BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024738
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
+ +E N NYS L+ + ++ G++ +LG NG GKSTL + G+LKP+
Sbjct: 8 LKVEELNYNYSDGTHA------LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 92 NGHV-YVKRPKSF--------------VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136
+G + + +P + VFQ+PD+Q+ +V DV+FG N+ L DE+R
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR 121
Query: 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFG 196
+V AL G+ + +P LS GQK+RVAIAG L KV D G
Sbjct: 122 KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL---DPMG 178
Query: 197 VIEAVKNLLGDSGE--VTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242
V E +K L+ E +T + TH ++ + Y D F M++G++++Q +
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 19/198 (9%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----------KRPKS 102
+L+D + +G++++++G NG GK+TLLK+LAGLL G +++ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GEIFLDGSPADPFLLRKNVG 84
Query: 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
+VFQNP Q++ TVE DVAF L + L E+R ++ K L+ VG+S LSGG
Sbjct: 85 YVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGG 144
Query: 163 QKQRVAIAGALAEACKVXXXXXXXXXXXXSDQ---FGVIEAVKNLLGDSGEVTALWVTHR 219
QKQR+AIA LA + Q F V+E++KN G+ L VTH
Sbjct: 145 QKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN----EGKGIIL-VTHE 199
Query: 220 LEELEYADGAFYMEDGKI 237
LE L+ D ++ +G I
Sbjct: 200 LEYLDDMDFILHISNGTI 217
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKS 102
+R SF + G++ LLGP+G GK+T+L+++AGL +PT G V++ KR
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
VFQN M TV +V+FGL + DE+ ++V + L + + +Y R LSGG
Sbjct: 91 LVFQNYALFQHM-TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGG 149
Query: 163 QKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
Q+QRVA+A ALA +V + + V+ + + G VT+++VTH EE
Sbjct: 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEE 208
Query: 223 -LEYADGAFYMEDGKI 237
LE AD + +G +
Sbjct: 209 ALEVADRVLVLHEGNV 224
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 18/196 (9%)
Query: 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-----------RPKSFVF 105
SF V G+ LLGP+GCGK+T L +LAG+ KPT+G +Y R VF
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 106 QNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ 163
QN + P TV ++AF L ++ DEV +V + + + N L R LSGGQ
Sbjct: 82 QN---YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQ 138
Query: 164 KQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-RLEE 222
+QRVA+A AL + KV + + + +K+L + G +T+++VTH + E
Sbjct: 139 QQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEA 197
Query: 223 LEYADGAFYMEDGKIV 238
+ A GK+V
Sbjct: 198 MTMASRIAVFNQGKLV 213
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-----RPKSFVF 105
V ++D S + G+ +LLGP+GCGK+T L+ +AGL +PT G +Y++ P+ VF
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 106 QNPDHQVVM-----------PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
P + V TV ++AF L + E+ +V + + +G++ L R
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
+ LSGGQ+QRVA+ A+ KV + +K L G VT +
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLG-VTTI 197
Query: 215 WVTH 218
+VTH
Sbjct: 198 YVTH 201
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPKSFVF 105
V +R+ S V G+ +LLGP+GCGK+T L+++AGL +P+ G +Y V P+ +F
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 106 QNP-DHQVVM--------P--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
P D + M P TV ++AF L + E+ +V + + +G++ L R
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR 135
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
+ LSGGQ+QRVA+ A+ +V + + +K L G VT +
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTI 194
Query: 215 WVTH-RLEELEYADGAFYMEDG 235
+VTH ++E + D M G
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRG 216
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 18/199 (9%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------PKS---- 102
L + + + G+ LLGP+G GKSTLL +AG+ KPT+G +Y PK
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 103 FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
VFQN + P TV ++AF L +E+ KV + + + L R LS
Sbjct: 79 LVFQN---WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLS 135
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-R 219
GGQ+QRVAIA AL + +V + V +K L + G +T ++VTH +
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQ 194
Query: 220 LEELEYADGAFYMEDGKIV 238
E L AD + +G+I+
Sbjct: 195 AEALAMADRIAVIREGEIL 213
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 28/226 (12%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT- 91
A+E N++++ R VPI +D S S+PSG + L+GP+G GKST+L +L L P
Sbjct: 341 ALEFKNVHFAY--PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398
Query: 92 -----NGH-------VYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
+GH V+++ V Q P + ++ ++A+G + + E +V
Sbjct: 399 GTISLDGHDIRQLNPVWLRSKIGTVSQEPI--LFSCSIAENIAYGADDPSSVTAEEIQRV 456
Query: 140 AKALDAVGMSNYLQRPVQT--------LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXX 191
A+ +AV + T LSGGQKQR+AIA AL + K+
Sbjct: 457 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516
Query: 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+++ V EA+ L+ T L + HRL ++ A+ ++ GKI
Sbjct: 517 ENEYLVQEALDRLMDGR---TVLVIAHRLSTIKNANMVAVLDQGKI 559
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVF 105
+ ++ G+ +LLGP+GCGK+T L+++AGL +PT G +Y R S VF
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89
Query: 106 QNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ 163
Q+ V P TV ++AF L DE+ +V A + + + L R LSGGQ
Sbjct: 90 QS---YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQ 146
Query: 164 KQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-RLEE 222
+QRVA+A A+ V + + +K L +VT ++VTH ++E
Sbjct: 147 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEA 205
Query: 223 LEYADGAFYMEDGKIV---------MQADGVSILNFIKSRQSSYIE 259
+ D M G+++ ++ + V + FI + + + +E
Sbjct: 206 MTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILE 251
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVF 105
+ ++ G+ +LLGP+GCGK+T L+++AGL +PT G +Y R S VF
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 90
Query: 106 QNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ 163
Q+ V P TV ++AF L DE+ +V A + + + L R LSGGQ
Sbjct: 91 QS---YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQ 147
Query: 164 KQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-RLEE 222
+QRVA+A A+ V + + +K L +VT ++VTH ++E
Sbjct: 148 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEA 206
Query: 223 LEYADGAFYMEDGKIV---------MQADGVSILNFIKSRQSSYIE 259
+ D M G+++ ++ + V + FI + + + +E
Sbjct: 207 MTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILE 252
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 21/229 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ SN+ + R + L + S VP+GQ++ ++G +G GKSTL++ + L +PT G
Sbjct: 2 IKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 94 HVYV----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
V V +R +FQ+ + + TV +VA L N DEV+
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFN-LLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGV 197
+V + L VG+ + LSGGQKQRVAIA ALA KV + +
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVS 245
+E +K++ G +T L +TH ++ ++ D + +G+++ Q D VS
Sbjct: 180 LELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVS 226
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 21/229 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ SN+ + R + L + S VP+GQ++ ++G +G GKSTL++ + L +PT G
Sbjct: 25 IKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 94 HVYV----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
V V +R +FQ+ + + TV +VA L N DEV+
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFN-LLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGV 197
+V + L VG+ + LSGGQKQRVAIA ALA KV + +
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVS 245
+E +K++ G +T L +TH ++ ++ D + +G+++ Q D VS
Sbjct: 203 LELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVS 249
