Query 024738
Match_columns 263
No_of_seqs 276 out of 1226
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4.4E-65 9.6E-70 428.5 24.1 221 33-261 2-239 (240)
2 COG1135 AbcC ABC-type metal io 100.0 1.4E-60 3E-65 419.5 23.1 224 33-258 1-242 (339)
3 COG1125 OpuBA ABC-type proline 100.0 1E-59 2.2E-64 404.1 21.2 210 33-249 1-226 (309)
4 COG1116 TauB ABC-type nitrate/ 100.0 1.9E-59 4.2E-64 403.5 22.9 199 33-238 3-212 (248)
5 COG1120 FepC ABC-type cobalami 100.0 5.2E-59 1.1E-63 406.7 23.3 210 33-249 2-229 (258)
6 COG1136 SalX ABC-type antimicr 100.0 5.7E-58 1.2E-62 393.1 24.7 203 33-238 1-221 (226)
7 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.4E-58 1.4E-62 398.2 25.2 210 32-249 3-228 (254)
8 COG1127 Ttg2A ABC-type transpo 100.0 6.8E-58 1.5E-62 390.3 24.0 222 31-259 6-246 (263)
9 COG1122 CbiO ABC-type cobalt t 100.0 7.3E-58 1.6E-62 397.6 24.2 214 32-250 2-230 (235)
10 COG3842 PotA ABC-type spermidi 100.0 3.8E-58 8.2E-63 417.2 22.0 223 32-261 4-240 (352)
11 COG3839 MalK ABC-type sugar tr 100.0 8.6E-58 1.9E-62 412.8 23.7 211 33-250 3-225 (338)
12 COG3638 ABC-type phosphate/pho 100.0 1.2E-56 2.7E-61 381.6 20.8 211 32-248 2-237 (258)
13 COG1124 DppF ABC-type dipeptid 100.0 4.3E-56 9.2E-61 380.3 23.5 214 32-249 2-232 (252)
14 TIGR02314 ABC_MetN D-methionin 100.0 4E-55 8.8E-60 400.6 28.0 214 33-249 1-231 (343)
15 PRK13537 nodulation ABC transp 100.0 5.2E-55 1.1E-59 395.0 27.6 211 31-249 5-228 (306)
16 COG2884 FtsE Predicted ATPase 100.0 6.7E-56 1.4E-60 365.9 19.8 203 33-242 1-220 (223)
17 COG1118 CysA ABC-type sulfate/ 100.0 6.2E-56 1.3E-60 389.5 20.4 210 33-249 2-228 (345)
18 COG1131 CcmA ABC-type multidru 100.0 4.1E-55 8.9E-60 393.2 25.8 210 33-249 4-227 (293)
19 PRK11650 ugpC glycerol-3-phosp 100.0 6.9E-55 1.5E-59 401.4 27.2 210 33-249 3-225 (356)
20 COG4555 NatA ABC-type Na+ tran 100.0 3.5E-56 7.6E-61 370.7 16.6 210 33-249 1-223 (245)
21 PRK11432 fbpC ferric transport 100.0 1.6E-54 3.5E-59 398.1 27.8 210 33-249 6-227 (351)
22 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-54 3.5E-59 398.5 27.2 210 33-249 4-225 (353)
23 TIGR03258 PhnT 2-aminoethylpho 100.0 5E-54 1.1E-58 396.2 27.3 211 33-249 5-229 (362)
24 cd03261 ABC_Org_Solvent_Resist 100.0 4.9E-54 1.1E-58 374.4 25.6 208 34-248 1-226 (235)
25 PRK13536 nodulation factor exp 100.0 7.6E-54 1.6E-58 392.2 27.9 211 31-249 39-262 (340)
26 PRK09452 potA putrescine/sperm 100.0 6.9E-54 1.5E-58 396.7 27.8 211 32-249 13-235 (375)
27 PRK13651 cobalt transporter AT 100.0 8E-54 1.7E-58 387.0 27.4 215 33-249 2-255 (305)
28 PRK13637 cbiO cobalt transport 100.0 1E-53 2.2E-58 383.4 27.6 216 33-249 2-235 (287)
29 COG1117 PstB ABC-type phosphat 100.0 8.7E-55 1.9E-59 365.3 19.2 217 32-258 6-248 (253)
30 PRK10851 sulfate/thiosulfate t 100.0 1.6E-53 3.4E-58 392.0 28.0 210 33-249 2-227 (353)
31 PRK11607 potG putrescine trans 100.0 1.9E-53 4.1E-58 394.3 28.6 212 31-249 17-240 (377)
32 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-53 3.3E-58 385.0 27.2 211 31-249 2-225 (303)
33 PRK13643 cbiO cobalt transport 100.0 2E-53 4.4E-58 381.6 27.4 215 33-249 1-234 (288)
34 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-53 2.7E-58 368.4 24.8 206 34-246 1-219 (220)
35 cd03296 ABC_CysA_sulfate_impor 100.0 2.3E-53 5.1E-58 371.1 26.7 210 33-249 2-227 (239)
36 PRK13634 cbiO cobalt transport 100.0 2.4E-53 5.2E-58 381.5 27.2 216 33-249 2-236 (290)
37 PRK11000 maltose/maltodextrin 100.0 2.4E-53 5.1E-58 393.1 27.2 210 33-249 3-224 (369)
38 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-53 3.1E-58 366.1 23.7 201 34-241 1-213 (213)
39 PRK13646 cbiO cobalt transport 100.0 3.8E-53 8.3E-58 379.5 26.9 216 33-249 2-236 (286)
40 TIGR00960 3a0501s02 Type II (G 100.0 2.4E-53 5.2E-58 365.4 24.3 199 33-237 1-216 (216)
41 PRK11153 metN DL-methionine tr 100.0 3.6E-53 7.8E-58 388.6 26.9 214 33-249 1-231 (343)
42 PRK13650 cbiO cobalt transport 100.0 4.3E-53 9.3E-58 377.9 26.4 215 32-249 3-230 (279)
43 PRK13647 cbiO cobalt transport 100.0 5.8E-53 1.3E-57 376.1 26.5 209 32-246 3-225 (274)
44 COG0411 LivG ABC-type branched 100.0 5.5E-54 1.2E-58 367.5 19.0 220 32-259 3-249 (250)
45 PRK13641 cbiO cobalt transport 100.0 7.7E-53 1.7E-57 377.7 27.2 215 33-249 2-235 (287)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.1E-53 1.1E-57 364.5 24.9 207 34-243 1-218 (220)
47 PRK15079 oligopeptide ABC tran 100.0 1E-52 2.2E-57 383.6 27.8 218 31-249 6-252 (331)
48 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-52 2.7E-57 365.9 27.0 210 33-249 1-222 (236)
49 PRK11629 lolD lipoprotein tran 100.0 1.5E-52 3.2E-57 364.8 26.7 208 32-242 4-228 (233)
50 PRK13631 cbiO cobalt transport 100.0 2E-52 4.3E-57 380.2 28.2 216 32-249 20-266 (320)
51 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-52 2.5E-57 364.7 25.3 207 34-248 1-222 (232)
52 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-52 2.5E-57 365.1 25.3 213 33-248 1-230 (233)
53 PRK11831 putative ABC transpor 100.0 1.7E-52 3.7E-57 372.1 26.9 211 32-249 6-234 (269)
54 cd03301 ABC_MalK_N The N-termi 100.0 1E-52 2.2E-57 360.6 24.5 201 34-241 1-213 (213)
55 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-52 2.3E-57 365.8 24.8 207 34-248 1-232 (236)
56 PRK13638 cbiO cobalt transport 100.0 1.5E-52 3.4E-57 372.7 26.1 210 33-249 1-226 (271)
57 PRK13635 cbiO cobalt transport 100.0 2.1E-52 4.5E-57 373.6 26.8 214 32-249 4-230 (279)
58 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-52 4.2E-57 389.6 27.5 210 32-249 2-229 (402)
59 COG3840 ThiQ ABC-type thiamine 100.0 3.3E-53 7.2E-58 347.9 19.5 207 33-249 1-220 (231)
60 PRK13636 cbiO cobalt transport 100.0 2.7E-52 5.9E-57 373.5 26.9 213 32-249 4-232 (283)
61 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.3E-53 2E-57 362.1 23.0 201 34-237 1-218 (218)
62 TIGR03522 GldA_ABC_ATP gliding 100.0 2.3E-52 5.1E-57 376.9 26.6 207 33-248 2-221 (301)
63 PRK13644 cbiO cobalt transport 100.0 2.4E-52 5.2E-57 372.2 26.3 211 33-249 1-225 (274)
64 PRK13633 cobalt transporter AT 100.0 3E-52 6.5E-57 372.6 26.6 217 32-249 3-234 (280)
65 cd03266 ABC_NatA_sodium_export 100.0 1.7E-52 3.7E-57 360.4 24.0 205 33-241 1-218 (218)
66 cd03263 ABC_subfamily_A The AB 100.0 2.2E-52 4.8E-57 360.2 24.3 206 34-246 1-219 (220)
67 PRK13652 cbiO cobalt transport 100.0 4.9E-52 1.1E-56 370.7 27.1 212 33-249 3-228 (277)
68 PRK10070 glycine betaine trans 100.0 3.8E-52 8.3E-57 387.4 27.2 216 32-249 3-255 (400)
69 PRK09493 glnQ glutamine ABC tr 100.0 6.6E-52 1.4E-56 362.0 26.8 209 33-249 1-226 (240)
70 cd03256 ABC_PhnC_transporter A 100.0 4.1E-52 8.9E-57 363.0 25.4 209 34-248 1-234 (241)
71 PRK13640 cbiO cobalt transport 100.0 5E-52 1.1E-56 371.6 26.5 215 31-249 3-233 (282)
72 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.1E-52 6.6E-57 370.5 24.9 208 35-249 26-251 (269)
73 TIGR02315 ABC_phnC phosphonate 100.0 3.6E-52 7.8E-57 364.0 24.8 209 33-247 1-234 (243)
74 PRK13649 cbiO cobalt transport 100.0 6.8E-52 1.5E-56 370.0 26.9 215 33-249 2-235 (280)
75 TIGR01188 drrA daunorubicin re 100.0 2.8E-52 6.1E-57 376.5 24.6 195 52-249 7-214 (302)
76 cd03269 ABC_putative_ATPase Th 100.0 4.3E-52 9.3E-57 356.2 24.3 200 34-241 1-210 (210)
77 cd03226 ABC_cobalt_CbiO_domain 100.0 2.2E-52 4.7E-57 356.9 22.3 194 35-238 1-205 (205)
78 PRK13639 cbiO cobalt transport 100.0 9.8E-52 2.1E-56 368.4 26.5 210 33-248 1-226 (275)
79 PRK11248 tauB taurine transpor 100.0 8E-52 1.7E-56 365.2 25.7 204 33-243 1-215 (255)
80 PRK11264 putative amino-acid A 100.0 1E-51 2.3E-56 362.7 26.3 209 33-249 3-234 (250)
81 PRK10584 putative ABC transpor 100.0 1.1E-51 2.3E-56 357.9 25.9 206 32-240 5-227 (228)
82 TIGR01186 proV glycine betaine 100.0 4.2E-52 9.1E-57 383.0 24.6 196 52-249 7-220 (363)
83 COG1137 YhbG ABC-type (unclass 100.0 1.3E-53 2.7E-58 355.0 13.0 218 33-259 4-238 (243)
84 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.7E-52 1.9E-56 361.8 25.3 210 34-249 1-226 (242)
85 PRK11308 dppF dipeptide transp 100.0 1.7E-51 3.7E-56 375.1 28.1 217 32-249 4-245 (327)
86 TIGR02673 FtsE cell division A 100.0 6E-52 1.3E-56 356.1 23.6 197 33-236 1-214 (214)
87 cd03260 ABC_PstB_phosphate_tra 100.0 7E-52 1.5E-56 358.9 24.2 202 34-245 1-226 (227)
88 PRK13632 cbiO cobalt transport 100.0 1E-51 2.3E-56 367.4 25.9 215 31-249 5-232 (271)
89 TIGR02211 LolD_lipo_ex lipopro 100.0 8.5E-52 1.8E-56 356.8 24.5 203 33-238 1-220 (221)
90 PRK11124 artP arginine transpo 100.0 1.8E-51 4E-56 359.6 26.7 208 33-248 2-230 (242)
91 PRK13645 cbiO cobalt transport 100.0 1.6E-51 3.5E-56 369.4 26.8 215 33-248 6-240 (289)
92 PRK10908 cell division protein 100.0 1.6E-51 3.5E-56 355.6 25.3 200 33-239 1-217 (222)
93 cd03224 ABC_TM1139_LivF_branch 100.0 8.2E-52 1.8E-56 356.9 23.4 204 34-247 1-220 (222)
94 PRK13648 cbiO cobalt transport 100.0 2.4E-51 5.2E-56 364.6 27.0 215 31-249 5-232 (269)
95 COG4175 ProV ABC-type proline/ 100.0 3.4E-52 7.3E-57 366.8 21.1 215 33-249 4-255 (386)
96 PRK13548 hmuV hemin importer A 100.0 2.8E-51 6E-56 362.3 26.6 209 33-248 2-230 (258)
97 TIGR03415 ABC_choXWV_ATP choli 100.0 2.4E-51 5.2E-56 379.8 27.2 197 51-249 37-255 (382)
98 cd03225 ABC_cobalt_CbiO_domain 100.0 8.6E-52 1.9E-56 354.4 22.5 197 35-236 1-211 (211)
99 PRK13642 cbiO cobalt transport 100.0 2.6E-51 5.6E-56 366.0 26.4 214 33-249 4-230 (277)
100 cd03292 ABC_FtsE_transporter F 100.0 1.5E-51 3.2E-56 353.5 23.7 197 34-237 1-214 (214)
101 PRK10619 histidine/lysine/argi 100.0 4.3E-51 9.3E-56 360.6 27.3 210 32-249 4-242 (257)
102 cd03235 ABC_Metallic_Cations A 100.0 1.1E-51 2.4E-56 354.4 22.8 199 35-241 1-213 (213)
103 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-51 2.8E-56 352.7 23.1 196 34-241 1-208 (208)
104 PRK10895 lipopolysaccharide AB 100.0 2.6E-51 5.5E-56 358.5 25.5 209 33-249 3-227 (241)
105 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-51 8E-56 357.6 26.4 207 33-248 2-231 (242)
106 TIGR00972 3a0107s01c2 phosphat 100.0 4.2E-51 9E-56 358.6 26.6 207 33-249 1-233 (247)
107 PRK11247 ssuB aliphatic sulfon 100.0 3E-51 6.6E-56 362.0 25.9 200 32-244 11-219 (257)
108 cd03264 ABC_drug_resistance_li 100.0 1.6E-51 3.5E-56 352.9 23.4 198 34-241 1-211 (211)
109 COG4152 ABC-type uncharacteriz 100.0 2E-52 4.4E-57 357.0 17.4 208 33-248 2-219 (300)
110 PRK11022 dppD dipeptide transp 100.0 3.7E-51 8.1E-56 372.8 27.0 215 33-249 3-244 (326)
111 PRK11300 livG leucine/isoleuci 100.0 4.1E-51 8.9E-56 359.9 26.2 211 32-249 4-244 (255)
112 COG0444 DppD ABC-type dipeptid 100.0 1.9E-51 4.1E-56 365.1 23.7 222 33-256 1-251 (316)
113 TIGR02769 nickel_nikE nickel i 100.0 4.8E-51 1E-55 362.0 26.2 216 33-249 2-241 (265)
114 PRK10771 thiQ thiamine transpo 100.0 7.9E-51 1.7E-55 353.7 26.6 215 33-257 1-227 (232)
115 PRK10575 iron-hydroxamate tran 100.0 5.8E-51 1.3E-55 361.4 26.1 210 32-248 10-237 (265)
116 PRK11614 livF leucine/isoleuci 100.0 5.1E-51 1.1E-55 355.8 25.2 207 33-249 5-227 (237)
117 PRK15093 antimicrobial peptide 100.0 7.4E-51 1.6E-55 371.5 27.2 215 33-249 3-249 (330)
118 PRK09473 oppD oligopeptide tra 100.0 1E-50 2.2E-55 370.4 28.1 217 31-249 10-252 (330)
119 PRK11231 fecE iron-dicitrate t 100.0 6.7E-51 1.5E-55 359.0 25.8 208 33-248 2-227 (255)
120 PRK14242 phosphate transporter 100.0 9.8E-51 2.1E-55 357.2 26.7 209 31-249 4-238 (253)
121 PRK14268 phosphate ABC transpo 100.0 1.2E-50 2.7E-55 358.0 27.3 209 31-249 10-243 (258)
122 PRK10253 iron-enterobactin tra 100.0 9.3E-51 2E-55 360.1 26.5 212 30-248 4-233 (265)
123 TIGR03005 ectoine_ehuA ectoine 100.0 1E-50 2.2E-55 357.1 26.3 209 34-249 1-237 (252)
124 PRK11701 phnK phosphonate C-P 100.0 1.6E-50 3.5E-55 357.1 26.8 213 31-249 4-242 (258)
125 cd03298 ABC_ThiQ_thiamine_tran 100.0 9.7E-51 2.1E-55 348.0 24.7 199 34-241 1-211 (211)
126 cd03262 ABC_HisP_GlnQ_permease 100.0 6.1E-51 1.3E-55 349.4 23.3 196 34-237 1-213 (213)
127 PRK15112 antimicrobial peptide 100.0 1.2E-50 2.7E-55 359.8 25.8 217 32-249 3-240 (267)
128 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-50 2.7E-55 350.7 24.4 207 33-241 1-228 (228)
129 PRK14250 phosphate ABC transpo 100.0 2.1E-50 4.5E-55 353.2 25.6 205 33-249 3-222 (241)
130 PRK14247 phosphate ABC transpo 100.0 2.8E-50 6.1E-55 353.8 26.5 208 33-249 3-235 (250)
131 PRK14273 phosphate ABC transpo 100.0 3.7E-50 8E-55 353.9 26.9 208 32-249 6-239 (254)
132 PRK14267 phosphate ABC transpo 100.0 3.7E-50 8.1E-55 353.5 26.9 209 32-249 3-238 (253)
133 TIGR01277 thiQ thiamine ABC tr 100.0 2.3E-50 5E-55 346.5 24.8 200 34-242 1-212 (213)
134 COG1123 ATPase components of v 100.0 1.3E-50 2.9E-55 382.5 25.4 227 30-257 277-528 (539)
135 PRK09984 phosphonate/organopho 100.0 3.8E-50 8.3E-55 355.4 26.6 208 32-246 3-240 (262)
136 COG0410 LivF ABC-type branched 100.0 1.6E-50 3.4E-55 343.8 22.7 218 32-258 2-235 (237)
137 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-50 3.9E-55 350.7 23.6 204 34-247 1-220 (230)
138 TIGR03873 F420-0_ABC_ATP propo 100.0 3.1E-50 6.8E-55 354.9 25.3 207 34-248 2-226 (256)
139 TIGR01978 sufC FeS assembly AT 100.0 3.7E-50 8.1E-55 351.0 24.8 207 34-248 1-234 (243)
140 PRK11144 modC molybdate transp 100.0 3.6E-50 7.8E-55 369.9 25.9 201 33-249 1-219 (352)
141 TIGR03740 galliderm_ABC gallid 100.0 3.8E-50 8.3E-55 347.3 24.5 200 34-245 1-210 (223)
142 TIGR02323 CP_lyasePhnK phospho 100.0 9.3E-50 2E-54 351.0 26.7 211 33-249 3-239 (253)
143 PRK10744 pstB phosphate transp 100.0 8.9E-50 1.9E-54 352.8 26.5 207 33-249 13-245 (260)
144 cd03300 ABC_PotA_N PotA is an 100.0 7.7E-50 1.7E-54 347.6 25.6 209 34-249 1-221 (232)
145 cd03299 ABC_ModC_like Archeal 100.0 1.1E-49 2.3E-54 347.4 26.5 208 34-249 1-220 (235)
146 PRK14235 phosphate transporter 100.0 1.5E-49 3.2E-54 352.9 27.1 210 30-249 16-252 (267)
147 TIGR00968 3a0106s01 sulfate AB 100.0 1.2E-49 2.6E-54 347.5 25.9 209 34-249 1-221 (237)
148 PRK15056 manganese/iron transp 100.0 1.2E-49 2.6E-54 354.3 26.1 209 33-248 6-230 (272)
149 TIGR02142 modC_ABC molybdenum 100.0 9.6E-50 2.1E-54 367.4 26.0 201 38-249 4-222 (354)
150 PRK14274 phosphate ABC transpo 100.0 1.8E-49 3.9E-54 350.6 26.7 209 31-249 10-244 (259)
151 COG4181 Predicted ABC-type tra 100.0 1.4E-50 3E-55 329.6 18.0 205 33-240 6-227 (228)
152 PRK14241 phosphate transporter 100.0 1.5E-49 3.2E-54 350.9 26.2 208 33-249 4-243 (258)
153 PRK10762 D-ribose transporter 100.0 5.4E-50 1.2E-54 384.3 25.3 208 32-247 3-229 (501)
154 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-49 2.7E-54 382.6 27.4 205 32-248 10-229 (510)
155 COG4598 HisP ABC-type histidin 100.0 7.2E-51 1.6E-55 333.9 16.0 221 32-260 5-254 (256)
156 PRK13547 hmuV hemin importer A 100.0 1.4E-49 3.1E-54 354.0 25.6 210 33-249 1-245 (272)
157 PRK13549 xylose transporter AT 100.0 9E-50 1.9E-54 383.2 25.7 208 32-247 4-231 (506)
158 PRK10419 nikE nickel transport 100.0 2.2E-49 4.8E-54 352.0 26.3 216 33-249 3-242 (268)
159 cd03267 ABC_NatA_like Similar 100.0 8.2E-50 1.8E-54 348.5 23.1 189 51-241 34-236 (236)
160 PRK14256 phosphate ABC transpo 100.0 4.2E-49 9.2E-54 346.8 27.8 208 33-249 4-237 (252)
161 PRK14269 phosphate ABC transpo 100.0 2.3E-49 4.9E-54 347.5 25.9 207 33-249 2-231 (246)
162 PRK14259 phosphate ABC transpo 100.0 2.4E-49 5.2E-54 352.0 26.3 208 31-249 11-254 (269)
163 PRK09700 D-allose transporter 100.0 1.2E-49 2.5E-54 382.7 25.8 209 32-248 4-234 (510)
164 PRK14270 phosphate ABC transpo 100.0 3.2E-49 6.9E-54 347.4 26.4 208 32-249 3-236 (251)
165 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-49 3.3E-54 341.5 23.8 195 34-241 2-214 (214)
166 PRK14239 phosphate transporter 100.0 3.4E-49 7.3E-54 347.1 26.5 208 32-249 4-237 (252)
167 PRK14248 phosphate ABC transpo 100.0 3.4E-49 7.4E-54 350.6 26.6 208 32-249 20-253 (268)
168 PRK10261 glutathione transport 100.0 2.1E-49 4.5E-54 389.0 27.7 218 31-249 311-554 (623)
169 COG1123 ATPase components of v 100.0 1.3E-49 2.8E-54 375.8 25.2 219 32-252 4-248 (539)
170 PRK13546 teichoic acids export 100.0 6.4E-49 1.4E-53 348.4 28.1 218 32-252 3-236 (264)
171 PRK14245 phosphate ABC transpo 100.0 4.1E-49 9E-54 346.5 26.6 208 32-249 2-235 (250)
172 PRK10261 glutathione transport 100.0 1.5E-49 3.4E-54 389.9 25.7 216 31-248 10-258 (623)
173 PRK10247 putative ABC transpor 100.0 1.8E-49 4E-54 343.8 23.0 203 31-243 5-222 (225)
174 PRK14251 phosphate ABC transpo 100.0 6.1E-49 1.3E-53 345.5 26.6 208 32-249 3-236 (251)
175 PRK10418 nikD nickel transport 100.0 5.9E-49 1.3E-53 346.5 26.5 208 33-249 4-231 (254)
176 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-49 5.1E-54 381.4 25.9 210 34-249 1-259 (520)
177 PRK14237 phosphate transporter 100.0 8.1E-49 1.8E-53 348.2 27.2 209 31-249 18-252 (267)
178 PRK14272 phosphate ABC transpo 100.0 9.2E-49 2E-53 344.4 27.1 209 32-249 3-237 (252)
179 cd03252 ABCC_Hemolysin The ABC 100.0 5.9E-49 1.3E-53 342.6 25.7 206 34-249 1-226 (237)
180 PRK09544 znuC high-affinity zi 100.0 4.8E-49 1E-53 346.9 25.2 203 32-248 3-209 (251)
181 PRK14240 phosphate transporter 100.0 9.5E-49 2.1E-53 344.0 26.7 207 33-249 3-235 (250)
182 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-49 3.6E-54 344.0 21.0 201 34-241 23-224 (224)
183 PRK14271 phosphate ABC transpo 100.0 1.6E-48 3.4E-53 348.0 27.8 209 31-249 19-252 (276)
184 TIGR03608 L_ocin_972_ABC putat 100.0 3.1E-49 6.7E-54 337.2 22.1 189 36-232 1-206 (206)
185 PRK14262 phosphate ABC transpo 100.0 1.2E-48 2.6E-53 343.4 26.4 207 33-249 3-235 (250)
186 TIGR02982 heterocyst_DevA ABC 100.0 6E-49 1.3E-53 339.3 24.1 201 34-237 2-219 (220)
187 PRK14275 phosphate ABC transpo 100.0 1.3E-48 2.9E-53 350.2 27.1 210 30-249 36-271 (286)
188 TIGR03269 met_CoM_red_A2 methy 100.0 7.4E-49 1.6E-53 378.0 27.3 215 31-248 277-517 (520)
189 COG4525 TauB ABC-type taurine 100.0 1.4E-49 3E-54 329.9 19.0 207 33-244 3-220 (259)
190 PRK14238 phosphate transporter 100.0 1.1E-48 2.3E-53 348.1 26.1 209 31-249 22-256 (271)
191 PRK14249 phosphate ABC transpo 100.0 1.7E-48 3.7E-53 342.8 26.5 208 32-249 3-236 (251)
192 cd03251 ABCC_MsbA MsbA is an e 100.0 1.2E-48 2.5E-53 340.0 25.0 206 34-249 1-226 (234)
193 PRK14244 phosphate ABC transpo 100.0 1.7E-48 3.7E-53 342.8 26.1 207 33-249 5-238 (251)
194 PRK14254 phosphate ABC transpo 100.0 2.5E-48 5.4E-53 348.2 27.6 208 31-249 37-270 (285)
195 PRK14255 phosphate ABC transpo 100.0 2E-48 4.3E-53 342.4 26.3 208 32-249 4-237 (252)
196 KOG0058 Peptide exporter, ABC 100.0 4E-49 8.8E-54 378.2 23.7 239 2-255 440-698 (716)
197 PRK14261 phosphate ABC transpo 100.0 2.4E-48 5.3E-53 342.1 26.8 219 31-259 4-249 (253)
198 PRK14246 phosphate ABC transpo 100.0 2E-48 4.3E-53 344.0 25.9 211 30-249 7-242 (257)
199 TIGR01184 ntrCD nitrate transp 100.0 7.1E-49 1.5E-53 341.3 22.3 191 54-246 1-202 (230)
200 PRK14258 phosphate ABC transpo 100.0 2.8E-48 6.1E-53 343.5 26.5 210 32-249 6-246 (261)
201 COG2274 SunT ABC-type bacterio 100.0 5.1E-49 1.1E-53 387.1 23.9 208 32-249 470-697 (709)
202 PRK14253 phosphate ABC transpo 100.0 2.6E-48 5.7E-53 341.0 26.0 207 33-249 3-234 (249)
203 PRK11288 araG L-arabinose tran 100.0 1.8E-48 3.8E-53 373.9 26.5 204 32-243 3-224 (501)
204 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-48 2.8E-53 336.7 23.0 195 33-241 2-220 (220)
205 PRK14236 phosphate transporter 100.0 4.6E-48 1E-52 344.2 27.0 208 32-249 24-257 (272)
206 PRK14243 phosphate transporter 100.0 2.8E-48 6E-53 344.2 25.5 207 32-249 9-249 (264)
207 PRK15134 microcin C ABC transp 100.0 1.8E-48 4E-53 376.0 26.0 215 32-248 4-246 (529)
208 COG4559 ABC-type hemin transpo 100.0 9.3E-49 2E-53 328.5 20.7 216 33-257 1-238 (259)
209 PRK14260 phosphate ABC transpo 100.0 4E-48 8.6E-53 342.1 25.8 208 32-249 6-244 (259)
210 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.3E-48 5.1E-53 339.1 23.5 207 34-249 1-227 (238)
211 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-48 4.8E-53 373.0 25.6 206 33-246 1-228 (500)
212 TIGR02770 nickel_nikD nickel i 100.0 2.4E-48 5.2E-53 337.8 23.4 196 53-249 1-216 (230)
213 TIGR02324 CP_lyasePhnL phospho 100.0 3.1E-48 6.6E-53 335.4 23.7 197 33-232 1-222 (224)
214 cd03254 ABCC_Glucan_exporter_l 100.0 4.7E-48 1E-52 335.1 24.9 205 33-248 2-226 (229)
215 PRK10938 putative molybdenum t 100.0 1.6E-48 3.5E-53 373.1 23.7 201 33-248 3-224 (490)
216 PRK15134 microcin C ABC transp 100.0 2.8E-48 6E-53 374.7 25.1 217 31-249 273-516 (529)
217 PRK10982 galactose/methyl gala 100.0 2.5E-48 5.5E-53 371.9 24.4 204 36-247 1-222 (491)
218 PRK13545 tagH teichoic acids e 100.0 1E-47 2.2E-52 364.1 28.1 216 30-250 18-234 (549)
219 CHL00131 ycf16 sulfate ABC tra 100.0 1.1E-47 2.4E-52 337.6 26.3 206 32-245 6-238 (252)
220 PRK14265 phosphate ABC transpo 100.0 9.3E-48 2E-52 342.7 26.1 207 32-249 19-259 (274)
221 cd03234 ABCG_White The White s 100.0 6.1E-48 1.3E-52 334.3 24.0 205 33-241 3-226 (226)
222 PRK14257 phosphate ABC transpo 100.0 1.6E-47 3.4E-52 349.2 27.7 211 31-249 78-314 (329)
223 cd03253 ABCC_ATM1_transporter 100.0 9.9E-48 2.2E-52 334.5 25.2 205 34-249 1-225 (236)
224 COG4604 CeuD ABC-type enteroch 100.0 1.2E-49 2.6E-54 330.6 12.4 217 33-257 1-233 (252)
225 PRK14263 phosphate ABC transpo 100.0 2.3E-47 5E-52 337.9 27.6 208 31-249 6-246 (261)
226 PRK11174 cysteine/glutathione 100.0 8.8E-48 1.9E-52 375.3 27.0 205 33-249 349-573 (588)
227 PRK13543 cytochrome c biogenes 100.0 1E-47 2.2E-52 330.6 23.7 192 32-234 10-212 (214)
228 COG1129 MglA ABC-type sugar tr 100.0 8E-48 1.7E-52 361.4 24.1 204 32-243 7-229 (500)
229 PRK13538 cytochrome c biogenes 100.0 9.7E-48 2.1E-52 328.3 22.4 189 33-232 1-202 (204)
230 PRK14252 phosphate ABC transpo 100.0 4.2E-47 9.2E-52 336.6 27.1 207 32-248 15-249 (265)
231 PRK09580 sufC cysteine desulfu 100.0 3.2E-47 7E-52 333.6 26.0 206 33-246 1-233 (248)
232 PRK11176 lipid transporter ATP 100.0 2.2E-47 4.7E-52 372.0 27.3 204 33-249 341-568 (582)
233 PRK13549 xylose transporter AT 100.0 6E-48 1.3E-52 370.6 23.1 213 31-247 257-493 (506)
234 COG4161 ArtP ABC-type arginine 100.0 3E-48 6.5E-53 313.7 17.5 218 33-258 2-240 (242)
235 PRK03695 vitamin B12-transport 100.0 1.4E-47 3.1E-52 336.7 23.3 200 35-248 2-222 (248)
236 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.4E-47 3.1E-52 379.9 25.9 200 33-249 451-674 (686)
237 cd03248 ABCC_TAP TAP, the Tran 100.0 1.1E-47 2.3E-52 332.5 21.8 198 31-237 9-226 (226)
238 PRK11160 cysteine/glutathione 100.0 2.3E-47 4.9E-52 371.6 26.6 204 32-249 337-563 (574)
239 cd03244 ABCC_MRP_domain2 Domai 100.0 2.2E-47 4.8E-52 329.3 23.3 195 33-242 2-220 (221)
240 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.1E-47 6.7E-52 339.4 24.5 201 33-249 2-226 (275)
241 PRK09700 D-allose transporter 100.0 1.4E-47 3.1E-52 368.3 24.0 206 31-245 263-495 (510)
242 COG4987 CydC ABC-type transpor 100.0 9.2E-48 2E-52 358.3 21.7 203 33-249 336-562 (573)
243 PRK14266 phosphate ABC transpo 100.0 5.8E-47 1.2E-51 332.7 25.6 207 33-249 3-235 (250)
244 TIGR03375 type_I_sec_LssB type 100.0 2.3E-47 5E-52 378.9 25.7 203 33-249 463-689 (694)
245 COG4988 CydD ABC-type transpor 100.0 2.9E-47 6.3E-52 359.0 24.8 202 33-249 320-544 (559)
246 COG1132 MdlB ABC-type multidru 100.0 3.8E-47 8.2E-52 369.5 26.4 206 33-249 328-553 (567)
247 cd03231 ABC_CcmA_heme_exporter 100.0 3.2E-47 6.9E-52 324.5 22.6 185 34-232 1-198 (201)
248 cd03250 ABCC_MRP_domain1 Domai 100.0 3E-47 6.5E-52 325.0 21.9 196 34-236 1-204 (204)
249 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.8E-47 1E-51 377.5 26.6 201 33-249 477-701 (710)
250 PRK10790 putative multidrug tr 100.0 8.6E-47 1.9E-51 368.6 27.4 201 33-249 340-564 (592)
251 PRK13539 cytochrome c biogenes 100.0 5.6E-47 1.2E-51 324.4 22.9 189 33-234 2-200 (207)
252 PRK14264 phosphate ABC transpo 100.0 1.4E-46 3E-51 339.9 26.4 209 31-249 43-290 (305)
253 PRK15064 ABC transporter ATP-b 100.0 6.2E-47 1.3E-51 365.4 24.3 205 33-248 1-242 (530)
254 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-46 2.5E-51 321.4 23.0 183 33-241 3-202 (202)
255 COG4608 AppF ABC-type oligopep 100.0 3.9E-47 8.5E-52 331.0 20.3 195 32-252 3-203 (268)
256 PRK13540 cytochrome c biogenes 100.0 8.7E-47 1.9E-51 321.4 22.0 186 33-231 1-198 (200)
257 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.7E-46 5.8E-51 319.8 25.1 189 33-243 6-207 (207)
258 TIGR00958 3a01208 Conjugate Tr 100.0 1.3E-46 2.8E-51 374.3 26.4 202 33-249 478-703 (711)
259 TIGR01166 cbiO cobalt transpor 100.0 5E-47 1.1E-51 320.2 19.9 169 52-222 6-189 (190)
260 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-46 3.9E-51 373.2 27.3 202 33-249 473-698 (708)
261 cd03288 ABCC_SUR2 The SUR doma 100.0 2.5E-46 5.5E-51 330.4 25.2 207 32-249 18-244 (257)
262 PRK11819 putative ABC transpor 100.0 1E-46 2.2E-51 365.8 24.6 206 32-248 5-250 (556)
263 TIGR01257 rim_protein retinal- 100.0 1.4E-46 3E-51 398.6 27.3 213 31-249 1935-2160(2272)
264 TIGR02633 xylG D-xylose ABC tr 100.0 8.7E-47 1.9E-51 361.9 23.5 210 32-245 256-489 (500)
265 cd03214 ABC_Iron-Siderophores_ 100.0 4.8E-47 1E-51 318.1 18.7 179 35-241 1-180 (180)
266 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.4E-46 1.4E-50 332.0 27.0 200 31-249 37-248 (282)
267 cd03247 ABCC_cytochrome_bd The 100.0 2.5E-46 5.3E-51 313.2 22.1 166 34-241 1-178 (178)
268 PRK13657 cyclic beta-1,2-gluca 100.0 5.5E-46 1.2E-50 362.8 27.6 206 33-249 334-559 (588)
269 TIGR02203 MsbA_lipidA lipid A 100.0 2.4E-46 5.1E-51 363.8 24.8 204 33-249 330-557 (571)
270 PRK10762 D-ribose transporter 100.0 2.3E-46 5.1E-51 359.2 23.2 205 31-247 255-483 (501)
271 cd03246 ABCC_Protease_Secretio 100.0 2.4E-46 5.2E-51 311.9 20.3 160 34-237 1-173 (173)
272 cd03230 ABC_DR_subfamily_A Thi 100.0 3.6E-46 7.7E-51 310.9 21.3 160 34-237 1-173 (173)
273 KOG0055 Multidrug/pheromone ex 100.0 1.4E-46 3E-51 378.0 22.2 209 33-250 350-578 (1228)
274 PRK15064 ABC transporter ATP-b 100.0 3.5E-46 7.7E-51 360.2 24.3 203 32-249 318-526 (530)
275 TIGR03771 anch_rpt_ABC anchore 100.0 4.8E-46 1.1E-50 322.1 22.4 188 59-249 1-202 (223)
276 TIGR01189 ccmA heme ABC export 100.0 4.4E-46 9.5E-51 316.5 21.5 184 34-230 1-196 (198)
277 TIGR01842 type_I_sec_PrtD type 100.0 9.7E-46 2.1E-50 358.1 26.8 207 33-248 316-542 (544)
278 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.5E-46 1.2E-50 360.4 24.9 206 32-248 3-248 (552)
279 cd03213 ABCG_EPDR ABCG transpo 100.0 8.3E-46 1.8E-50 314.3 22.9 177 33-241 3-194 (194)
280 COG3845 ABC-type uncharacteriz 100.0 4.1E-46 9E-51 344.6 22.6 203 32-242 3-223 (501)
281 cd03215 ABC_Carb_Monos_II This 100.0 4.3E-46 9.2E-51 312.9 20.6 163 32-237 3-182 (182)
282 cd03229 ABC_Class3 This class 100.0 5.1E-46 1.1E-50 311.3 20.6 162 34-236 1-178 (178)
283 TIGR01257 rim_protein retinal- 100.0 9E-46 1.9E-50 392.4 27.7 211 32-249 927-1150(2272)
284 PRK10938 putative molybdenum t 100.0 5.1E-46 1.1E-50 355.9 22.9 206 31-242 258-486 (490)
285 cd03223 ABCD_peroxisomal_ALDP 100.0 7.9E-46 1.7E-50 307.2 21.0 162 34-236 1-164 (166)
286 cd03232 ABC_PDR_domain2 The pl 100.0 1.2E-45 2.5E-50 312.8 22.5 176 33-241 3-192 (192)
287 PRK11288 araG L-arabinose tran 100.0 4.4E-46 9.6E-51 357.3 22.4 205 32-247 256-484 (501)
288 TIGR01846 type_I_sec_HlyB type 100.0 3E-45 6.5E-50 363.8 29.0 207 33-249 455-681 (694)
289 TIGR01192 chvA glucan exporter 100.0 2.1E-45 4.5E-50 358.6 27.4 206 33-249 334-559 (585)
290 KOG0057 Mitochondrial Fe/S clu 100.0 7.8E-46 1.7E-50 345.7 22.9 201 33-249 351-575 (591)
291 PRK15439 autoinducer 2 ABC tra 100.0 5.6E-46 1.2E-50 357.3 22.6 206 31-248 266-492 (510)
292 COG4172 ABC-type uncharacteriz 100.0 1.9E-45 4.2E-50 332.7 24.4 225 29-255 272-523 (534)
293 TIGR02204 MsbA_rel ABC transpo 100.0 2.5E-45 5.3E-50 357.1 26.6 204 33-249 337-564 (576)
294 PRK10789 putative multidrug tr 100.0 3.1E-45 6.6E-50 356.4 26.9 203 33-249 313-539 (569)
295 PRK13541 cytochrome c biogenes 100.0 1.5E-45 3.3E-50 312.6 21.4 183 33-229 1-192 (195)
296 cd03217 ABC_FeS_Assembly ABC-t 100.0 2E-45 4.4E-50 313.2 22.2 171 34-243 1-189 (200)
297 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.1E-45 6.7E-50 355.2 26.1 207 31-249 320-532 (552)
298 PRK11819 putative ABC transpor 100.0 3.5E-45 7.7E-50 355.0 26.2 207 31-249 322-534 (556)
299 COG4148 ModC ABC-type molybdat 100.0 1.5E-46 3.3E-51 326.3 14.6 187 55-249 15-219 (352)
300 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.2E-45 4.7E-50 322.7 21.4 189 52-246 8-205 (246)
301 PRK13409 putative ATPase RIL; 100.0 3.1E-45 6.6E-50 356.6 23.7 199 31-243 338-537 (590)
302 PRK10982 galactose/methyl gala 100.0 2.6E-45 5.7E-50 351.1 22.8 207 31-246 248-478 (491)
303 cd03216 ABC_Carb_Monos_I This 100.0 4.6E-45 9.9E-50 301.7 21.0 161 34-239 1-162 (163)
304 cd03290 ABCC_SUR1_N The SUR do 100.0 6E-45 1.3E-49 313.8 22.1 187 35-236 2-218 (218)
305 TIGR01187 potA spermidine/putr 100.0 3.9E-45 8.5E-50 333.1 21.9 179 69-249 1-191 (325)
306 PRK10535 macrolide transporter 100.0 1.5E-44 3.3E-49 355.9 27.0 212 32-247 3-231 (648)
307 COG1134 TagH ABC-type polysacc 100.0 9.1E-45 2E-49 311.0 22.0 203 50-254 39-242 (249)
308 cd03228 ABCC_MRP_Like The MRP 100.0 6.4E-45 1.4E-49 302.8 20.2 158 34-236 1-171 (171)
309 COG1119 ModF ABC-type molybden 100.0 4.1E-45 9E-50 313.0 19.2 208 30-242 28-256 (257)
310 PRK15177 Vi polysaccharide exp 100.0 7.2E-45 1.6E-49 312.9 20.8 188 53-247 2-191 (213)
311 PLN03211 ABC transporter G-25; 100.0 7.5E-45 1.6E-49 357.8 23.7 195 51-248 81-296 (659)
312 PRK10636 putative ABC transpor 100.0 1.8E-44 3.8E-49 354.8 24.4 201 31-247 310-516 (638)
313 PLN03130 ABC transporter C fam 100.0 2.5E-44 5.5E-49 381.2 26.8 202 33-249 1237-1462(1622)
314 PLN03232 ABC transporter C fam 100.0 2.5E-44 5.4E-49 380.3 26.4 202 33-249 1234-1459(1495)
