.2 16.0 141 78-228 3-186 (218)
17 PLN02807 diaminohydroxyphospho 98.2 4.1E-05 8.9E-10 73.8 14.2 131 78-222 175-346 (380)
18 PRK00536 speE spermidine synth 50.4 8.6 0.00019 35.5 1.4 43 186-230 72-118 (262)
19 PF08353 DUF1727: Domain of un 39.3 68 0.0015 25.8 4.9 74 94-194 33-108 (113)
20 PF02476 US2: US2 family; Int 37.6 62 0.0014 26.9 4.4 41 187-227 11-53 (126)
21 PF13344 Hydrolase_6: Haloacid 29.5 47 0.001 25.7 2.4 37 167-206 63-99 (101)
22 PF02571 CbiJ: Precorrin-6x re 29.4 3.4E+02 0.0073 24.7 8.3 70 145-219 93-163 (249)
23 TIGR03609 S_layer_CsaB polysac 28.4 50 0.0011 29.9 2.7 50 144-201 27-78 (298)
24 PRK10444 UMP phosphatase; Prov 26.9 4.3E+02 0.0094 23.7 8.6 36 168-207 67-102 (248)
25 COG2099 CobK Precorrin-6x redu 25.8 3.6E+02 0.0078 25.1 7.7 68 144-218 92-159 (257)
26 PF01344 Kelch_1: Kelch motif; 25.4 39 0.00085 21.6 1.1 12 187-198 11-22 (47)
27 PF06459 RR_TM4-6: Ryanodine R 23.9 37 0.0008 31.7 1.0 21 17-37 160-180 (274)
28 PF01564 Spermine_synth: Sperm 20.9 41 0.00088 30.4 0.6 43 186-228 76-122 (246)
29 PF01973 MAF_flag10: Protein o 20.1 2.9E+02 0.0063 22.9 5.7 56 145-220 24-79 (170)
No 1
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.1e-46 Score=316.03 Aligned_cols=180 Identities=52% Similarity=0.838 Sum_probs=158.9
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCC
Q 024737 78 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSF 157 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~ 157 (263)
|+.+.+++|++.+++||++|+|||++|.||+||+++|+++++|++.++||||||||||+|.+.+||++|.||||||+...
T Consensus 1 ~~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~ 80 (190)
T KOG1324|consen 1 MRLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKE 80 (190)
T ss_pred CceeEEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCCceecCCCCccCceEe
Q 024737 158 NIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQR 237 (263)
Q Consensus 158 ~~~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leGD~fFP~~d~~~f~~~ 237 (263)
+....+++.++++++.|++.|.+.+...+.+.||||||+++|.++|++++||+|++|+|...++||+|||.+|.+.++.|
T Consensus 81 ~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~ 160 (190)
T KOG1324|consen 81 DFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKW 160 (190)
T ss_pred CcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChHHhchh
Confidence 54445678899999999999998866678899999999999999999999999999999999999999999998766655
Q ss_pred eecc--------CceeCcccEEEEEEEE
Q 024737 238 YSSQ--------PLVENNIQFSFVTYVR 257 (263)
Q Consensus 238 ~~~~--------~~~en~~~~~f~~Y~r 257 (263)
.... .++++.+++.+.+|+.
T Consensus 161 ~~~~pv~~~~~~~~~e~~lk~k~~~~e~ 188 (190)
T KOG1324|consen 161 DKLFPVSENGLRVQEETFLKPKSAIFEE 188 (190)
T ss_pred hhcCcccccccchhhhcCccceeecccc
Confidence 3322 2455666666655543
No 2
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=6.4e-45 Score=310.01 Aligned_cols=159 Identities=48% Similarity=0.806 Sum_probs=142.7
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCCCC
Q 024737 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (263)
Q Consensus 80 kIilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~~~ 159 (263)
||.+|+|++.||+||.+|+|||++|+|+++|+++|+ +++||||||||||+|. +|||+|.||||||+....
T Consensus 1 mi~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~-------~~~vIMGrkT~eslp~--~pLp~R~niVlSr~~~~~- 70 (161)
T PF00186_consen 1 MISLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTT-------GNPVIMGRKTFESLPF--RPLPGRINIVLSRNPDYE- 70 (161)
T ss_dssp -EEEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHT-------TCEEEEEHHHHHHSTG--SSBTTSEEEEESSSTTSC-
T ss_pred CEEEEEEECCCCcccCCCccccccHHHHHHHHHccC-------CccEEEeeCchhcCCc--cCCCCCeEEEEEcCcccc-
Confidence 589999999999999999999999999999999998 4999999999999993 799999999999998753
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCCceecCCCCccCceEeee
Q 024737 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239 (263)
Q Consensus 160 ~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leGD~fFP~~d~~~f~~~~~ 239 (263)
.+++.+++|+++|++.++. ..++||||||++||+++| ++||++|||+|+..++||+|||+++.+.|+++.+
T Consensus 71 --~~~~~~~~s~~~al~~~~~-----~~~~i~ViGG~~iy~~~l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~ 141 (161)
T PF00186_consen 71 --PEGVEVVSSLEEALELAKD-----KDEEIFVIGGAEIYEQFL--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSE 141 (161)
T ss_dssp --TTTSEEESSHHHHHHHHTT-----SESEEEEEE-HHHHHHHH--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEE
T ss_pred --cCCceeeCCHHHHHHHhhc-----cCCcEEEECCHHHHHHHH--HhCCeEEEEEEcCccccceECCCCChHHCEEEEE
Confidence 2588899999999996654 368999999999999999 5899999999999999999999999999998766
Q ss_pred ccC--ceeCcccEEEEEEEE
Q 024737 240 SQP--LVENNIQFSFVTYVR 257 (263)
Q Consensus 240 ~~~--~~en~~~~~f~~Y~r 257 (263)
+.. .++|+++|+|.+|+|
T Consensus 142 ~~~~~~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 142 EEHPKDEENGIKYTFVTYER 161 (161)
T ss_dssp EEEEHBEETTSEEEEEEEEE
T ss_pred EecccCCCCCCCEEEEEEEC
Confidence 543 367999999999997
No 3
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=2.3e-43 Score=299.87 Aligned_cols=157 Identities=33% Similarity=0.617 Sum_probs=138.8
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCCCC
Q 024737 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (263)
Q Consensus 80 kIilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~~~ 159 (263)
+|.+|+|++.||+||.+|+|||++|+|++||+++|+ ++++||||||||+++ +|||+|+|||+||+...