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 28/226 (12%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT- 91
A+E N++++ R VPI +D S S+PSG + L+GP+G GKST+L +L L P
Sbjct: 372 ALEFKNVHFAY--PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 429
Query: 92 -----NGH-------VYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
+GH V+++ V Q P + ++ ++A+G + + E +V
Sbjct: 430 GTISLDGHDIRQLNPVWLRSKIGTVSQEP--ILFSCSIAENIAYGADDPSSVTAEEIQRV 487
Query: 140 AKALDAVGMSNYLQRPVQT--------LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXX 191
A+ +AV + T LSGGQKQR+AIA AL + K+
Sbjct: 488 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 547
Query: 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+++ V EA+ L+ T L + H L ++ A+ ++ GKI
Sbjct: 548 ENEYLVQEALDRLMDGR---TVLVIAHHLSTIKNANMVAVLDQGKI 590
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 21/229 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ SN+ + R + L + S VP+GQ++ ++G +G GKSTL++ + L +PT G
Sbjct: 25 IKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 94 HVYV----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
V V +R +FQ+ + + TV +VA L N DEV+
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGXIFQHFN-LLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGV 197
+V + L VG+ + LSGGQKQRVAIA ALA KV + +
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVS 245
+E +K++ G +T L +TH + ++ D + +G+++ Q D VS
Sbjct: 203 LELLKDINRRLG-LTILLITHEXDVVKRICDCVAVISNGELIEQ-DTVS 249
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----------VKRPKSF 103
L + S + G+ ++ G G GKSTLL+++AGL++PT+G V ++R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM--SNYLQRPVQTLSG 161
FQ P+ Q V +VAF + N D V V KA++ VG+ ++ R LSG
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV-PLVKKAMEFVGLDFDSFKDRVPFFLSG 141
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXX---XXXXSDQFGVIEAVKNLLGDSGEVTALWVTH 218
G+K+RVAIA + + +D ++E K L G+ T + ++H
Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL----GK-TVILISH 196
Query: 219 RLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+E + + D +E GK V + L
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----------VKRPKSF 103
L + S + G+ ++ G G GKSTLL+++AGL++PT+G V ++R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM--SNYLQRPVQTLSG 161
FQ P+ Q V +VAF + N D V V KA++ VG+ ++ R LSG
Sbjct: 85 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV-PLVKKAMEFVGLDFDSFKDRVPFFLSG 143
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXX---XXXXSDQFGVIEAVKNLLGDSGEVTALWVTH 218
G+K+RVAIA + + +D ++E K L G+ T + ++H
Sbjct: 144 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL----GK-TVILISH 198
Query: 219 RLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+E + + D +E GK V + L
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLE 229
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFV---FQNPD 109
+ + +F + G + +LG NGCGKSTLL +L G+ +P G + V + FV F +P
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPF 79
Query: 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169
V+ V + + +ALD + +++ +R +LSGGQ+Q + I
Sbjct: 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILI 139
Query: 170 AGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHR 219
A A+A CK+ ++Q V+ + + L S +T ++ TH+
Sbjct: 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLID-LAQSQNMTVVFTTHQ 188
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 28/157 (17%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK- 98
N S K+ K+V L + + ++ +G+ + +LGP+G GK+T ++++AGL P+ G +Y
Sbjct: 8 NVSKVFKKGKVVA-LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 99 ---------------RPKSFVFQNPDHQVVMPTVEA--DVAFGLGNLNLTHDEVRSKV-- 139
R VFQ + P + A ++AF L N+ ++ +E+R +V
Sbjct: 67 RLVASNGKLIVPPEDRKIGMVFQT---WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 140 -AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175
AK LD + N+ R LSGGQ+QRVA+A AL +
Sbjct: 124 VAKILDIHHVLNHFPR---ELSGGQQQRVALARALVK 157
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 28/157 (17%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-- 97
N S K+ K+V L + + ++ +G+ + +LGP+G GK+T ++++AGL P+ G +Y
Sbjct: 8 NVSKVFKKGKVVA-LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 98 --------------KRPKSFVFQNPDHQVVMPTVEA--DVAFGLGNLNLTHDEVRSK--- 138
R VFQ + P + A ++AF L N+ ++ +E+R +
Sbjct: 67 RLVASNGKLIVPPEDRKIGMVFQT---WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175
VAK LD + N+ R LSG Q+QRVA+A AL +
Sbjct: 124 VAKILDIHHVLNHFPR---ELSGAQQQRVALARALVK 157
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 49 KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS------ 102
+++ L++ + ++ G+ ++GP+G GKST+L ++ L KPT G VY+ K+
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Query: 103 -----------FVFQNPDHQVVMPTVE-ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN 150
FVFQ + ++ +E ++ E R K +AL+ + M+
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK--RALECLKMAE 133
Query: 151 YLQR-----PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLL 205
+R P Q LSGGQ+QRVAIA ALA + +++ +K L
Sbjct: 134 LEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 206 GDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+ G+ T + VTH + + + Y++DG++
Sbjct: 193 EEDGK-TVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 24/205 (11%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------- 98
IL+ S SV G+ ++G +G GKSTLL +L L PT G V+++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 99 ---RPKSFVFQNPDHQVVMPTVEA--DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
R FVFQ ++P + A +V + + E + + L +G+ + L
Sbjct: 79 LRNRKLGFVFQ---FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTA 213
R LSGG++QRVAIA ALA + ++ V++ + + G +
Sbjct: 136 RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI--NEGGTSI 193
Query: 214 LWVTHRLEELEYADGAFYMEDGKIV 238
+ VTH E E M+DGK+V
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVV 218
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 49 KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS------ 102
+++ L++ + ++ G+ ++GP+G GKST+L ++ L KPT G VY+ K+
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Query: 103 -----------FVFQNPDHQVVMPTVE-ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN 150
FVFQ + ++ +E ++ E R K +AL+ + M+
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK--RALECLKMAE 133
Query: 151 YLQR-----PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLL 205
+R P Q LSGGQ+QRVAIA ALA + +++ +K L
Sbjct: 134 LEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 206 GDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+ G+ T + VTH + + + Y++DG++
Sbjct: 193 EEDGK-TVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSF 103
+D + + G+ + +GP+GCGKSTLL+++AGL T+G +++ +R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 104 VFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
VFQ+ + P +V +++FGL + + +V + + + +++ L R + LSG
Sbjct: 80 VFQS---YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-RL 220
GQ+QRVAI L V + + + + L G T ++VTH ++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR-TMIYVTHDQV 195
Query: 221 EELEYADGAFYMEDGKIVMQADGVSILNFIKSR 253
E + AD ++ G++ + + ++ R
Sbjct: 196 EAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 228
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSF 103
+D + + G+ + +GP+GCGKSTLL+++AGL T+G +++ +R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 104 VFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
VFQ+ + P +V +++FGL + + +V + + + +++ L R + LSG
Sbjct: 80 VFQS---YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-RL 220
GQ+QRVAI L V + + + + L G T ++VTH ++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR-TMIYVTHDQV 195
Query: 221 EELEYADGAFYMEDGKIVMQADGVSILNFIKSR 253
E + AD ++ G++ + + ++ R
Sbjct: 196 EAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 228
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSF 103
+D + + G+ + +GP+GCGKSTLL+++AGL T+G +++ +R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 104 VFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
VFQ+ + P +V +++FGL + + +V + + + +++ L R + LSG
Sbjct: 80 VFQS---YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTH-RL 220