315 PTZ00265 multidrug resistance 100.0 2.2E-44 4.7E-49 378.8 25.2 212 33-255 1165-1459(1466)
316 PRK10636 putative ABC transpor 100.0 3.3E-44 7.2E-49 352.9 24.1 203 33-247 1-235 (638)
317 KOG0055 Multidrug/pheromone ex 100.0 2.8E-44 6.1E-49 361.3 23.2 208 33-249 987-1214(1228)
318 PRK11147 ABC transporter ATPas 100.0 5.9E-44 1.3E-48 351.2 24.4 204 31-246 317-526 (635)
319 COG4172 ABC-type uncharacteriz 100.0 4.8E-44 1E-48 323.7 21.1 223 31-255 4-254 (534)
320 PRK11147 ABC transporter ATPas 100.0 1E-43 2.2E-48 349.5 25.2 203 33-248 3-243 (635)
321 PRK10522 multidrug transporter 100.0 6.8E-44 1.5E-48 345.4 23.3 193 33-242 322-532 (547)
322 TIGR02868 CydC thiol reductant 100.0 6.3E-44 1.4E-48 344.2 22.2 173 33-220 334-529 (529)
323 TIGR02857 CydD thiol reductant 100.0 7.1E-44 1.5E-48 343.8 22.2 186 33-232 320-529 (529)
324 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-43 2.5E-48 344.4 23.4 197 32-241 336-552 (555)
325 COG4586 ABC-type uncharacteriz 100.0 1.5E-44 3.2E-49 313.0 14.9 198 51-250 37-248 (325)
326 PTZ00265 multidrug resistance 100.0 1.5E-43 3.2E-48 372.5 24.5 198 33-235 382-655 (1466)
327 COG4619 ABC-type uncharacteriz 100.0 7.1E-45 1.5E-49 295.4 10.7 195 33-237 3-212 (223)
328 PTZ00243 ABC transporter; Prov 100.0 3.3E-43 7.2E-48 372.0 26.0 202 33-249 1308-1534(1560)
329 PLN03073 ABC transporter F fam 100.0 6.1E-43 1.3E-47 346.5 26.2 200 31-246 506-712 (718)
330 TIGR00957 MRP_assoc_pro multi 100.0 6.1E-43 1.3E-47 370.2 27.8 202 33-249 1284-1509(1522)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.7E-43 5.9E-48 285.6 19.2 141 34-236 1-144 (144)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.4E-43 7.3E-48 310.3 19.5 189 37-240 4-219 (255)
333 COG4674 Uncharacterized ABC-ty 100.0 1.1E-43 2.4E-48 294.6 15.0 219 32-260 4-246 (249)
334 COG4167 SapF ABC-type antimicr 100.0 7.2E-43 1.6E-47 287.5 17.9 217 32-249 3-240 (267)
335 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-42 2.6E-47 290.8 19.0 155 37-247 4-162 (177)
336 TIGR00954 3a01203 Peroxysomal 100.0 1.4E-42 3E-47 342.6 21.9 192 32-234 450-653 (659)
337 COG0488 Uup ATPase components 100.0 1.8E-42 4E-47 331.2 21.4 203 33-247 3-239 (530)
338 TIGR00955 3a01204 The Eye Pigm 100.0 4.9E-42 1.1E-46 336.6 23.4 195 51-248 38-256 (617)
339 TIGR00956 3a01205 Pleiotropic 100.0 7.5E-42 1.6E-46 358.9 25.8 209 32-244 758-989 (1394)
340 TIGR01271 CFTR_protein cystic 100.0 8.8E-42 1.9E-46 360.6 25.7 200 33-248 1217-1440(1490)
341 PLN03130 ABC transporter C fam 100.0 9.9E-42 2.1E-46 361.5 24.0 203 33-249 614-829 (1622)
342 COG4107 PhnK ABC-type phosphon 100.0 3.9E-42 8.5E-47 281.2 16.1 215 32-256 5-249 (258)
343 TIGR00957 MRP_assoc_pro multi 100.0 1.6E-41 3.6E-46 359.3 25.3 208 33-248 636-850 (1522)
344 cd03238 ABC_UvrA The excision 100.0 1.3E-41 2.8E-46 284.4 19.3 156 51-237 8-166 (176)
345 COG1101 PhnK ABC-type uncharac 100.0 6.5E-42 1.4E-46 287.9 16.3 211 33-244 1-234 (263)
346 PLN03232 ABC transporter C fam 100.0 2.3E-41 5E-46 357.8 24.0 203 33-249 614-829 (1495)
347 COG4618 ArpD ABC-type protease 100.0 2.5E-41 5.4E-46 313.2 21.0 208 33-249 334-561 (580)
348 COG0396 sufC Cysteine desulfur 100.0 2.6E-40 5.6E-45 280.8 23.6 214 32-253 2-238 (251)
349 PLN03140 ABC transporter G fam 100.0 1.9E-40 4.1E-45 348.2 26.6 209 33-244 867-1106(1470)
350 PLN03073 ABC transporter F fam 100.0 8.6E-41 1.9E-45 331.2 20.3 201 29-247 173-430 (718)
351 KOG0056 Heavy metal exporter H 100.0 4.7E-41 1E-45 309.8 16.5 210 33-253 537-766 (790)
352 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6.3E-40 1.4E-44 268.8 19.3 156 35-236 1-157 (157)
353 TIGR01271 CFTR_protein cystic 100.0 6.3E-40 1.4E-44 346.6 24.3 190 52-249 440-637 (1490)
354 PRK13409 putative ATPase RIL; 100.0 2.5E-40 5.4E-45 322.2 19.0 181 38-235 78-287 (590)
355 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-39 3.3E-44 341.5 23.2 195 51-247 74-299 (1394)
356 PTZ00243 ABC transporter; Prov 100.0 2.4E-39 5.2E-44 342.8 22.8 191 51-248 673-870 (1560)
357 cd03270 ABC_UvrA_I The excisio 100.0 4.2E-39 9.2E-44 279.4 19.1 184 51-241 8-226 (226)
358 COG4136 ABC-type uncharacteriz 100.0 2.1E-39 4.6E-44 259.3 15.5 192 33-232 2-207 (213)
359 COG4133 CcmA ABC-type transpor 100.0 1.2E-39 2.7E-44 269.0 14.2 180 33-223 2-193 (209)
360 COG0488 Uup ATPase components 100.0 1.8E-38 4E-43 303.7 22.1 203 30-248 318-525 (530)
361 PLN03140 ABC transporter G fam 100.0 5.5E-39 1.2E-43 337.2 19.2 196 51-248 178-427 (1470)
362 KOG0061 Transporter, ABC super 100.0 2.7E-38 5.8E-43 308.9 22.3 213 33-248 25-260 (613)
363 KOG0059 Lipid exporter ABCA1 a 100.0 1.1E-38 2.3E-43 323.2 19.1 211 32-249 563-788 (885)
364 COG5265 ATM1 ABC-type transpor 100.0 4.6E-38 9.9E-43 286.1 17.0 206 33-249 262-487 (497)
365 COG4778 PhnL ABC-type phosphon 100.0 2.4E-38 5.2E-43 257.8 12.7 199 33-234 4-227 (235)
366 KOG0054 Multidrug resistance-a 100.0 5.9E-37 1.3E-41 314.2 22.8 205 31-248 516-731 (1381)
367 KOG0054 Multidrug resistance-a 100.0 2.2E-36 4.7E-41 310.0 24.4 207 32-253 1137-1367(1381)
368 cd03271 ABC_UvrA_II The excisi 100.0 3.3E-35 7.1E-40 259.6 18.6 183 53-243 10-261 (261)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 5.6E-35 1.2E-39 248.7 14.8 154 55-234 14-190 (197)
370 COG4138 BtuD ABC-type cobalami 100.0 7.6E-36 1.6E-40 244.3 7.6 199 33-249 3-222 (248)
371 PF00005 ABC_tran: ABC transpo 100.0 1.5E-34 3.3E-39 230.9 12.2 120 54-187 1-137 (137)
372 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.7E-33 5.8E-38 240.8 16.2 182 33-237 5-211 (213)
373 COG1129 MglA ABC-type sugar tr 100.0 1.3E-32 2.9E-37 258.7 20.0 204 31-245 261-487 (500)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.1E-32 2.4E-37 240.8 13.4 185 34-233 4-234 (243)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 8.9E-33 1.9E-37 243.1 12.6 167 64-233 25-242 (251)
376 KOG0927 Predicted transporter 100.0 4.2E-33 9.2E-38 259.9 10.3 203 31-247 387-595 (614)
377 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3.1E-33 6.6E-38 240.6 4.9 186 33-234 5-204 (212)
378 PRK00635 excinuclease ABC subu 100.0 1.1E-30 2.3E-35 274.2 23.1 203 33-248 600-906 (1809)
379 PRK00349 uvrA excinuclease ABC 100.0 1.7E-30 3.7E-35 262.4 22.5 119 139-259 810-938 (943)
380 cd03240 ABC_Rad50 The catalyti 100.0 3.8E-31 8.2E-36 226.3 14.6 159 56-235 15-198 (204)
381 KOG0927 Predicted transporter 100.0 1.5E-31 3.3E-36 249.5 12.8 202 33-248 75-309 (614)
382 COG4178 ABC-type uncharacteriz 100.0 8.8E-31 1.9E-35 250.8 18.1 190 31-233 390-587 (604)
383 COG4170 SapD ABC-type antimicr 100.0 3.5E-31 7.5E-36 222.8 13.0 219 33-254 3-254 (330)
384 COG4615 PvdE ABC-type sideroph 100.0 2.9E-31 6.3E-36 240.1 11.6 202 33-241 322-530 (546)
385 COG1245 Predicted ATPase, RNas 100.0 4E-30 8.8E-35 236.1 16.4 189 32-233 341-530 (591)
386 KOG0062 ATPase component of AB 100.0 5.9E-31 1.3E-35 244.4 10.6 199 31-248 78-285 (582)
387 cd03276 ABC_SMC6_euk Eukaryoti 100.0 1.8E-29 3.9E-34 215.0 16.8 164 53-236 11-192 (198)
388 cd03275 ABC_SMC1_euk Eukaryoti 100.0 3.8E-30 8.3E-35 226.0 12.8 184 33-234 3-233 (247)
389 TIGR00630 uvra excinuclease AB 100.0 4.6E-29 1E-33 251.6 20.8 106 139-246 808-923 (924)
390 KOG0065 Pleiotropic drug resis 100.0 7.7E-30 1.7E-34 257.6 12.1 193 50-245 803-1018(1391)
391 KOG0066 eIF2-interacting prote 100.0 6E-29 1.3E-33 227.6 14.5 198 31-244 584-787 (807)
392 COG3845 ABC-type uncharacteriz 100.0 8.3E-28 1.8E-32 223.1 20.8 210 31-246 255-490 (501)
393 KOG0062 ATPase component of AB 100.0 1.4E-28 3.1E-33 228.6 14.7 197 30-240 359-560 (582)
394 KOG0060 Long-chain acyl-CoA tr 100.0 7.2E-28 1.6E-32 226.5 18.0 195 31-235 431-642 (659)
395 KOG2355 Predicted ABC-type tra 99.9 1.9E-26 4.1E-31 193.4 16.1 196 31-241 11-230 (291)
396 cd03280 ABC_MutS2 MutS2 homolo 99.9 6.7E-27 1.4E-31 199.2 9.4 147 53-241 16-172 (200)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1E-24 2.2E-29 187.8 16.5 171 54-236 14-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 2.9E-25 6.4E-30 204.2 11.1 180 38-233 79-287 (591)
399 KOG0064 Peroxisomal long-chain 99.9 2.3E-25 5.1E-30 207.6 8.9 186 32-232 480-681 (728)
400 COG2401 ABC-type ATPase fused 99.9 1.1E-23 2.4E-28 192.1 14.3 179 51-238 396-588 (593)
401 cd03227 ABC_Class2 ABC-type Cl 99.9 6.9E-24 1.5E-28 175.0 10.8 140 55-234 12-155 (162)
402 cd03239 ABC_SMC_head The struc 99.9 5.4E-24 1.2E-28 178.4 9.9 74 159-234 95-172 (178)
403 COG0178 UvrA Excinuclease ATPa 99.9 1.2E-22 2.6E-27 197.5 19.8 121 138-260 801-931 (935)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.9 2.5E-24 5.4E-29 186.4 6.1 152 52-242 18-175 (222)
405 PRK00635 excinuclease ABC subu 99.9 1.4E-22 3E-27 213.5 20.0 120 138-259 1678-1807(1809)
406 cd03241 ABC_RecN RecN ATPase i 99.9 4.3E-23 9.3E-28 184.2 13.8 76 158-236 170-249 (276)
407 KOG0066 eIF2-interacting prote 99.9 8.4E-24 1.8E-28 194.0 6.5 206 32-247 263-497 (807)
408 cd03243 ABC_MutS_homologs The 99.9 2.6E-23 5.6E-28 177.3 6.4 155 55-245 20-176 (202)
409 PRK00349 uvrA excinuclease ABC 99.9 4E-22 8.6E-27 201.9 15.0 130 116-249 438-586 (943)
410 cd03283 ABC_MutS-like MutS-lik 99.9 2E-22 4.3E-27 171.8 10.6 144 52-232 15-163 (199)
411 KOG0065 Pleiotropic drug resis 99.9 3.6E-22 7.9E-27 202.5 13.1 196 51-248 128-351 (1391)
412 TIGR00630 uvra excinuclease AB 99.9 1.8E-21 3.9E-26 196.8 13.7 105 142-248 470-583 (924)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.8 3.6E-21 7.9E-26 164.6 9.5 138 52-225 17-156 (204)
414 KOG0063 RNAse L inhibitor, ABC 99.8 6.1E-20 1.3E-24 168.1 11.6 176 52-234 350-532 (592)
415 cd03242 ABC_RecF RecF is a rec 99.8 1.3E-18 2.9E-23 154.8 16.0 76 156-237 181-269 (270)
416 smart00534 MUTSac ATPase domai 99.8 6.2E-20 1.4E-24 154.6 4.9 126 66-228 1-130 (185)
417 cd03284 ABC_MutS1 MutS1 homolo 99.8 1.3E-18 2.8E-23 150.1 10.7 153 52-246 19-179 (216)
418 cd03281 ABC_MSH5_euk MutS5 hom 99.8 6.8E-18 1.5E-22 145.3 12.5 135 53-224 18-158 (213)
419 TIGR01069 mutS2 MutS2 family p 99.7 2.8E-18 6.1E-23 171.7 7.5 152 33-224 295-449 (771)
420 PF02463 SMC_N: RecF/RecN/SMC 99.7 3.4E-17 7.3E-22 141.0 11.0 169 55-233 16-212 (220)
421 TIGR02858 spore_III_AA stage I 99.7 1.1E-15 2.3E-20 135.9 13.8 143 65-247 112-268 (270)
422 KOG0063 RNAse L inhibitor, ABC 99.6 2.6E-16 5.7E-21 144.5 5.1 169 62-233 98-287 (592)
423 cd03287 ABC_MSH3_euk MutS3 hom 99.6 1.4E-15 3.1E-20 131.6 9.4 136 52-224 19-158 (222)
424 PRK00409 recombination and DNA 99.6 1.6E-15 3.4E-20 152.3 10.8 147 57-239 319-469 (782)
425 cd01128 rho_factor Transcripti 99.6 4.1E-15 8.9E-20 130.8 11.8 167 59-239 11-213 (249)
426 PTZ00132 GTP-binding nuclear p 99.6 1.7E-14 3.6E-19 123.7 12.5 50 157-206 149-205 (215)
427 PRK07721 fliI flagellum-specif 99.6 1.2E-14 2.7E-19 136.9 12.5 179 52-245 147-340 (438)
428 PHA02562 46 endonuclease subun 99.6 4.2E-15 9.2E-20 144.5 9.1 80 154-237 464-555 (562)
429 TIGR00634 recN DNA repair prot 99.6 6.9E-15 1.5E-19 143.4 9.7 77 157-236 439-519 (563)
430 TIGR00618 sbcc exonuclease Sbc 99.6 1.3E-14 2.9E-19 150.4 11.1 86 148-235 940-1036(1042)
431 PRK13695 putative NTPase; Prov 99.5 3.1E-15 6.8E-20 124.4 3.3 151 66-240 2-156 (174)
432 cd03286 ABC_MSH6_euk MutS6 hom 99.5 1.8E-13 3.8E-18 118.2 13.8 138 52-224 18-157 (218)
433 COG0178 UvrA Excinuclease ATPa 99.5 1.3E-13 2.9E-18 135.0 14.0 115 143-259 465-588 (935)
434 PRK08533 flagellar accessory p 99.5 2.2E-13 4.7E-18 118.7 13.9 160 33-233 7-184 (230)
435 PRK01156 chromosome segregatio 99.5 9.5E-14 2.1E-18 142.1 13.4 80 154-233 797-883 (895)
436 PRK10869 recombination and rep 99.5 4.4E-14 9.5E-19 137.3 10.3 75 158-235 430-508 (553)
437 PF13304 AAA_21: AAA domain; P 99.5 5E-14 1.1E-18 120.1 7.6 67 155-223 233-302 (303)
438 PRK03918 chromosome segregatio 99.5 8E-14 1.7E-18 142.3 9.6 80 153-234 783-868 (880)
439 cd00820 PEPCK_HprK Phosphoenol 99.5 6E-14 1.3E-18 107.6 6.0 63 52-124 3-78 (107)
440 cd01124 KaiC KaiC is a circadi 99.5 8.1E-13 1.8E-17 110.3 13.2 143 66-233 1-163 (187)
441 PRK06793 fliI flagellum-specif 99.5 9.5E-13 2.1E-17 123.6 14.2 169 33-243 130-306 (432)
442 TIGR00606 rad50 rad50. This fa 99.4 1.1E-12 2.5E-17 138.8 11.5 80 154-233 1195-1289(1311)
443 PRK10246 exonuclease subunit S 99.4 9.6E-13 2.1E-17 136.5 10.7 81 152-234 943-1032(1047)
444 TIGR02168 SMC_prok_B chromosom 99.4 5E-13 1.1E-17 139.2 7.8 79 152-233 1083-1165(1179)
445 PRK13830 conjugal transfer pro 99.4 8.8E-12 1.9E-16 126.3 15.6 68 174-243 650-728 (818)
446 COG3910 Predicted ATPase [Gene 99.4 2.9E-12 6.3E-17 106.7 9.7 173 52-237 24-206 (233)
447 TIGR02788 VirB11 P-type DNA tr 99.4 1.9E-12 4E-17 117.5 8.9 145 57-248 137-281 (308)
448 TIGR02169 SMC_prok_A chromosom 99.3 5E-12 1.1E-16 132.0 9.0 79 153-234 1069-1151(1164)
449 cd01120 RecA-like_NTPases RecA 99.3 3.5E-11 7.5E-16 97.0 11.9 129 66-222 1-139 (165)
450 PRK02224 chromosome segregatio 99.3 1.1E-11 2.5E-16 126.6 9.1 80 155-235 778-869 (880)
451 PRK06995 flhF flagellar biosyn 99.2 2.7E-11 5.8E-16 115.4 8.5 170 53-238 245-430 (484)
452 PRK00064 recF recombination pr 99.2 3.1E-11 6.8E-16 111.8 8.6 77 156-237 271-359 (361)
453 PRK06067 flagellar accessory p 99.2 2.1E-10 4.6E-15 99.7 12.8 153 60-234 21-187 (234)
454 TIGR03238 dnd_assoc_3 dnd syst 99.2 1.9E-11 4.1E-16 115.3 4.9 46 52-99 20-66 (504)
455 cd01125 repA Hexameric Replica 99.1 2.3E-10 5.1E-15 99.9 10.1 129 64-220 1-159 (239)
456 cd02023 UMPK Uridine monophosp 99.1 6.6E-11 1.4E-15 100.2 5.8 114 66-192 1-114 (198)
457 cd01131 PilT Pilus retraction 99.1 4.5E-10 9.6E-15 95.6 9.8 118 66-233 3-122 (198)
458 TIGR02655 circ_KaiC circadian 99.1 5.2E-11 1.1E-15 114.3 2.1 148 60-233 17-190 (484)
459 smart00382 AAA ATPases associa 99.0 8.6E-09 1.9E-13 79.8 13.9 119 63-219 1-125 (148)
460 COG0419 SbcC ATPase involved i 99.0 7.7E-10 1.7E-14 113.7 10.0 81 153-235 810-898 (908)
461 TIGR00611 recf recF protein. A 99.0 7.9E-10 1.7E-14 102.6 7.1 62 157-223 274-344 (365)
462 PRK06002 fliI flagellum-specif 99.0 4.2E-09 9E-14 99.4 11.1 61 32-97 138-198 (450)
463 TIGR01026 fliI_yscN ATPase Fli 99.0 2.7E-09 6E-14 100.9 9.6 173 51-245 151-345 (440)
464 PRK05399 DNA mismatch repair p 98.9 1.7E-09 3.8E-14 110.1 8.3 136 52-227 596-737 (854)
465 cd01130 VirB11-like_ATPase Typ 98.9 2.4E-09 5.1E-14 90.2 6.5 47 53-99 14-60 (186)
466 TIGR02680 conserved hypothetic 98.9 3.3E-09 7.1E-14 112.7 8.2 64 152-220 1241-1316(1353)
467 COG4637 Predicted ATPase [Gene 98.9 8.9E-09 1.9E-13 92.1 8.9 73 157-232 269-345 (373)
468 PRK06315 type III secretion sy 98.9 4.4E-09 9.5E-14 99.3 7.3 109 51-160 152-293 (442)
469 PRK14079 recF recombination pr 98.9 5.6E-09 1.2E-13 96.4 7.7 77 157-241 262-347 (349)
470 cd01876 YihA_EngB The YihA (En 98.9 7.4E-09 1.6E-13 83.3 7.4 134 67-204 2-169 (170)
471 TIGR02903 spore_lon_C ATP-depe 98.9 1.5E-08 3.2E-13 100.0 10.9 118 63-203 174-291 (615)
472 PF00488 MutS_V: MutS domain V 98.8 9.6E-08 2.1E-12 83.5 14.5 50 175-224 121-170 (235)
473 PLN03210 Resistant to P. syrin 98.8 1.2E-08 2.5E-13 107.4 10.0 148 55-233 198-349 (1153)
474 TIGR03881 KaiC_arch_4 KaiC dom 98.8 2.8E-09 6E-14 92.3 4.1 26 60-85 16-41 (229)
475 PRK13898 type IV secretion sys 98.8 7.5E-08 1.6E-12 97.9 15.1 61 172-234 638-709 (800)
476 PRK13891 conjugal transfer pro 98.8 1.9E-07 4.1E-12 95.4 17.1 53 169-223 680-733 (852)
477 PRK00454 engB GTP-binding prot 98.8 4.6E-08 1E-12 81.9 9.4 65 138-206 126-194 (196)
478 PRK07196 fliI flagellum-specif 98.7 1.3E-08 2.9E-13 95.9 6.0 42 51-93 143-184 (434)
479 TIGR01420 pilT_fam pilus retra 98.7 6.1E-08 1.3E-12 89.3 9.4 113 62-223 120-233 (343)
480 TIGR00767 rho transcription te 98.6 5.6E-08 1.2E-12 90.4 6.4 54 33-90 130-194 (415)
481 cd00009 AAA The AAA+ (ATPases 98.6 1.7E-07 3.6E-12 73.4 7.4 111 63-221 18-131 (151)
482 PRK07594 type III secretion sy 98.6 6.4E-08 1.4E-12 91.2 5.7 62 33-99 129-190 (433)
483 PRK09862 putative ATP-dependen 98.6 5.8E-08 1.3E-12 93.3 5.4 59 36-99 187-245 (506)
484 PF13558 SbcCD_C: Putative exo 98.6 8.4E-08 1.8E-12 71.5 4.9 51 153-203 27-90 (90)
485 PF13555 AAA_29: P-loop contai 98.6 6.4E-08 1.4E-12 66.9 3.9 39 54-92 12-51 (62)
486 cd01136 ATPase_flagellum-secre 98.6 1.1E-07 2.3E-12 86.8 6.1 46 51-97 57-102 (326)
487 PRK09825 idnK D-gluconate kina 98.5 6.8E-08 1.5E-12 80.8 4.0 28 63-90 2-29 (176)
488 TIGR00152 dephospho-CoA kinase 98.5 2.3E-07 5E-12 78.0 6.3 130 66-235 1-133 (188)
489 PRK08149 ATP synthase SpaL; Va 98.5 1.9E-07 4.1E-12 88.0 6.1 47 51-98 139-188 (428)
490 PRK09099 type III secretion sy 98.5 2.3E-07 4.9E-12 87.8 6.1 48 51-99 151-198 (441)
491 PRK14722 flhF flagellar biosyn 98.5 1.2E-06 2.5E-11 81.4 10.5 53 52-108 125-177 (374)
492 TIGR00235 udk uridine kinase. 98.5 1.1E-07 2.4E-12 81.2 3.4 39 62-108 4-42 (207)
493 PRK13873 conjugal transfer ATP 98.5 3.1E-06 6.8E-11 86.3 14.3 61 174-236 633-704 (811)
494 TIGR00416 sms DNA repair prote 98.5 2.1E-06 4.5E-11 82.0 12.2 140 60-236 90-247 (454)
495 cd01122 GP4d_helicase GP4d_hel 98.4 3.5E-06 7.5E-11 74.6 12.7 156 52-219 18-190 (271)
496 TIGR02546 III_secr_ATP type II 98.4 2.4E-07 5.1E-12 87.5 5.2 46 51-97 133-178 (422)
497 TIGR01070 mutS1 DNA mismatch r 98.4 1.8E-06 4E-11 88.0 11.7 51 174-224 669-719 (840)
498 PRK09183 transposase/IS protei 98.4 1.7E-06 3.7E-11 76.7 10.0 37 52-89 91-127 (259)
499 PRK00300 gmk guanylate kinase; 98.4 2.2E-07 4.7E-12 78.9 3.7 28 62-89 3-30 (205)
500 TIGR03015 pepcterm_ATPase puta 98.4 7.7E-07 1.7E-11 78.5 7.3 39 52-90 30-69 (269)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-65 Score=428.51 Aligned_cols=221 Identities=34% Similarity=0.488 Sum_probs=203.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. .+|++|||+|++||+++|+||||||||||||||.||.+|++|+|.+++
T Consensus 2 mi~i~~l~K~fg~~-----~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 2 MIEIKNLSKSFGDK-----EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred eEEEEeeeEEeCCe-----EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHH
Confidence 79999999999975 599999999999999999999999999999999999999999999976
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
++|+|||+.++++.. ||.+|+.++. ...+.++++.++++.++|+++||.+..+.+|.+|||||||||||||||+.+|
T Consensus 77 ~~vGmVFQ~fnLFPHl-TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 77 RKVGMVFQQFNLFPHL-TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HhcCeecccccccccc-hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 378999999877766 9999998874 3457788899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh-hhhhhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF-IKSRQS 255 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~ 255 (263)
+++|+|||||+|||+...++++.+++++++ |+|.|+|||++.+++ .||||++|++|+++++|+|++++.+ ...+..
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~ 233 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTR 233 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHH
Confidence 999999999999999999999999999864 799999999999995 7999999999999999999999986 345566
Q ss_pred hhhhhc
Q 024738 256 SYIERI 261 (263)
Q Consensus 256 ~~~~~~ 261 (263)
.|++.+
T Consensus 234 ~FL~~i 239 (240)
T COG1126 234 QFLSKI 239 (240)
T ss_pred HHHHhh
Confidence 777654
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-60 Score=419.54 Aligned_cols=224 Identities=33% Similarity=0.482 Sum_probs=203.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||++++|+|.|..+..+...+|+||||+|++||++||+|.||||||||+|||.+|.+|++|+|.+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999986422346799999999999999999999999999999999999999999999975
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+||++||++++. ...||.+|++|++...+.++++.++++.++++.+||+++.+++|.+|||||||||+|||||+.+
T Consensus 81 ~R~~IGMIFQhFnLL-ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 81 LRQKIGMIFQHFNLL-SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHhhccEEecccccc-ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 489999998753 3349999999999888888899999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhhh-hh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKS-RQ 254 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~-~~ 254 (263)
|++||.|||||+|||.+.+.++++|+++.++ .|.||++|||.|+.++ +||||.+|++|++++.|+..+++.+..+ ..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~-lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t 238 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAIT 238 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHH
Confidence 9999999999999999999999999998654 6899999999999995 8999999999999999999999976433 33
Q ss_pred hhhh
Q 024738 255 SSYI 258 (263)
Q Consensus 255 ~~~~ 258 (263)
..|+
T Consensus 239 ~~fi 242 (339)
T COG1135 239 QEFI 242 (339)
T ss_pred HHHH
Confidence 3444
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-59 Score=404.07 Aligned_cols=210 Identities=31% Similarity=0.458 Sum_probs=196.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||||+|+++ .+++|+||+|++||+++++|||||||||+||+|.+|++|++|+|++++
T Consensus 1 MI~~~nvsk~y~~~-----~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 1 MIEFENVSKRYGNK-----KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred CceeeeeehhcCCc-----eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 68999999999864 599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC--cccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
++||+-|...+++.+ ||.+|+.+-....+|++++.++++.++++.+||+ ++.+|+|++|||||+|||.+||||+.+|
T Consensus 76 ~IGYviQqigLFPh~-Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 76 KIGYVIQQIGLFPHL-TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhhhhhcccCCCc-cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 589999998776665 9999999877777888999999999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||++|||.+|.++.+.++++.++ -|+|||+||||++++ +.+|||.+|++|+++..++|+++..+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~-l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKE-LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHH-hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999765 478999999999996 79999999999999999999998875
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-59 Score=403.52 Aligned_cols=199 Identities=37% Similarity=0.533 Sum_probs=184.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v 104 (263)
+++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.+++ .++||
T Consensus 3 ~l~i~~v~~~f~~-----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~v 77 (248)
T COG1116 3 LLEIEGVSKSFGG-----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYV 77 (248)
T ss_pred eEEEEeeEEEeCc-----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEE
Confidence 6999999999986 3699999999999999999999999999999999999999999999976 47999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
||++.++++. ||.+|+.+++...+.+.++..+++.++++.+||.++.+++|.+|||||||||+|||||+.+|++|||||
T Consensus 78 FQ~~~LlPW~-Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 78 FQEDALLPWL-TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred eccCcccchh-hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999887776 999999999877666677777889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC--CEEE
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED--GKIV 238 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~--G~i~ 238 (263)
||++||..++..+.+.+.+++++. ++||++||||++++ ..+|||++|.+ |+|.
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999998754 68999999999997 67999999999 4453
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.2e-59 Score=406.70 Aligned_cols=210 Identities=41% Similarity=0.598 Sum_probs=188.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|.+|+|++++
T Consensus 2 ~L~~~~ls~~y~~~-----~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk 76 (258)
T COG1120 2 MLEVENLSFGYGGK-----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAK 76 (258)
T ss_pred eeEEEEEEEEECCe-----eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhh
Confidence 69999999999864 699999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||.+...+.+ ||.|.+.++...+ ....++.++.+.++++.+|+.++.++++.+|||||||||.|||||+.
T Consensus 77 ~ia~vpQ~~~~~~~~-tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 77 KLAYVPQSPSAPFGL-TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred hEEEeccCCCCCCCc-EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc
Confidence 589999997544333 9999998874321 21234445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||++||..++.+++++++++.++ +|+|||+|+||++.+ .+||++++|++|++++.|+|+++++.
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999999999999754 579999999999997 68999999999999999999998875
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.7e-58 Score=393.08 Aligned_cols=203 Identities=35% Similarity=0.476 Sum_probs=181.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+++++||++.|+.+... .++|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|++++
T Consensus 1 ~i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 47899999999764322 5799999999999999999999999999999999999999999999964
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccC-CCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~ 174 (263)
++|||||+.++.+.+ |+.||+.+++...+.......+++.++++.+||.+..+ ++|.+|||||||||||||||+
T Consensus 80 ~R~~~iGfvFQ~~nLl~~l-tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDL-TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHhEEEECccCCCCCCC-CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 489999998866655 99999998765555544455677889999999997666 889999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEE
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~ 238 (263)
.+|++||+||||.+||..+.+.++++|.++.++ .|+|||+||||...+.+|||++.|++|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999764 478999999999999999999999999943
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-58 Score=398.19 Aligned_cols=210 Identities=37% Similarity=0.503 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ce
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PK 101 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~ 101 (263)
++|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ +|
T Consensus 3 ~~i~v~nl~v~y~~~-----~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNR-----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCE-----eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeE
Confidence 479999999999863 499999999999999999999999999999999999999999999854 49
Q ss_pred EEEecCCCCccccc-CHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 102 SFVFQNPDHQVVMP-TVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 102 ~~v~q~~~~~~~~~-tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
|||||.......+| ||++.+.++.... ....++.++++.++|+++|+.++.++++.+|||||+|||.|||||+.+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence 99999653222333 9999998873211 122234478899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|+|+.++..++++|+++.++ |+||++||||++.+ ++||+|+.|+ +++.+.|+++++++.
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 9999999999999999999999999999754 79999999999997 6899999996 678999999998764
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.8e-58 Score=390.29 Aligned_cols=222 Identities=30% Similarity=0.425 Sum_probs=199.4
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.+.|++++|+++|+++ .|++|+||+|++||+++|+||||||||||||+|.|+++|++|+|++.+
T Consensus 6 ~~~I~vr~v~~~fG~~-----~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~ 80 (263)
T COG1127 6 EPLIEVRGVTKSFGDR-----VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80 (263)
T ss_pred cceEEEeeeeeecCCE-----EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence 4589999999999875 699999999999999999999999999999999999999999999964
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAra 172 (263)
++|++||...++..+ ||+||+.|++.. ..++++..++.+...++.+||... .+++|++|||||++|++||||
T Consensus 81 ~~ir~r~GvlFQ~gALFssl-tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 81 YEIRKRMGVLFQQGALFSSL-TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHHHhheeEEeecccccccc-chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 489999998765444 999999998654 356777788888889999999876 899999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
++.+|++|++||||+||||.+...+-++|+++.+. -|.|+++||||++.+ .+|||++++.+|+|+++|+++++.+..+
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999998764 579999999999997 6899999999999999999999987655
Q ss_pred hhhhhhhh
Q 024738 252 SRQSSYIE 259 (263)
Q Consensus 252 ~~~~~~~~ 259 (263)
..-..|+.
T Consensus 239 P~v~qf~~ 246 (263)
T COG1127 239 PWVRQFFN 246 (263)
T ss_pred HHHHHHhc
Confidence 45555554
No 9
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-58 Score=397.64 Aligned_cols=214 Identities=48% Similarity=0.717 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++++++|++++|++. ..+|+++||+|++|++++|+|+||||||||+++++|+++|++|+|.+++
T Consensus 2 ~~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 2 RMIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred ceEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 479999999999764 3699999999999999999999999999999999999999999998754
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
++|||||+|..+++.+||.+.++|+..+.+.+.++.++++.++++.+|+.+++++++.+|||||||||+||.+|+.+|
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 489999999999988899999999999989988889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
++||||||||+||+.++++++++++++..+ .|+|+|++|||++++ .+||++++|++|+++.+|+|.++++..