T Consensus 1 mi~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~-------~~~vIMGRkTyes~~---~plp~r~~iVlSr~~~~-- 68 (159)
T PRK10769 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIVISSQPGT-- 68 (159)
T ss_pred CEEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhC-------CCeEEEeHHHHHhhh---hhcCCCcEEEECCCCCC--
Confidence 378999999999999999999999999999999998 499999999999997 69999999999998532
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCCceecCCCCccCceEeee
Q 024737 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239 (263)
Q Consensus 160 ~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leGD~fFP~~d~~~f~~~~~ 239 (263)
.+++.++++++++++.+++ .++|||+||+++|+++| ++||+++||+||..++||+|||.++.+.|+++.+
T Consensus 69 --~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~~~l--~~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~ 138 (159)
T PRK10769 69 --DDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYEQFL--PKAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFS 138 (159)
T ss_pred --CCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHHHHH--HHCCEEEEEEECccccCCEECCCCChHHCEEEEE
Confidence 3578888899999986653 36899999999999999 4599999999999999999999999888998754
Q ss_pred ccC--ceeCcccEEEEEEEEc
Q 024737 240 SQP--LVENNIQFSFVTYVRV 258 (263)
Q Consensus 240 ~~~--~~en~~~~~f~~Y~r~ 258 (263)
+.. +++|++.|+|.+|+|+
T Consensus 139 ~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 139 EFHDADEQNSHSYCFEILERR 159 (159)
T ss_pred EeccccCCCCccEEEEEEEeC
Confidence 332 3677889999999984
No 4
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-40 Score=282.58 Aligned_cols=165 Identities=38% Similarity=0.599 Sum_probs=145.5
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCCCC
Q 024737 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (263)
Q Consensus 80 kIilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~~~ 159 (263)
+|++|+|+|+||+||.+|+|||++|+|+++|+++|.+ +.|||||||||+++...+|||+|.|||+||++...
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~~-------~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~~- 72 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTLG-------KPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDLK- 72 (167)
T ss_pred CEEEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhCC-------CCEEEccchhhhccccCCCCCCCeEEEEecCcccc-
Confidence 5899999999999999999999999999999999984 77999999999999655699999999999995443
Q ss_pred CCCCC-eEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCcc-CCceecCCCCccCceEe
Q 024737 160 ASLEN-VEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI-ECDTFIPAIDLSLFQQR 237 (263)
Q Consensus 160 ~~~~~-v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~l-eGD~fFP~~d~~~f~~~ 237 (263)
.++ +.+++|+++|+..+++. .+++|||+||+++|+++|+++++|+++||+||..+ +||+|||..+...|+++
T Consensus 73 --~e~~~~v~~s~~~al~~~~~~----~~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~ 146 (167)
T COG0262 73 --TEGGVEVVDSIEEALLLLLKE----EGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELV 146 (167)
T ss_pred --cCCCEEEeCCHHHHHHHHhhc----CCCeEEEEcCHHHHHHHhccccccEEEEEEeeeeccCCCccCCCCCccceEEe
Confidence 355 88999999999999875 47899999999999999999999999999999999 99999999777889987
Q ss_pred eeccCceeCcccEEEEEEEEc
Q 024737 238 YSSQPLVENNIQFSFVTYVRV 258 (263)
Q Consensus 238 ~~~~~~~en~~~~~f~~Y~r~ 258 (263)
.+....+.+.+.+.|..|+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ 167 (167)
T COG0262 147 SSEDADEKGGYFYTFESYERR 167 (167)
T ss_pred eeeecccCCceeEEEEEeecC
Confidence 654334567778888888763
No 5
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=1.6e-39 Score=319.05 Aligned_cols=178 Identities=43% Similarity=0.704 Sum_probs=155.7
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCC------CCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEE
Q 024737 78 RRPYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMST------SDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVL 151 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~------~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVl 151 (263)
.+++.+|+|++.+|+||.+|+|||++|+||+||+++|+++ ++|+++++|||||||||++|...+|||+|+|||+
T Consensus 7 ~~~i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~rPLp~R~nIVL 86 (514)
T PTZ00164 7 LKDFSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKFRPLKNRINVVL 86 (514)
T ss_pred CCCEEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhccccCCCeEEEE
Confidence 6899999999999999999999999999999999999843 4677899999999999999855579999999999
Q ss_pred cCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCCceecCCCCc
Q 024737 152 THSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDL 231 (263)
Q Consensus 152 Srt~~~~~~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leGD~fFP~~d~ 231 (263)
||++.... ..+++.+++|+++|++.+++.+ +.++|||+||+++|+++|++++||+++||+|+..++||+|||.++.
T Consensus 87 Sr~~~~~~-~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI~~~geGD~~FP~~~~ 162 (514)
T PTZ00164 87 SRTLTEEE-ADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYREALSANLLDKIYLTRVNSEYECDVFFPKIPE 162 (514)
T ss_pred cCCCCccc-CCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHHHHhcCCCCCEEEEEEEEeccccCccCCCCCc
Confidence 99865421 1356888999999999998641 4578999999999999999999999999999877799999999998
Q ss_pred cCceEeeeccCceeCcccEEEEEEEEcC
Q 024737 232 SLFQQRYSSQPLVENNIQFSFVTYVRVG 259 (263)
Q Consensus 232 ~~f~~~~~~~~~~en~~~~~f~~Y~r~~ 259 (263)
+.|+++..++..+++++.|+|.+|+|++
T Consensus 163 ~~~~l~~~s~~~~~~~v~y~f~~y~r~~ 190 (514)
T PTZ00164 163 SFFIVAIVSQTFSTNGTSYDFVIYEKKN 190 (514)
T ss_pred hhcEEEEEEEeccCCCceEEEEEEeccC
Confidence 7898876444556788899999999975
No 6
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=100.00 E-value=3e-34 Score=242.54 Aligned_cols=158 Identities=44% Similarity=0.728 Sum_probs=135.1
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCCCCC
Q 024737 81 YQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIA 160 (263)
Q Consensus 81 IilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~~~~ 160 (263)
|++++|+|+||+||.+|++||++++|+++|++.+. .+++||||||||+++. +|||+|+++|+||++...