GQ+QRVAI L V + + + + L G T ++VTH ++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR-TMIYVTHDQV 195
Query: 221 EELEYADGAFYMEDGKIVMQADGVSILNFIKSR 253
E + AD ++ G++ + + ++ R
Sbjct: 196 EAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 18/207 (8%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD- 109
P+L D S S+ G++ ++G +GCGK+TLL+ LAG +P +G + + K+ +N +
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG-KTIFSKNTNL 75
Query: 110 ------------HQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155
V+ P TV ++A+GLGN + R ++ L+ G+S R
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY 135
Query: 156 VQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALW 215
LSGGQ+QR A+A ALA ++ + + E + L +G+ +A++
Sbjct: 136 PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK-SAVF 194
Query: 216 VTH-RLEELEYADGAFYMEDGKIVMQA 241
V+H R E L+YAD M+ G+I+ A
Sbjct: 195 VSHDREEALQYADRIAVMKQGRILQTA 221
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 33/223 (14%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99
N +R + IL+ SFSV GQ L+GP+GCGKST++ +L G +++
Sbjct: 1081 NVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDG 1140
Query: 100 PKSFVFQNPDH---QVVM----PT-----VEADVAFGLGNLNLTHDEVRSKVAKALDAVG 147
+ NP+H Q+ + PT + ++ +GL ++T ++V +A
Sbjct: 1141 SEIKTL-NPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM----AQVEEAARLAN 1195
Query: 148 MSNYL------------QRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQF 195
+ N++ R Q LSGGQKQR+AIA AL K+ +
Sbjct: 1196 IHNFIAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
V EA+ G T + + HRL + AD + +G I+
Sbjct: 1255 VVQEALDR--AREGR-TCIVIAHRLNTVMNADCIAVVSNGTII 1294
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV---- 95
N T R VPILR + V +GQ L+G +GCGKST++ +L G +
Sbjct: 420 NVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479
Query: 96 ---------YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS--KVAKALD 144
++++ + V Q P + T+E +++ LG +T +E+ + K+A A
Sbjct: 480 VDVRDINLEFLRKNVAVVSQEP--ALFNCTIEENIS--LGKEGITREEMVAACKMANAEK 535
Query: 145 AV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIE 199
+ G + + LSGGQKQR+AIA AL K+ + G+++
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQ 594
Query: 200 AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
+ L + T + + HRL + AD ++G++V D
Sbjct: 595 --QALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 87/217 (40%), Gaps = 29/217 (13%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPKSF--- 103
L S SV G + +++GPNG GKSTL+ V+ G LK G VY K P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 104 ----VFQNPDHQVVMPTVE----ADVAFGLGNLN--------LTHDEVRSKVAKALDAVG 147
FQ P M +E ++ G LN +E+ K K L+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGD 207
+S+ R LSGGQ + V I AL K+ + V L
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 208 SGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADG 243
+T L + HRL+ L Y D + M +G+I+ + G
Sbjct: 203 G--ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 28/220 (12%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG------ 93
+ S R V +L+ +F++ G++ L+GPNG GKST+ +L L +PT G
Sbjct: 19 DVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDG 78
Query: 94 -------HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKA 142
H Y+ R + V Q P QV +++ ++A+GL +T V+S
Sbjct: 79 KPLPQYEHRYLHRQVAAVGQEP--QVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSF 136
Query: 143 LDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA 200
+ + G + LSGGQ+Q VA+A AL V + Q
Sbjct: 137 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL----Q 192
Query: 201 VKNLLGDSGE---VTALWVTHRLEELEYADGAFYMEDGKI 237
V+ LL +S E + L +T L +E AD ++E G I
Sbjct: 193 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAI 232
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 87/217 (40%), Gaps = 29/217 (13%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPKSF--- 103
L S SV G + +++GPNG GKSTL+ V+ G LK G VY K P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 104 ----VFQNPDHQVVMPTVE----ADVAFGLGNLN--------LTHDEVRSKVAKALDAVG 147
FQ P M +E ++ G LN +E+ K K L+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGD 207
+S+ R LSGGQ + V I AL K+ + V L
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 208 SGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADG 243
+T L + HRL+ L Y D + M +G+I+ + G
Sbjct: 203 G--ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N+++S RK V IL+ + V SGQ L+G +GCGKST ++++ L P +G
Sbjct: 388 LEFKNIHFSY--PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 94 HV-------------YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V Y++ V Q P + T+ ++ +G ++ + E K A
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEP--VLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 141 KALDAVGMSNYLQRPVQ----------TLSGGQKQRVAIAGALAEACKVXXXXXXXXXXX 190
A D + ++ P Q LSGGQKQR+AIA AL K+
Sbjct: 504 NAYDFI-----MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 191 XSDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
+ V++A + + T + + HRL + AD + G IV Q +
Sbjct: 559 TESE-AVVQAALDKAREGR--TTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KRPKSFVF 105
R +P+L+ S V GQ L+G +GCGKST++++L P G V++ K K
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 106 QNPDHQVVMPTVE---------ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
Q Q+ + + E ++A+G + ++++E+ + AK + + L
Sbjct: 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI-VRAAKEANIHQFIDSLPDKY 1161
Query: 157 QT--------LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDS 208
T LSGGQKQR+AIA AL + + V EA+
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--ARE 1219
Query: 209 GEVTALWVTHRLEELEYADGAFYMEDGKI 237
G T + + HRL ++ AD +++GK+
Sbjct: 1220 GR-TCIVIAHRLSTIQNADLIVVIQNGKV 1247
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N+++S RK V IL+ + V SGQ L+G +GCGKST ++++ L P +G
Sbjct: 388 LEFKNIHFSY--PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 94 HV-------------YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V Y++ V Q P + T+ ++ +G ++ + E K A
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEP--VLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 141 KALDAVGMSNYLQRPVQ----------TLSGGQKQRVAIAGALAEACKVXXXXXXXXXXX 190
A D + ++ P Q LSGGQKQR+AIA AL K+
Sbjct: 504 NAYDFI-----MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 191 XSDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
+ V++A + + T + + HRL + AD + G IV Q +
Sbjct: 559 TESE-AVVQAALDKAREGR--TTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KRPKSFVF 105
R +P+L+ S V GQ L+G +GCGKST++++L P G V++ K K
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 106 QNPDHQVVMPTVE---------ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
Q Q+ + + E ++A+G + ++++E+ + AK + + L
Sbjct: 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI-VRAAKEANIHQFIDSLPDKY 1161
Query: 157 QT--------LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDS 208
T LSGGQKQR+AIA AL + + V EA+
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--ARE 1219
Query: 209 GEVTALWVTHRLEELEYADGAFYMEDGKI 237
G T + + HRL ++ AD +++GK+
Sbjct: 1220 GR-TCIVIAHRLSTIQNADLIVVIQNGKV 1247
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 39/222 (17%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-- 102
K +++ L++ + ++ G+ + GP+G GKST L ++ L KPT G VY+ K+
Sbjct: 12 KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 103 ---------------FVFQNPDHQVVMPTVEADVAFGLGNLNL----------THDEVRS 137
FVFQ + ++P + A L N+ L + +E R
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFN---LIPLLTA-----LENVELPLIFKYRGAXSGEERRK 123
Query: 138 KVAKALDAVGMSNYL--QRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQF 195
+ + L + +P Q LSGGQ+QRVAIA ALA +
Sbjct: 124 RALECLKXAELEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGE 182
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+ + +K L + G+ T + VTH + + + Y++DG++
Sbjct: 183 KIXQLLKKLNEEDGK-TVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 87/217 (40%), Gaps = 29/217 (13%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPKSF--- 103
L S SV G + +++GPNG GKSTL+ V+ G LK G VY K P