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999754 468999999999997 689999999999999999999998754
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-58 Score=417.18 Aligned_cols=223 Identities=36% Similarity=0.532 Sum_probs=201.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------c
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------P 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~ 100 (263)
+.++++||+|+|++ ..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.+++ .
T Consensus 4 ~~l~i~~v~k~yg~-----~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD-----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRP 78 (352)
T ss_pred ceEEEEeeeeecCC-----eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcc
Confidence 47999999999985 3699999999999999999999999999999999999999999999975 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
+++|||+..+++.+ ||.+|+.|+++..+ ...+++++++.++++.++|+++.+++|.+|||||+|||||||||+.+|++
T Consensus 79 ig~VFQ~YALFPHl-tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 79 IGMVFQSYALFPHM-TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred cceeecCcccCCCC-cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence 89999998877766 99999999988333 44566888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhh-hhhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSR-QSSY 257 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~-~~~~ 257 (263)
||||||+|+||...+.++...++++.++ .|+|.|+||||.+++ ..+|||.+|++|+|...|+|+++......+ -..|
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~-~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~F 236 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRE-LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADF 236 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHH
Confidence 9999999999999999999999999875 489999999999996 789999999999999999999998764333 4445
Q ss_pred hhhc
Q 024738 258 IERI 261 (263)
Q Consensus 258 ~~~~ 261 (263)
++..
T Consensus 237 iG~~ 240 (352)
T COG3842 237 IGES 240 (352)
T ss_pred hCcc
Confidence 5543
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-58 Score=412.84 Aligned_cols=211 Identities=35% Similarity=0.506 Sum_probs=198.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. .+++++||+|++||+++|+||||||||||||+|+||.+|++|+|++++ .+
T Consensus 3 ~i~l~~v~K~yg~~-----~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF-----EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEEcCCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 69999999999863 289999999999999999999999999999999999999999999964 58
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
++|||+..+++.+ ||++|+.|+++..+...+++++++.++++.++|+++++++|.+|||||||||||||||+++|+++|
T Consensus 78 amVFQ~yALyPhm-tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 78 AMVFQNYALYPHM-TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred EEEeCCccccCCC-cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence 9999999888777 999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
||||+|+||...+..+...|+++.++ -|.|+|+||||..++ ..+|||.+|++|++...|+|.++....
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~-l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHh-cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999998765 478999999999997 589999999999999999999998753
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-56 Score=381.64 Aligned_cols=211 Identities=30% Similarity=0.476 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||++.|+++ +++|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++
T Consensus 2 ~~i~~~nl~k~yp~~----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 2 MMIEVKNLSKTYPGG----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred ceEEEeeeeeecCCC----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 489999999999643 3799999999999999999999999999999999999999999999964
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccC--------CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGN--------LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
++||+||.+++.... +|.+|+..+... .++..++.+..+.++|+++|+.++..++..+|||||+|||
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~-sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRL-SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHhceeEeccCCccccc-HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 489999999865544 999999876432 2455566677888999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++||.|||+++|||.+.+.+++.|+++.++ .|.|+|++.|+++.+ +||||++-|++|+++++|++.++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~-~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE-DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 9999999999999999999999999999999999999765 579999999999998 69999999999999999999886
Q ss_pred Hh
Q 024738 247 LN 248 (263)
Q Consensus 247 ~~ 248 (263)
..
T Consensus 236 ~~ 237 (258)
T COG3638 236 TD 237 (258)
T ss_pred hH
Confidence 43
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-56 Score=380.32 Aligned_cols=214 Identities=32% Similarity=0.473 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|+++.|+.+.. ..+++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.+++
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 47999999999987532 23699999999999999999999999999999999999999999999976
Q ss_pred --ceEEEecCCCCcccc-cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 --PKSFVFQNPDHQVVM-PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.+-+|||+|...+.. .||.+-+.-++...+.+.. ++++.++++.+||. .+++++|.+|||||+||+||||||+.
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 368999999654432 2898888777665555433 34588999999997 68999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++||||||||+||+..+.+++++|.++.++ .+.|+|+||||+..+. .|||+++|++|++++.++..++.+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999999999765 5789999999999996 6999999999999999999998876
No 14
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4e-55 Score=400.63 Aligned_cols=214 Identities=34% Similarity=0.463 Sum_probs=189.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|+|+++. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 mI~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 589999999996321 113699999999999999999999999999999999999999999999854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+++|+||++..+.. .|+.+|+.++....+...++.++++.++++.+||.++.++++.+|||||||||+|||||+.+
T Consensus 80 ~r~~Ig~v~Q~~~l~~~-~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEECCcccccc-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 48999999864332 39999999876544455566677889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||++||+.++..++++|+++.++ .|.|||++||+++.+ ++||++++|++|++++.|++++++..
T Consensus 159 P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~-~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 159 PKVLLCDEATSALDPATTQSILELLKEINRR-LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 9999999999999999999999999998653 368999999999998 58999999999999999999998754
No 15
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.2e-55 Score=395.04 Aligned_cols=211 Identities=29% Similarity=0.371 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+|+|++. .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 5 ~~~i~i~~l~k~~~~~-----~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK-----LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred CceEEEEeEEEEECCe-----EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 3589999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+||+||++..+.. .|+.+|+.+....++....+..+++.++++.+++.+..++++.+||+|||||++|||||+++|+
T Consensus 80 ~~ig~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 80 QRVGVVPQFDNLDPD-FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred hcEEEEeccCcCCCC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 48999999865433 3999999875444445555556778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..++++|+++.+ .|+|||++||+++++ ++||+|++|++|++++.|+++++.+.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999854 368999999999998 57999999999999999999988653
No 16
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.7e-56 Score=365.91 Aligned_cols=203 Identities=34% Similarity=0.469 Sum_probs=188.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|.|++. .++|+||||+|++||++-|+||||||||||||+|++..+|++|+|++++
T Consensus 1 mI~f~~V~k~Y~~g----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 1 MIRFENVSKAYPGG----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred CeeehhhhhhcCCC----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 68999999999875 3699999999999999999999999999999999999999999999854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+||+||||..+.... ||+||++|++...+....++++++.++|+.+||.+..+..|.+|||||||||+||||++++
T Consensus 77 LRR~IGvVFQD~rLL~~~-tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDR-TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred hhheeeeEeeeccccccc-hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 589999998654443 9999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
|++||+||||.+|||....++++++.++.. .|+||||+|||.+.++ .-.|++.+++|+++.+..
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999854 4899999999999985 678999999999987754
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-56 Score=389.49 Aligned_cols=210 Identities=36% Similarity=0.475 Sum_probs=193.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|.++|+++.|+.. .+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.+++
T Consensus 2 ~i~i~~~~~~~~~~-----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF-----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred ceeehhhhhhcccc-----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 68999999999874 699999999999999999999999999999999999999999999964
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
++|||||+..+++.+ ||.+|++|++... ..+..+.+.++.++|+.+.|+.+.+++|.+|||||||||||||||+.+
T Consensus 77 R~VGfvFQ~YALF~Hm-tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 77 RKVGFVFQHYALFPHM-TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred cceeEEEechhhcccc-hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 489999998765555 9999999997544 234567788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++||||||+++||...++++...|+++..+ -|.|+++||||.+++ +.||||++|++|+|...|++.++...
T Consensus 156 P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~-~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 156 PKVLLLDEPFGALDAKVRKELRRWLRKLHDR-LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred CCeEeecCCchhhhHHHHHHHHHHHHHHHHh-hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999999998765 368999999999997 78999999999999999999999865
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.1e-55 Score=393.24 Aligned_cols=210 Identities=38% Similarity=0.545 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEC-CCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 33 AIECSNLNYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 33 ~l~~~nl~~~y~-~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.++++||+|+|+ ++ .+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~i~~~~l~k~~~~~~-----~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGGDK-----TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCCCC-----EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 689999999998 43 699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
++||++|++..+..+ |++||+.|....++.+....++++.++++.++|.+..++++.+||+|||||++||+||+++|++
T Consensus 79 ~igy~~~~~~~~~~l-T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l 157 (293)
T COG1131 79 RIGYVPQEPSLYPEL-TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL 157 (293)
T ss_pred heEEEccCCCCCccc-cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 489999999765555 9999999977666554445567899999999999877899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+||||.++.+++++|++++++ +++||+++||.+++++ .||+|++|++|+++++|+++++...
T Consensus 158 liLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 158 LILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999764 3489999999999985 6999999999999999999887654
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-55 Score=401.36 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=190.5
Q ss_pred eEEEEeEEEEE-CCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------c
Q 024738 33 AIECSNLNYSI-TKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y-~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~ 100 (263)
+|+++||+++| +++ .+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++ .
T Consensus 3 ~l~i~~l~~~~~~~~-----~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGKT-----QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCCC-----EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 69999999999 542 599999999999999999999999999999999999999999999975 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..++.+ ||.+|+.+++...+.+..+..+++.++++.++|++++++++.+|||||||||+|||||+.+|++|
T Consensus 78 ig~v~Q~~~lfp~~-tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 78 IAMVFQNYALYPHM-SVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred EEEEeCCccccCCC-CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998754444 99999998865444555666678899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||++||+..+..+.+.|+++.++ .|.|+|+||||++++ .+||++++|++|++++.|+++++++.
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999998653 368999999999987 68999999999999999999998765
No 20
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-56 Score=370.66 Aligned_cols=210 Identities=29% Similarity=0.427 Sum_probs=192.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
||++.+++|+|+.. ..+++||||+++.||++||+|||||||||+||+|++++.|++|.|++++ +
T Consensus 1 Ml~v~~l~K~y~~~----v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~ 76 (245)
T COG4555 1 MLEVTDLTKSYGSK----VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76 (245)
T ss_pred CeeeeehhhhccCH----HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhh
Confidence 68999999999874 3599999999999999999999999999999999999999999999964 5
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+|.++.....+..+ |++||+.|+...+++...+.++++.++.+.++|.+.+++++.+||.||||||+|||||+++|+++
T Consensus 77 IGVl~~e~glY~Rl-T~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 77 IGVLFGERGLYARL-TARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred cceecCCcChhhhh-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE
Confidence 88888655444334 99999999887788888899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||||..++..+.+.++++.+ .|++||++||++++++ .||+|+++++|++++.|+++.+.+.
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999854 3689999999999996 8999999999999999999988764
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-54 Score=398.11 Aligned_cols=210 Identities=31% Similarity=0.514 Sum_probs=191.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 6 ~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGSN-----TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred EEEEEeEEEEECCe-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 79999999999753 589999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ |+.+|+.|++...+....+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus 81 g~vfQ~~~lfp~~-tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 81 CMVFQSYALFPHM-SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEeCCcccCCCC-CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998755444 999999998765555566677889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+.++.+.|+++.++ .|+|+|+||||.+++ ..||++++|++|+++..|+++++...
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 468999999999997 68999999999999999999998764
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-54 Score=398.53 Aligned_cols=210 Identities=36% Similarity=0.478 Sum_probs=191.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++ .+
T Consensus 4 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGAF-----TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred EEEEEEEEEEeCCe-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 79999999999763 589999999999999999999999999999999999999999999965 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.|++...+.+..+.++++.++++.++|++++++++.+|||||||||+|||||+.+|++||
T Consensus 79 g~v~Q~~~lfp~~-tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 79 GIVFQSYALFPNL-TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EEEeCCcccCCCC-cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998755444 999999998765455566667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+.+.|+++.++ .|.|+|+||||++++ ..||++++|++|++++.|+++++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 468999999999997 68999999999999999999999875
No 23
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5e-54 Score=396.19 Aligned_cols=211 Identities=33% Similarity=0.500 Sum_probs=191.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN--GHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~--G~I~~~~----------- 99 (263)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.+++
T Consensus 5 ~l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGAN-----TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79 (362)
T ss_pred EEEEEEEEEEECCe-----EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHC
Confidence 58999999999753 59999999999999999999999999999999999999999 9999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|+||++..++.+ ||.+|+.|++...+....+.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++
T Consensus 80 ~ig~vfQ~~~l~p~~-tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 80 GLALLFQNYALFPHL-KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CEEEEECCcccCCCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 489999998755444 9999999987555555566677899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||++||+..+.++.+.|+++.++..|.|+|+||||++++ ..||+|++|++|+++..|+++++...
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986542268999999999997 58999999999999999999999765
No 24
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-54 Score=374.37 Aligned_cols=208 Identities=34% Similarity=0.461 Sum_probs=182.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 1 IELRGLTKSFGGR-----TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred CeEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 4789999999753 599999999999999999999999999999999999999999999854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+.. .|+.+|+.++.... ....++..+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 76 ~~~i~~v~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~ 154 (235)
T cd03261 76 RRRMGMLFQSGALFDS-LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154 (235)
T ss_pred hcceEEEccCcccCCC-CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 27899998754332 39999998764322 234445566788899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|++|||||||+|||+.++..+++.|++++++ .|.|||++|||++++ .+||++++|++|++++.|+++++..
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999998653 367999999999997 5799999999999999999888764
No 25
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.6e-54 Score=392.23 Aligned_cols=211 Identities=28% Similarity=0.408 Sum_probs=187.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
..+|+++||+|+|+++ .+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~~-----~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 39 TVAIDLAGVSKSYGDK-----AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113 (340)
T ss_pred ceeEEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence 3579999999999763 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+||+||++..+..+ |+.+|+.+....++....+..+++.++++.++|.+..++++.+||||||||++||+||+++|+
T Consensus 114 ~~ig~v~q~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 114 ARIGVVPQFDNLDLEF-TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred ccEEEEeCCccCCCCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 389999998654433 999999865433344444555677889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..++++|+++.+ .|.|||++||+++++ ++||+|++|++|++++.|+++++.+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999864 368999999999998 58999999999999999999998654
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.9e-54 Score=396.73 Aligned_cols=211 Identities=34% Similarity=0.476 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------c
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------P 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~ 100 (263)
++|+++|++++|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .
T Consensus 13 ~~L~l~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDGK-----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred ceEEEEEEEEEECCe-----EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 479999999999753 589999999999999999999999999999999999999999999965 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..++.+ ||.+|+.|++...+.+..+..+++.++++.++|++++++++.+|||||||||+|||||+.+|++|
T Consensus 88 ig~vfQ~~~lfp~l-tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 88 VNTVFQSYALFPHM-TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEEEecCcccCCCC-CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998755444 99999999865445555566678889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||++||+..+..+.+.|+++.++ .|.|+|+||||.+++ ..||++++|++|+++..|++++++..
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999998764 368999999999997 68999999999999999999998765
No 27
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-54 Score=387.02 Aligned_cols=215 Identities=33% Similarity=0.495 Sum_probs=189.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++.....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 4899999999975321113599999999999999999999999999999999999999999998842
Q ss_pred ------------------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCC
Q 024738 100 ------------------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQR 154 (263)
Q Consensus 100 ------------------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 154 (263)
.+||+||++..+++..|+.+|+.++....+...++..+++.++++.+||. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 26999998754444459999998876555556666777889999999997 78999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe
Q 024738 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME 233 (263)
Q Consensus 155 ~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~ 233 (263)
++.+||||||||++|||||+.+|++|||||||++||+.++..+++.|+++++ .|.|||++|||++.+ ++|||+++|+
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999864 368999999999987 6899999999
Q ss_pred CCEEEEecChhhHHhh
Q 024738 234 DGKIVMQADGVSILNF 249 (263)
Q Consensus 234 ~G~i~~~g~~~~~~~~ 249 (263)
+|++++.|+++++++.
T Consensus 240 ~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 240 DGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEECCHHHHhcC
Confidence 9999999999988764
No 28
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-53 Score=383.45 Aligned_cols=216 Identities=34% Similarity=0.536 Sum_probs=188.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++......++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4899999999974211113699999999999999999999999999999999999999999998854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC--cccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.+||. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 37999999754444459999998865444555666667888999999997 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++.++++.|++++++ .|.|||++|||++++ .+||++++|++|++++.|+++++++.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998653 368999999999997 58999999999999999999988653
No 29
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-55 Score=365.27 Aligned_cols=217 Identities=31% Similarity=0.461 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-----eEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-----GHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-----G~I~~~~------- 99 (263)
+.++++||++.|+++ .+|+|||++|++++++||+||||||||||||++..+..... |+|.+++
T Consensus 6 ~~~~~~~l~~yYg~~-----~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYGDK-----HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEECch-----hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 469999999999975 59999999999999999999999999999999999987754 9999864
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC----CcccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqRv 167 (263)
++|+|||.|+.++ .|+++|+.++.+..+...++.++.++..|+...| .+.+++.+..|||||+||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 4899999997543 4999999999887777667778888888888877 3578899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++||||||||+|||.+..++.+++.++.+ ..|||||||+|..+ +.+|+..++..|++++.|+++++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999999999963 47999999999997 57999999999999999999999
Q ss_pred Hhhh-hhhhhhhh
Q 024738 247 LNFI-KSRQSSYI 258 (263)
Q Consensus 247 ~~~~-~~~~~~~~ 258 (263)
+++. ......|+
T Consensus 236 F~~P~~~~TedYi 248 (253)
T COG1117 236 FTNPKHKRTEDYI 248 (253)
T ss_pred hcCccHHHHHHHh
Confidence 9864 34455676
No 30
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.6e-53 Score=391.98 Aligned_cols=210 Identities=37% Similarity=0.507 Sum_probs=188.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++ .+
T Consensus 2 ~L~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT-----QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe-----EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCE
Confidence 69999999999763 599999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+|+||++..++.+ |+.+|+.++.... ..+.++..+++.++++.++|.++.++++.+|||||||||+|||||+.+|
T Consensus 77 ~~v~Q~~~l~p~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P 155 (353)
T PRK10851 77 GFVFQHYALFRHM-TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155 (353)
T ss_pred EEEecCcccCCCC-cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998654433 9999999875431 2344556678899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+..+..+.+.|+++.++ .|+|+|+||||++++ ..||++++|++|++++.|++++++..
T Consensus 156 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 156 QILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998653 468999999999997 58999999999999999999998764
No 31
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-53 Score=394.26 Aligned_cols=212 Identities=37% Similarity=0.512 Sum_probs=192.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|++++
T Consensus 17 ~~~l~l~~v~~~~~~~-----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ-----HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR 91 (377)
T ss_pred CceEEEEeEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 4579999999999753 589999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.+||+||++..++.+ |+.+|+.+++...+....+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++
T Consensus 92 ~ig~vfQ~~~lfp~l-tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 92 PINMMFQSYALFPHM-TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred CEEEEeCCCccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 489999998755444 9999999886544455666677889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||++||+..+..+.+.|+++.++ .|.|+|+||||.+++ ..||++++|++|+++..|+++++...
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILER-VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998654 368999999999997 68999999999999999999998765
No 32
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.5e-53 Score=384.98 Aligned_cols=211 Identities=28% Similarity=0.400 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
+.+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~~~i~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDK-----VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred CcEEEEEeEEEEeCCe-----EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 3579999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+.. .|+.+|+.+....++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 77 VAIGVVPQFDNLDPE-FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hcEEEEeccccCCcC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 48999999764433 3999998764333334444455667789999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|+++++ .|.|||++||+++++ ++||++++|++|+++..|+++++...
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999864 368999999999998 58999999999999999999988653
No 33
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-53 Score=381.62 Aligned_cols=215 Identities=34% Similarity=0.513 Sum_probs=187.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+.+......+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999974311112599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..+++..|+.+|+.++....+....+..+++.++++.++|. .+.++++.+||||||||++|||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 26999999743444459999998876544555566677888999999996 5789999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++ ++||+|++|++|+++++|++++++..
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999864 368999999999997 58999999999999999999988753
No 34
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-53 Score=368.36 Aligned_cols=206 Identities=33% Similarity=0.427 Sum_probs=180.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 i~~~~~~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (220)
T cd03265 1 IEVENLVKKYGDF-----EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75 (220)
T ss_pred CEEEEEEEEECCE-----EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcE
Confidence 5789999999753 599999999999999999999999999999999999999999999865 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 76 GIVFQDLSVDDE-LTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred EEecCCcccccc-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999864332 3999999876433334444456678899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|||||++||+.+++.+.+.|++++++ .|.|||++||+++++ .+||++++|++|+++..++++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999998653 367999999999997 57999999999999998887653
No 35
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-53 Score=371.13 Aligned_cols=210 Identities=38% Similarity=0.476 Sum_probs=183.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGDF-----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEEeEEEEECCE-----EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 58999999999753 599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCC----ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNL----THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+|++|++..+. ..|+.+|+.++...... ...+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|
T Consensus 77 ~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 77 GFVFQHYALFR-HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred EEEecCCcccC-CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999975432 23999999876432221 23334556788999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.+++.+.+.|.+++++ .|+|||++||+++++ +.||++++|++|++++.|+++++.+.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999998653 367999999999987 57999999999999999999888653
No 36
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-53 Score=381.49 Aligned_cols=216 Identities=36% Similarity=0.517 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974211113599999999999999999999999999999999999999999998865
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.++|. ...++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 37999998743333349999998875444445555667788999999997 6789999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..++++|++++++ .|.|||++|||++++ ++|||+++|++|+++++|+++++++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998653 368999999999997 58999999999999999999887654
No 37
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-53 Score=393.10 Aligned_cols=210 Identities=27% Similarity=0.461 Sum_probs=188.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 3 ~l~i~~l~~~~~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGDV-----VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV 77 (369)
T ss_pred EEEEEEEEEEeCCe-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999864 38
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ |+.+|+.++....+....+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus 78 ~~v~Q~~~l~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL 156 (369)
T PRK11000 78 GMVFQSYALYPHL-SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (369)
T ss_pred EEEeCCcccCCCC-CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998644333 999999987654444455566788899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..++.+++.|+++.++ .|.|+|+||||++++ ..||++++|++|+++..|+++++...
T Consensus 157 LDEPts~LD~~~~~~l~~~L~~l~~~-~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 157 LDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 368999999999987 58999999999999999999998764
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-53 Score=366.08 Aligned_cols=201 Identities=37% Similarity=0.552 Sum_probs=175.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++
T Consensus 1 l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGSV-----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred CeeeeeEEEeCCe-----eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 4789999999753 599999999999999999999999999999999999999999999864 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 76 ~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lll 154 (213)
T cd03259 76 MVFQDYALFP-HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLL 154 (213)
T ss_pred EEcCchhhcc-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976332 239999998764333333444556788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.++..+++.|++++++ .|.|||++|||++++ ++||++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999998653 367999999999997 589999999999998754
No 39
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-53 Score=379.49 Aligned_cols=216 Identities=31% Similarity=0.495 Sum_probs=187.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+++.....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999964211113599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++...++..|+.+|+.++....+....+..+++.++++.+||. +..++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 36999998743333349999998865444455556667788999999997 6788999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.++|+++.++ .|.|||++||+++++ ++||++++|++|++++.|+++++++.
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998643 468999999999997 58999999999999999999887764
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.4e-53 Score=365.43 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=173.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH---QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred CeEEEEEEEEecCCC---eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 589999999996421 2599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 78 ~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSD-RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred HHHhceEEecCcccccc-ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 37999999754332 39999998765433333444556788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++. .||++++|++|++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999998542 679999999999985 7999999999974
No 41
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-53 Score=388.56 Aligned_cols=214 Identities=31% Similarity=0.473 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|+++. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 mi~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 589999999997210 013699999999999999999999999999999999999999999999853
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|+||++..+. ..|+.+|+.++....+....+..+++.++++.+||.+..++++.+||||||||++|||||+.+
T Consensus 80 ~~~~ig~v~q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 80 ARRQIGMIFQHFNLLS-SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEeCCCccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 3899999986432 249999998875444444555567788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+++.|+++.++ .|+|||++||+++++ ++||++++|++|++++.|++++++..
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998653 368999999999997 57999999999999999999988754
No 42
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-53 Score=377.92 Aligned_cols=215 Identities=38% Similarity=0.622 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ--EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred ceEEEEeEEEEcCCCC--cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 3799999999997421 12599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3799999874233334999999886544445555666778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|++++++ .|+|||++||+++++..||++++|++|+++..|++++++..
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999998653 36899999999999878999999999999999999887654
No 43
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-53 Score=376.14 Aligned_cols=209 Identities=39% Similarity=0.572 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 3 NIIEVEDLHFRYKDG----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred ceEEEEEEEEEeCCC----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 379999999999632 2599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++....+..|+.+|+.++....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3799999874333334999999876443344445556678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||||++||+.++.++++.|++++++ |.|||++|||++++ ++||++++|++|++++.|+++++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999998643 68999999999997 68999999999999999998654
No 44
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-54 Score=367.54 Aligned_cols=220 Identities=29% Similarity=0.424 Sum_probs=195.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
+++++++|+++|++ ..+++||||++++||+++|+||||||||||+|+|+|+++|++|+|.++++
T Consensus 3 ~lL~v~~l~k~FGG-----l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 3 PLLEVRGLSKRFGG-----LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred ceeeeccceeecCC-----EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH
Confidence 47999999999987 46999999999999999999999999999999999999999999999762
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCC------------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNL------------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 165 (263)
++.-||.+..+..+ ||.||+..+.... ....++..+++.++|+++||.+.++++..+||+|||+
T Consensus 78 r~Gi~RTFQ~~rlF~~l-TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 78 RLGIARTFQITRLFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred hccceeecccccccCCC-cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 67899998765555 9999998763311 1124566788999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ .|.||++|.|||..+ .+||||+||+.|+++++|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999999999753 469999999999997 799999999999999999999
Q ss_pred hHHhhhhhhhhhhhh
Q 024738 245 SILNFIKSRQSSYIE 259 (263)
Q Consensus 245 ~~~~~~~~~~~~~~~ 259 (263)
++.++ +...++|++
T Consensus 236 eV~~d-p~VieAYLG 249 (250)
T COG0411 236 EVRNN-PRVIEAYLG 249 (250)
T ss_pred HHhcC-HHhHHHhcC
Confidence 99886 445566754
No 45
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-53 Score=377.70 Aligned_cols=215 Identities=34% Similarity=0.512 Sum_probs=185.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|++......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974210012599999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++....+..|+.+|+.++........++..+++.++++.+||+ ...++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 26899998742233349999998764333344555566788999999997 6889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||++++ ++||++++|++|++++.|+++++.+.
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999854 368999999999997 58999999999999999999887653
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-53 Score=364.52 Aligned_cols=207 Identities=36% Similarity=0.514 Sum_probs=178.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEEe
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFVF 105 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v~ 105 (263)
|+++|++++|++.. ...++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 47899999997521 012599999999999999999999999999999999999999999999865 489999
Q ss_pred cCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
|++..+. ..|+.+|+.++....+...+...+++.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 80 q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 80 QQDALLP-WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred ccccccc-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 9975332 239999998764333344444456788999999999888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe--CCEEEEecCh
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME--DGKIVMQADG 243 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~--~G~i~~~g~~ 243 (263)
|+|||+.++..+++.|+++.++ .+.|||++||+++++ ++||++++|+ +|++++.++.
T Consensus 159 t~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 159 FSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999998543 357999999999987 5899999999 7999988764
No 47
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-52 Score=383.59 Aligned_cols=218 Identities=27% Similarity=0.373 Sum_probs=187.9
Q ss_pred cceEEEEeEEEEECCCcc--------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---
Q 024738 31 GVAIECSNLNYSITKKQR--------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~--------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--- 99 (263)
.++|+++||+++|+.+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 458999999999964210 124699999999999999999999999999999999999999999999853
Q ss_pred -------------ceEEEecCCCCccc-ccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 100 -------------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 100 -------------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
.++|+||++...++ ..|+.+|+.+++... ..+.++.++++.++++.+++. ..+++++.+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 48999999742222 239999998764322 245566677888999999995 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
|+|||+|||||+.+|++||+||||++||+.++.+++++|+++.++ .|.|+|+||||++.+. +||++++|++|++++.|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999998653 3689999999999984 79999999999999999
Q ss_pred ChhhHHhh
Q 024738 242 DGVSILNF 249 (263)
Q Consensus 242 ~~~~~~~~ 249 (263)
+++++++.
T Consensus 245 ~~~~i~~~ 252 (331)
T PRK15079 245 TYDEVYHN 252 (331)
T ss_pred CHHHHHcC
Confidence 99998764
No 48
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-52 Score=365.88 Aligned_cols=210 Identities=30% Similarity=0.513 Sum_probs=184.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 1 ALEVAGLSFAYGAR-----RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred CEEEEeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 48899999999753 599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..++ ..|+.+|+.+.....+....+..+.+.++++.+|+.+.+++++.+|||||+||++|||||+.+|++|
T Consensus 76 i~~~~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 76 LGVVFQQPTLDL-DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred EEEeCCCCCCcc-cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 789999875433 3499999977543333334445567888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+.+.|++++++ +|.|||++||+++++..||++++|++|++++.++++++.+.
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999998643 36799999999999877999999999999999999888764
No 49
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-52 Score=364.78 Aligned_cols=208 Identities=30% Similarity=0.401 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++. ...++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4799999999997421 012599999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+.. .|+.+|+.++....+...++.++++.++++.+|+.+..++++.+||||||||++|||||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPD-FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHhccEEEEecCcccCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 37999999753322 399999987543223334455567889999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
.+|++|||||||+|||+.++..+.+.|++++++ +|.|||++||+++++..+|++++|++|++++.++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998643 3689999999999987678999999999998775
No 50
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-52 Score=380.22 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 47999999999974311113599999999999999999999999999999999999999999999853
Q ss_pred -----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCCh
Q 024738 100 -----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161 (263)
Q Consensus 100 -----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 161 (263)
.++|+||++..+.+..|+.+|+.++....+.+.++..+++.++++.++|. ...++++.+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 26899999753444459999998865333445555667788999999997 688999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEe
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~ 240 (263)
|||||++|||||+.+|++|||||||+|||+.++..+++.|.++.+ +|.|||+||||++++ +.||++++|++|++++.
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999854 368999999999987 68999999999999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|+++++++.
T Consensus 258 g~~~~~~~~ 266 (320)
T PRK13631 258 GTPYEIFTD 266 (320)
T ss_pred CCHHHHhcC
Confidence 999887653
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-52 Score=364.71 Aligned_cols=207 Identities=28% Similarity=0.406 Sum_probs=181.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 1 LRAENLSKRYGKR-----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred CeEEEEEEEeCCE-----EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 5789999999753 599999999999999999999999999999999999999999999853
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus 76 ~i~~~~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 76 GIGYLPQEASIFRK-LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred cEEEecCCcccccc-CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 37899998754332 39999998764333333344456778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||||+|||+.+++.+.+.|+++.+ .+.|||++||+++.+ +.||++++|++|+++..++.+++..
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999864 367999999999987 5899999999999999999888764
No 52
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-52 Score=365.10 Aligned_cols=213 Identities=32% Similarity=0.470 Sum_probs=183.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+++. ...++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 489999999997531 012599999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++....+.......+.+.++++.+++.+..++++.+|||||+||++|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 80 ARRRIGMIFQHFNLLS-SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred HHhheEEEccCcccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3799999986432 239999998764333333444456788899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|++|||||||+|||+.++..+.+.|++++++ .|+|||++||+++++ ++||++++|++|++++.++++++.+
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999998653 367999999999997 5799999999999999998887754
No 53
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.7e-52 Score=372.12 Aligned_cols=211 Identities=26% Similarity=0.384 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 6 NLVDMRGVSFTRGNR-----CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred ceEEEeCeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..+. ..|+.+|+.++.... .....+..+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 81 TVRKRMSMLFQSGALFT-DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred HHhhcEEEEecccccCC-CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 3789999875432 239999998754322 2233444556778999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.+++.+.+.|+++.++ .|.|||++|||++++ +.||++++|++|++++.|+++++.+.
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998653 368999999999997 57999999999999999999888764
No 54
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1e-52 Score=360.64 Aligned_cols=201 Identities=33% Similarity=0.508 Sum_probs=176.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV-----TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75 (213)
T ss_pred CEEEeeEEEECCe-----eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE
Confidence 4789999999763 599999999999999999999999999999999999999999999864 379
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++....+...++..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 76 ~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llll 154 (213)
T cd03301 76 MVFQNYALYP-HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154 (213)
T ss_pred EEecChhhcc-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875332 349999998764333344455566788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.++..+.+.|++++++ .+.|||++||+++++ .+||++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999998653 367999999999997 579999999999998765
No 55
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-52 Score=365.85 Aligned_cols=207 Identities=31% Similarity=0.456 Sum_probs=180.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 1 LEVRGLTKRFGGL-----VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred CeeeeeEEEECCE-----EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 4789999999753 599999999999999999999999999999999999999999998854
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCC----------ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL----------THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|+||++..+.. .|+.+|+.++...... ...+..+++.++++.+|+++..++++.+||||||||++|
T Consensus 76 ~i~~v~q~~~l~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 76 GIGRTFQIPRLFPE-LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred CEEEEecccccccC-CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 27899999864332 3999999876432211 123445678889999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||++|||++++ .+||++++|++|+++..|+++++.+
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999999864 368999999999998 5799999999999999999888754
No 56
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-52 Score=372.67 Aligned_cols=210 Identities=31% Similarity=0.560 Sum_probs=184.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ml~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (271)
T PRK13638 1 MLATSDLWFRYQDE-----PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75 (271)
T ss_pred CeEEEEEEEEcCCc-----ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHH
Confidence 58999999999753 599999999999999999999999999999999999999999998854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++....+..++.+|+.++....+....+..+++.++++.+++.++.++++.+||||||||++|||||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred HhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCC
Confidence 378999987533344478899877543333444455567788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++++ ++||++++|++|++++.|++++++..
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998642 67999999999998 58999999999999999999887653
No 57
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-52 Score=373.55 Aligned_cols=214 Identities=41% Similarity=0.606 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 4 EIIRVEHISFRYPDAA---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred ceEEEEEEEEEeCCCC---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 4799999999996421 3599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3799999974223334999999876544344455556778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|+++.++ .|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999998653 36899999999999877999999999999999998887653
No 58
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-52 Score=389.64 Aligned_cols=210 Identities=34% Similarity=0.491 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++
T Consensus 2 ~~L~~~nls~~y~~~-----~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 2 PMIDVSDLSVEFGDT-----TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred ceEEEeeEEEEECCE-----EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 379999999999763 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC--CC--ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NL--THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..++. .|+.+|+.++...+ .+ ...+.++++.++++.+++.++.++++.+||||||||++|||||+
T Consensus 77 ~~ig~v~q~~~l~~~-~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 77 RRVASVPQDTSLSFE-FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred cceEEEccCCCCCCC-CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 38999999865443 39999998763211 11 12344567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++++ ++||++++|++|++++.|+++++++.
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 99999999999999999999999999999874 367999999999998 68999999999999999999987654
No 59
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-53 Score=347.90 Aligned_cols=207 Identities=33% Similarity=0.551 Sum_probs=186.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||.+++|+++|+.. =-.++++|+.||+++|+|||||||||||++|+|+..|.+|+|++++ .+
T Consensus 1 ~l~L~~V~~~y~~~-------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 1 MLALDDVRFSYGHL-------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred CccccceEEeeCcc-------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 47789999999752 3578999999999999999999999999999999999999999975 47
Q ss_pred EEEecCCCCcccccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+++||+.+++... ||.+|+.++... .+++ .+.+++++.++.++||..+.++.|.+|||||||||+|||+|+++-+||
T Consensus 74 SmlFQEnNLFaHL-tV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 74 SMLFQENNLFAHL-TVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred hhhhhccccchhh-hhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 9999998865555 999999998643 2333 455678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+||||||+|||.-+.+++.++.+++.+ ++.|++||||+++++ .++|+++++++|+|.+.|+..+++..
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E-~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999876 478999999999998 58999999999999999999998864
No 60
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-52 Score=373.45 Aligned_cols=213 Identities=34% Similarity=0.570 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 4 YILKVEELNYNYSDG----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred ceEEEEeEEEEeCCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 379999999999632 2599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|+||++....+..|+.+|+.++....+.+..+..+++.++++.+||.++.++++.+||||||||++|||||+.+
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 27999999753333459999998764433445555566788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++. +||++++|++|++++.|+++++.+.
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999998653 3689999999999985 8999999999999999999887653
No 61
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=9.3e-53 Score=362.08 Aligned_cols=201 Identities=38% Similarity=0.489 Sum_probs=172.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|++.. ...++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57899999997521 002599999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+.. .|+.+|+.++....+....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 80 RRRHIGFVFQSFNLLPD-LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HhhcEEEEeeccccCCC-CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 37999998754322 39999998864433333334456788899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
|++|||||||+|||+.++..+.+.|++++++ .++|||++||+++++..||++++|++|++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998652 36899999999999889999999999974
No 62
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.3e-52 Score=376.93 Aligned_cols=207 Identities=29% Similarity=0.415 Sum_probs=185.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+++++|++|+|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ .
T Consensus 2 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ 76 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ-----NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76 (301)
T ss_pred EEEEEEEEEEECCE-----EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhc
Confidence 58999999999753 599999999999999999999999999999999999999999999864 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..+..+ |+.+|+.+....++...++..+++.++++.+||.+..++++..||||||||++|||||+++|++|
T Consensus 77 ig~~~q~~~l~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 77 IGYLPEHNPLYLDM-YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred eEEecCCCCCCCCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998644333 89999987654444444555667889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||||+|||+.+++.+++.|+++. + ++|||++||+++++ ++||++++|++|++++.|+++++..
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~-~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIG-K--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999984 2 47999999999998 5799999999999999999998865
No 63
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-52 Score=372.21 Aligned_cols=211 Identities=40% Similarity=0.611 Sum_probs=185.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 ml~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 1 MIRLENVSYSYPDG----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred CEEEEEEEEEcCCC----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 58999999999632 2599999999999999999999999999999999999999999998864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++...++..|+.+|+.++....+....+..+++.++++.+||.+..++++.+||+||+||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3799999975333334999999876433334455556778889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|+++.+ .|.|||++||+++++..||++++|++|++++.|+++++...
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999864 36899999999999877999999999999999999887653
No 64
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-52 Score=372.58 Aligned_cols=217 Identities=40% Similarity=0.613 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEECCCcc-ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 32 VAIECSNLNYSITKKQR-KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~-~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
++|+++|++++|++... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 48999999999974210 113699999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|+||++..+++..++.+|+.++....+....+..+++.++++.+||.++.++++.+||||||||++|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 37899999754344448999998865443444555567788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++..||++++|++|+++..|+++++...
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998653 36899999999999866999999999999999999887653
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-52 Score=360.41 Aligned_cols=205 Identities=33% Similarity=0.448 Sum_probs=177.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+|+++|++++|+++. ...++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++ .