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~-------~~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~~-- 69 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTT-------GNPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDYQ-- 69 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHC-------CCeEEEChhhHhhCCC--cCCCCCCEEEEccCCCcC--
Confidence 57999999999999888899999999999998886 5999999999999984 589999999999987543
Q ss_pred CCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCCceecCCCCccCceEeeec
Q 024737 161 SLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYSS 240 (263)
Q Consensus 161 ~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leGD~fFP~~d~~~f~~~~~~ 240 (263)
..+++.++.+++++++.++ . ++++|||+||+++|++++++ +||++|+++|..++||++||..+...|+++.+.
T Consensus 70 ~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~~~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~ 142 (158)
T cd00209 70 DAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYKQALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE 142 (158)
T ss_pred CCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHHHHHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEE
Confidence 2467887789999999998 4 56799999999999999977 999999999999999999998766678886622
Q ss_pred cCceeCcccEEEEEEE
Q 024737 241 QPLVENNIQFSFVTYV 256 (263)
Q Consensus 241 ~~~~en~~~~~f~~Y~ 256 (263)
....+++.+|.|.+|.
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (158)
T cd00209 143 EVFEEDGYSYTFETYE 158 (158)
T ss_pred eecccCCccEEEEEEC
Confidence 2233455789998884
No 7
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=281.98 Aligned_cols=156 Identities=21% Similarity=0.433 Sum_probs=131.7
Q ss_pred cEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCCCC
Q 024737 80 PYQVVVAATHDMGIGKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNI 159 (263)
Q Consensus 80 kIilivAvS~dG~IG~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~~~ 159 (263)
+|++|||++.||+||++|+||||+|+|++||+++|+ +++|||||||||+++ +|+|+|+|||+||+.....
T Consensus 1 mi~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~-------~~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~~ 70 (505)
T PRK00478 1 MIKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTT-------NHTIVMGYNTFQAMN---KILANQANIVISKKHQREL 70 (505)
T ss_pred CEEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhC-------CCeEEEehHHHHhhh---hcCCCCeEEEECCCCcccc
Confidence 488999999999999999999999999999999998 499999999999998 5899999999999864321
Q ss_pred CCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCCceecCCCCccCceEeee
Q 024737 160 ASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIECDTFIPAIDLSLFQQRYS 239 (263)
Q Consensus 160 ~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leGD~fFP~~d~~~f~~~~~ 239 (263)
...+++.+++|++++++.. ++++|||+||+++|++|+ ++||+++||+||..++||++| .++...|+++..
T Consensus 71 ~~~~~v~v~~sl~~~L~~~-------~~~dI~IIGG~~Ly~~~l--~~vDel~lT~Ip~~~g~d~~f-~~~~~~~~Lv~~ 140 (505)
T PRK00478 71 KNNNELFVFNDLKKLLIDF-------SNVDLFIIGGKKTIEQFI--KYADQLIISKLNADYKCDLFV-NLNYDDFSLVQT 140 (505)
T ss_pred CCCCCeEEECCHHHHHHhC-------CCCCEEEEChHHHHHHHH--HhCCEEEEEEeccccCCCCCC-CCChhhheeeee
Confidence 1135788889999997643 235899999999999999 569999999999999999998 556678887643
Q ss_pred ccCceeCcccEEEEEEEEcCC
Q 024737 240 SQPLVENNIQFSFVTYVRVGN 260 (263)
Q Consensus 240 ~~~~~en~~~~~f~~Y~r~~~ 260 (263)
. ....|.+.+|+|+.+
T Consensus 141 ~-----~~~~~v~~~Y~rk~~ 156 (505)
T PRK00478 141 K-----EYDQFVVEYWEKKPN 156 (505)
T ss_pred E-----EcCcEEEEEEEecCC
Confidence 2 222499999999843
No 8
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.74 E-value=2e-17 Score=143.37 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=110.5
Q ss_pred CcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccC---C-CCCC---------
Q 024737 79 RPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISP---L-YRPL--------- 143 (263)
Q Consensus 79 rkIilivAvS~dG~IG-~~G~LpW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~---~-~~pl--------- 143 (263)
|+|++.+|+|+||+|+ .+|...|.. +++..++.++... .+++||||+|++.... . ..+.
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRA 74 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCH
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhc
Confidence 5899999999999995 689999965 4566666666653 6999999999986421 0 0111
Q ss_pred CCCcEEEEcCCCCCCCC-----CCCCe-EEeCC---------------HHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHH
Q 024737 144 PGRLNVVLTHSGSFNIA-----SLENV-EICRS---------------IHLALELLAEPPYCSSIEKVFVIGGGQILREA 202 (263)
Q Consensus 144 p~r~nIVlSrt~~~~~~-----~~~~v-~v~~s---------------ieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~ 202 (263)
++.+.+|+|++...+.. ....+ .++.. +.++++.|++. +.++|+|.||+++..+|
T Consensus 75 ~~p~~vV~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~~~ 150 (200)
T PF01872_consen 75 KQPPKVVVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNGSF 150 (200)
T ss_dssp SSSEEEEEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHHHH
T ss_pred cCCeEEEEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHHHH
Confidence 56789999999753210 01122 23333 99999999987 78999999999999999
Q ss_pred hCCCCcCEEEEEEECCcc-C-CceecCCCCcc--CceEee
Q 024737 203 LNAPECDAIHITKIETSI-E-CDTFIPAIDLS--LFQQRY 238 (263)
Q Consensus 203 L~~~lvDel~LT~I~~~l-e-GD~fFP~~d~~--~f~~~~ 238 (263)
++++++||++|++.|..+ . |.++|+..... .|+++.
T Consensus 151 l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~ 190 (200)
T PF01872_consen 151 LRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVS 190 (200)
T ss_dssp HHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEE
T ss_pred HhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEE
Confidence 999999999999999888 4 78999987653 466654
No 9
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=99.63 E-value=1.9e-14 Score=126.91 Aligned_cols=140 Identities=21% Similarity=0.173 Sum_probs=98.8
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhcc----C-C-----------
Q 024737 78 RRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESIS----P-L----------- 139 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG-~~G~LpW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp----~-~----------- 139 (263)
.+.+++.+|+|+||.|+ .+|.- |.- +++..++.++-.. .+++|||++|++.-- . .