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 104 ----VFQNPDHQVVMPTVE----ADVAFGLGNLN--------LTHDEVRSKVAKALDAVG 147
FQ P M +E ++ G LN +E+ K K L+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGD 207
+S+ R LSGGQ + V I AL K+ + V L
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 208 SGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADG 243
+T L + HRL+ L Y D + M +G+I+ + G
Sbjct: 203 G--ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N+ ++ ++ VP LR+ + +P+G+ L+G +G GKST+ ++ G
Sbjct: 342 LEFRNVTFTYPGRE---VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398
Query: 94 HVYV--KRPKSFVFQNPDHQVVM---------PTVEADVAFG-LGNLNLTHDEVRSKVAK 141
H+ + + + + +QV + TV ++A+ + E +++A
Sbjct: 399 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 458
Query: 142 ALDAVG-MSNYLQRPVQT----LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFG 196
A+D + M N L + LSGGQ+QR+AIA AL + +
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ A+ L + T+L + HRL +E AD +EDG IV
Sbjct: 519 IQAALDELQKNR---TSLVIAHRLSTIEQADEIVVVEDGIIV 557
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 20/203 (9%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RP-KSFVFQNPDH 110
ILRD SF + GP+G GKST+ +L +PT G + + +P + +N
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 111 QVVMPTVEADVAFGLGNLNLTH----DEVRSKVAKALDAVGMSNYLQR-PVQ-------- 157
Q+ + ++ + G NLT+ D + + LD ++++ P Q
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 158 --TLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALW 215
+SGGQ+QR+AIA A K+ + V +A+ +L+ T L
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGR---TTLV 193
Query: 216 VTHRLEELEYADGAFYMEDGKIV 238
+ HRL + AD +++E G+I
Sbjct: 194 IAHRLSTIVDADKIYFIEKGQIT 216
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 21/199 (10%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKS 102
L + S V SG+ +++LGP G GK+ L+++AG P +G + + K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 103 FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
FV+QN + P V+ ++ FG+ + D R V + + + L R TLS
Sbjct: 76 FVYQN---YSLFPHMNVKKNLEFGM-RMKKIKDPKR--VLDTARDLKIEHLLDRNPLTLS 129
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRL 220
GG++QRVA+A AL K+ Q E + ++L ++T L +TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQ 188
Query: 221 EELE-YADGAFYMEDGKIV 238
E AD + DGK++
Sbjct: 189 TEARIMADRIAVVMDGKLI 207
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEA 119
+ G++ ++GPNG GK+T +K+LAG+ +PT G V ++ Q + E
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEG 418
Query: 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179
V L ++ + + L +G+ + R V+ LSGG+ QRVAIA L +
Sbjct: 419 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 478
Query: 180 XXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236
+ V A+++L+ + E TAL V H + ++Y + +G+
Sbjct: 479 YLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMIDYVSDRLIVFEGE 534
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 38/198 (19%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRPKSF---- 103
+PI++D G + ++GPNG GK+T +K+LAG L P + + ++F
Sbjct: 97 LPIVKD-------GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 149
Query: 104 ---VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA---KALDAVG---------- 147
F+ + + P V+ ++L V+ KV K +D VG
Sbjct: 150 LQNYFERLKNGEIRPVVKPQY------VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE 203
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGD 207
+ N L R + LSGG+ QRVAIA AL + V ++ L +
Sbjct: 204 LENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 263
Query: 208 SGEVTALWVTHRLEELEY 225
V L V H L L+Y
Sbjct: 264 GKAV--LVVEHDLAVLDY 279
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEA 119
+ G++ ++GPNG GK+T +K+LAG+ +PT G V ++ Q + E
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEG 432
Query: 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179
V L ++ + + L +G+ + R V+ LSGG+ QRVAIA L +
Sbjct: 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492
Query: 180 XXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236
+ V A+++L+ + E TAL V H + ++Y + +G+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMIDYVSDRLIVFEGE 548
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 38/198 (19%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRPKSF---- 103
+PI++D G + ++GPNG GK+T +K+LAG L P + + ++F
Sbjct: 111 LPIVKD-------GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 104 ---VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA---KALDAVG---------- 147
F+ + + P V+ ++L V+ KV K +D VG
Sbjct: 164 LQNYFERLKNGEIRPVVKPQY------VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE 217
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGD 207
+ N L R + LSGG+ QRVAIA AL + V ++ L +
Sbjct: 218 LENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 208 SGEVTALWVTHRLEELEY 225
V L V H L L+Y
Sbjct: 278 GKAV--LVVEHDLAVLDY 293
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 21/155 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E S+L+Y + ++ ++ D S + SG++ ++GPNG GKSTLL++L G L P++G
Sbjct: 12 LEASHLHYHVQQQ-----ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66
Query: 94 HVYV-------KRPKSF----VFQNPDHQVVMP-TVEADVAFGLGNLNLTHD-EVRSKVA 140
++ +PK+ ++ P +V + G + D + +V
Sbjct: 67 ECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVM 126
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175
D + ++ QR + LSGG++QRV +A LA+
Sbjct: 127 AQTDCLALA---QRDYRVLSGGEQQRVQLARVLAQ 158
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
++ ++ ++ K++ P L SFS+P G+ L+G +G GKST+ + +G
Sbjct: 342 VDVKDVTFTYQGKEK---PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 94 HV-------------YVKRPKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKV 139
+ ++R + V QN + T+ ++A+ G E ++
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNV--HLFNDTIANNIAYAAEGEYTREQIEQAARQ 456
Query: 140 AKALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQ 194
A A++ + G+ + +LSGGQ+QRVAIA AL V +
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ A+ L + T L + HRL +E AD +++G+I+
Sbjct: 517 RAIQAALDELQKNK---TVLVIAHRLSTIEQADEILVVDEGEII 557
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N+ ++ + VP LR+ + +P+G+ L+G +G GKST+ ++ G
Sbjct: 342 VEFRNVTFTYPGRD---VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398
Query: 94 HVYV--KRPKSFVFQNPDHQVVM---------PTVEADVAFG-LGNLNLTHDEVRSKVAK 141
+ + + + + +QV + TV ++A+ + E +++A
Sbjct: 399 EILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAY 458
Query: 142 ALDAVG-MSNYLQRPVQT----LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFG 196
A+D + M N L + LSGGQ+QR+AIA AL + +
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ A+ L + T+L + HRL +E AD +EDG IV
Sbjct: 519 IQAALDELQKNR---TSLVIAHRLSTIEKADEIVVVEDGVIV 557
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----------KRPK 101
P+L +FSV G L +LG G GKSTL+ ++ L+ P G V V K +
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 102 SFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEV--RSKVAKALDAV-----GMSNYLQ 153
+ P V+ T++ ++ + G + T DE+ +K+A+ D + G + ++
Sbjct: 417 GHISAVPQETVLFSGTIKENLKW--GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTA 213
R + SGGQKQR++IA AL + KV + +++ +K + T
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY---TKGCTT 531
Query: 214 LWVTHRLEELEYADGAFYMEDGKI 237
+T ++ AD + +GK+
Sbjct: 532 FIITQKIPTALLADKILVLHEGKV 555
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N+++S + L +D SF+V GQ L+GP+G GKST+L++L ++G
Sbjct: 54 IEFENVHFSYADGRETL----QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 94 HVYVKRP----------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--SKVAK 141
+ + +S + P V+ AD G + +DEV ++ A
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD-NIRYGRVTAGNDEVEAAAQAAG 168
Query: 142 ALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFG 196
DA+ G + LSGG+KQRVAIA + +A + S++
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ ++ + + T + V HRL + AD ++DG IV
Sbjct: 229 IQASLAKVCANR---TTIVVAHRLSTVVNADQILVIKDGCIV 267
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEA 119
+ G++ ++GPNG GK+T +K LAG+ +PT G + ++ Q + E
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAY-----KPQYIKADYEG 362