T Consensus 1 ~l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 488999999997531 011599999999999999999999999999999999999999999999864 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..+. ..|+.+|+.+.....+....+..+++.++++.+|+.+.+++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 80 LGFVSDSTGLYD-RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred EEEecCCcccCc-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 899999985332 2399999987543333444455677889999999999899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||||++||+.+++.+.+.|+++.+ .|.|||++||+++++ .+||++++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999854 367999999999987 589999999999998653
No 66
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.2e-52 Score=360.19 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=179.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE
Confidence 5789999999752 12599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+.+.....+....+..+++.++++.+++.+..++++.+||+||+||++|||||+.+|++||
T Consensus 78 ~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 78 GYCPQFDALFD-ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEecCcCCccc-cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875332 34999999876433333344445678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|||||++||+.+++.+.+.|+++++ +.|||++||+++.+ ++||++++|++|++++.|+++++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999853 37999999999998 57999999999999999987654
No 67
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-52 Score=370.66 Aligned_cols=212 Identities=39% Similarity=0.577 Sum_probs=186.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+++++||+++|+++ ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 3 LIETRDLCYSYSGS----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78 (277)
T ss_pred eEEEEEEEEEeCCC----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 69999999999642 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l 158 (277)
T PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158 (277)
T ss_pred heEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 37999999743333349999998754333445555566788999999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ +.||++++|++|++++.|+++++++.
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999998653 368999999999998 68999999999999999999988653
No 68
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-52 Score=387.44 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEECCCcc-------------------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 024738 32 VAIECSNLNYSITKKQR-------------------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~-------------------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 92 (263)
.+|+++||+|.|+.+.. +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 36888888888876421 11237999999999999999999999999999999999999999
Q ss_pred eEEEEcC-----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCC
Q 024738 93 GHVYVKR-----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155 (263)
Q Consensus 93 G~I~~~~-----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 155 (263)
|+|++++ .++|+||++..++. .|+.+|+.++....++...+..+++.++++.+||.++.+++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~-~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH-MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 9999853 48999999864433 39999998875444444555567788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC
Q 024738 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED 234 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~ 234 (263)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++.++ .++|||++|||++++ ++||++++|++
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999998643 368999999999997 58999999999
Q ss_pred CEEEEecChhhHHhh
Q 024738 235 GKIVMQADGVSILNF 249 (263)
Q Consensus 235 G~i~~~g~~~~~~~~ 249 (263)
|+++..|+++++...
T Consensus 241 G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 241 GEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEecCCHHHHHhC
Confidence 999999999988754
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.6e-52 Score=362.01 Aligned_cols=209 Identities=29% Similarity=0.415 Sum_probs=183.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 1 ~l~~~~l~~~~~~~-----~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 1 MIEFKNVSKHFGPT-----QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred CEEEEeEEEEECCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 48999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++.. ..+....+..+++.++++.+|+++.+++++.+||+|||||++|||||+.+
T Consensus 76 ~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 76 RQEAGMVFQQFYLFP-HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred hhceEEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 3799999875433 2399999977531 12333444556788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+.+.|++++++ +.|||++||+++++ ..||++++|++|++++.|++.++.+.
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999998642 68999999999998 57999999999999999999888653
No 70
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-52 Score=362.99 Aligned_cols=209 Identities=32% Similarity=0.470 Sum_probs=179.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 1 IEVENLSKTYPNG----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred CEEeeEEEecCCc----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 4789999999751 2599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++..+. ..|+.+|+.++.... +.......+++.++++.+++.+..++++.+||||||||++|
T Consensus 77 ~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 77 RRQIGMIFQQFNLIE-RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HhccEEEcccCcccc-cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 2789999875432 239999997653210 11123334667889999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++|||++++. +||++++|++|++++.|+++++.+
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence 99999999999999999999999999999999998643 3679999999999985 899999999999999999888643
No 71
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-52 Score=371.57 Aligned_cols=215 Identities=38% Similarity=0.603 Sum_probs=188.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEEcC--------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN---GHVYVKR-------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~~-------- 99 (263)
+.+|+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.+++
T Consensus 3 ~~~l~i~~l~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSK---KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred CceEEEEEEEEEcCCCC---ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 45899999999996421 259999999999999999999999999999999999999998 8999854
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
+++|+||++...++..|+.+|+.+.....+...++..+++.++++.++|.+..++++.+|||||+||++|||||+
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 479999997433333499999987654444555566677889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++..||++++|++|++++.|++++++..
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998653 36899999999999878999999999999999999887653
No 72
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-52 Score=370.54 Aligned_cols=208 Identities=31% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------------- 99 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------------- 99 (263)
.++|++++|++. .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 26 ~~~~~~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 100 (269)
T cd03294 26 SKEEILKKTGQT-----VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100 (269)
T ss_pred hhhhhhhhcCCc-----eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhh
Confidence 677999999764 589999999999999999999999999999999999999999998843
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|
T Consensus 101 ~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 101 RKKISMVFQSFALLP-HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred cCcEEEEecCcccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3799999875432 2399999987643333334444567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++ ++||++++|++|++++.|+++++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999998653 368999999999997 58999999999999999999988754
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.6e-52 Score=363.98 Aligned_cols=209 Identities=27% Similarity=0.422 Sum_probs=180.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|+.+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~----~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 1 MLEVENLSKVYPNG----KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred CeEEEeeeeecCCC----cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 48899999999721 2599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|+||++..+. ..|+.+|+.++.... +....+..+++.++++.+++....++++.+||||||||++
T Consensus 77 ~~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIE-RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHhheEEEcCCCcccc-cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 2799999875432 239999997653211 1112334567888999999998889999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|+|||++||+++++ ++||++++|++|++++.|+++++.
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999999999999999999999999998653 367999999999997 589999999999999999988763
No 74
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-52 Score=370.04 Aligned_cols=215 Identities=34% Similarity=0.500 Sum_probs=183.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++......++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999975210012599999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.+++. ...++++.+||||||||++|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 27899998632223349999998764333344445556778899999997 5679999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||++||+.+++.+.+.|++++++ +.|||++||+++++ .+||++++|++|++++.|+++++++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998642 67999999999998 58999999999999999999887653
No 75
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.8e-52 Score=376.53 Aligned_cols=195 Identities=29% Similarity=0.427 Sum_probs=174.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ceEEEecCCCCcccccCHHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PKSFVFQNPDHQVVMPTVEA 119 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~~~v~q~~~~~~~~~tv~~ 119 (263)
++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ .++|+||++..+... |+.+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~-tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL-TGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC-cHHH
Confidence 599999999999999999999999999999999999999999999865 389999997644333 9999
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 024738 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~ 199 (263)
|+.+....++....+..+++.++++.++|.+..++++.+||||||||++|||||+++|++|||||||+|||+.++..+++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 99876544444445556678899999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 200 AVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.|++++++ |.|||++||+++++ ++||++++|++|+++..|+++++.+.
T Consensus 166 ~l~~~~~~--g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 166 YIRALKEE--GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99998643 68999999999998 47999999999999999999887653
No 76
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-52 Score=356.20 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=175.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEEE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSFV 104 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~v 104 (263)
|+++|++++|+++ ++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGRV-----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECCE-----EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 5789999999753 599999999999999999999999999999999999999999999975 48999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|++..+.. .|+.+|+.+.....+....+..+.+.++++.+++++..++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 76 PEERGLYPK-MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred ccCCcCCcC-CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999854332 3999998875433333344555678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||+|||+.+++.+.+.|+++.++ +.|||++||+.+++ ++||++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARA--GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999998643 57999999999997 579999999999998653
No 77
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-52 Score=356.91 Aligned_cols=194 Identities=32% Similarity=0.488 Sum_probs=169.0
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceEEE
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKSFV 104 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~~v 104 (263)
+++|++++|++. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|+
T Consensus 1 ~~~~l~~~~~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 468999999751 2599999999999999999999999999999999999999999999865 48999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|++...++..|+.+|+.++..... . ..+++.++++.+++.++.++++.+||||||||++|||||+.+|++|||||
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELD--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcC--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9987433333499999987543221 1 12467789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV 238 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~ 238 (263)
||+|||+.+++.+.+.|++++++ |.|||++||+++++. +||++++|++|+++
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 153 PTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999998643 679999999999984 79999999999874
No 78
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-52 Score=368.39 Aligned_cols=210 Identities=41% Similarity=0.657 Sum_probs=184.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|++. .++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (275)
T PRK13639 1 ILETRDLKYSYPDG----TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76 (275)
T ss_pred CEEEEEEEEEeCCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHH
Confidence 48999999999642 2599999999999999999999999999999999999999999998864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.++|.++.++++.+|||||+||++|||||+.+|
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 278999997423333499999987643333444455567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++++ ++||++++|++|++++.|+++++++
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999998642 68999999999997 5899999999999999999998765
No 79
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-52 Score=365.24 Aligned_cols=204 Identities=32% Similarity=0.449 Sum_probs=178.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v 104 (263)
||+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|+
T Consensus 1 ml~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v 75 (255)
T PRK11248 1 MLQISHLYADYGGK-----PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75 (255)
T ss_pred CEEEEEEEEEeCCe-----eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEE
Confidence 58999999999753 599999999999999999999999999999999999999999999965 37999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|++..+. ..|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 154 (255)
T PRK11248 76 FQNEGLLP-WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154 (255)
T ss_pred eCCCccCC-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99975432 23999999875433333444455678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe--CCEEEEecCh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME--DGKIVMQADG 243 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~--~G~i~~~g~~ 243 (263)
||+|||+.++..+.+.|++++++ .|.|||++|||++++ ..||++++|+ +|++++.++.
T Consensus 155 Pt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 155 PFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998543 368999999999997 5799999998 5999988654
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1e-51 Score=362.66 Aligned_cols=209 Identities=32% Similarity=0.426 Sum_probs=182.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (250)
T PRK11264 3 AIEVKNLVKKFHGQ-----TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77 (250)
T ss_pred cEEEeceEEEECCe-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchh
Confidence 69999999999753 599999999999999999999999999999999999999999998743
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+. ..|+.+|+.++.. .......+..+++.++++.+|+....++++.+||||||||++||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 78 GLIRQLRQHVGFVFQNFNLFP-HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hHHHHhhhhEEEEecCcccCC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 3799999875332 2399999976432 12233344456778899999999888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++ ++||++++|++|++++.|+++++.+.
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998642 67999999999998 57999999999999999999888653
No 81
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-51 Score=357.95 Aligned_cols=206 Identities=27% Similarity=0.331 Sum_probs=176.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|++.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 4799999999997521 002489999999999999999999999999999999999999999998853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+. ..|+.+|+.++.........+..+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIP-TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHhheEEEEEcccccCC-CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 3799999875333 2389999887542223333445667889999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEe
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++|||+++++.||++++|++|++++.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999998653 36799999999998877999999999998753
No 82
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.2e-52 Score=382.99 Aligned_cols=196 Identities=30% Similarity=0.453 Sum_probs=178.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------------ceEEEecCCCCcccc
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------------PKSFVFQNPDHQVVM 114 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------------~~~~v~q~~~~~~~~ 114 (263)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ .++|+||++..++..
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 599999999999999999999999999999999999999999999854 489999998654433
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
|+.+|+.++....++..++..+++.++++.+||+.+.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 87 -TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 87 -TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9999999876555566666677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
..+.+.|.++.++ .++|||+||||++++ +.||+|++|++|+++..|++++++..
T Consensus 166 ~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 166 DSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999998653 368999999999997 68999999999999999999998764
No 83
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-53 Score=354.99 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=193.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|.++|+.|+|+++ +++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.+++
T Consensus 4 ~L~a~~l~K~y~kr-----~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 4 TLVAENLAKSYKKR-----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred EEEehhhhHhhCCe-----eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 69999999999875 599999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChH--HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD--EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.+||+||++..+-.+ ||.+|+...+.....+.+ +.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+
T Consensus 79 lGigYLpQE~SIFr~L-tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 79 LGIGYLPQEASIFRKL-TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cCcccccccchHhhcC-cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 379999998754434 999999877655433323 4455688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-hhcCCEEEEEeCCEEEEecChhhHHhhhhhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
|+++||||||+|+||.+..++.++++.+.. +|..|+|+-|+..+ +.+|||.++|.+|++.++|+++++.++ +....
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n-~~Vr~ 234 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN-EDVRR 234 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC-hhhhh
Confidence 999999999999999999999999999864 47899999999988 689999999999999999999999886 34445
Q ss_pred hhhh
Q 024738 256 SYIE 259 (263)
Q Consensus 256 ~~~~ 259 (263)
.|++
T Consensus 235 ~YLG 238 (243)
T COG1137 235 VYLG 238 (243)
T ss_pred hccc
Confidence 5653
No 84
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-52 Score=361.85 Aligned_cols=210 Identities=30% Similarity=0.436 Sum_probs=182.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 l~~~~l~~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 1 IEFENVTKRYGGG----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred CEEEEEEEEeCCc----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 4789999999751 2599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc--ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN--YLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
++|++|++..+. ..|+.+|+.++....+....+..+++.++++.+++.. +.++++.+||||||||++|||||+.+|+
T Consensus 77 i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 77 IGYVIQQIGLFP-HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred eEEEccCccccC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 799999875432 2499999987543333334445567889999999985 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++ ++||++++|++|++++.++++++.+.
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998653 367999999999987 58999999999999999998887653
No 85
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-51 Score=375.05 Aligned_cols=217 Identities=30% Similarity=0.393 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEECCCcc-----ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQR-----KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~-----~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------- 99 (263)
++|+++||++.|+.+.. +...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999964211 124699999999999999999999999999999999999999999999854
Q ss_pred ---------ceEEEecCCCCccc-ccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
+++|+||++...+. ..++.+++....... .....+..+++.++++.+||. ..+++++.+|||||+|||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 48999999842222 228888886554322 344555667889999999997 478999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++||+||||++||+..+.+++++|+++.++ .|.|+|+||||++.+. +||+|++|++|++++.|+++++
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998653 4689999999999985 7999999999999999999998
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
++.
T Consensus 243 ~~~ 245 (327)
T PRK11308 243 FNN 245 (327)
T ss_pred hcC
Confidence 875
No 86
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6e-52 Score=356.09 Aligned_cols=197 Identities=33% Similarity=0.448 Sum_probs=171.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+++ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~----~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 1 MIEFHNVSKAYPGG----VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred CEEEEeeeEEeCCC----ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 48999999999522 2599999999999999999999999999999999999999999998854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 77 ~~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLP-DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred HHhheEEEecChhhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 3789999985332 249999998764333333444456788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
|++|||||||+|||+.++..+.+.|+++.++ +.|||++||+++++. +||++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999998542 679999999999985 799999999985
No 87
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7e-52 Score=358.87 Aligned_cols=202 Identities=34% Similarity=0.508 Sum_probs=175.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEEcC---------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-----KPTNGHVYVKR--------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~p~~G~I~~~~--------- 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 1 IELRDLNVYYGDK-----HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred CEEEEEEEEcCCc-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 5789999999753 5999999999999999999999999999999999999 99999998854
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhhccCCCCCh-HHHHHHHHHHHHHcCCCcccCCC--CCCCChHHHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH-DEVRSKVAKALDAVGMSNYLQRP--VQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+ ..|+.+|+.++....+... .+..+++.++++.+|+.+..+++ +.+||||||||++||
T Consensus 76 ~~~~~~~i~~~~q~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 76 VLELRRRVGMVFQKPNPF--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHHHHhhEEEEecCchhc--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 378999997643 3499999987643332222 23456788899999998876766 599999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|||+.+|++|||||||+|||+.++..+++.|+++++ + .|||++|||++++ ++||++++|++|++++.|++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999864 2 6999999999997 5899999999999999988765
No 88
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-51 Score=367.43 Aligned_cols=215 Identities=36% Similarity=0.576 Sum_probs=186.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~~~l~~~nl~~~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred ceEEEEEeEEEEcCCCC---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 35899999999996321 3699999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++...++..|+.+|+.++........++..+.+.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 379999997422223499999987643333444455567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+++.|+++.++ ++.|||++||+++++..||++++|++|+++..|+++++...
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998653 34799999999999878999999999999999998877653
No 89
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.5e-52 Score=356.79 Aligned_cols=203 Identities=30% Similarity=0.410 Sum_probs=173.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ...++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ~l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 1 LLKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred CEEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 378999999996421 113599999999999999999999999999999999999999999999853
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|++|++..+. ..|+.+|+.+..........+..+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 80 ~~~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLP-DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHhcEEEEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 3899999875332 23999999875432223333445667889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEE
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~ 238 (263)
+|++|||||||+|||+.++..+.+.|++++++ .+.|||++|||++++..||++++|++|+++
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998643 357999999999998778999999999975
No 90
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-51 Score=359.64 Aligned_cols=208 Identities=33% Similarity=0.452 Sum_probs=181.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T PRK11124 2 SIQLNGINCFYGAH-----QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred EEEEEeeEEEECCe-----eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhh
Confidence 68999999999753 599999999999999999999999999999999999999999999853
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhh-ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++..+.. .|+.+|+.+. ....+....+..+++.++++.+|+....++++.+||||||||++||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 77 IRELRRNVGMVFQQYNLWPH-LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHhheEEEecCccccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 37899998764322 3999998643 222233344445678889999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|+|++||+++++ ++||++++|++|++++.|+++++.+
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999854 368999999999998 5799999999999999999887643
No 91
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-51 Score=369.39 Aligned_cols=215 Identities=31% Similarity=0.465 Sum_probs=183.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|+++.....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 6999999999975310012499999999999999999999999999999999999999999998753
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.++|. ++.++++.+||||||||++|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 37899998743333349999998764333333444456678899999995 688999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+.+|++|||||||+|||+.++..+++.|+++.++ .|+|||++||+++++ ++||++++|++|++++.|+++++.+
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998653 368999999999987 5899999999999999999888754
No 92
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.6e-51 Score=355.61 Aligned_cols=200 Identities=29% Similarity=0.411 Sum_probs=174.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 76 (222)
T PRK10908 1 MIRFEHVSKAYLGG----RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPF 76 (222)
T ss_pred CEEEEeeEEEecCC----CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHH
Confidence 48999999999421 2599999999999999999999999999999999999999999998854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..++ ..|+.+|+.++....+...++..+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 77 ~~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 77 LRRQIGMIFQDHHLLM-DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred HHhheEEEecCccccc-cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 3789999975333 349999998764333344445556778899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVM 239 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~ 239 (263)
|++|||||||++||+.+++.+.+.|+++.++ +.|+|++||+++++. .||++++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999998543 579999999999985 799999999999864
No 93
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.2e-52 Score=356.91 Aligned_cols=204 Identities=32% Similarity=0.441 Sum_probs=176.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (222)
T cd03224 1 LEVENLNAGYGKS-----QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75 (222)
T ss_pred CEEeeEEeecCCe-----eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhc
Confidence 5789999999753 599999999999999999999999999999999999999999999854
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++..+.. .|+.+|+.++..... ..+..+++.++++.+ ++.+..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~-~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 76 GIGYVPEGRRIFPE-LTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred CeEEeccccccCCC-CcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 37999999854332 399999987643322 223345566788888 58888899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||||+|||+.++..+++.|+++++ .+.|||++||+++++ .+||++++|++|+++..++++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999864 367999999999997 579999999999999999887764
No 94
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-51 Score=364.64 Aligned_cols=215 Identities=35% Similarity=0.535 Sum_probs=186.4
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 5 ~~~l~i~~l~~~~~~~~---~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA---SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred CceEEEEEEEEEcCCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 34799999999997531 2589999999999999999999999999999999999999999999965
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++...+...++.+|+.++........++..+++.++++.+++.+..++++.+||+|||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 379999997423333488999887644333444455567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++..||++++|++|++++.|+++++.+.
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998643 36899999999999866999999999999999999887653
No 95
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-52 Score=366.83 Aligned_cols=215 Identities=33% Similarity=0.456 Sum_probs=197.6
Q ss_pred eEEEEeEEEEECCCcc-------------------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 33 AIECSNLNYSITKKQR-------------------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~-------------------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
.|+++|++|-|+++.. +...-++|+||+++.|||++|+|-||||||||+|++.+|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 6999999999986521 112367999999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC
Q 024738 94 HVYVKR-----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156 (263)
Q Consensus 94 ~I~~~~-----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 156 (263)
+|.+++ ++++|||+..+.++. ||.+|+.|++...+.+.++.++++.++++.+||+.+.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr-tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR-TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch-hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 999964 479999998866655 99999999999889999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
.+|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.++.++ -++|||+||||++++ ++.|||.+|++|
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~-l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK-LKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH-hCCeEEEEecCHHHHHhccceEEEecCC
Confidence 999999999999999999999999999999999999999999999998765 358999999999996 899999999999
Q ss_pred EEEEecChhhHHhh
Q 024738 236 KIVMQADGVSILNF 249 (263)
Q Consensus 236 ~i~~~g~~~~~~~~ 249 (263)
+|+..|+|+++..+
T Consensus 242 ~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 242 EIVQVGTPEEILLN 255 (386)
T ss_pred eEEEeCCHHHHHcC
Confidence 99999999999875
No 96
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-51 Score=362.28 Aligned_cols=209 Identities=33% Similarity=0.484 Sum_probs=182.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (258)
T PRK13548 2 MLEARNLSVRLGGR-----TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76 (258)
T ss_pred eEEEEeEEEEeCCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhh
Confidence 68999999999753 599999999999999999999999999999999999999999999865
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh-----
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA----- 174 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----- 174 (263)
.++|++|++..++. .|+.+|+.++........++..+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 77 ~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 77 RRAVLPQHSSLSFP-FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred heEEEccCCcCCCC-CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 37899999764333 399999987543222222334456788999999998899999999999999999999999
Q ss_pred -hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 175 -EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 175 -~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.+|++|||||||+|||+.++..+.+.|+++.++ .|.|||++|||++++ .+||++++|++|++++.|+++++.+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 599999999999999999999999999998633 367999999999998 5899999999999999999888765
No 97
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.4e-51 Score=379.82 Aligned_cols=197 Identities=31% Similarity=0.453 Sum_probs=177.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------------ceEEEecCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------------------PKSFVFQNPD 109 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------------------~~~~v~q~~~ 109 (263)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ .++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999964 3899999986
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.++. .|+.+|+.++....+....+..+++.++++.+||+++.++++.+||||||||++|||||+.+|++|||||||++|
T Consensus 117 l~p~-~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 117 LMPW-LTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred CCCC-CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 5433 399999998764444555566678889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+..+.++.+.|.++.++ .++|||++|||++++ ++||++++|++|++++.|+++++...
T Consensus 196 D~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAK-LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999998653 368999999999997 68999999999999999999998754
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.6e-52 Score=354.39 Aligned_cols=197 Identities=47% Similarity=0.696 Sum_probs=169.8
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ce
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PK 101 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~ 101 (263)
+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 ~~~~l~~~~~~~~---~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 1 ELKNLSFSYPDGA---RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred CceeEEEecCCCC---eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 4689999997521 2599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++....+..|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874322334999999875433333334445678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
|||||+|||+.++..+.+.|++++++ |.|||++|||++++. +||++++|++|+
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998653 689999999999985 699999999885
No 99
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-51 Score=366.04 Aligned_cols=214 Identities=36% Similarity=0.547 Sum_probs=186.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKES--DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCC--cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 799999999997421 13589999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++....+..|+.+|+.++....+....+..+++.++++.++|.++.++++.+|||||+||++|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 37999999742233349999998764333344445556788999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||++||+.++..+.+.|++++++ .|.|||++||+++++..||++++|++|++++.|++++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999998653 36899999999999877999999999999999999887653
No 100
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.5e-51 Score=353.46 Aligned_cols=197 Identities=31% Similarity=0.435 Sum_probs=171.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 76 (214)
T cd03292 1 IEFINVTKTYPNG----TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76 (214)
T ss_pred CEEEEEEEEeCCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4789999999642 2599999999999999999999999999999999999999999998864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++....+...++..+++.++++.+++++..++++.+||||||||++|||||+.+|
T Consensus 77 ~~~i~~v~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 77 RRKIGVVFQDFRLLP-DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHheEEEecCchhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 3799999975432 2399999987643333334455567889999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
+++||||||++||+.+++.+.+.|+++.++ |.|||++||+++++. +||++++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999998542 679999999999985 7999999999974
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.3e-51 Score=360.58 Aligned_cols=210 Identities=29% Similarity=0.365 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (257)
T PRK10619 4 NKLNVIDLHKRYGEH-----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78 (257)
T ss_pred ccEEEeeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccc
Confidence 479999999999753 599999999999999999999999999999999999999999998754
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCccc-CCCCCCCChHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYL-QRPVQTLSGGQ 163 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq 163 (263)
.++|++|++..+.. .|+.+|+.++. ........+..+++.++++.+|+.+.. ++++.+|||||
T Consensus 79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~-~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 79 LKVADKNQLRLLRTRLTMVFQHFNLWSH-MTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred cccccchHHHHHhhceEEEecCcccCCC-CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 37999999764332 39999987643 222333445566788999999998764 88999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|+|||++|||++++. +||++++|++|++++.|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999864 3689999999999985 799999999999999999
Q ss_pred hhhHHhh
Q 024738 243 GVSILNF 249 (263)
Q Consensus 243 ~~~~~~~ 249 (263)
++++...
T Consensus 236 ~~~~~~~ 242 (257)
T PRK10619 236 PEQLFGN 242 (257)
T ss_pred HHHhhhC
Confidence 9887653
No 102
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-51 Score=354.35 Aligned_cols=199 Identities=37% Similarity=0.498 Sum_probs=170.7
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEEec
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFVFQ 106 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v~q 106 (263)
+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|
T Consensus 1 ~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 1 EVEDLTVSYGGH-----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred CcccceeEECCE-----EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 468999999753 599999999999999999999999999999999999999999999976 3899999
Q ss_pred CCCCccc-ccCHHHHHHhhccCCC----CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 107 NPDHQVV-MPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 107 ~~~~~~~-~~tv~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
++..... ..|+.+|+.++..... ....+..+++.++++.+++++..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9764322 2499999987543211 1123345678889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|||||+|||+.++..+.+.|+++++ .|.|||++|||++++ ++||++++|++| +++.|
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999864 367999999999998 579999999886 55543
No 103
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-51 Score=352.75 Aligned_cols=196 Identities=29% Similarity=0.440 Sum_probs=172.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGKK-----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75 (208)
T ss_pred CEEEEEEEEECCe-----EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE
Confidence 4789999999653 599999999999999999999999999999999999999999999965 378
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++...... ..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 76 ~~~q~~~~~~-~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 76 ALIEAPGFYP-NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred EecCCCccCc-cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875332 34999999876432222 134577889999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.+++.+.+.|+++++ .+.|||++|||++++ ++||++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999864 367999999999998 579999999999998754
No 104
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-51 Score=358.53 Aligned_cols=209 Identities=23% Similarity=0.363 Sum_probs=182.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (241)
T PRK10895 3 TLTAKNLAKAYKGR-----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77 (241)
T ss_pred eEEEeCcEEEeCCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 79999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+.. .|+.+|+.+..... ....++.+..+.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 78 ~~i~~~~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 78 RGIGYLPQEASIFRR-LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred hCeEEeccCCccccc-CcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 37999998754322 39999998753222 2233444567888999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.+.++.+ .|.|||++||+++++ +.||++++|++|++++.|+++++.+.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999998854 367999999999887 58999999999999999999888653
No 105
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-51 Score=357.56 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=181.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 2 ILYLEGLSVSFDGF-----KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred eEEEEeeEEEcCCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 68999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+.. .|+.+|+.++.... ....++.++++.++++.+|+.+..++++.+|||||+||++||
T Consensus 77 ~~i~~~~q~~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 77 AGIGRKFQKPTVFEN-LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred cCeeEeccccccCCC-CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 27899998754332 39999998753211 011233456788899999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++++ ++||++++|++|++++.|+++++..
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999999853 47999999999998 4799999999999999999988765
No 106
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.2e-51 Score=358.57 Aligned_cols=207 Identities=32% Similarity=0.449 Sum_probs=181.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~-------- 99 (263)
+|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+|+|+|+++|+ +|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 1 AIEIENLNLFYGEK-----EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred CEEEEEEEEEECCe-----eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 48999999999753 5999999999999999999999999999999999999998 99998853
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+. .|+.+|+.++....+ ....+..+++.++++.+|+. +..++++.+||||||||+
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred chHHHHhheEEEecCcccCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 3799999976433 599999987643322 23344556788899999998 778899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++++ ..||++++|++|+++..|+++++
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK---KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999854 26999999999987 57999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
++.
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 754
No 107
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-51 Score=362.00 Aligned_cols=200 Identities=32% Similarity=0.472 Sum_probs=176.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSF 103 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~ 103 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|
T Consensus 11 ~~l~i~~l~~~~~~~-----~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~ 85 (257)
T PRK11247 11 TPLLLNAVSKRYGER-----TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRL 85 (257)
T ss_pred CcEEEEEEEEEECCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEE
Confidence 469999999999753 599999999999999999999999999999999999999999999864 4899
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
++|++..+.. .|+.+|+.++.. . ...+++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus 86 v~q~~~l~~~-~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 86 MFQDARLLPW-KKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EecCccCCCC-CcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999764332 399999987531 1 12356778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|||+|||+.++..+.+.|+++.++ .+.|||++|||++++ ++||++++|++|+++++++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999998653 367999999999997 589999999999999987653
No 108
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-51 Score=352.90 Aligned_cols=198 Identities=27% Similarity=0.419 Sum_probs=173.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++ ++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 i~~~~~~~~~~~~-----~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 74 (211)
T cd03264 1 LQLENLTKRYGKK-----RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74 (211)
T ss_pred CEEEEEEEEECCE-----EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhhe
Confidence 5789999999753 5999999999999 9999999999999999999999999999999865 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+.+.....+....+..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 75 ~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 75 GYLPQEFGVYP-NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred EEecCCCcccc-cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999986432 23999999875432233334445678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|||||+|||+.+++.+.+.|+++++ +.|||++|||++++ ++||++++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE---DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999853 37999999999998 579999999999998754
No 109
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-52 Score=357.03 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=196.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSF 103 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~ 103 (263)
+|++++|+|+|+++ .+++|+||++++|++.|++|||||||||.+|+|.|++.|++|+|.|++ +|||
T Consensus 2 ~L~ie~vtK~Fg~k-----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFGDK-----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76 (300)
T ss_pred ceEEecchhccCce-----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhccc
Confidence 69999999999975 599999999999999999999999999999999999999999999987 6999
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
+|.+..++.-+ ||.+.+.|.+...+++.++.+.++..||+++++..+..+++.+||.|++|++.+..|++|+|+++|||
T Consensus 77 LPEERGLy~k~-tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 77 LPEERGLYPKM-TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ChhhhccCccC-cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 99998877665 99999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||||||.+.+.+.+.+.++.+ .|.|||++||.|+.++ .||+++.|++|+.|.+|+.+++..
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999864 4799999999999995 799999999999999999998876
No 110
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-51 Score=372.77 Aligned_cols=215 Identities=25% Similarity=0.308 Sum_probs=183.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK----PTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----p~~G~I~~~~--------- 99 (263)
+|+++||++.|+.+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 699999999997532 11359999999999999999999999999999999999997 4899999864
Q ss_pred --------ceEEEecCCCCccc-ccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqR 166 (263)
.++|+||++...+. ..++.+++...+... +...++.++++.++++.+||.+ .+++++.+|||||+||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 38999999842222 227777765543322 3344566678899999999963 5789999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|+|||||+.+|++||+||||++||+.++.+++++|+++.++ .|.|+|+||||++.+ ++||+|++|++|++++.|++++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998653 468999999999998 5899999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 241 ~~~~ 244 (326)
T PRK11022 241 IFRA 244 (326)
T ss_pred HhhC
Confidence 8865
No 111
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-51 Score=359.89 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 4 PLLSVSGLMMRFGGL-----LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred ceEEEeeEEEEECCE-----EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHH
Confidence 379999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC----------CC---C--ChHHHHHHHHHHHHHcCCCcccCCCCCCCChH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN----------LN---L--THDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~----------~~---~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 162 (263)
.++|+||++..+.. .|+.+|+.++... .. . ...+..+.+.++++.+|+.+..++++.+||||
T Consensus 79 ~~~i~~~~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 79 RMGVVRTFQHVRLFRE-MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred hcCeEEeccCcccCCC-CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 26789998764332 3999999875321 00 0 11123356778899999998899999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++ .|.|||++||+++++ ++||++++|++|++++.|
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999998653 368999999999998 579999999999999999
Q ss_pred ChhhHHhh
Q 024738 242 DGVSILNF 249 (263)
Q Consensus 242 ~~~~~~~~ 249 (263)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99887653
No 112
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=365.05 Aligned_cols=222 Identities=30% Similarity=0.397 Sum_probs=190.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-C----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-P----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p----~~G~I~~~~-------- 99 (263)
.|+++||+.+|.... +...+++||||++++||++||+|+|||||||+.+.|+|+++ | .+|+|.|++
T Consensus 1 lL~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 1 LLEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred CceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 378999999997532 23579999999999999999999999999999999999997 4 578998864
Q ss_pred ---------ceEEEecCCCCcccc-cCHHHHHHhhccCC-CC-ChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHH
Q 024738 100 ---------PKSFVFQNPDHQVVM-PTVEADVAFGLGNL-NL-THDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk 164 (263)
.|+++||+|...+.. .++.+.+.-.+... +. ..++..+++.++|+.+||.+ .++.+|.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 489999998544322 17777776555432 23 45677889999999999974 67999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||.||.||+.+|++||+||||++||+..+.+++++|+++.+ +.|+++|+||||+..+ ++||||.||..|+|++.|++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~ 238 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPV 238 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCH
Confidence 999999999999999999999999999999999999999987 4589999999999997 68999999999999999999
Q ss_pred hhHHhhhhhhhhh
Q 024738 244 VSILNFIKSRQSS 256 (263)
Q Consensus 244 ~~~~~~~~~~~~~ 256 (263)
++++++..+-++.
T Consensus 239 ~~i~~~P~HPYT~ 251 (316)
T COG0444 239 EEIFKNPKHPYTR 251 (316)
T ss_pred HHHhcCCCChHHH
Confidence 9999875554443
No 113
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.8e-51 Score=361.98 Aligned_cols=216 Identities=32% Similarity=0.469 Sum_probs=183.4
Q ss_pred eEEEEeEEEEECCCc----cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQ----RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~----~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------- 99 (263)
+|+++||+++|++.. .....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 699999999996310 0013699999999999999999999999999999999999999999999854
Q ss_pred -------ceEEEecCCCC-cccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHH
Q 024738 100 -------PKSFVFQNPDH-QVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 -------~~~~v~q~~~~-~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++.. .....|+.+|+.+..... .....+..+++.++++.+++. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 38999998732 222349999987654321 233334456788899999996 67899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+. +||++++|++|++++.|++++++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999998653 3689999999999985 899999999999999999999876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 241 ~ 241 (265)
T TIGR02769 241 F 241 (265)
T ss_pred C
Confidence 3
No 114
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-51 Score=353.67 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=182.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||+++||+++|++. ..|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 ~l~~~~l~~~~~~~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 1 MLKLTDITWLYHHL-------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred CeEEEEEEEEECCc-------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 48999999999742 2399999999999999999999999999999999999999999865 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..+.. .|+.+|+.++........+...+++.++++.+|+++..++++.+||||||||++||||++.+|++||
T Consensus 74 ~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 152 (232)
T PRK10771 74 SMLFQENNLFSH-LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152 (232)
T ss_pred EEEecccccccC-CcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998753332 3999999875321101122345668889999999989999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhhhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQSSY 257 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 257 (263)
|||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ ++||++++|++|++++.|+++++.... .....|
T Consensus 153 LDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~-~~~~~~ 227 (232)
T PRK10771 153 LDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK-ASASAL 227 (232)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh-hHHHHh
Confidence 99999999999999999999998653 367999999999997 579999999999999999998887653 344444
No 115
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-51 Score=361.44 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~l~i~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 10 TTFALRNVSFRVPGR-----TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred ceEEEeeEEEEECCE-----EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 479999999999753 599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+. ..|+.+|+.++.... +.......+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 85 ~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 85 RKVAYLPQQLPAAE-GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hheEEeccCCCCCC-CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3799999875433 238999998753211 1112233456788999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.+|++|||||||+|||+.++..+.+.|.+++++ .|.|||++||+++++ +.||++++|++|++++.|+++++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999999998653 367999999999998 5899999999999999999888764
No 116
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-51 Score=355.81 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=179.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 5 MLSFDKVSAHYGKI-----QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred EEEEEeEEEeeCCc-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHH
Confidence 79999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++.... ...+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|
T Consensus 80 ~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 80 EAVAIVPEGRRVFS-RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred hCEEEeccCcccCC-CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 3789999875432 239999998753211 2233344566778888 5777778899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++ ++||++++|++|++++.|+++++...
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998643 68999999999987 68999999999999999999988653
No 117
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-51 Score=371.48 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=181.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK----PTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----p~~G~I~~~~--------- 99 (263)
+|+++||+++|+.+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|++++
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 799999999995321 12369999999999999999999999999999999999996 5899999854
Q ss_pred --------ceEEEecCCCCccc-ccCHHHHHHhhccCC---C---CChHHHHHHHHHHHHHcCCCc---ccCCCCCCCCh
Q 024738 100 --------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL---N---LTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSG 161 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSg 161 (263)
.++|+||++...+. ..++.+++....... + ....+..+++.++++.+||.+ .+++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 38999999853222 238888886532211 1 111344567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEe
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~ 240 (263)
||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++ .|.|||+||||++++ ++||++++|++|+|++.
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998653 368999999999998 57999999999999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|+++++++.
T Consensus 241 g~~~~i~~~ 249 (330)
T PRK15093 241 APSKELVTT 249 (330)
T ss_pred CCHHHHHhC
Confidence 999998764
No 118
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1e-50 Score=370.36 Aligned_cols=217 Identities=25% Similarity=0.320 Sum_probs=184.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC--------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR-------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~-------- 99 (263)
.++|+++||+++|+... +...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++
T Consensus 10 ~~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 35899999999996421 1246999999999999999999999999999999999999996 99999854
Q ss_pred ---------ceEEEecCCCCccc-ccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkq 165 (263)
.++|+||++...++ ..++.+++...+... +....+..+++.++++.++|.+ .+++++.+|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 48999999842222 227888876544322 2445555677889999999974 357899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++||+||||++||+.++..++++|+++.++ .|.|+|+||||++.+. +||++++|++|++++.|+++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 4689999999999984 79999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++++.
T Consensus 248 ~i~~~ 252 (330)
T PRK09473 248 DVFYQ 252 (330)
T ss_pred HHHhC
Confidence 98864
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-51 Score=358.95 Aligned_cols=208 Identities=33% Similarity=0.496 Sum_probs=181.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 2 TLRTENLTVGYGTK-----RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEEEEeEEEEECCE-----EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh
Confidence 69999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..+.. .|+.+|+.++... .+.......+++.++++.+++.+..++++.+|||||+||++||||++.