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~ 74 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIR 74 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEE
Confidence 35788999999999996 57777 964 5566666665543 699999999998620 0 0
Q ss_pred ------------CCCCC-CCcEEEEcCCCCCCCC----CCCCeEEe------CCHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 024737 140 ------------YRPLP-GRLNVVLTHSGSFNIA----SLENVEIC------RSIHLALELLAEPPYCSSIEKVFVIGGG 196 (263)
Q Consensus 140 ------------~~plp-~r~nIVlSrt~~~~~~----~~~~v~v~------~sieeai~~l~~~~~~~~~~~I~ViGGa 196 (263)
.+.+. ..+.+|+|+....... ...++.+. .++.++++.|++. +.++|||.||+
T Consensus 75 vVld~~~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 150 (217)
T PRK05625 75 VVVDSSARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGG 150 (217)
T ss_pred EEECCCCCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCH
Confidence 01111 1355566543211000 01234322 3789999999876 78899999999
Q ss_pred HHHHHHhCCCCcCEEEEEEECCccC---CceecCC
Q 024737 197 QILREALNAPECDAIHITKIETSIE---CDTFIPA 228 (263)
Q Consensus 197 ~Iy~~~L~~~lvDel~LT~I~~~le---GD~fFP~ 228 (263)
++..+||+++++||+++++.|..+. |.++|+.
T Consensus 151 ~l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~ 185 (217)
T PRK05625 151 TLIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADG 185 (217)
T ss_pred HHHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCC
Confidence 9999999999999999999999874 7788875
No 10
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=99.58 E-value=4.5e-14 Score=123.92 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=97.9
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhh----ccCC-------CCC--
Q 024737 78 RRPYQVVVAATHDMGIG-KDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWES----ISPL-------YRP-- 142 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG-~~G~LpW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyes----lp~~-------~~p-- 142 (263)
.+.+++.+|+|+||.|+ .+|...|. -+++..++.++... .+++||||+||+. +... ..|
T Consensus 2 rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~l~~r~~~~~~~~~P~~ 75 (216)
T TIGR00227 2 RPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQ------SDAILVGSGTVLADDPRLTVRWVELDELRNPVR 75 (216)
T ss_pred CCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhH------cCEEEECcCeEeccCCcceeeccCcccCCCCeE
Confidence 35689999999999996 57888896 45555566555543 7999999999996 2110 001
Q ss_pred ---------------CC-CCcEEEEcCCCCCCCC----CCCCeEEe----C--CHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 024737 143 ---------------LP-GRLNVVLTHSGSFNIA----SLENVEIC----R--SIHLALELLAEPPYCSSIEKVFVIGGG 196 (263)
Q Consensus 143 ---------------lp-~r~nIVlSrt~~~~~~----~~~~v~v~----~--sieeai~~l~~~~~~~~~~~I~ViGGa 196 (263)
+. ..+.+|+|+....... ...++.+. + ++.++++.|++. +.++|+|.||+
T Consensus 76 vv~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG~ 151 (216)
T TIGR00227 76 VVLDSQLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGGG 151 (216)
T ss_pred EEECCCCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeCH
Confidence 11 1345666544211100 01123322 3 799999999876 78899999999
Q ss_pred HHHHHHhCCCCcCEEEEEEECCccC---CceecC
Q 024737 197 QILREALNAPECDAIHITKIETSIE---CDTFIP 227 (263)
Q Consensus 197 ~Iy~~~L~~~lvDel~LT~I~~~le---GD~fFP 227 (263)
++..+|++++++||+++++.|..+. |.++|.
T Consensus 152 ~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~ 185 (216)
T TIGR00227 152 TLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVD 185 (216)
T ss_pred HHHHHHHHCCCCCEEEEEECchhhCCCCCcCccC
Confidence 9999999999999999999998875 555554
No 11
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.45 E-value=6.6e-13 Score=125.16 Aligned_cols=135 Identities=20% Similarity=0.171 Sum_probs=94.0
Q ss_pred CCcEEEEEEEeCCCeee-cCCCCCCCC-hhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCC---CCCC---------
Q 024737 78 RRPYQVVVAATHDMGIG-KDGKLPWNL-PSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL---YRPL--------- 143 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG-~~G~LpW~~-~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~---~~pl--------- 143 (263)
.+-+++.+|+|+||+|+ .+|...|.- +++..++.++... .+++||||+||+..... .+|.
T Consensus 140 rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV 213 (344)
T TIGR00326 140 LPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTARLDEATEQPLRVV 213 (344)
T ss_pred CCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccccCCCCCCCCeEEE
Confidence 45699999999999996 588899964 4455555555443 69999999999952100 0110
Q ss_pred ---------------CCCcEEEEcCCCCCC-CCCCCCeEEe----CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHh
Q 024737 144 ---------------PGRLNVVLTHSGSFN-IASLENVEIC----RSIHLALELLAEPPYCSSIEKVFVIGGGQILREAL 203 (263)
Q Consensus 144 ---------------p~r~nIVlSrt~~~~-~~~~~~v~v~----~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L 203 (263)
...+.+|+|++.... .....++.+. .++.++++.|++. +.++|+|.||+.+..+|+
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L~~~ll 289 (344)
T TIGR00326 214 LDTQLRIPEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNLLGSFL 289 (344)
T ss_pred EcCCCCCCCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHHHHHHH
Confidence 023455555432110 0001123322 3789999999875 789999999999999999
Q ss_pred CCCCcCEEEEEEECCccCC
Q 024737 204 NAPECDAIHITKIETSIEC 222 (263)
Q Consensus 204 ~~~lvDel~LT~I~~~leG 222 (263)
+++|+||+++++.|..+.|
T Consensus 290 ~~gLVDEl~l~i~P~ilG~ 308 (344)
T TIGR00326 290 DEGLVDELIIYIAPKLLGG 308 (344)
T ss_pred HCCCCeEEEEEEccEEecC
Confidence 9999999999999987743
No 12
>PRK14059 hypothetical protein; Provisional
Probab=99.24 E-value=8.6e-10 Score=100.25 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=110.9
Q ss_pred CCcEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhc-cCCC--C----------CC
Q 024737 78 RRPYQVVVAATHDMGIGKDGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SPLY--R----------PL 143 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG~~G~LpW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~~~--~----------pl 143 (263)
.+-+++.+|+|+||.|+.+|.--|. -+++.++..++-.. .++|+.|.+|-..= |.-. . -.