Query: 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179
V L ++ + + L +G+ + R V LSGG+ QRVAIA L +
Sbjct: 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422
Query: 180 XXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236
+ V A+++L + E TAL V H + ++Y + +G+
Sbjct: 423 YLLDEPSAYLDVEQRLAVSRAIRHLX-EKNEKTALVVEHDVLXIDYVSDRLXVFEGE 478
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 19/131 (14%)
Query: 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT--------NGHVYVKRPKSF--VFQNPDH 110
V G + ++GPNG GKST +K+LAG L P +G + R F+ +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 111 QVVMPTVEAD--------VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
+ P V+ V + L DE K+ + + A+ + N L+R +Q LSGG
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADET-GKLEEVVKALELENVLEREIQHLSGG 162
Query: 163 QKQRVAIAGAL 173
+ QRVAIA AL
Sbjct: 163 ELQRVAIAAAL 173
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
A+ +L I KK+ IL+ SF + G+++ L+GPNG GK+T L++++ L+KP++
Sbjct: 15 AVVVKDLRKRIGKKE-----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69
Query: 93 GHVY------------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
G V V++ S++ + M +E + F G + E+ V
Sbjct: 70 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY-LRFVAGFYASSSSEIEEMVE 128
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173
+A + G+ ++ V T S G +++ IA AL
Sbjct: 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 84 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM---RNMHKICKGRTVI 198
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ HRL ++ AD ME GKIV Q +L+
Sbjct: 199 IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 78 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM---RNMHKICKGRTVI 192
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ HRL ++ AD ME GKIV Q +L+
Sbjct: 193 IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 84 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM---RNMHKICKGRTVI 198
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ HRL ++ AD ME GKIV Q +L+
Sbjct: 199 IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 80 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 137
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM---RNMHKICKGRTVI 194
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ HRL ++ AD ME GKIV Q +L+
Sbjct: 195 IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF Q
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ---F 89
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ-----------T 158
+MP T++ ++ FG +++DE R + + A + + + + T
Sbjct: 90 SWIMPGTIKENIIFG-----VSYDEYRYR--SVIKACQLEEDISKFAEKDNIVLGEGGIT 142
Query: 159 LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVT 217
LSGGQ+ R+++A A+ + + + + E+ V L+ + T + VT
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVT 199
Query: 218 HRLEELEYADGAFYMEDG 235
++E L+ AD + +G
Sbjct: 200 SKMEHLKKADKILILHEG 217
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
V +L+ +F++ G++ L+GPNG GKST+ +L L +PT G V + + DH
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY---DH 88
Query: 111 QVVMPTVEA----DVAFGLG-NLNLTHDEVRSKVAKALDAVGM--------SNYLQ---- 153
+ V A + FG N+ + R+ + + AV M S + Q
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT 148
Query: 154 ---RPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGE 210
LSGGQ+Q VA+A AL ++ +Q V+ LL +S E
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL----RVQRLLYESPE 204
Query: 211 ---VTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247
T L +TH+L E A ++++G + Q + ++
Sbjct: 205 WASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF Q
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ---F 77
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ-----------T 158
+MP T++ ++ FG +++DE R + + A + + + + T
Sbjct: 78 SWIMPGTIKENIIFG-----VSYDEYRYR--SVIKACQLEEDISKFAEKDNIVLGEGGIT 130
Query: 159 LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVT 217
LSGGQ+ R+++A A+ + + + + E+ V L+ + T + VT
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVT 187
Query: 218 HRLEELEYADGAFYMEDG 235
++E L+ AD + +G
Sbjct: 188 SKMEHLKKADKILILHEG 205
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G G GKSTL K++ P NG V +++R
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 80 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 137
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM---RNMHKICKGRTVI 194
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ HRL ++ AD ME GKIV Q +L+
Sbjct: 195 IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 68 MLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQNPDHQVVMP- 115
+LLGP G GKS L+++AG++KP G V + +R FV P + P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV---PQDYALFPH 84
Query: 116 -TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174
+V ++A+GL N+ + R + + +G+++ L R LSGG++QRVA+A AL
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMA--EKLGIAHLLDRKPARLSGGERQRVALARALV 142
Query: 175 EACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRL-EELEYADGAFYME 233
++ + GV+ + +V L VTH L E AD M
Sbjct: 143 IQPRLLLLDEPLSAVDLKTK-GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVML 201
Query: 234 DGKIV 238
+G+IV
Sbjct: 202 NGRIV 206
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 26/226 (11%)
Query: 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------ 84
GV IE S++N+S K+ L+ +F +PSG L+G G GKST+ K+L
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRT--LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 85 AGLLK--PTNGHVYVKRP-KSFVFQNPDHQVVM-PTVEADVAFGLGNLNLTHDEVRSKVA 140
G +K N + Y + +S + P ++ T++ ++ + G L+ T +EV K
Sbjct: 73 EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILY--GKLDATDEEV-IKAT 129
Query: 141 KALDAVGMSNYLQRPVQT--------LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXS 192
K+ L + T LSGG++QR+AIA L + K+
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
++ +AV++L + T + + HRL + A+ + GKIV
Sbjct: 190 TEYLFQKAVEDLRKNR---TLIIIAHRLSTISSAESIILLNKGKIV 232
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF QN
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQN--- 107
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD-AVGMSNYLQRPV-------QTLS 160
+MP T++ ++ + +++DE R + V KA +S + ++ TLS
Sbjct: 108 SWIMPGTIKENI------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 161
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHR 219
GGQ+ R+++A A+ + + + + E+ V L+ + T + VT +
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSK 218
Query: 220 LEELEYADGAFYMEDG 235
+E L+ AD + +G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 23/205 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KRPKSFV----- 104
PIL+D + S+ G+ +G +G GKSTL+ ++ T+G + + K F+
Sbjct: 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 105 ----FQNPDHQVVMPTVEADVAFGLGNLNLTHDEV--RSKVAKALDAV-----GMSNYLQ 153
D+ + TV+ ++ LG T +EV +K+A A D + G +
Sbjct: 415 NQIGLVQQDNILFSDTVKENIL--LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTA 213
LSGGQKQR++IA + + + EA+ L S + T
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL---SKDRTT 529
Query: 214 LWVTHRLEELEYADGAFYMEDGKIV 238
L V HRL + +AD +E+G IV
Sbjct: 530 LIVAHRLSTITHADKIVVIENGHIV 554
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF QN
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQN--- 107
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD-AVGMSNYLQRPV-------QTLS 160
+MP T++ ++ + +++DE R + V KA +S + ++ TLS
Sbjct: 108 SWIMPGTIKENI------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 161
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHR 219
GGQ+ R+++A A+ + + + + E+ V L+ + T + VT +
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSK 218
Query: 220 LEELEYADGAFYMEDG 235
+E L+ AD + +G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 33/226 (14%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N+ +S KK+ P+L+D +F + GQ L+GP G GK+T++ +L G
Sbjct: 355 IEFKNVWFSYDKKK----PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410
Query: 94 HVYV--------KRPK-----SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V KR V Q D + TV+ ++ + GN T +E++ + A