T Consensus 77 ~i~~~~q~~~~~~~-~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 77 RLALLPQHHLTPEG-ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred heEEecccCCCCCC-ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 37999998753322 3899999875211 111123345567889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++ +.||++++|++|+++..|+++++.+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999998542 67999999999997 5899999999999999999888765
No 120
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-51 Score=357.23 Aligned_cols=209 Identities=28% Similarity=0.410 Sum_probs=180.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.+++
T Consensus 4 ~~~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 4 PPKMEARGLSFFYGDF-----QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred CcEEEEeeeEEEECCe-----eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999974 6899998854
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. .|+.+|+.++....+. ..++..+++.++++.+++.+ .+++++.+|||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 3799999975432 4999999876433222 23344567788999999853 468889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++|||++++ +.||++++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 2 47999999999998 589999999999999999998
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++++.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88754
No 121
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=357.96 Aligned_cols=209 Identities=28% Similarity=0.436 Sum_probs=181.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++
T Consensus 10 ~~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 10 QPQIKVENLNLWYGEK-----QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred ceeEEEeeeEEEeCCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 3589999999999753 599999999999999999999999999999999999975 899998843
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++....+...++..+++.++++.+++. +.+++++.+|||||+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 3799999876432 49999998764333334444456678899999983 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+++.|+++. + +.|||++|||++++ ++||++++|++|++++.|++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 47999999999997 5899999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8754
No 122
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-51 Score=360.14 Aligned_cols=212 Identities=34% Similarity=0.478 Sum_probs=183.3
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
++.+|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~~~l~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 4 SVARLRGEQLTLGYGKY-----TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cccEEEEEEEEEEECCE-----EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH
Confidence 34589999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhcc-CCC---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLG-NLN---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|+||++..+. ..++.+|+.++.. ... ...+...+++.++++.+++.+..++++.+||||||||++||||
T Consensus 79 ~~~~i~~v~q~~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 79 VARRIGLLAQNATTPG-DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred HhhheEEeeccCcCCC-CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHH
Confidence 3799999975433 2399999876521 111 1122334567889999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.++..+.+.|.++.++ .|.|||++||+++++ ++||++++|++|++++.|+++++..
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999998643 368999999999987 6899999999999999999888764
No 123
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1e-50 Score=357.06 Aligned_cols=209 Identities=33% Similarity=0.443 Sum_probs=182.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 75 (252)
T TIGR03005 1 VRFSDVTKRFGIL-----TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75 (252)
T ss_pred CEEEEEEEEeCCe-----eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccc
Confidence 4789999999753 599999999999999999999999999999999999999999998753
Q ss_pred ------------ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 100 ------------PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ------------~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. ..|+.+|+.++.. ..+....+..+.+.++++.+|+.+..++++.+|||||+||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 76 PADEKHLRQMRNKIGMVFQSFNLFP-HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred ccchhHHHHHhhCeEEEecCcccCC-CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 3789999875332 2399999987421 1223344455678889999999988999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|.|+|++||+++++ .+||++++|++|++++.|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998653 368999999999998 5899999999999999999988
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 234 ~~~~ 237 (252)
T TIGR03005 234 IFRQ 237 (252)
T ss_pred HhcC
Confidence 8754
No 124
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.6e-50 Score=357.10 Aligned_cols=213 Identities=25% Similarity=0.345 Sum_probs=181.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 4 QPLLSVRGLTKLYGPR-----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred CceEEEeeeEEEcCCc-----eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 3479999999999753 599999999999999999999999999999999999999999998754
Q ss_pred -----------ceEEEecCCCCcccc-cCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHH
Q 024738 100 -----------PKSFVFQNPDHQVVM-PTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 165 (263)
.++|++|++...... .++.+|+.+...... ....+..+++.++++.+++. ..+++++.+|||||+|
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 278999997422222 278888765432111 12234456778899999997 4788999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++. +||++++|++|++++.|+++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998653 3689999999999985 79999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 238 ~~~~~ 242 (258)
T PRK11701 238 QVLDD 242 (258)
T ss_pred HHhcC
Confidence 88754
No 125
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-51 Score=348.05 Aligned_cols=199 Identities=32% Similarity=0.512 Sum_probs=171.0
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ . .|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 i~~~~l~~~~~~~-----~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ-----P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE-----e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE
Confidence 4789999999752 2 399999999999999999999999999999999999999999965 379
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++........++.++++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 74 ~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llll 152 (211)
T cd03298 74 MLFQENNLFA-HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152 (211)
T ss_pred EEecccccCC-CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986432 239999998754311111223455678899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.++..+.+.|++++++ .+.|||++||+++++ ++||++++|++|++++.|
T Consensus 153 DEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 153 DEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999998643 368999999999998 579999999999998653
No 126
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.1e-51 Score=349.38 Aligned_cols=196 Identities=33% Similarity=0.461 Sum_probs=171.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (213)
T cd03262 1 IEIKNLHKSFGDF-----HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75 (213)
T ss_pred CEEEEEEEEECCe-----EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHH
Confidence 4789999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++.. ..+....+..+++.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 76 ~~i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 76 QKVGMVFQQFNLFP-HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred hcceEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 2789999985332 2399999987532 223334445567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
++|||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++ ++||++++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999864 267999999999998 57999999999974
No 127
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-50 Score=359.79 Aligned_cols=217 Identities=27% Similarity=0.420 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEECCCcc----ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------
Q 024738 32 VAIECSNLNYSITKKQR----KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~----~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------- 99 (263)
++|+++||+++|+++.. +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 47999999999963210 113699999999999999999999999999999999999999999999864
Q ss_pred -----ceEEEecCCCCccc-ccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVV-MPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~-~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++...+. ..++.+++.+.... ......+..+.+.++++.+++. ...++++.+||||||||++|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 37999998742222 22788888765332 1233444456788899999995 6778899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|++|||||||++||+.+++.+.+.|.++.++ .|.|||++||+++++. +||++++|++|++++.|+++++.+.
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 999999999999999999999999999999998653 3679999999999985 7999999999999999999888764
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-50 Score=350.68 Aligned_cols=207 Identities=38% Similarity=0.468 Sum_probs=171.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ~l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 478999999997531 012599999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEecCCCCccc-ccCHHHHHHhhccCCCCC-hHHHHHH-HHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVV-MPTVEADVAFGLGNLNLT-HDEVRSK-VAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++...+. ..|+.+|+.++....... ..+..+. +.++++.+++. ...++++.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 37999999732222 239999998754322211 1222222 35789999995 67899999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
|+.+|++|||||||+|||+.+++.+.+.|++++++ .|.|||++||+++++. +||++++|++|+++..|
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999998653 2579999999999985 89999999999998654
No 129
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-50 Score=353.17 Aligned_cols=205 Identities=34% Similarity=0.529 Sum_probs=179.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 3 EIEFKEVSYSSFGK-----EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred eEEEEeEEEEeCCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh
Confidence 69999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+ ..|+.+|+.++..... ....++.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 78 ~i~~~~q~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 78 KIGMVFQQPHLF--EGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred cEEEEecCchhc--hhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 379999997543 2499999876532211 1134577889999997 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.+++.+.+.|+++.++ .|.|||++|||++++ +.||++++|++|++++.+++.+++..
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998643 367999999999997 57999999999999999999988753
No 130
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-50 Score=353.77 Aligned_cols=208 Identities=31% Similarity=0.438 Sum_probs=180.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFGQV-----EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEECCe-----eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 69999999999753 599999999999999999999999999999999999974 799999864
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++..+ ...|+.+|+.++...... ...+..+.+.++++.+++.+ .+++++.+||||||||++
T Consensus 78 ~~~~~~i~~v~q~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 78 IELRRRVQMVFQIPNPI-PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHhccEEEEeccCccC-CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 379999997533 234999999876432221 23444567888999999853 578999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|+|++||+++++ +.||++++|++|++++.|+++++.
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999984 2 57999999999997 589999999999999999999887
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 54
No 131
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-50 Score=353.93 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|++++
T Consensus 6 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 6 AIIETENLNLFYTDF-----KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred ceEEEeeeEEEeCCc-----eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 379999999999753 599999999999999999999999999999999999987 489998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCC----CcccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+. ...+..+++.++++.+++ .+..++++.+||||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~-~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPF-L-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred ccHHHHhhceEEEeeccccc-c-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 379999997643 2 4999999876432222 233445677888999987 356788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+++.|+++. + +.|||++||+++++ +.||++++|++|+++..|++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E--SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 47999999999997 5799999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 8754
No 132
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-50 Score=353.54 Aligned_cols=209 Identities=31% Similarity=0.422 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 3 FAIETVNLRVYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred ceEEEEeEEEEeCCe-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 479999999999753 599999999999999999999999999999999999987 499998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+++.++++.+++. ..+++++.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFP-HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred cChHHHhhceeEEecCCccCC-CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 3789999975432 23999999875432221 2334456678889999984 3578899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ .+||++++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999853 37999999999997 579999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 88754
No 133
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.3e-50 Score=346.52 Aligned_cols=200 Identities=33% Similarity=0.514 Sum_probs=172.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
++++||+++|+. +++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 ~~~~~l~~~~~~-------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE
Confidence 478999999963 46899999999999999999999999999999999999999999864 379
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++.........+.++++.++++.+++.+..++++.+||+||+||++|||||+.+|+++||
T Consensus 74 ~v~q~~~~~~-~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 152 (213)
T TIGR01277 74 MLFQENNLFA-HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLL 152 (213)
T ss_pred EEeccCccCC-CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986432 239999997653221111223345677899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
||||++||+.++..+.+.|+++.++ .+.|||++||+++++ +.||++++|++|++++.|+
T Consensus 153 DEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 153 DEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998643 368999999999997 5799999999999998874
No 134
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-50 Score=382.50 Aligned_cols=227 Identities=34% Similarity=0.433 Sum_probs=196.4
Q ss_pred CcceEEEEeEEEEECCCc------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----
Q 024738 30 SGVAIECSNLNYSITKKQ------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---- 99 (263)
..+.++++||+++|..+. .+...+++||||++.+||++||||+||||||||.|+|+|+.+|++|+|.+++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 467899999999998421 2346799999999999999999999999999999999999999999999965
Q ss_pred -----------ceEEEecCCCCcccc-cCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHH
Q 024738 100 -----------PKSFVFQNPDHQVVM-PTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkq 165 (263)
++-++||+|...... .||.+.+..++.... ....+.++++.++++.++|.. +++++|.+|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 367899998644332 299999887765432 224555678999999999985 799999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|++|||||+||+..+.+++++|+++.++ -|.|+|+||||+..++ .||||++|++|+|++.|+.+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e-~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE-LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999765 5799999999999996 69999999999999999999
Q ss_pred hHHhhhhhhhhhh
Q 024738 245 SILNFIKSRQSSY 257 (263)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (263)
+++++..+.++..
T Consensus 516 ~v~~~p~h~Ytr~ 528 (539)
T COG1123 516 KVFENPQHPYTRK 528 (539)
T ss_pred HHhcCCCChHHHH
Confidence 9998755554443
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.8e-50 Score=355.45 Aligned_cols=208 Identities=27% Similarity=0.438 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC---------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR--------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~--------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 3 TIIRVEKLAKTFNQH-----QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred cEEEEeeEEEEeCCe-----EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 479999999999753 5999999999999999999999999999999999999986 49998765
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 162 (263)
.++|+||++..+. ..|+.+|+.++.... ....++.++++.++++.+|+.+..++++.+||+|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVN-RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred chhHHHHHhheEEEcccccccc-CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 2689999976433 239999998653210 1112334567889999999998889999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++|||++++ .+||++++|++|++++.|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998653 368999999999987 689999999999999999
Q ss_pred ChhhH
Q 024738 242 DGVSI 246 (263)
Q Consensus 242 ~~~~~ 246 (263)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 99886
No 136
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=343.82 Aligned_cols=218 Identities=29% Similarity=0.410 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+..|+.. ++|++|||++++||+++|+|+||||||||||+|+|+.+|.+|+|.|.+
T Consensus 2 ~mL~v~~l~~~YG~~-----~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 2 PMLEVENLSAGYGKI-----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred CceeEEeEeecccce-----eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHH
Confidence 489999999999874 699999999999999999999999999999999999999999999975
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++||||....+..+ ||.||+.++...... ........+++.+.| .|.+..+++..+|||||||.++|||||+.+
T Consensus 77 r~Gi~~VPegR~iF~~L-TVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 77 RLGIAYVPEGRRIFPRL-TVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred hCCeEeCcccccchhhC-cHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 389999988755544 999999987533221 111122266677777 477889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
|++|+|||||.||-|.-.+++.+.|+++.++ .|+||++|.++...+ +++||.++|.+|+++.+|+.+++.++. ....
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~-~v~~ 232 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP-DVRE 232 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH-HHHH
Confidence 9999999999999999999999999999754 468999999999996 799999999999999999999998763 3444
Q ss_pred hhh
Q 024738 256 SYI 258 (263)
Q Consensus 256 ~~~ 258 (263)
.|+
T Consensus 233 ~yL 235 (237)
T COG0410 233 AYL 235 (237)
T ss_pred Hhh
Confidence 454
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-50 Score=350.67 Aligned_cols=204 Identities=34% Similarity=0.430 Sum_probs=175.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 1 LEVSNLNVYYGQS-----HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred CEEEeEEEEeCCe-----EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 5789999999753 599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-CCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-MSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+. ..|+.+|+.++....+.. ..+...++++.++ +....++++.+|||||+||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 76 GIAYVPQGREIFP-RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred CeEEeccCCcccC-CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3799999986433 239999998764332221 1233466777776 5777899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||||+|||+.++..+.+.|.+++++ .+.|||++||+++++. +||++++|++|++++.|+++++.
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999998653 3689999999999985 79999999999999999988873
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.1e-50 Score=354.88 Aligned_cols=207 Identities=35% Similarity=0.472 Sum_probs=180.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 2 l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 2 LRLSRVSWSAGGR-----LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred ceEEeEEEEECCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 6899999999753 599999999999999999999999999999999999999999999865 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
++|++|++..++ ..|+.+|+.++... ......+..+++.++++.+++.+..++++.+|||||+||++|||||+.+
T Consensus 77 i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 77 VALVEQDSDTAV-PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred eEEecccCccCC-CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 789999875333 34999999875211 1111223345678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+++||||||+|||+.++..+.+.|+++.+ +|.|||++||+++++ +.||++++|++|++++.|+++++..
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999864 367999999999998 6899999999999999999888755
No 139
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.7e-50 Score=351.04 Aligned_cols=207 Identities=28% Similarity=0.356 Sum_probs=175.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR------------ 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~------------ 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVEDK-----EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75 (243)
T ss_pred CeEeeEEEEECCE-----EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhh
Confidence 5789999999753 5999999999999999999999999999999999995 79999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCC-------CChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-------LTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQKQRVA 168 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~ 168 (263)
.++|++|++..+.. .|+.+|+.+...... ....+..+++.++++.+++. ...++++. +||||||||++
T Consensus 76 ~~~i~~v~q~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 76 RAGLFLAFQYPEEIPG-VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred ccceEeeeccccccCC-cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 16899999864332 389999876432111 12233446678899999997 56788887 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChhhH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|||++|||++++. . ||++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999999999999999999999999999999999864 3679999999999985 6 899999999999999988765
Q ss_pred Hh
Q 024738 247 LN 248 (263)
Q Consensus 247 ~~ 248 (263)
..
T Consensus 233 ~~ 234 (243)
T TIGR01978 233 KE 234 (243)
T ss_pred cc
Confidence 43
No 140
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-50 Score=369.89 Aligned_cols=201 Identities=26% Similarity=0.445 Sum_probs=178.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||++ ||+|+|++. .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~-~l~k~~~~~------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~ 72 (352)
T PRK11144 1 MLEL-NFKQQLGDL------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLP 72 (352)
T ss_pred CeEE-EEEEEeCCE------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 5788 999999752 23 89999999999999999999999999999999999999998743
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..++. .|+.+|+.++... ...+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 73 ~~~~~i~~v~q~~~l~~~-~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 73 PEKRRIGYVFQDARLFPH-YKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred hhhCCEEEEcCCcccCCC-CcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 37899999864433 3999999876421 224567889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||++||+..+..+++.|+++.++ .|.|+|+||||++++ .+||++++|++|+++..|++++++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998653 368999999999987 57999999999999999999998765
No 141
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.8e-50 Score=347.26 Aligned_cols=200 Identities=30% Similarity=0.413 Sum_probs=175.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEEE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSFV 104 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~v 104 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|+
T Consensus 1 l~l~~v~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGKQ-----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75 (223)
T ss_pred CEEEeEEEEECCE-----EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEE
Confidence 5789999999753 599999999999999999999999999999999999999999999865 47899
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
||++..+.. .|+.+|+.++....+.. .+++.++++.+++++..++++.+||+||+||++||||++.+|++|||||
T Consensus 76 ~q~~~~~~~-~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 76 IESPPLYEN-LTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred cCCCCcccc-CCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 998754332 39999997654322222 2456788999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
||+|||+.+++.+++.|+++++ .|.|||++|||++++ +.||++++|++|+++..|++.+
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999854 267999999999998 5899999999999999998764
No 142
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.3e-50 Score=351.03 Aligned_cols=211 Identities=28% Similarity=0.368 Sum_probs=179.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|++. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 3 LLQVSGLSKSYGGG-----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred eEEEeeeEEEeCCc-----eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH
Confidence 79999999999753 589999999999999999999999999999999999999999998853
Q ss_pred ---------ceEEEecCCCCcccc-cCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVM-PTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++...+.. .++.+|+.+...... ....+..+.+.++++.+++. ...++++.+|||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 269999987432222 277788754321111 11123346778899999997 578999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||+|||+++++. .||++++|++|++++.++++++
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999997643 3689999999999985 7999999999999999999888
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 237 ~~~ 239 (253)
T TIGR02323 237 LDD 239 (253)
T ss_pred hcC
Confidence 653
No 143
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-50 Score=352.84 Aligned_cols=207 Identities=29% Similarity=0.448 Sum_probs=180.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~-------- 99 (263)
+|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 13 ~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 13 KIQVRNLNFYYGKF-----HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred eEEEEEEEEEeCCe-----EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 79999999999753 59999999999999999999999999999999999986 5899998853
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+. .|+.+|+.++.... ..+..+..+++.++++.+++. ...++++.+|||||+||+
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred chHHHhcceEEEecCCccCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 3789999975432 49999998764322 234445556788899999974 457889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.+++.+.+.|+++. + +.|||++||+++.+ .+||++++|++|++++.|+++++
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q--DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 2 47999999999998 58999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
.+.
T Consensus 243 ~~~ 245 (260)
T PRK10744 243 FTK 245 (260)
T ss_pred HhC
Confidence 753
No 144
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-50 Score=347.60 Aligned_cols=209 Identities=38% Similarity=0.495 Sum_probs=183.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++ .++
T Consensus 1 l~~~~l~~~~~~~-----~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF-----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe-----eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE
Confidence 4689999999753 599999999999999999999999999999999999999999999864 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.+.....+.......+++.++++.+|+.+.+++.+.+||+||+||++|||||+.+|+++||
T Consensus 76 ~~~q~~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (232)
T cd03300 76 TVFQNYALFP-HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLL 154 (232)
T ss_pred EEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976432 239999998764433333444556778899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ +.||++++|++|++++.++..++...
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999998653 368999999999997 57999999999999999998887653
No 145
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-49 Score=347.45 Aligned_cols=208 Identities=34% Similarity=0.491 Sum_probs=182.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|++ ++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++ .++
T Consensus 1 l~~~~l~~~~~~------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEE
Confidence 468999999974 379999999999999999999999999999999999999999999865 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.+.....+....+..+.+.++++.+++.+..++++.+|||||+||++||||++.+|++++|
T Consensus 75 ~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 153 (235)
T cd03299 75 YVPQNYALFP-HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLL 153 (235)
T ss_pred EEeecCccCC-CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999875332 249999998764333333445556778899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+.+++.+++.|++++.+ .+.|+|++||+++++ +.||++++|++|++++.++++++.+.
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~-~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKE-FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999998653 368999999999997 57999999999999999998887654
No 146
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=352.92 Aligned_cols=210 Identities=27% Similarity=0.427 Sum_probs=180.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-----
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR----- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~----- 99 (263)
++.+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|++++
T Consensus 16 ~~~~l~~~nl~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK-----QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CCceEEEEeEEEEECCE-----EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 34589999999999753 599999999999999999999999999999999999975 899999854
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQ 163 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq 163 (263)
.++|++|++..+ . .|+.+|+.++....+. ...+..+++.++++.+++.+ .+++++.+|||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPF-P-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred cccchHHHhhceEEEecCCCCC-C-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 279999997643 2 3999999876432222 23344566788999999963 5678899999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++.+ ..||++++|++|++++.|+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999853 46999999999998 5799999999999999999
Q ss_pred hhhHHhh
Q 024738 243 GVSILNF 249 (263)
Q Consensus 243 ~~~~~~~ 249 (263)
+++++..
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9888753
No 147
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.2e-49 Score=347.53 Aligned_cols=209 Identities=36% Similarity=0.490 Sum_probs=182.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++ .++
T Consensus 1 i~i~~l~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF-----QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe-----eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEE
Confidence 4789999999753 599999999999999999999999999999999999999999998853 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.+.....+.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||
T Consensus 76 ~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (237)
T TIGR00968 76 FVFQHYALFK-HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154 (237)
T ss_pred EEecChhhcc-CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875332 239999998764333333334456678899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+.++..+++.|.+++++ .++|||++||+++++ +.||++++|++|++++.|+.+++...
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999998643 358999999999997 57999999999999999999888653
No 148
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=354.33 Aligned_cols=209 Identities=31% Similarity=0.430 Sum_probs=176.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
+|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 6 ~l~~~~l~~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG----HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC----cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEE
Confidence 69999999999632 2599999999999999999999999999999999999999999999865 389
Q ss_pred EEecCCCCcccc-cCHHHHHHhhcc----CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 103 FVFQNPDHQVVM-PTVEADVAFGLG----NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 103 ~v~q~~~~~~~~-~tv~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
|++|++...... .++.+++.++.. ..........+++.++++.+|+.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p 161 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQG 161 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999987532222 267777654321 011112233456778899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
++|||||||+|||+.++..+.+.|++++++ |.|||++||+++++ +.||+++++ +|+++..|+++++.+
T Consensus 162 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~--g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 162 QVILLDEPFTGVDVKTEARIISLLRELRDE--GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999999999999999999999999998642 68999999999987 689999877 899999999988754
No 149
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.6e-50 Score=367.36 Aligned_cols=201 Identities=27% Similarity=0.492 Sum_probs=176.6
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------------c
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------------P 100 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------------~ 100 (263)
||+++|++. .+ |+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .
T Consensus 4 ~l~~~~~~~------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~ 76 (354)
T TIGR02142 4 RFSKRLGDF------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76 (354)
T ss_pred EEEEEECCE------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCC
Confidence 899999753 34 99999999999999999999999999999999999999998753 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..+.. .|+.+|+.++.... ...+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|
T Consensus 77 i~~v~q~~~l~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 77 IGYVFQEARLFPH-LSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred eEEEecCCccCCC-CcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 7899999864433 39999998865322 22334556889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+++.|++++++ .|.|||++|||++++ .+||++++|++|+++..|+++++...
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999999998653 368999999999997 57999999999999999999988764
No 150
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=350.60 Aligned_cols=209 Identities=27% Similarity=0.413 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~------ 99 (263)
.++|+++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|++++
T Consensus 10 ~~~l~i~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 10 QEVYQINGMNLWYGQH-----HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred CceEEEeeEEEEECCe-----eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999987 3 699998753
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+ ..|+.+|+.++....+. ..++..+++.++++.+++. +.+++++.+|||||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPF--PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccCHHHHhhceEEEecCCccc--ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 378999997643 24999999875433222 2344456677889999985 3568899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++||+++.+ +.||++++|++|++++.|+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999842 47999999999997 589999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
+++..
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98754
No 151
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-50 Score=329.62 Aligned_cols=205 Identities=31% Similarity=0.404 Sum_probs=186.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++++++..+... ....||++|+|.|++||.++|+|||||||||||-+++|+..|++|+|++.+
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 799999999998653 346899999999999999999999999999999999999999999999843
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
++|||||...+.+.+ |..||+.+++...+....+....+.++|+.+||.+.++.+|.+|||||+|||+|||||+.
T Consensus 85 ~R~~~vGfVFQSF~Lip~l-tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNL-TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred hhccceeEEEEeeeccccc-hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence 589999998765555 899999998776665555566778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEe
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
.|++|+.||||-+||..+-+++.+++-.+.++ .|+|.|+||||...+..|+|.+.|.+|+++++
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999998764 68999999999999999999999999999753
No 152
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=350.92 Aligned_cols=208 Identities=27% Similarity=0.438 Sum_probs=179.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 4 ~l~i~~v~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYGSF-----HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEECCE-----eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 79999999999753 599999999999999999999999999999999999974 799999854
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+.+.++++.+++. +..++++.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFP-TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred ChHHHhcceEEEccccccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 3789999875432 23999999876432222 2344456778889999984 467889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe------CCEEEEe
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME------DGKIVMQ 240 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~------~G~i~~~ 240 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++ +.||++++|+ +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ---DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999842 36999999999997 5899999997 8999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|++++++..
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999988753
No 153
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.4e-50 Score=384.31 Aligned_cols=208 Identities=22% Similarity=0.365 Sum_probs=182.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~i~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 3 ALLQLKGIDKAFPGV-----KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred ceEEEeeeEEEeCCe-----EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC---C-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL---N-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|++|++..+.. .|+.+|+.++.... . ....+.++++.++++.+|+.+..++++.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 78 EAGIGIIHQELNLIPQ-LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred hCCEEEEEcchhccCC-CcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 37999999754333 39999998764321 1 22344456788899999999888999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+.+|++|||||||++||+.++..+++.|+++.++ |.|||++|||++++ .+||++++|++|+++..++++++.
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998543 68999999999998 589999999999999999887653
No 154
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-49 Score=382.58 Aligned_cols=205 Identities=26% Similarity=0.424 Sum_probs=182.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 10 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 84 (510)
T PRK15439 10 PLLCARSISKQYSGV-----EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84 (510)
T ss_pred ceEEEEeEEEEeCCc-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+.. .|+.+|+.++... ..+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 85 ~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 85 QLGIYLVPQEPLLFPN-LSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred hCCEEEEeccCccCCC-CcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 37899999764333 3999999876421 2234567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++ .+||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998643 68999999999998 5899999999999999999887653
No 155
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-51 Score=333.86 Aligned_cols=221 Identities=28% Similarity=0.378 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
+.|+++|+.|+|+.. .+|++|||+-++|+++.|+|.|||||||+||||.=|.+|+.|.|.+++
T Consensus 5 ~~l~v~dlHK~~G~~-----eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 5 NALEVEDLHKRYGEH-----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred cceehhHHHhhcccc-----hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence 469999999999975 599999999999999999999999999999999999999999999864
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhh-ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 164 (263)
+.++|||+.++...+ |+.+|+.-+ ....+.++.+..++++.+|.++|+.+..+.+|..|||||+
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm-tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHM-TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHH-HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 268999998755444 999997653 3345677888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 243 (263)
||++|||||+.+|+++|+|||||+|||+-.-++++.+++++++ |+|.++|||.+.+++ .+.+|+++++|.|-++|+|
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE--grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--CCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999864 689999999999995 6999999999999999999
Q ss_pred hhHHhh-hhhhhhhhhhh
Q 024738 244 VSILNF-IKSRQSSYIER 260 (263)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~ 260 (263)
++++.+ ...+...|++.
T Consensus 237 ~qvf~nP~S~RlkqFlss 254 (256)
T COG4598 237 EQVFGNPQSPRLKQFLSS 254 (256)
T ss_pred HHHhcCCCCHHHHHHHHh
Confidence 999975 45566677653
No 156
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=354.00 Aligned_cols=210 Identities=30% Similarity=0.373 Sum_probs=180.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--------ceEEEEcC-----
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT--------NGHVYVKR----- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--------~G~I~~~~----- 99 (263)
||+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|+ +|+|.+++
T Consensus 1 ml~~~nl~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 1 MLTADHLHVARRHR-----AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred CeEEEEEEEEECCE-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 58999999999753 5999999999999999999999999999999999999998 99999865
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++...+. .|+.+|+.++.... +....+..+.+.++++.+++.+..++++.+|||||+|||
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCC-CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 26899998753333 49999997753111 111233445678899999999889999999999999999
Q ss_pred HHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 168 AIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 168 ~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
+|||||+ .+|++|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ ++||++++|++|++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 9999999 599999999999999999999999999998653 368999999999998 58999999999999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|+++++.+.
T Consensus 234 ~~~g~~~~~~~~ 245 (272)
T PRK13547 234 VAHGAPADVLTP 245 (272)
T ss_pred EEecCHHHHcCH
Confidence 999999887653
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-50 Score=383.20 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR---------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~---------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 4 ~~l~~~nl~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 4 YLLEMKNITKTFGGV-----KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred ceEEEeeeEEEeCCe-----EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 479999999999753 599999999999999999999999999999999999986 899999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC--C-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL--N-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|+||++..+.. .|+.+|+.++.... . ...++..+++.++++.+++.+..++++.+||||||||++||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 79 TERAGIAIIHQELALVKE-LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHCCeEEEEeccccCCC-CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 38999999754332 39999998764322 1 2334445678899999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|+.+|++|||||||++||+.++..+.+.|.++++ .|.|||++|||++++ .+||++++|++|+++..|+++++.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999999864 367999999999998 579999999999999999887764
No 158
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.2e-49 Score=352.03 Aligned_cols=216 Identities=34% Similarity=0.457 Sum_probs=182.2
Q ss_pred eEEEEeEEEEECCC----ccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKK----QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~----~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------- 99 (263)
+|+++||+++|++. .....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 69999999999730 00013699999999999999999999999999999999999999999998854
Q ss_pred -------ceEEEecCCCCcc-cccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHH
Q 024738 100 -------PKSFVFQNPDHQV-VMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 -------~~~~v~q~~~~~~-~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++...+ ...++.+|+.+.... ......+....+.++++.+++. ...++++.+||+||+||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 3799999874222 224899988654321 1233344455788999999997 57899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||+|||+.++..+.+.|++++++ .+.|+|++||+++++. .||++++|++|++++.|+++++++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ-FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH-cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999999999999999999999999998653 3679999999999985 799999999999999999988765
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 242 ~ 242 (268)
T PRK10419 242 F 242 (268)
T ss_pred C
Confidence 3
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.2e-50 Score=348.49 Aligned_cols=189 Identities=28% Similarity=0.425 Sum_probs=163.2
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ceEEEecC-CCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PKSFVFQN-PDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~~~v~q~-~~~~~~~~tv 117 (263)
.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|+ +.. +...|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL-WWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc-CCCCcH
Confidence 3699999999999999999999999999999999999999999999854 37898844 332 223489
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l 197 (263)
.+|+.+.....+...++..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99987754333344445556778899999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
.+.|++++++ .+.|||++||+++++ ..||++++|++|++++.|
T Consensus 193 ~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 193 RNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999998653 357999999999997 579999999999998654
No 160
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-49 Score=346.80 Aligned_cols=208 Identities=26% Similarity=0.425 Sum_probs=178.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~-------- 99 (263)
.|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|++++
T Consensus 4 ~l~~~nl~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFGKN-----HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeCCe-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 69999999999753 59999999999999999999999999999999999986 4 689998854
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ ...|+.+|+.++....+ ....+..+++.++++.+++. +.+++.+.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPF-PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred ChHHhhccEEEEecCCCCC-CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 278999997633 22499999987543222 22334456678889999985 356788999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|+++++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE---KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999853 36999999999997 68999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 235 ~~~ 237 (252)
T PRK14256 235 FTT 237 (252)
T ss_pred HhC
Confidence 754
No 161
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=347.50 Aligned_cols=207 Identities=29% Similarity=0.417 Sum_probs=179.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~---------- 99 (263)
+++++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 2 ~~~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYGKK-----QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEECCE-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 68999999999753 59999999999999999999999999999999999974 6999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|+||++..+ ..|+.+|+.++....+. ......+++.++++.+++. ...++++.+||||||||++||
T Consensus 77 ~~~~i~~~~q~~~l~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 77 LRKNVGMVFQQPNVF--VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HhhhEEEEecCCccc--cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 379999998643 24999999875332222 1233455678899999995 456888999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||+.+|++|||||||+|||+.++..+.+.|+++.. +.|||++||+++++ ..||++++|++|++++.|++.+++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999742 57999999999997 58999999999999999999988754
No 162
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=351.97 Aligned_cols=208 Identities=27% Similarity=0.429 Sum_probs=178.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
..+|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 11 ~~~l~i~nl~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 11 NIIISLQNVTISYGTF-----EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred CceEEEEeEEEEECCE-----EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999987 6999998854
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC----CcccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqR 166 (263)
.++|+||++..+. .|+.+|+.++....+.. .+..+++.++++.+++ .+..++++.+||+|||||
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred cCCHHHHhhceEEEccCCccch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 3799999985432 39999998764332222 2334556778888876 346788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-----------
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED----------- 234 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~----------- 234 (263)
++|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++ .+||++++|++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999999999842 47999999999998 58999999996
Q ss_pred CEEEEecChhhHHhh
Q 024738 235 GKIVMQADGVSILNF 249 (263)
Q Consensus 235 G~i~~~g~~~~~~~~ 249 (263)
|++++.|++.++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998764
No 163
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=382.71 Aligned_cols=209 Identities=27% Similarity=0.361 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 4 PYISMAGIGKSFGPV-----HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred ceEEEeeeEEEcCCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC----CCC---ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN----LNL---THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+.. .|+.+|+.++... .+. ...+..+++.++++.+|+.+..++++.+|||||||||+||
T Consensus 79 ~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 79 QLGIGIIYQELSVIDE-LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred HCCeEEEeecccccCC-CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 38999998754333 3899999875321 111 2234456788999999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++++ .+||++++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999998643 68999999999998 5899999999999999999877643
No 164
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-49 Score=347.37 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=179.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYGEK-----QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEECCe-----eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 589999999999753 599999999999999999999999999999999999875 799999853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+. ...+..+++.++++.+++. +..++++.+||+|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPF-P-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred ccHHHHHhheEEEecCCCcC-C-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 279999998643 2 4999999875433222 2334455677889999874 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK---EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999997 5799999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
No 165
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-49 Score=341.50 Aligned_cols=195 Identities=32% Similarity=0.482 Sum_probs=168.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
+++ ||+|+|+++ .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~~~-~l~~~~~~~-----~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 2 LCV-DIEKRLPDF-----TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred cee-eeeEecCCe-----ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhh
Confidence 455 999999874 24 99999999 99999999999999999999999999999998854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++.... .....++++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 73 ~~~~i~~~~q~~~~~~-~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 73 QQRKIGLVFQQYALFP-HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred HhhcEEEEecCCccCC-CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 3789999875432 239999998754321 2333456678899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|++|||||||+|||+.+++.+.+.|++++++ .|.|||++||+++++ .+||++++|++|++++.|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998653 367999999999998 589999999999998764
No 166
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-49 Score=347.12 Aligned_cols=208 Identities=28% Similarity=0.411 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CC---CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KP---TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p---~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECCe-----eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 479999999999753 5999999999999999999999999999999999985 46 599998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+.. .....+++.++++.+++. +..++++.+||+|||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPF-P-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cchHhhhhcEEEEecCCccC-c-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 379999998643 2 49999998764322322 233456677889999874 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD---DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh---CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999987 5899999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8764
No 167
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-49 Score=350.58 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.+++
T Consensus 20 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYGEK-----RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeCCc-----eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 489999999999753 59999999999999999999999999999999999864 7999998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++....... ....++.+.++++.+++. ...++++.+||||||||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPF--PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred ccHHHHhccEEEEecCCccC--cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 379999987533 249999998764322221 223345567788888884 45688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|++++.|++++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999843 36999999999987 5899999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
++..
T Consensus 250 ~~~~ 253 (268)
T PRK14248 250 IFTS 253 (268)
T ss_pred HHhC
Confidence 8764
No 168
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=389.03 Aligned_cols=218 Identities=26% Similarity=0.316 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEECCCcc------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----
Q 024738 31 GVAIECSNLNYSITKKQR------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----- 99 (263)
.++|+++||++.|+.... ....+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 358999999999962100 013599999999999999999999999999999999999999999999854
Q ss_pred -----------ceEEEecCCC-CcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHH
Q 024738 100 -----------PKSFVFQNPD-HQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -----------~~~~v~q~~~-~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 165 (263)
.++|+||++. ......|+.+|+.+++...+. ...+..+++.++++.+||. ..+++++.+|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 3799999973 122223899998875432222 2344556788999999996 6789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||++||+.++.+++++|++++++ .|.|||+||||++++ .+||+|++|++|++++.|+++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~-~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD-FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999998654 368999999999998 579999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
+++..
T Consensus 550 ~i~~~ 554 (623)
T PRK10261 550 AVFEN 554 (623)
T ss_pred HHhcC
Confidence 98764
No 169
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-49 Score=375.77 Aligned_cols=219 Identities=32% Similarity=0.432 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEEEEcC--------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT----NGHVYVKR-------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~----~G~I~~~~-------- 99 (263)
++|+++||++.|... .....+++||||++.+||++||+|+|||||||+.++|.|++++. +|+|.+++
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 389999999999764 22346999999999999999999999999999999999999887 89998864
Q ss_pred ---------ceEEEecCCCCcccc-cCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccC--CCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVM-PTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQ--RPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqR 166 (263)
.++|+||+|...+.. .++.+.+.-.+..+ ....++.++++.++|+.+||.+... ++|++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 489999998544332 27777665543332 2447788889999999999986544 5999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|.||+||+.+|++||+||||++||+..+.+++++|+++.++ .|+++|+||||+..+ ++||||+||++|++++.|++++
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999865 589999999999997 5799999999999999999999
Q ss_pred HHhhhhh
Q 024738 246 ILNFIKS 252 (263)
Q Consensus 246 ~~~~~~~ 252 (263)
++++..+
T Consensus 242 i~~~p~h 248 (539)
T COG1123 242 ILSNPQH 248 (539)
T ss_pred HHhccCC
Confidence 9986443
No 170
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-49 Score=348.41 Aligned_cols=218 Identities=20% Similarity=0.308 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEECCCc---------------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 32 VAIECSNLNYSITKKQ---------------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~---------------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
..++++||++.|.... ...+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3689999999886521 1235699999999999999999999999999999999999999999999
Q ss_pred EcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 97 ~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+++.+++++|.+..... .|+.+|+.++....+...++..+.+.++++.+++.+..++++.+||+||+||++||||++.+
T Consensus 83 ~~g~~~~~~~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~ 161 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQ-LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVN 161 (264)
T ss_pred ECCEEeEEecccCCCCC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 99988888887643222 38999987653333344445555667888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
|++|||||||+|||+.++..+++.|.++.+ .|.|||++||+++++ +.||++++|++|+++..|+.+++.+....