T Consensus 30 rP~V~lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa~------~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g~ 103 (251)
T PRK14059 30 RPWLRANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRAL------ADVVVVGAGTVRAENYGGVRLSAAARQQRQARGQ 103 (251)
T ss_pred CCeEEEEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHHH------CCEEEEchhhhhhcCccccccCHHHHHHHHhcCC
Confidence 5679999999999999977777786 46666665555543 69999999998531 1000 0 00
Q ss_pred -CCCcEEEEcCCCCCCCC-----------------------------CCCCeEE-e-----CCHHHHHHHhcCCCCCCCC
Q 024737 144 -PGRLNVVLTHSGSFNIA-----------------------------SLENVEI-C-----RSIHLALELLAEPPYCSSI 187 (263)
Q Consensus 144 -p~r~nIVlSrt~~~~~~-----------------------------~~~~v~v-~-----~sieeai~~l~~~~~~~~~ 187 (263)
++.+.||++++...+.. ...++.+ . -++.++++.|++. +.
T Consensus 104 ~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~ 179 (251)
T PRK14059 104 AEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----GL 179 (251)
T ss_pred CCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----CC
Confidence 12234555554322100 0002222 1 2678889999875 78
Q ss_pred CcEEEEeCHHHHHHHhCCCCcCEEEEEEECCcc-CC-ceecCCC--CccCceEeeeccCceeCcccEEEEEEEEc
Q 024737 188 EKVFVIGGGQILREALNAPECDAIHITKIETSI-EC-DTFIPAI--DLSLFQQRYSSQPLVENNIQFSFVTYVRV 258 (263)
Q Consensus 188 ~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~l-eG-D~fFP~~--d~~~f~~~~~~~~~~en~~~~~f~~Y~r~ 258 (263)
++|||.||+.+..+|++++++||+++++.|..+ +| -++|+.. ....|++.... ...+ +..+..|++.
T Consensus 180 ~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~~~~l~L~~~~--~~~~--g~v~l~Y~~~ 250 (251)
T PRK14059 180 RRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPGQAPTRMRLAHVL--TDDD--GYLFLRYVRA 250 (251)
T ss_pred CEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCCCCCcCeEEEEEE--EcCC--CEEEEEEEeC
Confidence 999999999999999999999999999999988 34 4777652 23456654322 1123 6788999875
No 13
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=99.04 E-value=1.8e-08 Score=88.90 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=91.6
Q ss_pred cEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhh----ccCCCCC--CCCCcEEEE
Q 024737 80 PYQVVVAATHDMGIGK-DGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWES----ISPLYRP--LPGRLNVVL 151 (263)
Q Consensus 80 kIilivAvS~dG~IG~-~G~LpW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyes----lp~~~~p--lp~r~nIVl 151 (263)
-+++-+|+|+||.|+. +|+ -|. -+++..++.++-.. .++|+.|.+|-.. +.-. .+ -.+...+|+
T Consensus 2 ~V~lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r-~~~~~~~P~rvVl 73 (210)
T TIGR01508 2 YVIVNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVK-KIKSDRNPVRVVV 73 (210)
T ss_pred EEEEEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCccccc-CcccCCCCEEEEE
Confidence 4788999999999974 666 562 25566666665543 6999999999863 1100 01 012234555
Q ss_pred cCCCCCCCC--------------------------CCCCeEE--e----CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHH
Q 024737 152 THSGSFNIA--------------------------SLENVEI--C----RSIHLALELLAEPPYCSSIEKVFVIGGGQIL 199 (263)
Q Consensus 152 Srt~~~~~~--------------------------~~~~v~v--~----~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy 199 (263)
+++...+.. ...++.+ + -++.++++.|++. +.++|||-||+.+.
T Consensus 74 d~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~ 149 (210)
T TIGR01508 74 DSKLRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLI 149 (210)
T ss_pred CCCCCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHH
Confidence 554322100 0012221 1 1678888888865 78999999999999
Q ss_pred HHHhCCCCcCEEEEEEECCccC---CceecC
Q 024737 200 REALNAPECDAIHITKIETSIE---CDTFIP 227 (263)
Q Consensus 200 ~~~L~~~lvDel~LT~I~~~le---GD~fFP 227 (263)
.+|++++++||+++++.|..+. +..+|.
T Consensus 150 ~~fl~~~LvDel~l~i~P~ilG~~~~~~~~~ 180 (210)
T TIGR01508 150 WSLFKENLVDEISVYIAPKIFGGRDAPTYVD 180 (210)
T ss_pred HHHHHCCCCcEEEEEEcCEEEcCCCCcCccC
Confidence 9999999999999999998874 345554
No 14
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.87 E-value=8.1e-08 Score=91.71 Aligned_cols=146 Identities=13% Similarity=0.115 Sum_probs=93.4
Q ss_pred cCCCcccccCCCCcEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhc-cC-CCC--
Q 024737 67 SNDNASMHLRARRPYQVVVAATHDMGIGK-DGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SP-LYR-- 141 (263)
Q Consensus 67 ~~~~~~~~~~~~rkIilivAvS~dG~IG~-~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~-~~~-- 141 (263)
.|-+.+.+-..++-+++-+|+|+||.|+. +|.-...-+++.++..++-.. .++|++|.+|-..= |. ..+
T Consensus 128 ~~~~~~~~~~~rP~V~lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~ 201 (360)
T PRK14719 128 ININSDLSDIMLPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKI 201 (360)
T ss_pred cccccccccCCCCeEEEEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccc
Confidence 33344443345777999999999999985 454332335566665555543 69999999999421 00 001
Q ss_pred ---CCCCCcEEEEcCCCCCCCC-----------------------------CCCCeEEe------CCHHHHHHHhcCCCC
Q 024737 142 ---PLPGRLNVVLTHSGSFNIA-----------------------------SLENVEIC------RSIHLALELLAEPPY 183 (263)
Q Consensus 142 ---plp~r~nIVlSrt~~~~~~-----------------------------~~~~v~v~------~sieeai~~l~~~~~ 183 (263)
+-++...||++++...+.. ...++.+. -++.++++.|.+.