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQ--DTILFSTTVKENLKY--GNPGATDEEIK-EAA 465
Query: 141 KALDAVGMSNYLQRPVQT--------LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXS 192
K + +L +T LS GQ+Q +AI A K+
Sbjct: 466 KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ + A+ L+ T++ + HRL ++ AD + DG+IV
Sbjct: 526 TEKSIQAAMWKLMEGK---TSIIIAHRLNTIKNADLIIVLRDGEIV 568
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--YVKRP---------- 100
IL+ S+ + G W+L G NG GK+TLL +L T+G V + K P
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 101 --------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
S + + + + V+ V + +G DE+R++ + L VG S
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 153 QRPVQTLSGGQKQRVAIAGAL 173
Q+ + LS G+KQRV IA AL
Sbjct: 156 QQYIGYLSTGEKQRVXIARAL 176
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P L +FS+P G L ++G GCGKS+LL L + GHV +K ++V Q
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA--W 76
Query: 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD----AVGMSNYLQRPVQTLSGGQKQRV 167
+ ++ ++ FG + V A D G + LSGGQKQRV
Sbjct: 77 IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 136
Query: 168 AIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA------VKNLLGDSGEV---TALWVTH 218
++A A+ + D ++A +N++G G + T + VTH
Sbjct: 137 SLARAVYSNADI---------YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187
Query: 219 RLEELEYADGAFYMEDGKI 237
+ L D M GKI
Sbjct: 188 SMSYLPQVDVIIVMSGGKI 206
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 40/222 (18%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-------- 96
KK + +L+ + + G++ +++GP+G GKST L+ L L G +
Sbjct: 10 KKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKA 69
Query: 97 -------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--------SKVAK 141
V+ VFQ + + P + L N+ L +VR +K +
Sbjct: 70 KDTNLNKVREEVGMVFQRFN---LFPHMTV-----LNNITLAPMKVRKWPREKAEAKAME 121
Query: 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAV 201
LD VG+ + +LSGGQ QRVAIA ALA K+ + G + +V
Sbjct: 122 LLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI-MLFDEPTSALDPEMVGEVLSV 180
Query: 202 KNLLGDSGEVTALWVTHRL-------EELEYADGAFYMEDGK 236
L + G +T + VTH + + + + DG + +E+GK
Sbjct: 181 MKQLANEG-MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 221
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 40/222 (18%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-------- 96
KK + +L+ + + G++ +++GP+G GKST L+ L L G +
Sbjct: 31 KKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKA 90
Query: 97 -------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--------SKVAK 141
V+ VFQ + + P + L N+ L +VR +K +
Sbjct: 91 KDTNLNKVREEVGMVFQRFN---LFPHMTV-----LNNITLAPMKVRKWPREKAEAKAME 142
Query: 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAV 201
LD VG+ + +LSGGQ QRVAIA ALA K+ + G + +V
Sbjct: 143 LLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI-MLFDEPTSALDPEMVGEVLSV 201
Query: 202 KNLLGDSGEVTALWVTHRL-------EELEYADGAFYMEDGK 236
L + G +T + VTH + + + + DG + +E+GK
Sbjct: 202 MKQLANEG-MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
V +L+ +F++ G++ L+GPNG GKST+ +L L +PT G V + + DH
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY---DH 88
Query: 111 QVVMPTVEA----DVAFGLG-NLNLTHDEVRSKVAKALDAVGM--------SNYLQ---- 153
+ V A + FG N+ + R+ + + AV M S + Q
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT 148
Query: 154 ---RPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGE 210
LSGGQ+Q VA+A AL ++ +Q V+ LL +S E
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL----RVQRLLYESPE 204
Query: 211 ---VTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247
T L +T +L E A ++++G + Q + ++
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF Q
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ---F 107
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD-AVGMSNYLQRPV-------QTLS 160
+MP T++ ++ G +++DE R + V KA +S + ++ TLS
Sbjct: 108 SWIMPGTIKENIIAG-----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 162
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHR 219
GGQ+ R+++A A+ + + + + E+ V L+ + T + VT +
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSK 219
Query: 220 LEELEYADGAFYMEDG 235
+E L+ AD + +G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 78 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM---RNMHKICKGRTVI 192
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ RL ++ AD ME GKIV Q +L+
Sbjct: 193 IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + + S+ G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q D+ ++ ++ +++ +++ +K+A A D + G + +
Sbjct: 84 QVGVVLQ--DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL K+ + ++ +N+ T +
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM---RNMHKICKGRTVI 198
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ RL ++ AD ME GKIV Q +L+
Sbjct: 199 IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF Q
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ---F 77
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ-----------T 158
+MP T++ ++ + +++DE R + + A + + + + T
Sbjct: 78 SWIMPGTIKENI------IGVSYDEYRYR--SVIKACQLEEDISKFAEKDNIVLGEGGIT 129
Query: 159 LSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVT 217
LSGGQ+ R+++A A+ + + + + E+ V L+ + T + VT
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVT 186
Query: 218 HRLEELEYADGAFYMEDG 235
++E L+ AD + +G
Sbjct: 187 SKMEHLKKADKILILHEG 204
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF Q
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ---F 107
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD-AVGMSNYLQRPV-------QTLS 160
+MP T++ ++ FG +++DE R + V KA +S + ++ TLS
Sbjct: 108 SWIMPGTIKENIIFG-----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 162
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHR 219
GQ+ ++++A A+ + + + + E+ V L+ + T + VT +
Sbjct: 163 EGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSK 219
Query: 220 LEELEYADGAFYMEDG 235
+E L+ AD + +G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPK 101
S+ K Q V + + FS ++ +++G NG GK+TL+K+LAG LKP G PK
Sbjct: 358 SLKKTQGDFVLNVEEGEFS--DSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---DIPK 412
Query: 102 SFVFQNPDHQVVMPTVEADVA---FGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
V P Q + P V F + + ++ V K L + + + + VQ
Sbjct: 413 LNVSMKP--QKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL---RIDDIIDQEVQH 467
Query: 159 LSGGQKQRVAIAGAL 173
LSGG+ QRVAI AL
Sbjct: 468 LSGGELQRVAIVLAL 482
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 26/186 (13%)
Query: 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--------YVKRPKSFVFQN-------- 107
GQ+ L+G NG GKST LK+LAG KP G +K + QN
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 108 -------PDHQVVMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTL 159
P + +P +G L L ++ V + + + + N L+R ++ L
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKL 222
Query: 160 SGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHR 219
SGG+ QR AI + + V + + +++LL + V + V H
Sbjct: 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV--ICVEHD 280
Query: 220 LEELEY 225
L L+Y
Sbjct: 281 LSVLDY 286
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPKSFVFQ 106
P+L + ++ G + GPNG GK+TLLK ++ LKP G + + + K +F
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82
Query: 107 NPDHQVVMPTVEAD----VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
P+ +V + + L + + +E+ AL++V + + L++ + LS G
Sbjct: 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD----ALESVEVLD-LKKKLGELSQG 137
Query: 163 QKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
+RV +A L ++ + V++++ +L + G + + EE
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG----IVIISSREE 193
Query: 223 LEYAD 227
L Y D
Sbjct: 194 LSYCD 198
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 30/220 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
V +L+ +F++ G++ L+GPNG GKST+ +L L +PT G V + + DH
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY---DH 88
Query: 111 QVVMPTVEA----DVAFGLG-NLNLTHDEVRSKVAKALDAVGM--------SNYLQ---- 153
+ V A + FG N+ + R+ + + AV M S + Q