T Consensus 162 p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~--~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 236 (264)
T PRK13546 162 PDILVIDEALSVGDQTFAQKCLDKIYEFKE--QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEA 236 (264)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHH
Confidence 999999999999999999999999999854 367999999999998 57999999999999999999888765433
No 171
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-49 Score=346.47 Aligned_cols=208 Identities=27% Similarity=0.445 Sum_probs=178.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC---CCC--CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL---LKP--TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl---~~p--~~G~I~~~~------- 99 (263)
++|+++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ .+| ++|+|.+++
T Consensus 2 ~~l~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 2 VKIDARDVNFWYGDF-----HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred cEEEEEEEEEEECCE-----eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 489999999999753 599999999999999999999999999999999997 455 589998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|+||++..+ . .|+.+|+.++....+.. .+...+.+.++++.+++.+ .+++++.+||||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~-~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPF-P-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccHHHHhhheEEEecCCccC-c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 379999997543 2 49999998764332222 2334566788999999853 5688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + ++|||++||+++++ +.||++++|++|++++.|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999984 2 47999999999997 6899999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8764
No 172
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=389.90 Aligned_cols=216 Identities=29% Similarity=0.391 Sum_probs=185.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+++|+... ...++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 34899999999996421 113699999999999999999999999999999999999999999998632
Q ss_pred ----------------ceEEEecCCCCcc-cccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC---cccCCCCCC
Q 024738 100 ----------------PKSFVFQNPDHQV-VMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS---NYLQRPVQT 158 (263)
Q Consensus 100 ----------------~~~~v~q~~~~~~-~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~ 158 (263)
.++|++|++...+ ...|+.+|+.+++.. .+....+.++++.++++.+||. ..+++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 3799999873212 223999999886542 2344556667888999999996 357899999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++ .|+|||+||||++++ .+||+|++|++|++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 9999999999999999999999999999999999999999999998653 368999999999997 58999999999999
Q ss_pred EEecChhhHHh
Q 024738 238 VMQADGVSILN 248 (263)
Q Consensus 238 ~~~g~~~~~~~ 248 (263)
++.|++++++.
T Consensus 248 ~~~g~~~~~~~ 258 (623)
T PRK10261 248 VETGSVEQIFH 258 (623)
T ss_pred cccCCHHHhhc
Confidence 99999988864
No 173
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.8e-49 Score=343.84 Aligned_cols=203 Identities=32% Similarity=0.495 Sum_probs=172.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||++.|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~~~i~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA-----KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred CceEEEeccEEeeCCc-----eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 3489999999999753 599999999999999999999999999999999999999999999875
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+ . .|+.+|+.+........ ...+++.++++.+++. ...++++.+||+||+||++|||||+.+
T Consensus 80 ~~~i~~~~q~~~l~-~-~tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 80 RQQVSYCAQTPTLF-G-DTVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred HhccEEEecccccc-c-ccHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 379999997533 2 39999998753222211 1234567899999996 578999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe-CCEEEEecCh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME-DGKIVMQADG 243 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~-~G~i~~~g~~ 243 (263)
|++|||||||+|||+.++..+.+.|.++.++ .|.|||++||+.++++.||++++|+ ++..+++|..
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVRE-QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhh
Confidence 9999999999999999999999999998653 3679999999999987899999995 5555566643
No 174
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-49 Score=345.46 Aligned_cols=208 Identities=29% Similarity=0.425 Sum_probs=178.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGNY-----EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEECCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 379999999999753 59999999999999999999999999999999999997 4899998854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++....+.. .+...+++.++++.+++. ..+++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPF--PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred chHHHhhccEEEEecCCccC--CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 278999997543 249999998764332222 223345677889999984 45688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|+++..+++++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999842 47999999999997 5799999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8654
No 175
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5.9e-49 Score=346.50 Aligned_cols=208 Identities=28% Similarity=0.375 Sum_probs=178.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p----~~G~I~~~~--------- 99 (263)
+|+++||+++| ++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++++
T Consensus 4 ~l~~~~l~~~~-~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQ-----PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-cc-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 79999999999 32 599999999999999999999999999999999999999 999999854
Q ss_pred --ceEEEecCCCCccc-ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVV-MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 --~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|++|++...+. ..++.+++.+.....+... ..+++.++++.+++.+ .+++++.+|||||+||++|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 48999999742222 2377777655332222222 2356788999999986 57899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++ ++||++++|++|++++.++++++.+.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999999998653 368999999999998 58999999999999999999888654
No 176
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-49 Score=381.42 Aligned_cols=210 Identities=27% Similarity=0.397 Sum_probs=182.0
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEc-------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVK------------- 98 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~------------- 98 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 1 IEVKNLTKKFDGK-----EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred CEEEEEEEEECCe-----EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccc
Confidence 5789999999753 5999999999999999999999999999999999997 7999999885
Q ss_pred ---------------------------------CceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 99 ---------------------------------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 99 ---------------------------------~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
..++|+||++...+...|+.+|+.++....+....+.++++.++++.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEM 155 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12799999732222223899999876543344445556778899999
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E 224 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~ 224 (263)
+||++..++++.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++ .|.|||+||||++.+ .
T Consensus 156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA-SGISMVLTSHWPEVIED 234 (520)
T ss_pred cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHH
Confidence 99998889999999999999999999999999999999999999999999999999998653 368999999999998 5
Q ss_pred cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 225 YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 225 ~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+||++++|++|+++..|+++++...
T Consensus 235 ~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred hcCEEEEEeCCEEeeecCHHHHHHH
Confidence 8999999999999999988877653
No 177
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-49 Score=348.16 Aligned_cols=209 Identities=24% Similarity=0.386 Sum_probs=180.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 18 ~~~l~~~nl~~~~~~~-----~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYYGKK-----EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEECCe-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3489999999999653 69999999999999999999999999999999999986 5899998754
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..+ . .|+.+|+.++....+. ...+..+++.++++.+++. ..+++++.+|||||+|
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~-~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPF-A-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQ 170 (267)
T ss_pred cCChHHHhcceEEEecCCccc-c-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHH
Confidence 379999987543 2 4999999876432222 2334456678889999984 4578899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ ++||++++|++|++++.|+++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K--NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c--CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 2 47999999999997 689999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 88753
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-49 Score=344.36 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=177.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~------- 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYYGDK-----QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEECCE-----EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 379999999999753 5999999999999999999999999999999999999874 89998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+.+.++++.+++. +.+++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFP-TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred cCHHHhhceeEEEeccCccCc-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 3789999975332 23999999875432222 2233445566777777653 45688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++. .||++++|++|++++.|++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 479999999999985 799999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
++..
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8764
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.9e-49 Score=342.64 Aligned_cols=206 Identities=26% Similarity=0.411 Sum_probs=173.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPDG---PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77 (237)
T ss_pred CEEEEEEEecCCCC---ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhc
Confidence 47899999996421 3599999999999999999999999999999999999999999999965 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++.. +..|+.+|+.++.. ........+ .+.++++.+ +++..+++++.+|||||||||+|||||
T Consensus 78 i~~~~q~~~~--~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 78 VGVVLQENVL--FNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred EEEEcCCchh--ccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 7999999753 23499999987532 112222111 123445555 566667889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||++||+.++..+.+.|++++ + |.|||++||+++++..||++++|++|++++.|+++++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDIC-A--GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999984 2 5799999999999877999999999999999999888765
No 180
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.8e-49 Score=346.86 Aligned_cols=203 Identities=27% Similarity=0.407 Sum_probs=175.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
++|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 3 ~~l~~~~l~~~~~~~-----~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~ 77 (251)
T PRK09544 3 SLVSLENVSVSFGQR-----RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY 77 (251)
T ss_pred cEEEEeceEEEECCc-----eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccc
Confidence 379999999999753 599999999999999999999999999999999999999999999976 5899999975
Q ss_pred Ccccc-cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 024738 110 HQVVM-PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188 (263)
Q Consensus 110 ~~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~ 188 (263)
.+..+ .++.+++.+. .+.. .+++.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||+|
T Consensus 78 ~~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 78 LDTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred cccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 43332 2667765432 1111 24567889999999989999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 189 LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||+.++..+++.|++++++ .+.|||++||+++++ +.||++++|++ +++..|+++++.+
T Consensus 151 LD~~~~~~l~~~L~~~~~~-~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRE-LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999999999998653 267999999999997 58999999965 7999999888764
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-49 Score=344.05 Aligned_cols=207 Identities=29% Similarity=0.457 Sum_probs=178.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++||++.|+++ ++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGDF-----QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEECCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 58999999999753 599999999999999999999999999999999999763 699999864
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+. .|+.+|+.++....+. ..++.++++.++++.+++. +..++++.+|||||+||+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred chHHHhccEEEEecCCccCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 3799999875432 4999999876433332 2334456778888998874 456889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++.+ +.||++++|++|++++.++++++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K--DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 2 47999999999987 57999999999999999999888
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 754
No 182
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.7e-49 Score=344.04 Aligned_cols=201 Identities=29% Similarity=0.381 Sum_probs=171.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
+.++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++++..+..+....+..
T Consensus 23 l~~~~~~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 97 (224)
T cd03220 23 LGILGRKGEVGEF-----WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97 (224)
T ss_pred hhhhhhhhhcCCe-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCC
Confidence 7889999999864 69999999999999999999999999999999999999999999998865433332111122
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~ 193 (263)
..|+.+|+.++....+....+.++++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 23999999876433333344445667889999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
+..+.+.|.+++++ +.|||++||+++++ .+||++++|++|++++.|
T Consensus 178 ~~~~~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 178 QEKCQRRLRELLKQ--GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999998643 57999999999997 579999999999998754
No 183
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-48 Score=348.01 Aligned_cols=209 Identities=28% Similarity=0.412 Sum_probs=180.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 19 ~~~l~i~nl~~~~~~~-----~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 19 APAMAAVNLTLGFAGK-----TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred CcEEEEeeEEEEECCE-----EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 4589999999999753 599999999999999999999999999999999999985 799999854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++..... ....+..+.+.++++.+++.. .+++.+.+|||||+||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred chhHHHhhheEEeccCCccCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH
Confidence 3789999986432 499999987542221 233444556678899999863 4678899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD---RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 26999999999997 5899999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8764
No 184
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.1e-49 Score=337.16 Aligned_cols=189 Identities=32% Similarity=0.462 Sum_probs=164.8
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------------
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------------- 99 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------------- 99 (263)
++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 i~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 75 (206)
T TIGR03608 1 LKNISKKFGDK-----IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRR 75 (206)
T ss_pred CcceEEEECCE-----EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHH
Confidence 47999999753 599999999999999999999999999999999999999999998853
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+. ..|+.+|+.+.....+....+..+++.++++.+++++..++++.+||+||+||++|||||+.+|+
T Consensus 76 ~~i~~~~q~~~~~~-~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 76 EKLGYLFQNFALIE-NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred hCeeEEecchhhcc-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3789999875332 23999999875433333344556678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
+|||||||+|||+.+++.+.+.|+++.++ +.|+|++||+++.+..||++++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDE--GKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999998643 67999999999987789999875
No 185
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=343.41 Aligned_cols=207 Identities=29% Similarity=0.429 Sum_probs=178.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYGEK-----KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeCCc-----eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 79999999999753 599999999999999999999999999999999999874 899998853
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+ . .|+.+|+.++....+. .....++.+.++++.+++.. ..++++.+|||||+||+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPF-P-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hHHHhhhhEEEEecCCccC-c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 379999998643 2 4999999875432222 22334556778899999853 47889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++.+ ++||++++|++|+++..|+++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999853 47999999999987 58999999999999999999888
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 653
No 186
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6e-49 Score=339.27 Aligned_cols=201 Identities=35% Similarity=0.462 Sum_probs=173.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|+++.|+++. +...+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 78999999997421 113699999999999999999999999999999999999999999999853
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++.... ....++..+.+.++++.+|+.+..++++.+||+|||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~-~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 81 RRNIGYIFQAHNLLG-FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HhheEEEcCChhhcC-CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3799999986433 249999998764322 133445556788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
|++|||||||+|||+.++..+.+.|+++.++ .+.|||++||+++..++||++++|++|++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLARE-QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999998643 36899999999987778999999999986
No 187
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=350.15 Aligned_cols=210 Identities=24% Similarity=0.397 Sum_probs=179.5
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-----
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR----- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~----- 99 (263)
..++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 36 ~~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF-----EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 34589999999999753 59999999999999999999999999999999999864 4999998853
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqk 164 (263)
.++|++|++..+ . .|+.+|+.++....+.. ....++++.++++.+++. +.+++++.+||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPF-P-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred cccchHHhhhcEEEECCCCCCC-c-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 378999998543 2 39999998764322222 233345677888888873 567889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.. +.|||++||+++++ ++||++++|++|+++..|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999853 37999999999997 58999999999999999999
Q ss_pred hhHHhh
Q 024738 244 VSILNF 249 (263)
Q Consensus 244 ~~~~~~ 249 (263)
.++.+.
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988764
No 188
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.4e-49 Score=377.97 Aligned_cols=215 Identities=29% Similarity=0.422 Sum_probs=182.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-C----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-R---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-~---------- 99 (263)
.++|+++||+++|++...+..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ +
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 35899999999995310011359999999999999999999999999999999999999999999984 2
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----ccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGqkq 165 (263)
.++|+||++..+. ..|+.+|+.++... ....++.++++.++++.+++.. .+++++.+|||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYP-HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCC-CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 2799999875433 23999999865322 2223334467788999999974 578999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ .|.|||++|||++++ ++||++++|++|++++.|++.
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE-MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 368999999999998 589999999999999999988
Q ss_pred hHHh
Q 024738 245 SILN 248 (263)
Q Consensus 245 ~~~~ 248 (263)
++.+
T Consensus 514 ~~~~ 517 (520)
T TIGR03269 514 EIVE 517 (520)
T ss_pred HHHh
Confidence 7754
No 189
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=329.92 Aligned_cols=207 Identities=32% Similarity=0.464 Sum_probs=190.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v 104 (263)
++.+++++.+|.++. ..+|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++++ -|.|
T Consensus 3 ~l~~~~~sl~y~g~~---~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvV 79 (259)
T COG4525 3 MLNVSHLSLSYEGKP---RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79 (259)
T ss_pred eeehhheEEecCCcc---hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeE
Confidence 688999999998752 46999999999999999999999999999999999999999999999863 6899
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
||++.+.++. ++.+|+.|++...++.+.+..+.+.+.+..+||.+..++++-+|||||||||.|||||+.+|++|+|||
T Consensus 80 FQ~~~LlPWl-~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 80 FQNEALLPWL-NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred eccCccchhh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 9999887777 999999999988899888888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEe--CCEEEEecChh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYME--DGKIVMQADGV 244 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~--~G~i~~~g~~~ 244 (263)
|+++||.-+++.+.++|-+++++ .|+.+++||||++++- .++++++|. .|+|++.-++.
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999998775 4789999999999975 699999997 58898776653
No 190
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=348.15 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=177.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++
T Consensus 22 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYGED-----HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred ceEEEEeeeEEEECCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 3489999999999753 59999999999999999999999999999999999987 6999998854
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcC----CCcccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVG----MSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..+ ..|+.+|+.++....... .....+.+.++++.++ +.+.+++++.+|||||||
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPF--PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred cccHHHHhhhEEEEecCCccc--cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 379999997533 249999998764322222 2223445667777774 445678899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK---DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc---CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999853 47999999999997 579999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88754
No 191
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-48 Score=342.78 Aligned_cols=208 Identities=29% Similarity=0.435 Sum_probs=178.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 3 PKIKIRGVNFFYHKH-----QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred ceEEEEEEEEEECCe-----eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 479999999999753 5999999999999999999999999999999999999997 69998743
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+.. .++..+.+.++++.+++. +..++++.+||||||||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPF-P-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred cChHHhhceEEEEecCCccC-c-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 389999998643 2 39999998764322222 223345667778888864 45789999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ ..||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q--NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999883 2 57999999999997 5799999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
No 192
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-48 Score=340.01 Aligned_cols=206 Identities=32% Similarity=0.482 Sum_probs=174.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++. .++++|+||++++|++++|+||||||||||+|+|+|+++|++|+|++++ .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDG---PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred CEEEEEEEEeCCCC---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 47899999997531 2589999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++..+ ..|+.+|+.++.... ...+..+ .+.++++.+ ++....++++.+||+|||||++|||||
T Consensus 78 i~~~~q~~~~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 78 IGLVSQDVFLF--NDTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred EEEeCCCCeec--cccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 79999997543 249999998754321 2222211 234556666 677778889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++..||++++|++|++++.++++++.+.
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLM-K--NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 99999999999999999999999999999984 2 5799999999999867999999999999999998888654
No 193
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-48 Score=342.79 Aligned_cols=207 Identities=28% Similarity=0.423 Sum_probs=176.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~-------- 99 (263)
.-+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 5 ~~~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWYGSK-----QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEECCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 45789999999753 59999999999999999999999999999999999986 4799999854
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|+||++..+ ..|+.+|+.++....+. ...+.++.+.++++.+++.+ .+++++.+||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~--~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPF--PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred chHHHhhhEEEEecCcccc--cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 378999997533 23899999875322222 22334456778899999964 4678899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ +.||++++|++|++++.|++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K--NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 57999999999997 5799999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8764
No 194
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-48 Score=348.21 Aligned_cols=208 Identities=28% Similarity=0.455 Sum_probs=178.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 37 ~~~l~i~~l~~~~~~~-----~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYGDE-----QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEECCE-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999987 6899998853
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .++.+|+.+.....+... +..+++.++++.+++. +.+++++.+||||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~-~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPF-P-KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred ccchHhhhccEEEEecCCccC-c-CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 378999997533 2 399999987643322222 3456688899999985 46788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEE-EEeCCEEEEecChh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAF-YMEDGKIVMQADGV 244 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~-~l~~G~i~~~g~~~ 244 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++ .+||+++ +|++|++++.|+++
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~---~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE---EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 26999999999997 5799975 67999999999998
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87653
No 195
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=342.37 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=177.0
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKF-----EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCe-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 479999999999753 59999999999999999999999999999999999975 5 589998854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++....+.. .+...+.+.++++.+++. +..++++.+||+|||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 3789999976433 49999998764322222 222344566778888763 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD---QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999998 5799999999999999999988
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
++..
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 8764
No 196
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-49 Score=378.20 Aligned_cols=239 Identities=29% Similarity=0.472 Sum_probs=196.2
Q ss_pred eeeecccCCCccCCCCCCCCCCCCCCCCCcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHH
Q 024738 2 RLVRSFTVTPHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLl 81 (263)
|||+.++-.|.++..+ ...|.. -.-.|+++||+|.|+.+. ..++|+|+||+|+|||++|||||||+||||+.
T Consensus 440 rvFel~dr~P~i~~~G-~~~p~~-----~~G~IeF~~VsFaYP~Rp--~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLTG-TLAPDH-----LQGVIEFEDVSFAYPTRP--DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred HHHHHhccCCCCCCCC-cccccc-----ccceEEEEEeeeecCCCC--CchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 5676666666665432 111111 123699999999998753 46899999999999999999999999999999
Q ss_pred HHHhCCCCCCceEEEEcC-------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH-----H
Q 024738 82 KVLAGLLKPTNGHVYVKR-------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-----L 143 (263)
Q Consensus 82 k~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-----l 143 (263)
++|..++.|++|+|.++| +||+|.|+|.+ |..|++|||.|+.. +.+.+++.+.++.+ +
T Consensus 512 sLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL--Fs~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI 587 (716)
T KOG0058|consen 512 SLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL--FSGSIRENIAYGLD--NATDEEIEAAAKMANAHEFI 587 (716)
T ss_pred HHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee--ecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHH
Confidence 999999999999999976 58999999963 55699999999876 44555554443332 2
Q ss_pred HHc--CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc
Q 024738 144 DAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 144 ~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
..+ |.+.....+..+||||||||+||||||+++|.+|||||.||+||.++...+.+.|.+..+ ++|||++.|++.
T Consensus 588 ~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRLS 664 (716)
T KOG0058|consen 588 TNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRLS 664 (716)
T ss_pred HhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhhh
Confidence 222 444556677889999999999999999999999999999999999999999999998754 479999999999
Q ss_pred hhhcCCEEEEEeCCEEEEecChhhHHhhhhhhhh
Q 024738 222 ELEYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255 (263)
Q Consensus 222 ~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
.++.||+|+++++|++++.|+.+|+++...+.+.
T Consensus 665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~ 698 (716)
T KOG0058|consen 665 TVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYA 698 (716)
T ss_pred HhhhccEEEEEcCCeEEecccHHHHhhCcccHHH
Confidence 9999999999999999999999999987544443
No 197
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=342.14 Aligned_cols=219 Identities=28% Similarity=0.430 Sum_probs=182.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~------ 99 (263)
.++|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+.+ | ++|+|.+++
T Consensus 4 ~~~i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 4 EIILSTKNLNLWYGEK-----HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred cceEEEeeeEEEECCe-----eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3489999999999753 59999999999999999999999999999999999975 3 489998853
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. .|+.+|+.++....+. ...+.++.+.++++.+++. ...++++.+||+||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred ccchhhhhceEEEEecCCccCc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 3789999986432 4999999876433222 2233445677888888874 3568899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|+++..|+++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~---~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK---EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh---CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 99999999999999999999999999999999999999853 36999999999998 589999999999999999999
Q ss_pred hHHhhhh-hhhhhhhh
Q 024738 245 SILNFIK-SRQSSYIE 259 (263)
Q Consensus 245 ~~~~~~~-~~~~~~~~ 259 (263)
++..... .....|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (253)
T PRK14261 234 QIFENPHEELTENYIT 249 (253)
T ss_pred HHHhCCCcHHHHHHhc
Confidence 8875422 23445554
No 198
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=343.97 Aligned_cols=211 Identities=30% Similarity=0.481 Sum_probs=180.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
..++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~~~i~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 7 AEDVFNISRLYLYINDK-----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhhheeeeeEEEecCCc-----eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 34689999999999864 599999999999999999999999999999999999999997665432
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+++.++++.+++. +..++.+..||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFP-HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ 160 (257)
T ss_pred cCCHHHHhcceEEEccCCccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHH
Confidence 3799999876332 23999999876432222 2344456788899999996 3567899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++ ..||++++|++|+++..|+++
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN---EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998843 37999999999998 689999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 88764
No 199
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.1e-49 Score=341.31 Aligned_cols=191 Identities=33% Similarity=0.480 Sum_probs=166.5
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEEecCCCCcccccCHHHHHHhhc
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .+|++|++..+.. .|+.+|+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~-~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPW-LTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCC-CCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999752 4899998764332 39999998753
Q ss_pred cC--CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 126 GN--LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
.. ......+..+++.++++.+++++..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 21 1233344456688899999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 204 LLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
++++ .|+|||++||+++++ ++||++++|++|++++.|+..++
T Consensus 160 ~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 160 IWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 8653 367999999999997 57999999999999999887655
No 200
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-48 Score=343.52 Aligned_cols=210 Identities=30% Similarity=0.407 Sum_probs=179.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~------- 99 (263)
++|+++|++++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++
T Consensus 6 ~~l~~~nl~~~~~~~-----~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ-----KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred ceEEEeeEEEEeCCe-----eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 379999999999753 5999999999999999999999999999999999999985 89887743
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.+.....+. ...+..+++.++++.+++. +..++++.+|||||+||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLF-P-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred cchHHhhccEEEEecCCccC-c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 278999987633 2 4999999875432222 2233445677889999874 35688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-----CEEEEe
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED-----GKIVMQ 240 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~-----G~i~~~ 240 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ .+.|||++||+++++ +.||++++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~-~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR-SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 99999999999999999999999999999999999997643 367999999999998 58999999999 999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|+++++++.
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
No 201
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.1e-49 Score=387.06 Aligned_cols=208 Identities=31% Similarity=0.510 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..++++||+|+|+... .++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 470 g~I~~~nvsf~y~~~~---~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 470 GEIEFENVSFRYGPDD---PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred ceEEEEEEEEEeCCCC---cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 3699999999998653 3699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAr 171 (263)
++|||+|++. ++..|++||+.++... .+.++..+.+. +.+..+ |++.........||||||||++|||
T Consensus 547 ~~ig~V~Q~~~--Lf~gSI~eNi~l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 547 RQVGYVLQDPF--LFSGSIRENIALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred hheeEEcccch--hhcCcHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 5899999974 4566999999987433 23333332221 112221 4445556667899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+++|++||||||||+||+.+++.+.+.|.++.. |+|+|++||++..++.||||++|++|+++++|+++++++.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~---~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQ---GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc---CCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999999853 5799999999999999999999999999999999999876
No 202
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=341.03 Aligned_cols=207 Identities=28% Similarity=0.431 Sum_probs=177.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYGEN-----QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEECCe-----eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 69999999999753 599999999999999999999999999999999999986 599998854
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++..+. .|+.+|+.++....+.. .....+++.++++.+++. +..++++.+|||||+|||+
T Consensus 78 ~~~~~~~i~~~~q~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred hHHHHhheeEEecCCCcCc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 3789999976432 49999998754322222 233345677788888874 4567889999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ .+||++++|++|++++.|+++++.
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK---NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999853 36999999999997 579999999999999999988876
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 43
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=373.85 Aligned_cols=204 Identities=27% Similarity=0.409 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 3 PYLSFDGIGKTFPGV-----KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred ceEEEeeeEEEECCE-----EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 489999999999753 599999999999999999999999999999999999999999999853
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC--CC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN--LN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+.. .|+.+|+.++... .+ ....+.++++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 78 ~~~i~~v~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 78 AAGVAIIYQELHLVPE-MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred hCCEEEEEechhccCC-CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 38999998754332 3999999875321 12 233445567889999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++++ .+||++++|++|+++..++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999864 368999999999998 57999999999999877654
No 204
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-48 Score=336.74 Aligned_cols=195 Identities=33% Similarity=0.529 Sum_probs=166.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|+++. .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 2 RIEFRNVSFSYPNQE---IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred eEEEEEEEEEcCCCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 388999999996421 3599999999999999999999999999999999999999999999865
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCC-----------CCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP-----------VQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~ 168 (263)
.++|++|++..+ . .|+.+|+.++... .. .+.+.++++.+++.+.+++. +.+||||||||++
T Consensus 79 ~i~~~~q~~~~~-~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 79 NIGYVPQDVTLF-Y-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred hEEEeCCCCccc-c-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 379999998643 2 4999998765321 11 23455678888887666654 4699999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
||||++.+|++|||||||+|||+.++..+++.|+++++ + .|||++||+++++++||++++|++|++++.|
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--D-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--C-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999853 2 6999999999988889999999999997653
No 205
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-48 Score=344.18 Aligned_cols=208 Identities=30% Similarity=0.451 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 24 ~~l~~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 24 TALEVRNLNLFYGDK-----QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred cEEEEEEEEEEECCe-----eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 489999999999753 59999999999999999999999999999999999987 4899998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. . |+.+|+.+.....+. .....++++.++++.+++. ...++++.+|||||+||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~-~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFP-K-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred cCHHHHhccEEEEecCCccCc-c-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHH
Confidence 3789999875432 3 999999875433322 2233345677889999885 35788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|++++.|++++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999997 5899999999999999999988
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 8653
No 206
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-48 Score=344.20 Aligned_cols=207 Identities=26% Similarity=0.406 Sum_probs=176.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|++++
T Consensus 9 ~~l~i~~v~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGSF-----LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEECCE-----EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 489999999999753 59999999999999999999999999999999999986 4899998854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+ . .|+.+|+.++....+.. .+..+++.++++.+++. ...++++.+|||||+||+
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPF-P-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred cChHHHhhhEEEEccCCccc-c-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 379999987533 2 39999998764322222 22335566777887774 356889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe---------CCEE
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME---------DGKI 237 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~---------~G~i 237 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||+++++ ++||++++|+ +|++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE---QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999999999853 36999999999997 5899999998 8999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|+++++++.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 207
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-48 Score=375.96 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++|++++|++.. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4799999999996311 013699999999999999999999999999999999999986 799998743
Q ss_pred ----------ceEEEecCCCCcc-cccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHH
Q 024738 100 ----------PKSFVFQNPDHQV-VMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~-~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk 164 (263)
.++|+||++...+ ...++.+++.+.... .+....+..+++.++++.+||.+ ..++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 3799999874222 223888887654321 23344455677889999999975 46899999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||++||+.++..++++|++++++ .|.|||+||||++++ .+||+|++|++|++++.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998653 368999999999997 58999999999999999999
Q ss_pred hhHHh
Q 024738 244 VSILN 248 (263)
Q Consensus 244 ~~~~~ 248 (263)
++++.
T Consensus 242 ~~~~~ 246 (529)
T PRK15134 242 ATLFS 246 (529)
T ss_pred HHHhh
Confidence 88764
No 208
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-49 Score=328.54 Aligned_cols=216 Identities=32% Similarity=0.468 Sum_probs=188.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+.+||+++..++ .+|+++||++.+||+.+|+||||||||||||.|+|-+.|++|++.+++
T Consensus 1 mi~a~nls~~~~Gr-----~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~ 75 (259)
T COG4559 1 MIRAENLSYSLAGR-----RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75 (259)
T ss_pred CeeeeeeEEEeecc-----eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHH
Confidence 58999999999775 599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh--
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE-- 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-- 175 (263)
+.+.++|+....|.+ ||.|-+.++...++. ...+..+.+.++|...++..+..+...+|||||||||.+||+|+.
T Consensus 76 ~raVlpQ~s~laFpF-tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 76 HRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred HhhhcccCcccccce-EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHcc
Confidence 358999997765555 999999998654422 233555668889999999999999999999999999999999985
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 176 ----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 176 ----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
++++|+||||||+||+..+..++++.++++++ |..|+.|-||++.+ .|||||++|++|++++.|+|.++++.
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~- 231 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD- 231 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH-
Confidence 45699999999999999999999999999875 46899999999997 58999999999999999999999875
Q ss_pred hhhhhhh
Q 024738 251 KSRQSSY 257 (263)
Q Consensus 251 ~~~~~~~ 257 (263)
+.....|
T Consensus 232 Etl~~vy 238 (259)
T COG4559 232 ETLERVY 238 (259)
T ss_pred HHHHHHh
Confidence 3344444
No 209
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-48 Score=342.12 Aligned_cols=208 Identities=29% Similarity=0.409 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.+++
T Consensus 6 ~~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 6 PAIKVKDLSFYYNTS-----KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred ceEEEEEEEEEECCe-----EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 379999999999753 599999999999999999999999999999999999985 489999853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++....+ ....+..+.+.++++.+++. +.+++++.+||+||+||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred cchHhhhhheEEEecccccCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 3799999986432 499999987643222 22334445677889999883 46788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe-----CCEEEEe
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME-----DGKIVMQ 240 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~-----~G~i~~~ 240 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|+ +|++++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS---ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999999999853 37999999999998 5899999998 5999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|++.++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998653
No 210
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.3e-48 Score=339.06 Aligned_cols=207 Identities=31% Similarity=0.492 Sum_probs=171.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
++++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 l~i~~l~~~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRP--DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCC--CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 47899999997421 13599999999999999999999999999999999999999999999865 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++..+ ..|+.+|+.++.... ...+..+ .+.++++.+ ++....++++.+|||||+||++|||||
T Consensus 79 i~~~~q~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 79 IGLVSQEPVLF--DGTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EEEECCchhhh--hhhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 89999987532 249999998753321 1122111 122333444 566667888999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|+++. +|.|||++||+++++..||++++|++|++++.++.+++...
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999999999999874 36899999999999888999999999999999998887653
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-48 Score=373.01 Aligned_cols=206 Identities=24% Similarity=0.371 Sum_probs=177.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~----------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 1 ~l~i~~l~~~~~~~-----~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 1 LLEMKGIVKTFGGV-----KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred CEEEEeEEEEeCCe-----EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 48999999999753 599999999999999999999999999999999999987 799999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCC--C--CChHHHHHHHHHHHHHcCCCccc-CCCCCCCChHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNL--N--LTHDEVRSKVAKALDAVGMSNYL-QRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++..+.. .|+.+|+.++.... . ...++..+++.++++.+++.+.. ++++.+|||||||||+|||
T Consensus 76 ~~~~i~~v~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPE-LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCC-CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 38999999754332 39999998764321 1 22334456788899999998654 6789999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++ .+||++++|++|+++..++++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999864 368999999999998 57999999999999999887654
No 212
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.4e-48 Score=337.77 Aligned_cols=196 Identities=31% Similarity=0.388 Sum_probs=168.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEEcC-----------ceEEEecCCCCccc-ccC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVKR-----------PKSFVFQNPDHQVV-MPT 116 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p----~~G~I~~~~-----------~~~~v~q~~~~~~~-~~t 116 (263)
+|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.+++ .++|++|++...+. ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 899999864 48999999742222 238
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC---cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 024738 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS---NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193 (263)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~ 193 (263)
+.+|+.+.....+....+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 888886654322222334456788999999998 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+..+.+.|++++++ .+.|||++||+++++ .+||++++|++|++++.|++++++..
T Consensus 161 ~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 161 QARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999998653 357999999999998 58999999999999999999988753
No 213
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.1e-48 Score=335.44 Aligned_cols=197 Identities=28% Similarity=0.359 Sum_probs=166.2
Q ss_pred eEEEEeEEEEECCCcc--ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc--C---------
Q 024738 33 AIECSNLNYSITKKQR--KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--R--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~--~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~--~--------- 99 (263)
||+++|++++|+.+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4899999999964210 01369999999999999999999999999999999999999999999985 2
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++..+.. .|+.+|+.+.....+....+..+++.++++.+++.+ ..++++.+||+|||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPR-VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCC-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 36899999864332 389999876543233333444567788999999986 458899999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEE
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYM 232 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l 232 (263)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|||++||+.+++ .+||+++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA--RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999854 368999999999988 489999876
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-48 Score=335.13 Aligned_cols=205 Identities=30% Similarity=0.479 Sum_probs=170.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|++. ..+++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYDEK----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecCCC----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 48999999999742 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++..+ ..|+.+|+.++.... ...+..+ .+.++++.+ ++...+++++.+||||||||++||||
T Consensus 78 ~i~~~~q~~~~~--~~tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 78 MIGVVLQDTFLF--SGTIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred hEEEecCCchhh--hhHHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 379999997532 239999988753221 1111111 122334443 55556677789999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.+++.+++.|+++. + +.|||++||+++++..||++++|++|++++.++.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLM-K--GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999874 2 579999999999987799999999999999998877754
No 215
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-48 Score=373.09 Aligned_cols=201 Identities=22% Similarity=0.311 Sum_probs=174.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRLSDT-----KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEcCCe-----eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 69999999999753 599999999999999999999999999999999999999999998853
Q ss_pred ceEEEecCCCCccc-------ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVV-------MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~-------~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++....+ ..++.+++.+. .+.++++.++++.+++.+..++++.+|||||||||+||||
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHH
Confidence 26899998643211 12566654321 1234567889999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++ ++||++++|++|+++..|+++++.+
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998643 68999999999998 5899999999999999999887654
No 216
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.8e-48 Score=374.73 Aligned_cols=217 Identities=24% Similarity=0.375 Sum_probs=183.0
Q ss_pred cceEEEEeEEEEECCCcc------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----
Q 024738 31 GVAIECSNLNYSITKKQR------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----- 99 (263)
.++|+++|++++|++... +..++|+|+||+|++||+++|+||||||||||+|+|+|++ |++|+|++++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 358999999999963100 0136999999999999999999999999999999999998 5899999864
Q ss_pred -----------ceEEEecCCCC-cccccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHH
Q 024738 100 -----------PKSFVFQNPDH-QVVMPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 -----------~~~~v~q~~~~-~~~~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk 164 (263)
.++|+||++.. .+...|+.+|+.++.... .....+.++++.++++.+++. ...++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 27999998731 222239999998764322 123344456788999999997 578999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ .|.|||+||||++++ .+||++++|++|++++.|++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK-HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998653 368999999999998 57999999999999999999
Q ss_pred hhHHhh
Q 024738 244 VSILNF 249 (263)
Q Consensus 244 ~~~~~~ 249 (263)
+++++.
T Consensus 511 ~~~~~~ 516 (529)
T PRK15134 511 ERVFAA 516 (529)
T ss_pred HHHhcC
Confidence 998764
No 217
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-48 Score=371.87 Aligned_cols=204 Identities=24% Similarity=0.345 Sum_probs=177.5
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------ce
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------------PK 101 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------------~~ 101 (263)
++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 ~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 1 MSNISKSFPGV-----KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CCceEEEeCCE-----EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 46899999753 599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhcc-CCC--CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLG-NLN--LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
+|++|++.... ..|+.+|+.++.. ..+ ....+..+++.++++.+++....++++.+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ 154 (491)
T PRK10982 76 SMVHQELNLVL-QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154 (491)
T ss_pred EEEeccccccc-CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 99999975333 3499999987532 111 1233445678889999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++ .+||++++|++|++++.++++++.
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999864 368999999999998 579999999999999999887753
No 218
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=364.05 Aligned_cols=216 Identities=19% Similarity=0.335 Sum_probs=183.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCC
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~ 109 (263)
..++++++||+++|+++. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++...++.+.+.
T Consensus 18 ~~~mL~lknL~~~~~~~~--~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~ 95 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGE--YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSG 95 (549)
T ss_pred ccceeEEEEEEEecCCCc--cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccc
Confidence 345899999999997632 135999999999999999999999999999999999999999999999886555554433
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.... .|+.+|+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 96 l~~~-lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 96 LNGQ-LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred cCCC-CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 2222 399999877433233444555566778999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
|+.++..+++.|+++++ .|.|||++|||++++ ..||++++|++|+++..|+++++....
T Consensus 175 D~~sr~~LlelL~el~~--~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 175 DQTFTKKCLDKMNEFKE--QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999999853 367999999999998 579999999999999999998877643
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.1e-47 Score=337.55 Aligned_cols=206 Identities=29% Similarity=0.394 Sum_probs=173.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR---------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~---------- 99 (263)
++|+++||+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|++++
T Consensus 6 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 6 PILEIKNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred ceEEEEeEEEEeCCE-----EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 379999999999753 599999999999999999999999999999999998 589999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC----C---CChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL----N---LTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQKQR 166 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqR 166 (263)
.++|++|++..+.. .++.+++.+..... . ....+..+++.++++.+++. ...++++. .|||||+||
T Consensus 81 ~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIPG-VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hheeeEEEEecccccccc-ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 25788998754332 37888876543210 1 11223345677899999997 46788887 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 244 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +|.|||++||+++++. . ||++++|++|++++.|+++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT--SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999999999864 3689999999999985 5 8999999999999999887
Q ss_pred h
Q 024738 245 S 245 (263)
Q Consensus 245 ~ 245 (263)
.
T Consensus 238 ~ 238 (252)
T CHL00131 238 L 238 (252)
T ss_pred h
Confidence 3
No 220
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-48 Score=342.65 Aligned_cols=207 Identities=26% Similarity=0.377 Sum_probs=175.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 19 ~~l~~~nl~~~~~~~-----~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGF-----LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeCCe-----EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 489999999999753 599999999999999999999999999999999999863 689998753
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ . .++.+|+.++....... ....+.+.++++.+++. +.+++++.+|||||+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~-~-~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPF-P-KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred chhHHHhhcEEEEccCCccc-c-ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHH
Confidence 378999997533 2 39999998753222221 12334556778888763 567889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe---------CCEE
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME---------DGKI 237 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~---------~G~i 237 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++ ++||++++|+ +|++
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE---QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999999999852 47999999999998 5899999998 8999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|++++++..