T Consensus 202 ~~~~~~~P~RVVlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~-- 279 (360)
T PRK14719 202 NASPKDNPLRIVVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM-- 279 (360)
T ss_pred cccCCCCCEEEEEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC--
Confidence 0012223444443211000 00122221 1677888888765
Q ss_pred CCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCccCC
Q 024737 184 CSSIEKVFVIGGGQILREALNAPECDAIHITKIETSIEC 222 (263)
Q Consensus 184 ~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leG 222 (263)
+...|||-||+++..+|++++++||+++++.|..+.|
T Consensus 280 --gi~svlVEGG~~l~~sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 280 --GINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred --CCCEEEEEeCHHHHHHHHHCCCceEEEEEEccEEECC
Confidence 7899999999999999999999999999999988754
No 15
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.72 E-value=3.9e-07 Score=87.11 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=94.5
Q ss_pred CCcEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCC--CC-C-C--------
Q 024737 78 RRPYQVVVAATHDMGIGK-DGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPL--YR-P-L-------- 143 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG~-~G~LpW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~--~~-p-l-------- 143 (263)
.+-+++-+|+|+||.|+. +|+--|. -+++..++.++-.. .|+|++|.+|-..=... .+ + +
T Consensus 146 rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~------~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~ 219 (367)
T PRK10786 146 FPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ------SHAILTSSATVLADDPALTVRWSELDAQTQALY 219 (367)
T ss_pred cceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHhH------CCEEEECcChHhhcCCCcccccccccccccccc
Confidence 566999999999999974 7777785 56777776665543 79999999998631100 00 0 0
Q ss_pred -----CCCcEEEEcCCCCCCCC------C---------------CCCe---EEe-----CCHHHHHHHhcCCCCCCCCCc
Q 024737 144 -----PGRLNVVLTHSGSFNIA------S---------------LENV---EIC-----RSIHLALELLAEPPYCSSIEK 189 (263)
Q Consensus 144 -----p~r~nIVlSrt~~~~~~------~---------------~~~v---~v~-----~sieeai~~l~~~~~~~~~~~ 189 (263)
+....||++++...+.. . ..++ .+. -++.++++.|.+. +...
T Consensus 220 ~~~~~~~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~----Gi~~ 295 (367)
T PRK10786 220 PQENLRQPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ----QINS 295 (367)
T ss_pred ccccCCCCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----CCCE
Confidence 12235788876432110 0 0011 111 1677888888765 8899
Q ss_pred EEEEeCHHHHHHHhCCCCcCEEEEEEECCccCC
Q 024737 190 VFVIGGGQILREALNAPECDAIHITKIETSIEC 222 (263)
Q Consensus 190 I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~leG 222 (263)
+||-||+.+..+|++++++||+++++.|..+.+
T Consensus 296 l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G~ 328 (367)
T PRK10786 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGS 328 (367)
T ss_pred EEEeeCHHHHHHHHHCCCccEEEEEEcceeccC
Confidence 999999999999999999999999999988743
No 16
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=98.69 E-value=9e-07 Score=79.18 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=94.5
Q ss_pred CCcEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhc-cCC--CC-C---CCCCcE
Q 024737 78 RRPYQVVVAATHDMGIGK-DGKLPWN-LPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SPL--YR-P---LPGRLN 148 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG~-~G~LpW~-~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~~--~~-p---lp~r~n 148 (263)
.+.+++-+|+|+||.|+. +|+--|. -+++.+...++-.. .++++.|.+|-..= |.- .+ . ..+...
T Consensus 3 rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~r 76 (218)
T COG1985 3 RPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVR 76 (218)
T ss_pred CCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEE
Confidence 457899999999999985 6666696 46666555555443 69999999998631 100 00 0 123334
Q ss_pred EEEcCCCCCCCC------C--------------------CCCeE--EeC----CHHHHHHHhcCCCCCCCCCcEEEEeCH
Q 024737 149 VVLTHSGSFNIA------S--------------------LENVE--ICR----SIHLALELLAEPPYCSSIEKVFVIGGG 196 (263)
Q Consensus 149 IVlSrt~~~~~~------~--------------------~~~v~--v~~----sieeai~~l~~~~~~~~~~~I~ViGGa 196 (263)
||++++...+.. . ..++. +++ |+..+++.|.+. +...++|=||+
T Consensus 77 VIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~ 152 (218)
T COG1985 77 VILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGA 152 (218)
T ss_pred EEECCCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCH
Confidence 555544321100 0 01111 222 578888889876 68999999999
Q ss_pred HHHHHHhCCCCcCEEEEEEECCccCC--ceecCC
Q 024737 197 QILREALNAPECDAIHITKIETSIEC--DTFIPA 228 (263)
Q Consensus 197 ~Iy~~~L~~~lvDel~LT~I~~~leG--D~fFP~ 228 (263)
.+..+|+++++|||+.+++.|..+.| -+++..
T Consensus 153 ~L~~s~l~~glVDel~l~iaP~i~G~~~~~~~~~ 186 (218)
T COG1985 153 TLNGSFLEAGLVDELLLYIAPKILGGSARTLVGG 186 (218)
T ss_pred HHHHHHHHcCCCcEEEEEEechhhcCCCCccccC
Confidence 99999999999999999999988854 455553
No 17
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=98.18 E-value=4.1e-05 Score=73.79 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=85.0
Q ss_pred CCcEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhc-cCC-CC-C-CCCCcEEEEc
Q 024737 78 RRPYQVVVAATHDMGIGK-DGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESI-SPL-YR-P-LPGRLNVVLT 152 (263)
Q Consensus 78 ~rkIilivAvS~dG~IG~-~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyesl-p~~-~~-p-lp~r~nIVlS 152 (263)