Sbjct: 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT 148
Query: 154 ---RPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGE 210
L+ GQ+Q VA+A AL ++ +Q V+ LL +S E
Sbjct: 149 EVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL----RVQRLLYESPE 204
Query: 211 ---VTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247
T L +T +L E A ++++G + Q + ++
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + ++ G++ + G G GK++LL ++ G L+ + G + SF Q
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ---FS 108
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD--------AVGMSNYLQRPVQTLSG 161
+MP T++ ++ FG +++DE R K V KA A + L TLSG
Sbjct: 109 WIMPGTIKENIIFG-----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + + V E+ V L+ + T + VT ++
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK---TRILVTSKM 220
Query: 221 EELEYADGAFYMEDG 235
E L AD + G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
P+L+D +F + GQL + G G GK++LL ++ G L+P+ G + SF Q
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ---F 107
Query: 111 QVVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD-AVGMSNYLQRPV-------QTLS 160
+MP T++ ++ + +++DE R + V KA +S + ++ TLS
Sbjct: 108 SWIMPGTIKENI------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS 161
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHR 219
GQ+ ++++A A+ + + + + E+ V L+ + T + VT +
Sbjct: 162 EGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK---TRILVTSK 218
Query: 220 LEELEYADGAFYMEDG 235
+E L+ AD + +G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + ++ G++ + G G GK++LL ++ G L+ + G + SF Q
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ---FS 108
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD--------AVGMSNYLQRPVQTLSG 161
+MP T++ ++ FG +++DE R K V KA A + L TLSG
Sbjct: 109 WIMPGTIKENIIFG-----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + + V E+ V L+ + T + VT ++
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK---TRILVTSKM 220
Query: 221 EELEYADGAFYMEDG 235
E L AD + G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 26/214 (12%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT------NGHVYVKRPKSFVFQN 107
++ VP GQ+ L+G NG GK+T L +AGL++ NG +P + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 108 -----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQRPVQ 157
P+ + + P + G N E + + L+ + + L++
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 158 TLSGGQKQRVAIAGALAEACKVXXX---XXXXXXXXXSDQFGVIEAVKNLLGDSGEVTAL 214
TLSGG++Q +AI AL K+ S+ F VI+ + G L
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ----EGTTILL 194
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ L L+ A + +E G+IV++ +L+
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 35 ECSNLNYSITKKQR----KLVPILRDCSFSVPSGQ-----LWMLLGPNGCGKSTLLKVLA 85
E S+L+ S K + K++ L D V +G+ + +LGPNG GK+T ++L
Sbjct: 256 EVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILV 315
Query: 86 GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL----THDEVRSKVAK 141
G + G V + K + P Q + P + V L N + T +V K
Sbjct: 316 GEITADEGSVTPE--KQILSYKP--QRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTK 371
Query: 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAV 201
L+ + L+ V LSGG+ Q++ IA LA+ + +++ V +A+
Sbjct: 372 RLN---LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428
Query: 202 KNLLGDSGEVTALWVTHRLEELEY 225
K + + VT + + H L +Y
Sbjct: 429 KRVTRERKAVTFI-IDHDLSIHDY 451
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 25/189 (13%)
Query: 59 FSVPSGQ---LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQ--------- 106
F +P+ + + +LG NG GK+T+LK+LAG + P G K K V +
Sbjct: 17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76
Query: 107 ------NPDHQVV--MPTVEADVAFGLGNLN--LTHDEVRSKVAKALDAVGMSNYLQRPV 156
+ + ++V + VE F G +N LT + R K + + + M+N +
Sbjct: 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDA 136
Query: 157 QTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWV 216
LSGG QR+ +A +L V ++ + +A++ LL + + V
Sbjct: 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK---YVIVV 193
Query: 217 THRLEELEY 225
H L L+Y
Sbjct: 194 DHDLIVLDY 202
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + ++ G++ + G G GK++LL ++ G L+ + G + SF Q
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ---FS 108
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD--------AVGMSNYLQRPVQTLSG 161
+MP T++ ++ G +++DE R K V KA A + L TLSG
Sbjct: 109 WIMPGTIKENIIRG-----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + + V E+ V L+ + T + VT ++
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK---TRILVTSKM 220
Query: 221 EELEYADGAFYMEDG 235
E L AD + G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + ++ G++ + G G GK++LL ++ G L+ + G + SF Q
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ---FS 108
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD--------AVGMSNYLQRPVQTLSG 161
+MP T++ ++ G +++DE R K V KA A + L TLSG
Sbjct: 109 WIMPGTIKENIISG-----VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + + V E+ V L+ + T + VT ++
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK---TRILVTSKM 220
Query: 221 EELEYADGAFYMEDG 235
E L AD + G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + ++ G++ + G G GK++LL ++ G L+ + G + SF Q
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ---FS 108
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKALD--------AVGMSNYLQRPVQTLSG 161
+MP T++ ++ + +++DE R K V KA A + L TLSG
Sbjct: 109 WIMPGTIKENI------IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 162
Query: 162 GQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + + V E+ V L+ + T + VT ++
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK---TRILVTSKM 219
Query: 221 EELEYADGAFYMEDG 235
E L AD + G
Sbjct: 220 EHLRKADKILILHQG 234
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
P + D +F ++GPNG GKSTL+ VL G L PT+G VY
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 726
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112
+L + + + + GPNGCGKSTL + +A +G + ++ ++
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIAN--GQVDGFPTQEECRTVYVEHDIDGT 501
Query: 113 VMPTVEADVAF--GLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAI 169
T D F G+G T + ++ K+ + G ++ + P+ LSGG K ++A+
Sbjct: 502 HSDTSVLDFVFESGVG----TKEAIKDKLIE----FGFTDEXIAXPISALSGGWKXKLAL 553
Query: 170 AGAL 173
A A+
Sbjct: 554 ARAV 557
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
P + D +F ++GPNG GKSTL+ VL G L PT+G VY
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112
+L + + + + GPNGCGKSTL + +A +G + ++ ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIAN--GQVDGFPTQEECRTVYVEHDIDGT 507
Query: 113 VMPTVEADVAF--GLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAI 169
T D F G+G T + ++ K+ + G ++ + P+ LSGG K ++A+
Sbjct: 508 HSDTSVLDFVFESGVG----TKEAIKDKLIE----FGFTDEXIAXPISALSGGWKXKLAL 559
Query: 170 AGAL 173
A A+
Sbjct: 560 ARAV 563
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
P + D +F ++GPNG GKSTL+ VL G L PT+G VY
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112
+L + + + + GPNGCGKSTL++ +A +G + ++ ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYVEHDIDGT 507
Query: 113 VMPTVEADVAF--GLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAI 169
T D F G+G T + ++ K+ + G ++ + P+ LSGG K ++A+
Sbjct: 508 HSDTSVLDFVFESGVG----TKEAIKDKLIE----FGFTDEMIAMPISALSGGWKMKLAL 559
Query: 170 AGAL 173
A A+
Sbjct: 560 ARAV 563
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 20/137 (14%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT--NGHVYV-----------KR 99
IL+ + VP G++ L+GPNG GKSTL K+LAG + T G + + +R
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHD----EVRSKVAKALDAVGM-SNYLQ 153
+ +F + V +P V L L + E +KV KAL+ + +YL
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 154 RPV-QTLSGGQKQRVAI 169
R + + SGG+K+R I
Sbjct: 138 RYLNEGFSGGEKKRNEI 154
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPKSFVFQN---PDHQVVM 114
+G+ ++LGPNG GK+TLL+ ++GLL P +G+++ V++ ++++ + P+ +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIG 87
Query: 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174
TV D+ + L ++ ++ KAL +G L+R + LS GQ V + ALA