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.1e-48 Score=334.27 Aligned_cols=205 Identities=25% Similarity=0.339 Sum_probs=171.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~---------- 99 (263)
.++++|++++|++.. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 478999999997531 12469999999999999999999999999999999999999 9999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCC---CChHHHHHHHHH-HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLN---LTHDEVRSKVAK-ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|++|++..+.. .|+.+|+.++..... .........+.+ +++.+++.+..++.+.+||+||+||++|||||+.
T Consensus 82 ~i~~~~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 82 CVAYVRQDDILLPG-LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred cEEEeCCCCccCcC-CcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 48999998754332 399999987532211 111222234445 8999999988899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc-chh-hcCCEEEEEeCCEEEEec
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL-EEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~-~~~-~~~d~v~~l~~G~i~~~g 241 (263)
+|++|||||||+|||+.++..+.+.|+++.++ +.|+|++||++ +++ +.||++++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998643 67999999998 465 689999999999998764
No 222
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=349.21 Aligned_cols=211 Identities=27% Similarity=0.427 Sum_probs=178.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
..+|+++|++++|.+.. .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 78 ~~~i~~~nls~~y~~~~---~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRT---KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CceEEEEeeEEEecCCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 34899999999996421 369999999999999999999999999999999999986 5799998742
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHH-HHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE-VRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|+||+|..+ ..|+++|+.++....+...++ ..+.+.++++.+++. ...++++.+|||||||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~--~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPF--EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred ccchHhhhccEEEEecCCccC--CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 489999998643 349999998764322232222 234466778888773 4568899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+. +||+|++|++|++++.|++.
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998853 479999999999985 69999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++++.
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99864
No 223
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-48 Score=334.54 Aligned_cols=205 Identities=29% Similarity=0.468 Sum_probs=170.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++ ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .
T Consensus 1 l~~~~l~~~~~~~----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 1 IEFENVTFAYDPG----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred CEEEEEEEEeCCC----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4789999999642 2599999999999999999999999999999999999999999999965 2
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++..+ ..|+.+|+.++... ....+..+ .+.+.++.+ ++....++++.+||+|||||++|||||
T Consensus 77 i~~~~q~~~~~--~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 77 IGVVPQDTVLF--NDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred EEEECCCChhh--cchHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 79999997533 34999999875322 22222111 122333444 555566778899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|.++.+ |.|||++||+.+++..||++++|++|++++.|+.+++.+.
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK---GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999998742 5799999999999877999999999999999998887653
No 224
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-49 Score=330.62 Aligned_cols=217 Identities=29% Similarity=0.403 Sum_probs=191.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
|++++||+|+|+++ .+++++|++|++|.+++|+|||||||||||.+++.|+++++|+|++++
T Consensus 1 MI~i~nv~K~y~~~-----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk 75 (252)
T COG4604 1 MITIENVSKSYGTK-----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAK 75 (252)
T ss_pred CeeehhhhHhhCCE-----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHH
Confidence 68999999999875 699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+++.+-|.......+ ||++.+.||.-.+ +....+.+..+.++++.++|+++.+++..+||||||||..+|+.++.+.
T Consensus 76 ~lSILkQ~N~i~~rl-TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 76 KLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHhhchhhhee-EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 356777876533333 9999998873222 3345667788999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhhhhhhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKSRQSS 256 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 256 (263)
++++||||.++||.....++++.|++++++ -|+||++|-||++++. ++|+|+-|++|+++..|++++++++ +...+.
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~e-l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~-~~L~ei 232 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADE-LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP-EILSEI 232 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHH-hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-HHHHHH
Confidence 999999999999999999999999999875 4789999999999985 8999999999999999999999875 333443
Q ss_pred h
Q 024738 257 Y 257 (263)
Q Consensus 257 ~ 257 (263)
|
T Consensus 233 y 233 (252)
T COG4604 233 Y 233 (252)
T ss_pred h
Confidence 4
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=337.92 Aligned_cols=208 Identities=29% Similarity=0.397 Sum_probs=179.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.+.+.+++++++|+++ ++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|++++
T Consensus 6 ~~~~~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 6 PIVMDCKLDKIFYGNF-----MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CceEEEEeEEEEeCCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 3479999999999753 599999999999999999999999999999999999986 799998864
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++...... ..+..+++.++++.+++.+ ..++++.+||+||+||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~--~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF--SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred ccchHhhhhceEEEecCCccc--cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 279999998643 35999999876433222 2334567888999999853 4467889999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe--------CCEE
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME--------DGKI 237 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~--------~G~i 237 (263)
++|||||+.+|++|||||||+|||+.++.++++.|+++. + +.|+|++||+++++ ++||++++|+ +|++
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~--~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K--DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE
Confidence 999999999999999999999999999999999999984 2 47999999999987 5899999996 8999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|+++++++.
T Consensus 235 ~~~g~~~~~~~~ 246 (261)
T PRK14263 235 VEMGPTAQIFQN 246 (261)
T ss_pred EEeCCHHHHHhC
Confidence 999999998764
No 226
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.8e-48 Score=375.27 Aligned_cols=205 Identities=33% Similarity=0.491 Sum_probs=173.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||++.|.++ .++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+++
T Consensus 349 ~i~~~~vsf~~~~~----~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSPDG----KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEeccCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHh
Confidence 59999999876532 36999999999999999999999999999999999999 9999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH-----HHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-----ALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++||+|+|. .+..|++||+.++.. ..+.++..+.++. .++.+ |++.........||||||||++||||
T Consensus 424 ~i~~v~Q~~~--LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 424 HLSWVGQNPQ--LPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred heEEecCCCc--CCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 5899999985 345699999998632 2444444333221 23333 45555555677899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++.
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 9999999999999999999999999999998742 5799999999999999999999999999999999999865
No 227
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-47 Score=330.56 Aligned_cols=192 Identities=27% Similarity=0.343 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ce
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PK 101 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~ 101 (263)
++|+++|++++|+++ ++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 10 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 10 PLLAAHALAFSRNEE-----PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred ceEEEeeEEEecCCc-----eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 379999999999753 599999999999999999999999999999999999999999999975 27
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+.. .|+.+|+.+.....+. ...+.+.++++.+++.+..++++.+||+|||||++||||++.+|++||
T Consensus 85 ~~~~q~~~~~~~-~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 85 AYLGHLPGLKAD-LSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred EEeecCcccccC-CcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 899998754332 3899998775432221 123456788999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED 234 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~ 234 (263)
|||||++||+.+++.+.+.|+++.++ |.|+|++|||++++ ++||++++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRG--GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999998643 57999999999998 58999999864
No 228
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-48 Score=361.39 Aligned_cols=204 Identities=28% Similarity=0.424 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
+.++++||+|+|++ +++|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++++
T Consensus 7 ~ll~~~~i~K~Fgg-----V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 7 PLLELRGISKSFGG-----VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred ceeeeecceEEcCC-----ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHH
Confidence 47999999999987 46999999999999999999999999999999999999999999999863
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCCC----CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
|+.|+|+..+.+.+ ||.+|+.++..... ++.+...+++.++|+.+++....+.++.+||.||||.|+|||||
T Consensus 82 ~~GI~~V~QEl~L~p~L-sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 82 AAGIATVHQELSLVPNL-SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred hCCcEEEeechhccCCc-cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence 78999998866655 99999988754322 45677888999999999996448899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
..++++||||||||+|+....+.++++++++.+ +|.+||+|||.++++ ++||||.||+||+.+.+.+.
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999964 489999999999997 78999999999999998883
No 229
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.7e-48 Score=328.27 Aligned_cols=189 Identities=24% Similarity=0.337 Sum_probs=163.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~ 75 (204)
T PRK13538 1 MLEARNLACERDER-----ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75 (204)
T ss_pred CeEEEEEEEEECCE-----EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhh
Confidence 58999999999753 599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..... .|+.+|+.++....+. ...+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++
T Consensus 76 ~~~~~~~~~~~~~-~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 76 LLYLGHQPGIKTE-LTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred eEEeCCccccCcC-CcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 7899998753322 3999999876432221 22456778999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYM 232 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l 232 (263)
||||||++||+.++..+.+.|+++.++ +.|||++||+++++. ..+|++++
T Consensus 152 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHAEQ--GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998643 579999999999985 55677766
No 230
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-47 Score=336.62 Aligned_cols=207 Identities=30% Similarity=0.425 Sum_probs=177.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++
T Consensus 15 ~~l~~~~l~~~~~~~-----~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYGGY-----QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEECCe-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 479999999999753 599999999999999999999999999999999999875 799998842
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCCh-HHHHHHHHHHHHHcCCC----cccCCCCCCCChHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH-DEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqk 164 (263)
.++|++|++..+ .. |+.+|+.++....+... ...++++.++++.+++. +..++++.+||+||+
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~-~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPF-PK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cccCHHHHhccEEEEccCCcCC-cc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 378999997643 23 99999987643222222 22345677788888773 456888999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|+.
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN---KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999853 47999999999998 58999999999999999999
Q ss_pred hhHHh
Q 024738 244 VSILN 248 (263)
Q Consensus 244 ~~~~~ 248 (263)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 88865
No 231
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.2e-47 Score=333.65 Aligned_cols=206 Identities=28% Similarity=0.346 Sum_probs=168.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~----------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 ~i~~~nl~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (248)
T PRK09580 1 MLSIKDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75 (248)
T ss_pred CeEEEEEEEEeCCe-----eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHH
Confidence 48999999999753 5999999999999999999999999999999999995 69999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccC---C-C---CChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGN---L-N---LTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQKQRV 167 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~---~-~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv 167 (263)
.++|++|++..+... +..+++.+.... . . ....+..+.+.++++.+++. +..++++. +||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 76 AGEGIFMAFQYPVEIPGV-SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred hhcceEEEecCchhccch-hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 278999987533222 443433221111 0 0 11123345677889999995 56677775 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChhh
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~~ 245 (263)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ .+.|||++|||++++. . ||++++|++|+++..|+++.
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999854 2579999999999985 4 89999999999999998875
Q ss_pred H
Q 024738 246 I 246 (263)
Q Consensus 246 ~ 246 (263)
+
T Consensus 233 ~ 233 (248)
T PRK09580 233 V 233 (248)
T ss_pred H
Confidence 4
No 232
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=372.03 Aligned_cols=204 Identities=30% Similarity=0.477 Sum_probs=173.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|+++. .++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 341 ~i~~~~vsf~y~~~~---~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGKE---VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCCCC---CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 599999999997531 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|+++|+.++... ..+.++ +.++++.+++ +........+||||||||++
T Consensus 418 ~i~~v~Q~~~--lf~~Ti~~Ni~~~~~~-~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 418 QVALVSQNVH--LFNDTIANNIAYARTE-QYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hceEEccCce--eecchHHHHHhcCCCC-CCCHHH----HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 4799999985 3446999999886321 123333 3344444443 33344445789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~---~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999998742 479999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 568 ~ 568 (582)
T PRK11176 568 Q 568 (582)
T ss_pred C
Confidence 5
No 233
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-48 Score=370.58 Aligned_cols=213 Identities=19% Similarity=0.300 Sum_probs=179.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEcC----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVKR---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~~---------- 99 (263)
.++|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 257 ~~~l~~~~l~~~~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 257 EVILEVRNLTAWDPVNP--HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CceEEEecCcccccccc--ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 35899999999995210 1359999999999999999999999999999999999998 5999999854
Q ss_pred ----ceEEEecCCC--CcccccCHHHHHHhhcc--CCC---CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ----PKSFVFQNPD--HQVVMPTVEADVAFGLG--NLN---LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ----~~~~v~q~~~--~~~~~~tv~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++. ..+...|+.+|+.++.. ... ....+.++++.++++.+++. +..++++.+|||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 2799999863 12222399999876531 111 12333456788999999996 578999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.+++.++++|.+++++ |.|||++|||++++ ++||++++|++|+++..++++++
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999998653 68999999999998 58999999999999999988776
Q ss_pred H
Q 024738 247 L 247 (263)
Q Consensus 247 ~ 247 (263)
.
T Consensus 493 ~ 493 (506)
T PRK13549 493 T 493 (506)
T ss_pred C
Confidence 3
No 234
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-48 Score=313.72 Aligned_cols=218 Identities=33% Similarity=0.438 Sum_probs=193.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|.++|+++.||.+ ++|.|++|+.+.||.+.++||||||||||+|.+.=+.-|.+|+..+.+
T Consensus 2 sirv~~in~~yg~~-----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~ 76 (242)
T COG4161 2 SIQLNGINCFYGAH-----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred ceEEcccccccccc-----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHH
Confidence 48999999999875 599999999999999999999999999999999999999999998732
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHh-hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAF-GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.+|+|||...+.+.+ ||.+|+.- +.+..++++++...++.++++++.|.++.|+.|-.|||||+|||+||||
T Consensus 77 i~~lr~~vgmvfqqy~lwphl-tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiara 155 (242)
T COG4161 77 IRDLRRNVGMVFQQYNLWPHL-TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHHhhhhhhhhhccCchh-HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHH
Confidence 479999987655554 89999754 3455678888888999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
|+.+|++|++||||++|||+-..++.++|++++. .|+|-++|||..+.++ .|.+|++|++|+|++.|+.+-+.++..
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~--tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~t 233 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQT 233 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh--cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccH
Confidence 9999999999999999999999999999999964 4799999999999984 799999999999999999877665543
Q ss_pred hhhhhhh
Q 024738 252 SRQSSYI 258 (263)
Q Consensus 252 ~~~~~~~ 258 (263)
+.-..|+
T Consensus 234 e~f~~yl 240 (242)
T COG4161 234 EAFKNYL 240 (242)
T ss_pred HHHHHHh
Confidence 3333343
No 235
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.4e-47 Score=336.74 Aligned_cols=200 Identities=28% Similarity=0.414 Sum_probs=172.0
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ce
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PK 101 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~ 101 (263)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+++ .+
T Consensus 2 ~~~~l~~~---------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i 71 (248)
T PRK03695 2 QLNDVAVS---------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHR 71 (248)
T ss_pred cccccchh---------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhhe
Confidence 56788774 17999999999999999999999999999999999985 599999865 27
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh------
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE------ 175 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------ 175 (263)
+|++|++...+. .|+.+|+.++... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 72 ~~v~q~~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 72 AYLSQQQTPPFA-MPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred EEecccCccCCC-ccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 899998754333 4999999875322 22233445678899999999988899999999999999999999997
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 176 -ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 176 -~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|++|||||||+|||+.++..+.++|+++.++ +.|||++||+++++ ++||++++|++|++++.|+++++.+
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ--GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 67999999999999999999999999998643 68999999999987 6899999999999999999888754
No 236
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.4e-47 Score=379.93 Aligned_cols=200 Identities=32% Similarity=0.486 Sum_probs=172.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|++.. .++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 451 ~I~~~nvsf~Y~~~~---~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG---PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCC---ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 699999999996431 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|++||+.++.. .+. +++.++++..++.+. .......||||||||++
T Consensus 528 ~i~~v~Q~~~--lf~gTI~eNi~~~~~---~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 528 QLGVVLQNGR--LMSGSIFENIAGGAP---LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred ccEEEccCCc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 4899999985 345699999988632 333 334455666655433 33345689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|+++ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL-----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-----CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999875 259999999999999999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 674 ~ 674 (686)
T TIGR03797 674 R 674 (686)
T ss_pred C
Confidence 4
No 237
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.1e-47 Score=332.45 Aligned_cols=198 Identities=31% Similarity=0.488 Sum_probs=168.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
..+|+++|++++|+++. ..++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 9 ~~~l~~~~l~~~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP--DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CceEEEEEEEEEeCCCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34899999999997531 12599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR-----SKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++.. +..|+.+|+.++.... ...+.. ..+.++++.+ |+...+++++.+||||||||++||
T Consensus 87 ~~~i~~~~q~~~l--~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 87 HSKVSLVGQEPVL--FARSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HhhEEEEecccHH--HhhhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 37999999753 2349999998754321 111111 1245678888 788888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++++..||++++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPE---RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999743 3799999999999877999999999874
No 238
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.3e-47 Score=371.65 Aligned_cols=204 Identities=30% Similarity=0.476 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|+|+++. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 337 ~~i~~~~v~f~y~~~~---~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYPDQP---QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred CeEEEEEEEEECCCCC---CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 3699999999997531 3699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCC----------CCCCCChHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR----------PVQTLSGGQKQRVA 168 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|+++|+.++.. ..+ ++.+.++++.+++.++.++ ....||||||||++
T Consensus 414 ~~i~~v~Q~~~--lf~~ti~~Ni~~~~~--~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 414 QAISVVSQRVH--LFSATLRDNLLLAAP--NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred hheeEEcccch--hhcccHHHHhhcCCC--ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 4899999985 344599999988632 122 3456677888888766544 55789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~---~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999874 2579999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 563 ~ 563 (574)
T PRK11160 563 Q 563 (574)
T ss_pred c
Confidence 5
No 239
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-47 Score=329.27 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=164.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 2 DIEFKNVSLRYRPNL---PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred cEEEEEEEEecCCCC---cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 378999999997421 3599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++.. +..|+.+|+.+... ... +++.++++.+++.+. .++++.+||+||+||++
T Consensus 79 ~i~~~~q~~~l--~~~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 79 RISIIPQDPVL--FSGTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred hEEEECCCCcc--ccchHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 37999999863 23499999864321 121 234445555555443 35689999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++..||++++|++|++++.|+
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFK---DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999998742 469999999999987799999999999988775
No 240
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.1e-47 Score=339.36 Aligned_cols=201 Identities=25% Similarity=0.312 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|.+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++++
T Consensus 2 ~i~~~nls~~~~~~~---~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGG---NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCCC---CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhh
Confidence 488999999995321 359999999999999999999999999999999999997 789999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCC-----------CChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT-----------LSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv~ 168 (263)
.++|+||++..+ ..|+++|+.... ... .+++.++++.+||.++.++++.. ||+|||||++
T Consensus 78 ~i~~v~q~~~lf--~~tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 78 AFGVIPQKVFIF--SGTFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred hEEEECCCcccc--hhhHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 489999998643 349999985321 122 23456788899998888888876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~---~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF---ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999999999999999999863 2589999999999887799999999999999999999887
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 4
No 241
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=368.26 Aligned_cols=206 Identities=19% Similarity=0.286 Sum_probs=174.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 263 ~~~l~~~~l~~~~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 263 ETVFEVRNVTSRDR-------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred CcEEEEeCccccCC-------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 35899999998763 289999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhccCC--------CC-ChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGLGNL--------NL-THDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk 164 (263)
.++|+||++. ..+...|+.+|+.++.... +. .....++++.++++.+++. +..++++.+||||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence 3799999842 1222238999987653210 11 1223345678899999997 788999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|||++|||++++ .+||++++|++|+++..++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD--GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999998643 68999999999997 58999999999999988866
Q ss_pred hh
Q 024738 244 VS 245 (263)
Q Consensus 244 ~~ 245 (263)
.+
T Consensus 494 ~~ 495 (510)
T PRK09700 494 RD 495 (510)
T ss_pred cc
Confidence 33
No 242
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-48 Score=358.30 Aligned_cols=203 Identities=29% Similarity=0.432 Sum_probs=178.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|++++ .++|+|+||++++||.+||+|++|||||||+.+|+|.++|++|+|.+++
T Consensus 336 ~l~~~~vsF~y~~~~---~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQQ---TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCCc---cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 799999999998764 4799999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++++.|.+. .|..|+++|+.++.. +.+.+ .+.++++.+||+++ ++.-...|||||+||++
T Consensus 413 ~i~vl~Qr~h--lF~~Tlr~NL~lA~~--~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 413 TISVLTQRVH--LFSGTLRDNLRLANP--DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHhhhccchH--HHHHHHHHHHhhcCC--CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 3788999875 456699999998643 23433 44556666666543 34446799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+|+++.+++||||||.|||+.+.+++++.|.+.++ |+|+|||||++..++.||+|++|++|+++++|++.+++.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999998753 579999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
+
T Consensus 562 ~ 562 (573)
T COG4987 562 N 562 (573)
T ss_pred c
Confidence 4
No 243
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-47 Score=332.73 Aligned_cols=207 Identities=28% Similarity=0.467 Sum_probs=177.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~-------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 3 ~l~~~~v~~~~~~~-----~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDA-----HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeCCe-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 68999999999753 59999999999999999999999999999999999864 4899998754
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ ..|+.+|+.++....+. ..+...+++.++++.+++. ..+++++.+||+|||||+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPF--PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred cHHHHhhheEEEecCCccC--cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 379999997543 24999999876432222 2234456778889999884 356888999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ ..||++++|++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 2 47999999999997 57999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 654
No 244
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.3e-47 Score=378.90 Aligned_cols=203 Identities=32% Similarity=0.495 Sum_probs=174.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 463 ~I~~~~vsf~Y~~~~---~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE---TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred eEEEEEEEEEeCCCC---ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 599999999997431 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|++||+.++.. ..+.++ +.++++..+ ++.........||||||||++
T Consensus 540 ~i~~v~Q~~~--lf~~TI~eNi~~~~~--~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 540 NIGYVPQDPR--LFYGTLRDNIALGAP--YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred ccEEECCChh--hhhhhHHHHHhCCCC--CCCHHH----HHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5899999985 345699999988632 233333 334444444 344444556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA---GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999998753 579999999999999999999999999999999999886
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 5
No 245
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-47 Score=359.00 Aligned_cols=202 Identities=34% Similarity=0.523 Sum_probs=175.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++.+|+++.|+++ .++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 320 ei~~~~l~~~y~~g----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 320 EISLENLSFRYPDG----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeeecceEEecCCC----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 46667999999874 2699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCC----------CCCCCChHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR----------PVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~l 169 (263)
+++||+|+|. .+..|++||+.++-. ..++ +.+.++++..++.++.++ ....|||||+|||++
T Consensus 396 ~i~~v~Q~p~--lf~gTireNi~l~~~--~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaL 467 (559)
T COG4988 396 QISWVSQNPY--LFAGTIRENILLARP--DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLAL 467 (559)
T ss_pred HeeeeCCCCc--cccccHHHHhhccCC--cCCH----HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHH
Confidence 5899999985 455699999998632 2333 345566666666544433 345699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+++++++|+||||++||.++.+.+.+.|.++++ ++|+|++||+++.+..||+|++|++|++++.|.++++.+.
T Consensus 468 ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999999999999999865 3699999999999999999999999999999999999765
No 246
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.8e-47 Score=369.49 Aligned_cols=206 Identities=34% Similarity=0.531 Sum_probs=178.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++|+|+++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|
T Consensus 328 ~I~f~~vsf~y~~~----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 328 SIEFENVSFSYPGK----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred eEEEEEEEEEcCCC----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 59999999999842 3699999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH-----HHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-----LDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
++++|+|++.. +..|+++|+.++... .+.++..+.++.+ ++.+ |++.........||||||||++||||
T Consensus 404 ~I~~V~Qd~~L--F~~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 404 RIGIVSQDPLL--FSGTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred hccEEccccee--ecccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 48999999853 446999999998543 4455554444332 4444 56666667778999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++|++||||||||+||+.+...+.+.+.++.+ ++|+|+|+|++..++.||+|++|++|++++.|+++++++.
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~---~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLK---GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc---CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999997752 4699999999999988999999999999999999999886
No 247
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.2e-47 Score=324.49 Aligned_cols=185 Identities=29% Similarity=0.428 Sum_probs=161.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++||+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 l~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (201)
T cd03231 1 LEADELTCERDGR-----ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75 (201)
T ss_pred CEEEEEEEEeCCc-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhhe
Confidence 4789999999763 589999999999999999999999999999999999999999999864 47
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++.... ..|+.+|+.+.... . ..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~q~~~~~~-~~tv~e~l~~~~~~--~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 76 LYLGHAPGIKT-TLSVLENLRFWHAD--H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred EEeccccccCC-CcCHHHHHHhhccc--c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999875433 34999999875321 1 23567789999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYM 232 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l 232 (263)
|||||+|||+.+++.+.+.|+++.++ |.|+|++||+...+ .+|++++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCAR--GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999987543 67999999998876 689999876
No 248
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3e-47 Score=324.98 Aligned_cols=196 Identities=29% Similarity=0.426 Sum_probs=157.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
|+++||+++|+++.....++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.++|++|++..+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-- 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-- 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc--
Confidence 578999999975310002599999999999999999999999999999999999999999999999999999998643
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
..|+.+|+.+.... ..+...+.. .+.+..+ +++...++++.+||+|||||++|||||+.+|+++||||||
T Consensus 79 ~~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 79 NGTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred cCcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 34999999875321 111111111 1122222 3444567788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 187 TFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 187 s~LD~~~~~~l~~~-l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
++||+.+++.+.+. ++++.+ ++.|||++||+++.+..||++++|++|+
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~--~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLL--NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhcc--CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999884 565543 2689999999999986699999999985
No 249
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.8e-47 Score=377.46 Aligned_cols=201 Identities=26% Similarity=0.401 Sum_probs=171.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 477 ~I~~~~vsf~y~~~~---~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 477 YVELRNITFGYSPLE---PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred eEEEEEEEEecCCCC---CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHh
Confidence 699999999997532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|+++|+.++.. ..+.++ +.++++..+ ++.........||||||||++
T Consensus 554 ~i~~v~Q~~~--lf~gTi~eNi~l~~~--~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia 625 (710)
T TIGR03796 554 SVAMVDQDIF--LFEGTVRDNLTLWDP--TIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE 625 (710)
T ss_pred heeEEecCCh--hhhccHHHHhhCCCC--CCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH
Confidence 5899999985 345699999987522 233333 333444444 444444556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|++ .++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 626 LARall~~p~iliLDEptS~LD~~te~~i~~~l~~-----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 626 IARALVRNPSILILDEATSALDPETEKIIDDNLRR-----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999875 1579999999999998999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 701 ~ 701 (710)
T TIGR03796 701 V 701 (710)
T ss_pred c
Confidence 4
No 250
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.6e-47 Score=368.65 Aligned_cols=201 Identities=29% Similarity=0.424 Sum_probs=173.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 340 ~i~~~~v~f~y~~~----~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 340 RIDIDNVSFAYRDD----NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred eEEEEEEEEEeCCC----CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHh
Confidence 59999999999742 2699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++. .+..|+++|+.++. ..+.+ ++.++++.+|+.+ ........||||||||++
T Consensus 416 ~i~~v~Q~~~--lF~~Ti~~NI~~~~---~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 416 GVAMVQQDPV--VLADTFLANVTLGR---DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred heEEEccCCc--cccchHHHHHHhCC---CCCHH----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 4899999985 34459999999863 23333 3445555555443 333455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~---~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE---HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998743 479999999999999999999999999999999999886
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 564 ~ 564 (592)
T PRK10790 564 A 564 (592)
T ss_pred C
Confidence 4
No 251
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.6e-47 Score=324.38 Aligned_cols=189 Identities=28% Similarity=0.373 Sum_probs=163.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
+|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++
T Consensus 2 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR-----VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe-----EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcE
Confidence 79999999999753 599999999999999999999999999999999999999999999875 368
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++.... ..|+.+|+.+.....+.. .+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 77 ~~~~~~~~~~-~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 77 YLGHRNAMKP-ALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred EecCCCcCCC-CCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9988764322 249999987653322211 23477899999998888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
||||+|||+.++..+++.|+++.++ |.|||++||+.+++.. |+++.+..
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 152 DEPTAALDAAAVALFAELIRAHLAQ--GGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999997543 6899999999999866 99887754
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=339.89 Aligned_cols=209 Identities=26% Similarity=0.429 Sum_probs=177.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
..+|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 43 ~~~l~i~nl~~~~~~~-----~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD-----HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CceEEEEEEEEEeCCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3479999999999753 59999999999999999999999999999999999986 6899999853
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCC------------CCC-hHHHHHHHHHHHHHcCCC----cccC
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNL------------NLT-HDEVRSKVAKALDAVGMS----NYLQ 153 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~~~~ 153 (263)
.++|++|++..+. .|+.+|+.++.... +.. .....+.+.++++.+++. ...+
T Consensus 118 ~~~~~~~~~~i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 195 (305)
T PRK14264 118 GVNLVELRKRVGMVFQSPNPFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195 (305)
T ss_pred cccHHHHhhceEEEccCCcccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc
Confidence 3789999975332 39999998753211 111 122345678889999884 4568
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEE-EE
Q 024738 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGA-FY 231 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v-~~ 231 (263)
+++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+ .+||++ ++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhcCEEEEE
Confidence 89999999999999999999999999999999999999999999999999854 26999999999997 579997 57
Q ss_pred EeCCEEEEecChhhHHhh
Q 024738 232 MEDGKIVMQADGVSILNF 249 (263)
Q Consensus 232 l~~G~i~~~g~~~~~~~~ 249 (263)
|++|++++.|+++++++.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 899999999999888754
No 253
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-47 Score=365.41 Aligned_cols=205 Identities=24% Similarity=0.313 Sum_probs=173.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~ 110 (263)
||+++|++++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|++..
T Consensus 1 ml~i~~ls~~~~~~-----~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~ 75 (530)
T PRK15064 1 MLSTANITMQFGAK-----PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFA 75 (530)
T ss_pred CEEEEEEEEEeCCc-----EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCc
Confidence 58999999999753 599999999999999999999999999999999999999999999974 58999998754
Q ss_pred cccccCHHHHHHhhccC-----------CCC---------------------ChHHHHHHHHHHHHHcCCCcc-cCCCCC
Q 024738 111 QVVMPTVEADVAFGLGN-----------LNL---------------------THDEVRSKVAKALDAVGMSNY-LQRPVQ 157 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~~l~~~~l~~~-~~~~~~ 157 (263)
+. ..|+.+|+.++... ... ...+.++++.++++.+|+.+. .++++.
T Consensus 76 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 154 (530)
T PRK15064 76 FE-EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS 154 (530)
T ss_pred CC-CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh
Confidence 33 33899998764210 000 001223567789999999864 467899
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCE
Q 024738 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236 (263)
Q Consensus 158 ~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~ 236 (263)
+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+||||++++ +.||++++|++|+
T Consensus 155 ~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-----RNSTMIIISHDRHFLNSVCTHMADLDYGE 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhhcceEEEEeCCE
Confidence 9999999999999999999999999999999999999999999864 257999999999998 5899999999999
Q ss_pred E-EEecChhhHHh
Q 024738 237 I-VMQADGVSILN 248 (263)
Q Consensus 237 i-~~~g~~~~~~~ 248 (263)
+ ++.|+++++.+
T Consensus 230 i~~~~g~~~~~~~ 242 (530)
T PRK15064 230 LRVYPGNYDEYMT 242 (530)
T ss_pred EEEecCCHHHHHH
Confidence 9 47888887754
No 254
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=321.42 Aligned_cols=183 Identities=26% Similarity=0.396 Sum_probs=154.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~---------- 99 (263)
.+.++||+|.|+++. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 689999999997642 23579999999999999999999999999999999999999 8999999854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..++. .|+.+|+.++... . .++++.+||+||+||++|||||+.+|
T Consensus 82 ~~~i~~~~q~~~~~~~-~tv~~~l~~~~~~--------~---------------~~~~~~~LS~Ge~qrl~laral~~~p 137 (202)
T cd03233 82 PGEIIYVSEEDVHFPT-LTVRETLDFALRC--------K---------------GNEFVRGISGGERKRVSIAEALVSRA 137 (202)
T ss_pred cceEEEEecccccCCC-CcHHHHHhhhhhh--------c---------------cccchhhCCHHHHHHHHHHHHHhhCC
Confidence 37899998753332 3999998764210 0 56788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEE-ccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV-THRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiiv-tH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
++|||||||++||+.+++.+++.|++++++. +.|+|++ +|+.+++ +.||++++|++|+++..|
T Consensus 138 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRTMADVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999986532 4565555 5556776 689999999999998654
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-47 Score=331.01 Aligned_cols=195 Identities=32% Similarity=0.448 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEECCCc--cc--cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecC
Q 024738 32 VAIECSNLNYSITKKQ--RK--LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN 107 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~--~~--~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~ 107 (263)
++++++||++.|..+. .. ...+++||||+|++||++||+|+||||||||-|+|+||++|++|+|+|+++-.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i----- 77 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI----- 77 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-----
Confidence 4799999999996532 11 14799999999999999999999999999999999999999999999987420
Q ss_pred CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
..+ + .++..+++.++|+.+|+. +.++++|++|||||+||++|||||+.+|+++++|||+
T Consensus 78 ----~~~-~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 78 ----TKL-S---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred ----hhc-c---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 001 1 344567789999999997 5899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
|+||...+.+++++|.++.++ .|.|.+++|||+..++ +|||+.+|..|++++.|+.++++.+..+
T Consensus 138 SaLDvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 138 SALDVSVQAQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred hhcchhHHHHHHHHHHHHHHH-hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999764 5799999999999996 6999999999999999999999885433
No 256
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.7e-47 Score=321.44 Aligned_cols=186 Identities=27% Similarity=0.424 Sum_probs=161.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
||+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ .
T Consensus 1 ml~~~~l~~~~~~~-----~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (200)
T PRK13540 1 MLDVIELDFDYHDQ-----PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75 (200)
T ss_pred CEEEEEEEEEeCCe-----eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhh
Confidence 48999999999753 599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++...+ ..|+.+|+.++.... .. ...+.++++.+++.+..++++.+||+||+||++||||++.+|++|
T Consensus 76 i~~~~q~~~~~~-~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 76 LCFVGHRSGINP-YLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eEEeccccccCc-CCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 789999875332 349999988753211 11 245778999999988888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~ 231 (263)
||||||++||+.+++.+.+.|+++.+ .+.|||++||+.+.+..||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRA--KGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHH--cCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999754 36799999999999988887553
No 257
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-46 Score=319.77 Aligned_cols=189 Identities=25% Similarity=0.360 Sum_probs=161.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~l~~~~l~~~~~~~~---~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 6 EIEVENLSVRYAPDL---PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred eEEEEEEEEEeCCCC---cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 699999999997521 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++.. +..|+.+|+.+.. .... +.+.++++ +++++.+|||||+||++|||||+.+|++
T Consensus 83 ~i~~v~q~~~~--~~~tv~~~l~~~~---~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~l 146 (207)
T cd03369 83 SLTIIPQDPTL--FSGTIRSNLDPFD---EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRV 146 (207)
T ss_pred hEEEEecCCcc--cCccHHHHhcccC---CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 48999999853 2349999986532 1121 22333333 4678999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
+||||||++||+.++..+++.|+++. + +.|+|++||+++++..||++++|++|++++.|++
T Consensus 147 lllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 147 LVLDEATASIDYATDALIQKTIREEF-T--NSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999973 2 5799999999999866999999999999887753
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.3e-46 Score=374.26 Aligned_cols=202 Identities=31% Similarity=0.487 Sum_probs=169.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. ..++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 478 ~I~~~nVsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP--DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 599999999997531 13699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|+|. .+..|++||+.++... .+.+ ++.++++..++. ........+||||||||++
T Consensus 556 ~i~~v~Q~~~--lF~gTIreNI~~g~~~--~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRla 627 (711)
T TIGR00958 556 QVALVGQEPV--LFSGSVRENIAYGLTD--TPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIA 627 (711)
T ss_pred hceEEecCcc--ccccCHHHHHhcCCCC--CCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHH
Confidence 4899999985 3456999999987432 2333 344455555443 3344455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++++|++||||||||+||+.+...+.+ .. . .+++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 628 lARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~---~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 628 IARALVRKPRVLILDEATSALDAECEQLLQE-SR-S---RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c---cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999999999998887 22 1 23579999999999998999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 703 ~ 703 (711)
T TIGR00958 703 D 703 (711)
T ss_pred C
Confidence 4
No 259
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5e-47 Score=320.18 Aligned_cols=169 Identities=43% Similarity=0.648 Sum_probs=147.7
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------ceEEEecCCCCcccccC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------------PKSFVFQNPDHQVVMPT 116 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------------~~~~v~q~~~~~~~~~t 116 (263)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++....+..|
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 699999999999999999999999999999999999999999998854 37899998742223349
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 024738 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196 (263)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~ 196 (263)
+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 99999876433334444555678889999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 197 VIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 197 l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
+.+.|+++.++ |.|||++||++++
T Consensus 166 ~~~~l~~~~~~--~~tili~sH~~~~ 189 (190)
T TIGR01166 166 MLAILRRLRAE--GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHc--CCEEEEEeecccc
Confidence 99999998643 6899999999875
No 260
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-46 Score=373.24 Aligned_cols=202 Identities=29% Similarity=0.442 Sum_probs=172.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+.. .++|+|+||+|++|+.+||+||||||||||+|+|+|+++|++|+|++++
T Consensus 473 ~I~~~~vsf~y~~~----~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 473 DIVINDVSYSYGYG----SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred cEEEEEEEEEcCCC----CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 69999999999742 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|++||+.++.. ...+.++ +.++++..+ ++.........||||||||++
T Consensus 549 ~i~~v~Q~~~--lf~gTI~eNi~l~~~-~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 549 FINYLPQEPY--IFSGSILENLLLGAK-ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred heEEEecCce--ehhHHHHHHHhccCC-CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 4899999985 345599999998632 1233333 333444433 344445566789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|+++ + ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~--~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--Q--DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--c--CCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999874 2 479999999999999999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 698 ~ 698 (708)
T TIGR01193 698 R 698 (708)
T ss_pred c
Confidence 4
No 261
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.5e-46 Score=330.38 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=171.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++|++++|++.. ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++++
T Consensus 18 ~~i~~~~l~~~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 18 GEIKIHDLCVRYENNL---KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred ceEEEEEEEEEeCCCC---CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 4799999999997521 2599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|++|++.. +..|+.+|+..... .......+ .+.++++.+ +++...+.++.+||+||+||++|||
T Consensus 95 ~~i~~v~q~~~l--~~~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 95 SRLSIILQDPIL--FSGSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred hhEEEECCCCcc--cccHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 37999999853 23488888754211 11111111 123445555 6666677788999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|++|||||||+|||+.++..+.+.++++. + +.|||++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~--~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAF-A--DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C--CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999999999863 2 5799999999999877999999999999999999888654
No 262
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-46 Score=365.78 Aligned_cols=206 Identities=28% Similarity=0.330 Sum_probs=173.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc--CceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--RPKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~--~~~~~v~q~~~ 109 (263)
++|+++||+++|+++ .++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++ ..++|++|++.