.+-+++-+|+|+||.|+. .|.--|.-..+....+.. .++|+.| +|--.= |.- -+ | .++...||++
T Consensus 175 rP~V~lK~A~SlDGkia~~~g~s~~~s~~~vh~lRa~---------~DAIlVG-~Tv~~DnP~Lt~R~~~~~~PiRVVld 244 (380)
T PLN02807 175 KPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQLLQE---------YDAVILS-SALADADPLPLSQEAGAKQPLRIIIA 244 (380)
T ss_pred cccEEEEEEEcCCCCeeCCCCCChhhhhHHHHHHHhh---------CCEEEEc-CEeeccCCCCccCCCCCCCCEEEEEc
Confidence 567999999999999975 454334332332332222 6999999 986321 100 01 1 1223446666
Q ss_pred CCCCCCCC-------CC-------------------CCeEEe----CCHHHHHHHhcCCCCCCCCCcEEEEe------CH
Q 024737 153 HSGSFNIA-------SL-------------------ENVEIC----RSIHLALELLAEPPYCSSIEKVFVIG------GG 196 (263)
Q Consensus 153 rt~~~~~~-------~~-------------------~~v~v~----~sieeai~~l~~~~~~~~~~~I~ViG------Ga 196 (263)
++...+.. .. .++.+. -++.++++.|.+. +...++|=| |+
T Consensus 245 ~~l~~p~~~~i~~~~~~~~~iv~t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~----Gi~svLVEGG~~~~~G~ 320 (380)
T PLN02807 245 RSESSPLQIPSLREESAAKVLVLADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQR----GLCSVLLDLRGNVGGLE 320 (380)
T ss_pred CCCCCCCcceecccCCCCCEEEEECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHC----CCCEEEEecCCCCCCHH
Confidence 65422100 00 112211 1688888888776 899999999 89
Q ss_pred HHHHHHhCCCCcCEEEEEEECCccCC
Q 024737 197 QILREALNAPECDAIHITKIETSIEC 222 (263)
Q Consensus 197 ~Iy~~~L~~~lvDel~LT~I~~~leG 222 (263)
.+..+|++++|+||+++.+.|..+.+
T Consensus 321 ~L~~sfl~~~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 321 SLLKDALEDKLLQKVVVEVLPFWSGS 346 (380)
T ss_pred HHHHHHHHCCCccEEEEEEcCceecC
Confidence 99999999999999999999998854
No 18
>PRK00536 speE spermidine synthase; Provisional
Probab=50.36 E-value=8.6 Score=35.50 Aligned_cols=43 Identities=12% Similarity=0.367 Sum_probs=32.4
Q ss_pred CCCcEEEEeCH--HHHHHHhCCCCcCEEEEEEECCcc--CCceecCCCC
Q 024737 186 SIEKVFVIGGG--QILREALNAPECDAIHITKIETSI--ECDTFIPAID 230 (263)
Q Consensus 186 ~~~~I~ViGGa--~Iy~~~L~~~lvDel~LT~I~~~l--eGD~fFP~~d 230 (263)
..++|.|+||| .+.+++|+|+ +++.+-.|+..+ -|-.+||.+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHH
Confidence 56899999996 5899999997 476666665543 4777888754
No 19
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=39.27 E-value=68 Score=25.80 Aligned_cols=74 Identities=15% Similarity=0.317 Sum_probs=46.5
Q ss_pred ecCCCCCCCChhhHHHHHHHhhCCCCCCCCCEEEEcchhhhhccCCCCCCCCCcEEEEcCCCCCCCCCCCCeEEeCCHHH
Q 024737 94 GKDGKLPWNLPSDLKFFKQLTMSTSDPGKRNAVVMGRKTWESISPLYRPLPGRLNVVLTHSGSFNIASLENVEICRSIHL 173 (263)
Q Consensus 94 G~~G~LpW~~~eD~~~F~~~T~~~~~~~~~~avIMGRkTyeslp~~~~plp~r~nIVlSrt~~~~~~~~~~v~v~~siee 173 (263)
+.+-++.|.-.-|++.+.+.-- ..+++.|.+.++.-- |..+ ...+.+.+.+.+++++
T Consensus 33 aDG~DvSWiWDvdFE~L~~~~i-------~~viv~G~Ra~Dmal--------RLky--------AGv~~~~i~v~~d~~~ 89 (113)
T PF08353_consen 33 ADGRDVSWIWDVDFEKLADPNI-------KQVIVSGTRAEDMAL--------RLKY--------AGVDEEKIIVEEDLEE 89 (113)
T ss_pred CCCccceEEeecCHHHHhcCCC-------CEEEEEeeeHHHHHh--------Heee--------cCcchHHeEecCCHHH
Confidence 4455677877777666644321 478889999888532 2222 0001245667889999
Q ss_pred HHHH--hcCCCCCCCCCcEEEEe
Q 024737 174 ALEL--LAEPPYCSSIEKVFVIG 194 (263)
Q Consensus 174 ai~~--l~~~~~~~~~~~I~ViG 194 (263)
|++. +... +.+.++|+.
T Consensus 90 a~~~~~~~~~----~~~~~yil~ 108 (113)
T PF08353_consen 90 ALDAFLIKSD----PTDKVYILA 108 (113)
T ss_pred HHHHHHHhcC----CCCcEEEEE
Confidence 9998 5543 567788874
No 20
>PF02476 US2: US2 family; InterPro: IPR003485 This is a family of unique short (US) region proteins from Herpesviridae strains. The US2 family has no known function.
Probab=37.57 E-value=62 Score=26.85 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCcEEEEeCHHHHHHHhC-CCCcCEEEEEEECCccCCcee-cC
Q 024737 187 IEKVFVIGGGQILREALN-APECDAIHITKIETSIECDTF-IP 227 (263)
Q Consensus 187 ~~~I~ViGGa~Iy~~~L~-~~lvDel~LT~I~~~leGD~f-FP 227 (263)
--++||+|-|.|++.+++ .+.--+++-..|+....|-++ .|
T Consensus 11 pyhLWVvGAADLC~Pvl~~ip~pkRlv~~~v~~~w~g~sW~~P 53 (126)
T PF02476_consen 11 PYHLWVVGAADLCRPVLEHIPGPKRLVYAKVPGAWAGMSWALP 53 (126)
T ss_pred ceeEEEechHHHHHHHHHhCCCCceEEEEecCCccCCCccCCC
Confidence 357999999999999996 333448888889988878777 55
No 21
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.53 E-value=47 Score=25.71 Aligned_cols=37 Identities=32% Similarity=0.298 Sum_probs=27.3
Q ss_pred EeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCC
Q 024737 167 ICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAP 206 (263)
Q Consensus 167 v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~ 206 (263)
+..+...+.+.+++. ...++||++|...+-+.+-++|
T Consensus 63 i~ts~~~~~~~l~~~---~~~~~v~vlG~~~l~~~l~~~G 99 (101)
T PF13344_consen 63 IITSGMAAAEYLKEH---KGGKKVYVLGSDGLREELREAG 99 (101)
T ss_dssp EEEHHHHHHHHHHHH---TTSSEEEEES-HHHHHHHHHTT
T ss_pred EEChHHHHHHHHHhc---CCCCEEEEEcCHHHHHHHHHcC
Confidence 455667777777763 2689999999999988887665
No 22
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.37 E-value=3.4e+02 Score=24.71 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCcEEEEcCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhC-CCCcCEEEEEEECCc
Q 024737 145 GRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALN-APECDAIHITKIETS 219 (263)
Q Consensus 145 ~r~nIVlSrt~~~~~~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~-~~lvDel~LT~I~~~ 219 (263)
+.|.+-+-|..... .+.+++..+.|.++|.+.+.+. +.++|++.=|..-...+.+ ...-.++++-++|..