Sbjct: 88 VTVN-DIVYLYEELKGLDRDLFLEMLKAL-KLG-EEILRRKLYKLSAGQSVLVRTSLALA 144
Query: 175 EACKV 179
++
Sbjct: 145 SQPEI 149
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------KSFV 104
S V +G++ L+GPNG GKSTLL +AG+ + +P ++++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYL 78
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
Q P L + T E+ + VA AL + + L R LSGG+
Sbjct: 79 SQQQTPPFATPVWH---YLTLHQHDKTRTELLNDVAGAL---ALDDKLGRSTNQLSGGEW 132
Query: 165 QRVAIA 170
QRV +A
Sbjct: 133 QRVRLA 138
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------KSFVF 105
S V +G++ L+GPNG GKSTLL +AG+ + +P ++++
Sbjct: 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165
Q P L + T E+ + VA AL + + L R LSGG+ Q
Sbjct: 80 QQQTPPFATPVWH---YLTLHQHDKTRTELLNDVAGAL---ALDDKLGRSTNQLSGGEWQ 133
Query: 166 RVAIA 170
RV +A
Sbjct: 134 RVRLA 138
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86
+ +L+ S+ K ILR S V G++ ++GPNG GKSTL LAG
Sbjct: 2 LSIKDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86
+ +L+ S+ K ILR S V G++ ++GPNG GKSTL LAG
Sbjct: 21 LSIKDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------KSFVF 105
S V +G++ L+GPNG GKSTLL AG + +P ++++
Sbjct: 20 SGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165
Q P L + T E+ + VA AL + + L R LSGG+ Q
Sbjct: 80 QQQTPPFATPVWH---YLTLHQHDKTRTELLNDVAGAL---ALDDKLGRSTNQLSGGEWQ 133
Query: 166 RVAIA 170
RV +A
Sbjct: 134 RVRLA 138
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------KSFV 104
S V +G++ L+GPNG GKSTLL AG + +P ++++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYL 78
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
Q P L + T E+ + VA AL + + L R LSGG+
Sbjct: 79 SQQQTPPFATPVWH---YLTLHQHDKTRTELLNDVAGAL---ALDDKLGRSTNQLSGGEW 132
Query: 165 QRVAIA 170
QRV +A
Sbjct: 133 QRVRLA 138
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPK---- 101
+L+ S +G + ++G +G GKST L+ + L KP+ G + V R K
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 102 ---------------SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV 146
+ VFQ+ + M +E + + L L+ + R + K L V
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 147 GMSNYLQ--RPVQTLSGGQKQRVAIAGALA 174
G+ Q PV LSGGQ+QRV+IA ALA
Sbjct: 141 GIDERAQGKYPVH-LSGGQQQRVSIARALA 169
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
IL + SFS+ GQ LLG G GKSTLL LL T G + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQI 79
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH--VYVKRPKSFVFQN 107
VP G L ++ GP G GKST L + L T H + ++ P FV ++
Sbjct: 121 VPRG-LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES 168
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 61 VPSGQLWMLLGPNGCGKSTLLKVLA 85
VP G L LLGP GCGK+ L K +A
Sbjct: 38 VPKGAL--LLGPPGCGKTLLAKAVA 60
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108
+P + F + ++ GP+G GKSTLLK L + + P SF F P
Sbjct: 4 IPTTENLYFQGSMSRPIVISGPSGTGKSTLLKKL-----------FAEYPDSFGFSVP 50
>pdb|3OHR|A Chain A, Crystal Structure Of Fructokinase From Bacillus Subtilis
Complexed With Adp
Length = 303
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 66 LWMLLGPN-GCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN--PDH 110
L++ +G G G ++L GL P GH+Y++R V+Q P H
Sbjct: 128 LYITIGTGIGAGAIVEGRLLQGLSHPEXGHIYIRRHPDDVYQGXCPYH 175
>pdb|3LM9|A Chain A, Crystal Structure Of Fructokinase With Adp And Fructose
Bound In The Active Site
Length = 302
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 66 LWMLLGPN-GCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN--PDH 110
L++ +G G G ++L GL P GH+Y++R V+Q P H
Sbjct: 127 LYITIGTGIGAGAIVEGRLLQGLSHPEXGHIYIRRHPDDVYQGKCPYH 174
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 110 HQVVMPTVEADVAFGLGNLNLTHDE------VRSKVAKALD---AVGMSNY-LQRPVQTL 159
H+ ++ ++ F L NLNLT E + ++ K L+ VG+ L R TL
Sbjct: 407 HEFTELSISEELEF-LKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTL 465
Query: 160 SGGQKQRVAIA 170
SGG+ QR+ +A
Sbjct: 466 SGGESQRIRLA 476
>pdb|3J26|A Chain A, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|B Chain B, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|C Chain C, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|D Chain D, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|E Chain E, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|F Chain F, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|G Chain G, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|H Chain H, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|I Chain I, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|J Chain J, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|K Chain K, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|L Chain L, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|M Chain M, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
Length = 508
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 90 PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
P +++VK+ + ++QN ++Q+ P DV + NLNLT + + ++ A
Sbjct: 323 PRKLYLFVKQSDNVIYQNLNNQITTP----DVFLQINNLNLTWNNQQGILSGA 371
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 29 ESGVAIECSNLNYSITKKQ-RKLVPILRDCSFSVPSGQLWMLLGP 72
E GV + C N +Y + + +++ +LR+ VP LW+L GP
Sbjct: 375 EQGVVLCCFNNSYKLNPQSMARMLAVLRE----VPDSVLWLLSGP 415
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 29 ESGVAIECSNLNYSITKKQ-RKLVPILRDCSFSVPSGQLWMLLGP 72
E GV + C N +Y + + +++ +LR+ VP LW+L GP
Sbjct: 375 EQGVVLCCFNNSYKLNPQSMARMLAVLRE----VPDSVLWLLSGP 415
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKS 78
VA+ ++ YS K R L +L+D V S ++ ++ G GCGK+
Sbjct: 129 VAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKT 175
>pdb|1XC3|A Chain A, Structure Of A Putative Fructokinase From Bacillus
Subtilis
Length = 302
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 66 LWMLLGPN-GCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN--PDH 110
L++ +G G G ++L GL P GH+Y++R V+Q P H
Sbjct: 127 LYITIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDVYQGKCPYH 174
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEAC--KVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSG 209
L +P TLSGG+ QRV +A L + D + V + L D+G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 210 EVTALWVTHRLEELEYAD 227
+ T L + H L+ ++ AD
Sbjct: 899 D-TVLVIEHNLDVIKTAD 915
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEAC--KVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSG 209
L +P TLSGG+ QRV +A L + D + V + L D+G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 210 EVTALWVTHRLEELEYAD 227
+ T L + H L+ ++ AD
Sbjct: 597 D-TVLVIEHNLDVIKTAD 613
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 134 EVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIA 170
E+RS++ LD VG+ L R TLSGG+ QR+ +A
Sbjct: 497 EIRSRLGFLLD-VGLEYLSLSRAAATLSGGEAQRIRLA 533
>pdb|3J17|A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1058
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
VEADV L ++ +TH+ +R + +DA SNY
Sbjct: 999 VEADVTLMLRDIGITHEIIRPSTPELIDAC--SNY 1031
>pdb|3IZ3|A Chain A, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZX|A Chain A, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1058
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
VEADV L ++ +TH+ +R + +DA SNY
Sbjct: 999 VEADVTLMLRDIGITHEIIRPSTPELIDAC--SNY 1031
>pdb|1ZQ1|C Chain C, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|D Chain D, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 633
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
+V+ +E A G+G + L V +KV D +S ++R +Q +SGG
Sbjct: 581 EEVIQQNIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQEISGG 633
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEAC--KVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSG 209
L +P TLSGG+ QRV +A L + D + V + L D+G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 210 EVTALWVTHRLEELEYAD 227
+ T L + H L+ ++ AD
Sbjct: 899 D-TVLVIEHNLDVIKTAD 915
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,849,536
Number of Sequences: 62578
Number of extensions: 265498
Number of successful extensions: 1287
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 147
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)