T Consensus 93 ~ipylR~eRp~~~~-~~~~~~~~v~~~~eA~~~l~~~----~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~ 163 (249)
T PF02571_consen 93 GIPYLRFERPSWQP-EPDDNWHYVDSYEEAAELLKEL----GGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTP 163 (249)
T ss_pred CcceEEEEcCCccc-CCCCeEEEeCCHHHHHHHHhhc----CCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCc
Confidence 45666666654221 1135678889999999999775 5689999999999999965 333457777655553
No 23
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=28.39 E-value=50 Score=29.94 Aligned_cols=50 Identities=32% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCCeEEe--CCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHH
Q 024737 144 PGRLNVVLTHSGSFNIASLENVEIC--RSIHLALELLAEPPYCSSIEKVFVIGGGQILRE 201 (263)
Q Consensus 144 p~r~nIVlSrt~~~~~~~~~~v~v~--~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~ 201 (263)
++...+|+|+++.... ..-++..+ .++.+.++.+++. ++.|+||+++++.
T Consensus 27 ~~~~~~v~s~~p~~~~-~~~~v~~~~r~~~~~~~~~l~~~-------D~vI~gGG~l~~d 78 (298)
T TIGR03609 27 PGVEPTVLSNDPAETA-KLYGVEAVNRRSLLAVLRALRRA-------DVVIWGGGSLLQD 78 (298)
T ss_pred CCCeEEEecCChHHHH-hhcCceEEccCCHHHHHHHHHHC-------CEEEECCcccccC
Confidence 4566778888764321 11244322 4677777777753 6888999988763
No 24
>PRK10444 UMP phosphatase; Provisional
Probab=26.94 E-value=4.3e+02 Score=23.65 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=25.4
Q ss_pred eCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCC
Q 024737 168 CRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPE 207 (263)
Q Consensus 168 ~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~l 207 (263)
..+-..+.+.|++. +...+|++|..++.+++.++|+
T Consensus 67 ~ts~~~~~~~L~~~----~~~~v~~~g~~~l~~~l~~~g~ 102 (248)
T PRK10444 67 YTSAMATADFLRRQ----EGKKAYVIGEGALIHELYKAGF 102 (248)
T ss_pred ecHHHHHHHHHHhC----CCCEEEEEcCHHHHHHHHHCcC
Confidence 34555666677664 3467999999999888876554
No 25
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.79 E-value=3.6e+02 Score=25.08 Aligned_cols=68 Identities=18% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECC
Q 024737 144 PGRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIET 218 (263)
Q Consensus 144 p~r~nIVlSrt~~~~~~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~ 218 (263)
.+-|-+.+-|..... ..++...+.|++||.+.+++. +++||+.=|.+-...|.+.+-.+++++-.+|.
T Consensus 92 ~gipy~r~eRP~~~~--~gd~~~~V~d~~ea~~~~~~~-----~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~ 159 (257)
T COG2099 92 TGIPYLRLERPPWAP--NGDNWIEVADIEEAAEAAKQL-----GRRVFLTTGRQNLAHFVAADAHSHVLARVLPP 159 (257)
T ss_pred hCCcEEEEECCcccc--CCCceEEecCHHHHHHHHhcc-----CCcEEEecCccchHHHhcCcccceEEEEEcCc
Confidence 567788888865322 136777889999999999874 58999988888889999766555687777774
No 26
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=25.44 E-value=39 Score=21.59 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=9.6
Q ss_pred CCcEEEEeCHHH
Q 024737 187 IEKVFVIGGGQI 198 (263)
Q Consensus 187 ~~~I~ViGGa~I 198 (263)
++.|||+||..-
T Consensus 11 ~~~iyv~GG~~~ 22 (47)
T PF01344_consen 11 GNKIYVIGGYDG 22 (47)
T ss_dssp TTEEEEEEEBES
T ss_pred CCEEEEEeeecc
Confidence 478999999655
No 27
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=23.86 E-value=37 Score=31.67 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=17.4
Q ss_pred hHHHHhhhhcccchhhhhhcc
Q 024737 17 KVLLSSFRRSFYNIDYVSAML 37 (263)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (263)
+-+|+-|-|.|||+.|||-.+
T Consensus 160 ~k~lnylARNFYNlr~lALfl 180 (274)
T PF06459_consen 160 TKFLNYLARNFYNLRFLALFL 180 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999998543
No 28
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=20.87 E-value=41 Score=30.40 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=29.4
Q ss_pred CCCcEEEEeC--HHHHHHHhCCCCcCEEEEEEECCcc--CCceecCC
Q 024737 186 SIEKVFVIGG--GQILREALNAPECDAIHITKIETSI--ECDTFIPA 228 (263)
Q Consensus 186 ~~~~I~ViGG--a~Iy~~~L~~~lvDel~LT~I~~~l--eGD~fFP~ 228 (263)
..++|.|+|| |.+..++++++-+.++.+-.|+..+ -+..+||.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPE 122 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchh
Confidence 5689999986 5688999988767776665665544 46778875
No 29
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=20.11 E-value=2.9e+02 Score=22.86 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCCCCCCCCeEEeCCHHHHHHHhcCCCCCCCCCcEEEEeCHHHHHHHhCCCCcCEEEEEEECCcc
Q 024737 145 GRLNVVLTHSGSFNIASLENVEICRSIHLALELLAEPPYCSSIEKVFVIGGGQILREALNAPECDAIHITKIETSI 220 (263)
Q Consensus 145 ~r~nIVlSrt~~~~~~~~~~v~v~~sieeai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDel~LT~I~~~l 220 (263)
+++.+|+..- +|+++.++.+++. .++..|++-...+..++++|+.=.++++ ++...
T Consensus 24 ~~~~~IvgaG--------------PSL~~~i~~lk~~-----~~~~~iia~~sa~~~L~~~gI~Pd~~v~-~D~~~ 79 (170)
T PF01973_consen 24 GKPAIIVGAG--------------PSLDKNIELLKEN-----RNKAIIIAVNSALKALLKNGIKPDFVVS-IDPQF 79 (170)
T ss_pred CCeEEEEecC--------------CCHHHHHHHHHhc-----ccCcEEEEecHHHHHHHHcCceEEEEEE-cCCCc
Confidence 4777777532 3788889999875 2456666666789999999998899887 66533
Done!