T Consensus 5 ~~l~i~~l~~~y~~~----~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 80 (556)
T PRK11819 5 YIYTMNRVSKVVPPK----KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ 80 (556)
T ss_pred EEEEEeeEEEEeCCC----CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 589999999999721 269999999999999999999999999999999999999999999986 36999999986
Q ss_pred CcccccCHHHHHHhhccC--------------CCCCh----------------------HHHHHHHHHHHHHcCCCcccC
Q 024738 110 HQVVMPTVEADVAFGLGN--------------LNLTH----------------------DEVRSKVAKALDAVGMSNYLQ 153 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~--------------~~~~~----------------------~~~~~~~~~~l~~~~l~~~~~ 153 (263)
.... .|+.+|+.++... ..... .+..+++.++++.+|+.. .+
T Consensus 81 ~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 81 LDPE-KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCC-CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 4332 3999998764210 00000 012346778899999964 78
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEE
Q 024738 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYM 232 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l 232 (263)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++. .||++++|
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-----~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-----GTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhhcCeEEEE
Confidence 9999999999999999999999999999999999999999999999998861 39999999999984 79999999
Q ss_pred eCCEEE-EecChhhHHh
Q 024738 233 EDGKIV-MQADGVSILN 248 (263)
Q Consensus 233 ~~G~i~-~~g~~~~~~~ 248 (263)
++|+++ +.|+.+++.+
T Consensus 234 ~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999986 7788776543
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.4e-46 Score=398.57 Aligned_cols=213 Identities=22% Similarity=0.258 Sum_probs=189.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
..+|+++||+|+|+++. +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~---~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTS---SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCC---ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHh
Confidence 35899999999997521 3699999999999999999999999999999999999999999999965
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+||+||++.....+ |++|++.+....++...++.++.+.++++.++|.++.++++++||||||||++||+||+.+|+
T Consensus 2012 ~~IGy~pQ~~~L~~~L-Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLL-TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhEEEEeccccCCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 389999987654444 999999876544455555556778889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.+++.+++.|+++.++ |+|||++||++++++ +|||+++|++|+++..|++.++.+.
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~--g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIRE--GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999998643 689999999999985 7999999999999999999988654
No 264
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.7e-47 Score=361.95 Aligned_cols=210 Identities=21% Similarity=0.303 Sum_probs=175.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR----------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~----------- 99 (263)
++|+++|++++|+.+. ...+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 256 ~~l~~~~l~~~~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 256 VILEARNLTCWDVINP--HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred ceEEEeCCcccccccc--cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 4899999999994210 12599999999999999999999999999999999999985 899999854
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhcc--CC---CCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGLG--NL---NLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++. ..+...|+.+|+.++.. .. .....+.++++.++++.+++.. ..++++.+|||||||||+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 3799999863 12222389999877531 11 1122334566888999999974 689999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++ ++||++++|++|+++...+..+
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999998653 67999999999998 5899999999999998886544
No 265
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.8e-47 Score=318.07 Aligned_cols=179 Identities=38% Similarity=0.606 Sum_probs=150.5
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccc
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVM 114 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~ 114 (263)
+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.- +.+. ..
T Consensus 1 ~~~~l~~~~~~~-----~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~~-----~~ 68 (180)
T cd03214 1 EVENLSVGYGGR-----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LASL-----SP 68 (180)
T ss_pred CeeEEEEEECCe-----eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCcC-----CH
Confidence 478999999753 59999999999999999999999999999999999999999999998631 1110 00
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
......+.+. .++++.+++.+..++++.+||+||+||++|||||+.+|+++||||||++||+.++
T Consensus 69 ~~~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 69 KELARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 0111112111 1188899999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
+.+.+.|.++.++ .+.|+|++||+++++ +.||++++|++|++++.|
T Consensus 134 ~~~~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARE-RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999998643 257999999999997 689999999999987653
No 266
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.4e-46 Score=331.98 Aligned_cols=200 Identities=24% Similarity=0.378 Sum_probs=165.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
...|+++|+++. + .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.++|++|++..
T Consensus 37 ~~~l~i~nls~~-~------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 37 DNNLFFSNLCLV-G------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCeEEEEEEEEe-c------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 457999999985 2 259999999999999999999999999999999999999999999999999999999753
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
+ ..|+.+|+.++... ... ++.++++.+++.+ ..++++.+||+|||||++|||||+.+|++
T Consensus 110 ~--~~tv~enl~~~~~~---~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 110 M--PGTIKENIIFGVSY---DEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred c--ccCHHHHhhccccc---CHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 3 24999998864321 111 1122333333322 23455689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAV-KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l-~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.++..+.+.+ .++. + +.|||++||+++.+..||++++|++|++++.|++.++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~-~--~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLM-A--NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhh-C--CCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999998865 4543 2 4799999999999888999999999999999999888753
No 267
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.5e-46 Score=313.15 Aligned_cols=166 Identities=33% Similarity=0.551 Sum_probs=147.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++. .++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++ .+
T Consensus 1 i~~~~~~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQE---QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCC---ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhE
Confidence 47899999997531 2599999999999999999999999999999999999999999999875 27
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+ ..|+.+|+ +.+||+||+||++||||++.+|++||
T Consensus 78 ~~~~q~~~~~--~~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 78 SVLNQRPYLF--DTTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EEEccCCeee--cccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999987432 23777765 78999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
|||||++||+.+++.+++.|+++. + +.|||++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVL-K--DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999873 2 57999999999998889999999999998654
No 268
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.5e-46 Score=362.77 Aligned_cols=206 Identities=28% Similarity=0.471 Sum_probs=171.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|+++ .++|+|+||++++|++++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 334 ~I~~~~vsf~y~~~----~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 334 AVEFDDVSFSYDNS----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred eEEEEEEEEEeCCC----CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 59999999999743 2599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+++|+.++.. ..+.++..+.+. +.++.+ |++.........||||||||++||||
T Consensus 410 ~i~~v~Q~~~--lf~~Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 410 NIAVVFQDAG--LFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred heEEEecCcc--cccccHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 5899999985 345599999988632 233333322211 122222 34444444566899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|+++|||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.++.||++++|++|++++.|+++++++.
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~---~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELMK---GRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9999999999999999999999999999988642 5799999999999999999999999999999999998754
No 269
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.4e-46 Score=363.77 Aligned_cols=204 Identities=29% Similarity=0.464 Sum_probs=173.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++.. .++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 330 ~i~~~~v~f~y~~~~---~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD---RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred eEEEEEEEEEcCCCC---CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 599999999996532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|+|. .+..|+++|+.++.. ...+. +++.++++.+|+.+. .......||||||||++
T Consensus 407 ~i~~v~Q~~~--lf~~Ti~~Ni~~~~~-~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 407 QVALVSQDVV--LFNDTIANNIAYGRT-EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred hceEEccCcc--cccccHHHHHhcCCC-CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 4899999985 345699999987632 12233 334455565555432 33344679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++.+|+++|||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+.+.++.||+|++|++|++++.|+.+++++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~---~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQ---GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC---CCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999998742 479999999999999999999999999999999999876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 557 ~ 557 (571)
T TIGR02203 557 R 557 (571)
T ss_pred c
Confidence 4
No 270
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=359.15 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=175.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 255 ~~~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 255 EVRLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred CcEEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35799999984 279999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhcc-CC----C-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGLG-NL----N-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~~-~~----~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++. ..+...|+.+|+.++.. .. + ....+..+++.++++.+++. +..++++.+|||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH
Confidence 3799999863 12222399999876421 11 1 12233456688999999995 678999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++ .+||++++|++|+++..++++++
T Consensus 405 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE--GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999998643 68999999999997 58999999999999999988776
Q ss_pred H
Q 024738 247 L 247 (263)
Q Consensus 247 ~ 247 (263)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
No 271
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.4e-46 Score=311.95 Aligned_cols=160 Identities=33% Similarity=0.587 Sum_probs=142.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (173)
T cd03246 1 LEVENVSFRYPGAE---PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH 77 (173)
T ss_pred CEEEEEEEEcCCCC---CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhh
Confidence 47899999997521 2599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..+ ..|+.+|+ |||||+||++|||||+.+|++|
T Consensus 78 i~~~~q~~~~~--~~tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 78 VGYLPQDDELF--SGSIAENI-------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred eEEECCCCccc--cCcHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 78999987432 23777765 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
||||||++||+.++..+.+.|+++.+ +|+|||++||++++++.||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA--AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999854 36899999999998888999999999974
No 272
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-46 Score=310.93 Aligned_cols=160 Identities=39% Similarity=0.558 Sum_probs=143.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
++++|++++|++. ++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (173)
T cd03230 1 IEVRNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75 (173)
T ss_pred CEEEEEEEEECCe-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccE
Confidence 4789999999753 599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+. |||||+||++|||||+.+|++||
T Consensus 76 ~~~~q~~~~~~-~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~ill 118 (173)
T cd03230 76 GYLPEEPSLYE-NLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLI 118 (173)
T ss_pred EEEecCCcccc-CCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999875332 238888763 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
|||||++||+.++..+.+.|++++++ |.|+|++||+.+++. .||++++|++|++
T Consensus 119 lDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 119 LDEPTSGLDPESRREFWELLRELKKE--GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999998653 679999999999985 8999999999874
No 273
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-46 Score=377.99 Aligned_cols=209 Identities=35% Similarity=0.501 Sum_probs=178.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|+.+. +.++|+|+||+|++|+.++|+|||||||||++++|.+++.|++|+|+++|
T Consensus 350 ~ief~nV~FsYPsRp--dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP--DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ceEEEEEEecCCCCC--cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 699999999999763 46799999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH-----HHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-----ALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
++|.|+|+|. ++..|++||+.++... .+.++..+.++. .+..+ |++.....+..+||||||||+|||||
T Consensus 428 ~iglV~QePv--lF~~tI~eNI~~G~~d--at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 428 QIGLVSQEPV--LFATTIRENIRYGKPD--ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hcCeeeechh--hhcccHHHHHhcCCCc--ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 4899999995 3556999999998533 334444333221 12221 44555555667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
|+++|++||||||||+||+++++.+.+.|.+.. .|+|.|+|+|++..++.||++++|++|+|++.|+++|+++..
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~---~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKAS---KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhh---cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence 999999999999999999999999999999874 367999999999999999999999999999999999998863
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=360.15 Aligned_cols=203 Identities=23% Similarity=0.297 Sum_probs=175.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.+|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 318 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~ 392 (530)
T PRK15064 318 NALEVENLTKGFDNG-----PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392 (530)
T ss_pred ceEEEEeeEEeeCCc-----eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccc
Confidence 489999999999753 599999999999999999999999999999999999999999999976 6899999864
Q ss_pred Ccc-cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 110 HQV-VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 110 ~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
..+ ...|+.+|+.+... . ....+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 393 ~~~~~~~t~~~~~~~~~~-~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 467 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQ-E----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467 (530)
T ss_pred ccCCCCCcHHHHHHHhcc-C----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 222 22389998764211 1 11235577899999995 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-EecChhhHHhh
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQADGVSILNF 249 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~~~ 249 (263)
+||+.++..+.+.|+++ + .|||+||||++++ .+||++++|++|+++ ..|++.++++.
T Consensus 468 ~LD~~~~~~l~~~l~~~----~-~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 468 HMDMESIESLNMALEKY----E-GTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCHHHHHHHHHHHHHC----C-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999876 2 3999999999998 479999999999998 78888887654
No 275
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.8e-46 Score=322.10 Aligned_cols=188 Identities=35% Similarity=0.445 Sum_probs=161.7
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEEecCCCCcccc-cCHHHHHHhhccC--
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFVFQNPDHQVVM-PTVEADVAFGLGN-- 127 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~-- 127 (263)
|+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++.....+ .|+.+|+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999976 389999997543222 3899998765321
Q ss_pred --CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 128 --LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 128 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
......+.++++.++++.+++++..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 111122334567889999999988999999999999999999999999999999999999999999999999999986
Q ss_pred hcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 206 GDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+ +|.|+|++||+++++ +.||+++++ +|+++..|+++++.+.
T Consensus 161 ~--~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 161 G--AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred H--cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 4 368999999999987 579999999 8999999999887654
No 276
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.4e-46 Score=316.52 Aligned_cols=184 Identities=27% Similarity=0.384 Sum_probs=156.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (198)
T TIGR01189 1 LAARNLACSRGER-----MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI 75 (198)
T ss_pred CEEEEEEEEECCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe
Confidence 5789999999753 599999999999999999999999999999999999999999999865 36
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++.... ..|+.+|+.+...... . + .+++.++++.+++.+..++++.+||||||||++||||++.+|+++|
T Consensus 76 ~~~~q~~~~~~-~~tv~~~l~~~~~~~~--~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 76 LYLGHLPGLKP-ELSALENLHFWAAIHG--G-A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred EEeccCccccc-CCcHHHHHHHHHHHcC--C-c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999865332 2499999877543222 1 1 3456788999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAF 230 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~ 230 (263)
|||||++||+.++..+.+.|.++.++ |.|||++||+...+ .|++++
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLAR--GGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEEcccccc-cceEEe
Confidence 99999999999999999999998543 57999999998543 245554
No 277
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.7e-46 Score=358.07 Aligned_cols=207 Identities=29% Similarity=0.416 Sum_probs=175.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|++.. .++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 316 ~i~~~~v~~~y~~~~---~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPGGK---KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred eEEEEEEEEEcCCCC---ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 699999999996421 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK-----VAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++.. +..|+++|+.++.. ..+.++..+. +.+.++.+ |++.........||||||||++||||
T Consensus 393 ~i~~v~q~~~l--f~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 393 HIGYLPQDVEL--FPGTVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred heEEecCCccc--ccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 48999999853 34599999986432 2333333222 23445555 66666777889999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+++|++|||||||++||+.+++.+.+.|.++.. +++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA--RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999998742 2579999999999888899999999999999999988764
No 278
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.5e-46 Score=360.42 Aligned_cols=206 Identities=28% Similarity=0.350 Sum_probs=172.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.+|+++||+++|++. .++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|++.
T Consensus 3 ~~i~~~nls~~~~~~----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEEeeEEEecCCC----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 489999999999721 2599999999999999999999999999999999999999999999863 6999999986
Q ss_pred CcccccCHHHHHHhhccC--------------CCCChHH----------------------HHHHHHHHHHHcCCCcccC
Q 024738 110 HQVVMPTVEADVAFGLGN--------------LNLTHDE----------------------VRSKVAKALDAVGMSNYLQ 153 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~ 153 (263)
.+.. .|+.+|+.++... ......+ ...++.++++.+++.. .+
T Consensus 79 ~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 156 (552)
T TIGR03719 79 LDPT-KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD 156 (552)
T ss_pred CCCC-CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence 4333 3999998764311 0000010 1235567788888864 68
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEE
Q 024738 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYM 232 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l 232 (263)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ . .|||+||||++++. .||++++|
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~--~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---P--GTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---C--CeEEEEeCCHHHHHhhcCeEEEE
Confidence 899999999999999999999999999999999999999999999999875 1 39999999999985 79999999
Q ss_pred eCCEEE-EecChhhHHh
Q 024738 233 EDGKIV-MQADGVSILN 248 (263)
Q Consensus 233 ~~G~i~-~~g~~~~~~~ 248 (263)
++|+++ ..|+.+++.+
T Consensus 232 ~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLE 248 (552)
T ss_pred ECCEEEEecCCHHHHHH
Confidence 999976 6788876554
No 279
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.3e-46 Score=314.30 Aligned_cols=177 Identities=28% Similarity=0.413 Sum_probs=151.1
Q ss_pred eEEEEeEEEEECCCc-cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQ-RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~-~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~---------- 99 (263)
.|+++||+++|++.. ....++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 589999999997510 00136999999999999999999999999999999999999 99999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++..+. ..|+.+|+.++.. + . +||+||+||++|||||+.+|++
T Consensus 83 ~i~~~~q~~~~~~-~~t~~~~i~~~~~------------~-------~----------~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 83 IIGYVPQDDILHP-TLTVRETLMFAAK------------L-------R----------GLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred eEEEccCcccCCC-CCcHHHHHHHHHH------------h-------c----------cCCHHHHHHHHHHHHHHcCCCE
Confidence 3789999875332 2389998865321 0 0 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-hh-hcCCEEEEEeCCEEEEec
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-EL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-~~-~~~d~v~~l~~G~i~~~g 241 (263)
+||||||++||+.+++.+.+.|+++.++ ++|+|++||+++ ++ +.||++++|++|++++.|
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999998542 689999999997 55 579999999999997653
No 280
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.1e-46 Score=344.60 Aligned_cols=203 Identities=31% Similarity=0.451 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
+.+++++++|+|++ ..++++|||+|++||++||+|+||||||||+++|.|+++|++|+|+++|+
T Consensus 3 ~~l~~~~itK~f~~-----~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~ 77 (501)
T COG3845 3 PALEMRGITKRFPG-----VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77 (501)
T ss_pred ceEEEeccEEEcCC-----EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHH
Confidence 46999999999985 46999999999999999999999999999999999999999999999863
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
||+|+|++.+...+ ||.||+.++.... ..+..+..+++.++.+++||+-..++++.+||-||||||.|.+||+
T Consensus 78 ~~GIGMVhQHF~Lv~~l-TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 78 RLGIGMVHQHFMLVPTL-TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred HcCCcEEeecccccccc-chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence 89999998655444 9999999986432 3456677889999999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
++|++|||||||+-|-|...+++++.+++++++ |+|||++||.++++ ++|||+-||++|+++...+
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999764 78999999999998 6899999999999987766
No 281
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.3e-46 Score=312.87 Aligned_cols=163 Identities=28% Similarity=0.418 Sum_probs=144.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++| +|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 3 PVLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred cEEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 479999999987 69999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCC--CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 --PKSFVFQNPD--HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 --~~~~v~q~~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|++|++. ..+...|+.+|+.++.. ||+|||||++|||||+.
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHcc
Confidence 3789999853 12222389998866421 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
+|++|||||||+|||+.+++.+.+.|+++.++ +.|+|++||+++++ ++||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADA--GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998642 67999999999988 57999999999974
No 282
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-46 Score=311.35 Aligned_cols=162 Identities=41% Similarity=0.571 Sum_probs=143.1
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (178)
T cd03229 1 LELKNVSKRYGQK-----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75 (178)
T ss_pred CEEEEEEEEECCe-----EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHh
Confidence 4789999999753 599999999999999999999999999999999999999999998854
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+. ..|+.+|+.+. ||+|||||++|||||+.+|+
T Consensus 76 ~~i~~~~q~~~~~~-~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 76 RRIGMVFQDFALFP-HLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred hcEEEEecCCccCC-CCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 3678888875322 23888876542 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
++||||||+|||+.++..+.+.|++++++ .+.|+|++||+++++. .||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQ-LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999998653 2579999999999985 799999999884
No 283
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9e-46 Score=392.39 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=187.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|.|+++. +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 927 ~~L~I~nLsK~y~~~~---k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSG---RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred ceEEEEeEEEEecCCC---ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhh
Confidence 4799999999996311 3699999999999999999999999999999999999999999999865
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.+||++|++..... .|+++|+.++....+...++.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++
T Consensus 1004 ~IG~~pQ~~~L~~~-LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1004 SLGMCPQHNILFHH-LTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred cEEEEecCCcCCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 37999998754333 39999998875544454455567788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.+++.++++|+++. + |+|||++||+++++. +|||+++|++|+++..|++..+.+.
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~--g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-S--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh-C--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999983 2 689999999999985 7999999999999999999888654
No 284
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.1e-46 Score=355.86 Aligned_cols=206 Identities=26% Similarity=0.361 Sum_probs=171.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~---------- 99 (263)
.++|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|++++
T Consensus 258 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR-----PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred CceEEEeceEEEECCe-----eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 4589999999999753 599999999999999999999999999999999998876 699999864
Q ss_pred ----ceEEEecCCCCcccc-cCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVM-PTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~-~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++...... .++.+++.++... ......+.++++.++++.+++.+ ..++++.+|||||||||+|
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHH
Confidence 279999986432222 3566665433211 11112233456888999999987 8899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h-cCCEEEEEeCCEEEEecC
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~-~~d~v~~l~~G~i~~~g~ 242 (263)
||||+.+|++|||||||+|||+.+++.+.+.|++++++ ++.|||++|||++++ + +||++++|++|++++...
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 99999999999999999999999999999999998754 345799999999998 4 489999999999887654
No 285
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=7.9e-46 Score=307.16 Aligned_cols=162 Identities=30% Similarity=0.443 Sum_probs=144.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCCc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDHQ 111 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~~ 111 (263)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 1 i~~~~~~~~~~~~----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~- 75 (166)
T cd03223 1 IELENLSLATPDG----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL- 75 (166)
T ss_pred CEEEEEEEEcCCC----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-
Confidence 4789999999642 2599999999999999999999999999999999999999999999976 69999999753
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+..|+.+|+.++ ++.+||||||||++|||||+.+|+++||||||++||+
T Consensus 76 -~~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 76 -PLGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred -ccccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 233899997642 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
.++..+.+.|+++ +.|+|++||+.+....||++++|+++.
T Consensus 125 ~~~~~l~~~l~~~-----~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL-----GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh-----CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999875 369999999998777899999998763
No 286
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=312.83 Aligned_cols=176 Identities=30% Similarity=0.394 Sum_probs=151.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC---------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR---------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~---------~~ 101 (263)
.|+++|+++.|++.. ...++|+|+||+|++|++++|+||||||||||+|+|+|+. +|++|+|.+++ .+
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 689999999997421 0135999999999999999999999999999999999986 48999999864 47
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+.++.. ++ +|||||+||++|||||+.+|++||
T Consensus 82 ~~~~q~~~~~~-~~tv~~~l~~~~~----------------~~-------------~LSgGe~qrv~la~al~~~p~vll 131 (192)
T cd03232 82 GYVEQQDVHSP-NLTVREALRFSAL----------------LR-------------GLSVEQRKRLTIGVELAAKPSILF 131 (192)
T ss_pred EEecccCcccc-CCcHHHHHHHHHH----------------Hh-------------cCCHHHhHHHHHHHHHhcCCcEEE
Confidence 99999875332 2399999876420 00 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeC-CEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMED-GKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~-G~i~~~g 241 (263)
|||||++||+.++..+++.|+++++ .|.|||++||+++. + +.||++++|++ |++++.|
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLAD--SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH--cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999864 36899999999984 4 68999999999 9998764
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=357.26 Aligned_cols=205 Identities=23% Similarity=0.341 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 256 ~~l~~~~~~~~---------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 256 VRLRLDGLKGP---------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred cEEEEeccccC---------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 46999999732 389999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCC--CcccccCHHHHHHhhccCC----C--CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHH
Q 024738 100 --PKSFVFQNPD--HQVVMPTVEADVAFGLGNL----N--LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 --~~~~v~q~~~--~~~~~~tv~~~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. ..+...|+.+|+.++.... + ......++.+.++++.+++. +..++++.+|||||||||+
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~ 406 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI 406 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH
Confidence 3689999863 1222348999987643211 1 12223345678899999994 6789999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++.++++.|.++++. |.|||++|||++++ ++||++++|++|++++.|++++..
T Consensus 407 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 407 LGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ--GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999998653 67999999999998 589999999999999999887654
No 288
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3e-45 Score=363.78 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++|+.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 455 ~i~~~~vsf~y~~~~---~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 455 AITFENIRFRYAPDS---PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred eEEEEEEEEEcCCCC---ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHH
Confidence 699999999996431 3599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+++|+.++.. ..+.++..+.+ .+.++.+ |++.........||||||||++||||
T Consensus 532 ~i~~v~q~~~--lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 532 QMGVVLQENV--LFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred hCeEEccCCe--ehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3799999975 344599999987532 23333332222 1223333 45555566678999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.++.||++++|++|++++.|+++++++.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC---RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh---CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 999999999999999999999999999999874 25799999999999988999999999999999999999875
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.1e-45 Score=358.58 Aligned_cols=206 Identities=26% Similarity=0.442 Sum_probs=174.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 334 ~i~~~~v~~~y~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 334 AVEFRHITFEFANS----SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred eEEEEEEEEECCCC----CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 59999999999753 2589999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++.. +..|+++|+.++.. ..+.++..+.++ +.+..+ |++.........||||||||++||||
T Consensus 410 ~i~~v~q~~~l--f~~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 410 SIATVFQDAGL--FNRSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485 (585)
T ss_pred heEEEccCCcc--CcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 47999999853 34599999988632 223333333222 222222 55555667788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+.+|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.++.||++++|++|++++.|+.+++.+.
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~---~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 999999999999999999999999999999873 25799999999999988999999999999999999998764
No 290
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-46 Score=345.73 Aligned_cols=201 Identities=26% Similarity=0.462 Sum_probs=175.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+.+ .++|+++||+|++||.+||+|+|||||||++|+|.++.. ++|+|+++|
T Consensus 351 ~I~F~dV~f~y~~k----~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK----RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred cEEEEeeEEEeCCC----CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhh
Confidence 49999999999875 359999999999999999999999999999999999999 999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~ 168 (263)
.||||||+.. .+..|+.+|+.++.. ..+.++ +.+++++.|+.+ ....+...|||||||||+
T Consensus 426 ~Ig~VPQd~~--LFndTIl~NI~YGn~--sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 426 SIGVVPQDSV--LFNDTILYNIKYGNP--SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred heeEeCCccc--ccchhHHHHhhcCCC--CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 3899999874 455699999998843 234333 445556666543 244556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++.+|+++++|||||+||.++..++++.+.+.. .++|+|+|-|++..++.||+|+++++|++.+.|+.++++.
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~---~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMDVM---SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc---CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999999843 3689999999999999999999999999999999999998
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
+
T Consensus 575 ~ 575 (591)
T KOG0057|consen 575 P 575 (591)
T ss_pred h
Confidence 3
No 291
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.6e-46 Score=357.29 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=173.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 266 ~~~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 266 APVLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred CceEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 34899999983 169999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhc-c--CCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGL-G--NLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++. ..+...|+.+|+.... . .........++.+.++++.+++. ...++++.+|||||||||+||
T Consensus 336 ~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred HhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH
Confidence 3799999852 1122238888875321 1 01111223345678899999997 788999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++ ++||++++|++|+++..++++++.+
T Consensus 416 ~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~--g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 416 KCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ--NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9999999999999999999999999999999998653 68999999999998 5799999999999999998877653
No 292
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-45 Score=332.71 Aligned_cols=225 Identities=29% Similarity=0.377 Sum_probs=195.0
Q ss_pred CCcceEEEEeEEEEECCCc------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---
Q 024738 29 ESGVAIECSNLNYSITKKQ------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--- 99 (263)
Q Consensus 29 ~~~~~l~~~nl~~~y~~~~------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--- 99 (263)
.+.+.++.++++..|.-+. .+...+++++||++.+||.+||+|+||||||||-++|.+|+++. |+|.|.|
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i 350 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI 350 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence 3456899999999996431 22356899999999999999999999999999999999999766 9999964
Q ss_pred -------------ceEEEecCCCCcccc-cCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 100 -------------PKSFVFQNPDHQVVM-PTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 100 -------------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
++-.|||||...+.. .||.+-+.-++... ..+..+..+++.++|+.+||+ .-.+++|+++|||
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 367899999644322 28988888776543 456778888999999999998 4689999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
||||++||||++.+|++++||||||+||..-+.+++++|+++.++ .+.+.+++|||+..++ .||+|+||++|+|++.|
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k-~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK-HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999999999999999999999999999999999999999764 5799999999999995 79999999999999999
Q ss_pred ChhhHHhhhhhhhh
Q 024738 242 DGVSILNFIKSRQS 255 (263)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (263)
+.++++++....++
T Consensus 510 ~~~~if~~P~~~YT 523 (534)
T COG4172 510 PTEAVFANPQHEYT 523 (534)
T ss_pred CHHHHhcCCCcHHH
Confidence 99999987544433
No 293
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.5e-45 Score=357.08 Aligned_cols=204 Identities=32% Similarity=0.492 Sum_probs=173.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+... ..++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 337 ~i~~~~v~f~y~~~~--~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARP--DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 599999999997421 13699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|+||++. .+..|+++|+.++... .+.+ ++.++++.+++ +.........||||||||++
T Consensus 415 ~i~~~~Q~~~--lf~~Ti~~Ni~~~~~~--~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 415 RMALVPQDPV--LFAASVMENIRYGRPD--ATDE----EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred hceEEccCCc--cccccHHHHHhcCCCC--CCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 4899999985 3455999999886322 2222 33344444443 33344556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++++|++||||||||+||+.+++.+++.|+++.+ ++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~---~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMK---GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC---CCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999998742 579999999999998999999999999999999998876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 564 ~ 564 (576)
T TIGR02204 564 K 564 (576)
T ss_pred c
Confidence 4
No 294
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-45 Score=356.35 Aligned_cols=203 Identities=25% Similarity=0.394 Sum_probs=172.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|+... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 313 ~I~~~~v~~~y~~~~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQTD---HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred cEEEEEEEEECCCCC---CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 599999999997531 3699999999999999999999999999999999999999999999974
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----------GMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++.. +..|+++|+.++.. ..+.++. .++++.. |++...+.....||||||||++
T Consensus 390 ~i~~v~q~~~l--f~~ti~~Ni~~~~~--~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 390 RLAVVSQTPFL--FSDTVANNIALGRP--DATQQEI----EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred heEEEccCCee--ccccHHHHHhcCCC--CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 47999999853 44599999987632 2233332 3333433 3344455667889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++++.|+.+++.+
T Consensus 462 lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG---EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999874 2579999999999998899999999999999999999876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 539 ~ 539 (569)
T PRK10789 539 Q 539 (569)
T ss_pred c
Confidence 4
No 295
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-45 Score=312.59 Aligned_cols=183 Identities=23% Similarity=0.339 Sum_probs=156.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSF 103 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~ 103 (263)
+|+++|++++|+++ .+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|.+++ .++|
T Consensus 1 ~l~~~~l~~~~~~~-----~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (195)
T PRK13541 1 MLSLHQLQFNIEQK-----NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74 (195)
T ss_pred CeEEEEeeEEECCc-----EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEe
Confidence 48899999999652 3554 9999999999999999999999999999999999999999976 2689
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
++|++... +..|+.+|+.+...... ..+++.++++.+++.+..++++.+||+|||||++||||++.+|+++|||
T Consensus 75 ~~~~~~~~-~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD 148 (195)
T PRK13541 75 IGHNLGLK-LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD 148 (195)
T ss_pred ccCCcCCC-ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99886432 33499999987542221 1345667889999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEE
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGA 229 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v 229 (263)
|||+|||+.++..+.+.|++..+ ++.|+|++||+++.++.||.+
T Consensus 149 EP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 149 EVETNLSKENRDLLNNLIVMKAN--SGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCccccchhhee
Confidence 99999999999999999987543 368999999999998888865
No 296
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2e-45 Score=313.21 Aligned_cols=171 Identities=29% Similarity=0.384 Sum_probs=146.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR------------ 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~------------ 99 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (200)
T cd03217 1 LEIKDLHVSVGGK-----EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA 75 (200)
T ss_pred CeEEEEEEEeCCE-----EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh
Confidence 4789999999753 599999999999999999999999999999999999 579999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+.. .++.+++ ++...+|||||+||++|||||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~-~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 76 RLGIFLAFQYPPEIPG-VKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred hCcEEEeecChhhccC-ccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCC
Confidence 27788887643221 1444332 1233689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh--cCCEEEEEeCCEEEEecCh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE--YADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~--~~d~v~~l~~G~i~~~g~~ 243 (263)
++|||||||++||+.++..+++.|++++++ +.|||++||+++.+. .||++++|++|++++.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~--~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 999999999999999999999999998642 579999999999985 7999999999999999844
No 297
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.1e-45 Score=355.19 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=173.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++.+ .++|++|++
T Consensus 320 ~~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK-----LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred CeEEEEeeEEEEECCe-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCc
Confidence 4589999999999753 599999999999999999999999999999999999999999999965 489999986
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
.......|+.+|+.++......... ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~ 472 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 3222223999999876432222211 123557899999974 5789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-CEEE-EecChhhHHhh
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED-GKIV-MQADGVSILNF 249 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~-G~i~-~~g~~~~~~~~ 249 (263)
|||+.++..+.+.|+++. + |||+||||++++ .+||++++|++ |++. ..|+..++.+.
T Consensus 473 ~LD~~~~~~l~~~l~~~~----~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 473 DLDVETLRALEEALLEFA----G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred CCCHHHHHHHHHHHHHCC----C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999999999871 3 899999999998 47999999987 5876 56777666543
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-45 Score=355.02 Aligned_cols=207 Identities=27% Similarity=0.358 Sum_probs=174.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++
T Consensus 322 ~~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 322 DKVIEAENLSKSFGDR-----LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred CeEEEEEeEEEEECCe-----eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCch
Confidence 3589999999999753 599999999999999999999999999999999999999999999965 489999986
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
.......|+.+|+.++......... ...+..+++.+++.. ..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred hhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 2222223999999876432222211 123456899999974 5799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-CEEE-EecChhhHHhh
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED-GKIV-MQADGVSILNF 249 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~-G~i~-~~g~~~~~~~~ 249 (263)
|||+.++..+.+.|.++ . + |||+||||++++ .+||++++|++ |++. ..|+..++++.
T Consensus 475 ~LD~~~~~~l~~~l~~~---~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 475 DLDVETLRALEEALLEF---P-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred CCCHHHHHHHHHHHHhC---C-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999986 1 3 899999999998 57999999986 7876 57888777665
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=326.33 Aligned_cols=187 Identities=30% Similarity=0.514 Sum_probs=170.5
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------------ceEEEecCCCCcccccCH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------------~~~~v~q~~~~~~~~~tv 117 (263)
=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.+++ ++|||||+..+++.+ ||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~-tV 93 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY-TV 93 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce-EE
Confidence 378999988789999999999999999999999999999999864 589999999877766 99
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l 197 (263)
+.|+.|+.... .....+++.+.+|++++++++|..|||||||||+|+|||+.+|++||||||.++||...+.++
T Consensus 94 rgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 94 RGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred ecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 99999986432 234567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+-.|.++.++- .+.|++|||.++++ ..||+|++|++|++.+.|+.++++..
T Consensus 168 lpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 168 LPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999998754 58999999999997 68999999999999999999999874
No 300
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-45 Score=322.74 Aligned_cols=189 Identities=28% Similarity=0.395 Sum_probs=157.2
Q ss_pred cceeceeeEEe-----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-ceEEEecCCCCcccccCHHHHHHhhc
Q 024738 52 PILRDCSFSVP-----SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-PKSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 52 ~iL~~vsl~i~-----~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-~~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
..+++++|++. +||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++...+ ..|+.+++.+..
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~-~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADY-EGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCC-CCCHHHHHHHHh
Confidence 36677777776 7999999999999999999999999999999999988 7999999875333 349999986543
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 126 GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
.... . ......++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|++++
T Consensus 87 ~~~~-~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 162 (246)
T cd03237 87 KDFY-T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162 (246)
T ss_pred hhcc-c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 2111 1 11235678899999988999999999999999999999999999999999999999999999999999986
Q ss_pred hcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE--EecChhhH
Q 024738 206 GDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV--MQADGVSI 246 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~--~~g~~~~~ 246 (263)
++ .++|||+||||++++. +||++++|+++..+ ..+++.++
T Consensus 163 ~~-~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 163 EN-NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred Hh-cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 53 3689999999999985 79999999765433 34555543
No 301
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.1e-45 Score=356.64 Aligned_cols=199 Identities=28% Similarity=0.354 Sum_probs=173.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
.++|+++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++-.++|++|++..
T Consensus 338 ~~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~ 411 (590)
T PRK13409 338 ETLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKP 411 (590)
T ss_pred ceEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccC
Confidence 458999999999975 25999999999999999999999999999999999999999999988779999999754
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
.. ..||.+|+.++.... .. ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 412 ~~-~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 412 DY-DGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred CC-CCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 33 349999987653211 11 1245788999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 191 ~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
+.++..+.+.|++++++ .|.|||+||||++++ .+||++++|++ ++...|..
T Consensus 486 ~~~~~~l~~~l~~l~~~-~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEE-REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 99999999999998754 367999999999998 57999999965 77776653
No 302
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=351.06 Aligned_cols=207 Identities=20% Similarity=0.317 Sum_probs=170.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|. ++|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++
T Consensus 248 ~~~i~~~~l~~~~~-------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 248 EVILEVRNLTSLRQ-------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred CcEEEEeCcccccC-------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 35899999999741 489999999999999999999999999999999999999999999964
Q ss_pred ---ceEEEecCCCC--cccccCHHHH-----HHhhccCCCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---PKSFVFQNPDH--QVVMPTVEAD-----VAFGLGNLNL-THDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---~~~~v~q~~~~--~~~~~tv~~~-----~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++.. .+...++.+| +.+.....+. .....++.+.++++.+++. +..++++.+|||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH
Confidence 17899998531 1111255554 3322111121 2233456678899999995 568999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+||||++.+|++|||||||+|||+.++..+++.|.++.++ |.|||++|||++++ ++||++++|++|+++..+++.+.
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998643 67999999999998 58999999999999988876543
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.6e-45 Score=301.72 Aligned_cols=161 Identities=34% Similarity=0.525 Sum_probs=133.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
|+++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.- +..
T Consensus 1 l~~~~l~~~~~~~-----~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~--~~~------- 66 (163)
T cd03216 1 LELRGITKRFGGV-----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE--VSF------- 66 (163)
T ss_pred CEEEEEEEEECCe-----EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE--CCc-------
Confidence 5789999999753 59999999999999999999999999999999999999999999987631 000
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~ 193 (263)
. +..+... ..+++ +.+||+||+||++||||++.+|++|||||||++||+.+
T Consensus 67 ~-~~~~~~~---------------------~~i~~-------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 67 A-SPRDARR---------------------AGIAM-------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred C-CHHHHHh---------------------cCeEE-------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 0 1111000 00000 00199999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEE
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVM 239 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~ 239 (263)
++.+.+.|+++.++ +.|+|++||+++++ +.||++++|++|++++
T Consensus 118 ~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 118 VERLFKVIRRLRAQ--GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999998643 67999999999987 5799999999999875
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6e-45 Score=313.80 Aligned_cols=187 Identities=30% Similarity=0.437 Sum_probs=153.7
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------------- 99 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------------- 99 (263)
.+.|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (218)
T cd03290 2 QVTNGYFSWGSG----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRN 77 (218)
T ss_pred eeeeeEEecCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhh
Confidence 578999999753 3699999999999999999999999999999999999999999998843
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++.. .... ...++++.+++.+ .+++++.+|||||+||
T Consensus 78 ~~~i~~~~q~~~~~--~~t~~~nl~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 78 RYSVAYAAQKPWLL--NATVEENITFGSP---FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred cceEEEEcCCCccc--cccHHHHHhhcCc---CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 378999988532 3499999977531 1111 1233444455432 2456789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIE--AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~--~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
++|||||+.+|++|||||||++||+.++..+++ +++.+. + .+.|+|++||+.+.+..||++++|++|.
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~-~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-D-DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-c-CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999999999999998 555553 2 3689999999999987899999999873
No 305
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.9e-45 Score=333.14 Aligned_cols=179 Identities=37% Similarity=0.504 Sum_probs=158.6
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 69 LLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 69 l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
|+||||||||||+|+|+|+++|++|+|.+++ .++|+||++..+.. .|+.+|+.++....+....+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~-~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPH-MTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCC-CcHHHHHHHHHhhcCCCHHHHHH
Confidence 6899999999999999999999999999965 48999999764333 39999999875433444455566
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt 217 (263)
++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ .|.|+|+||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tiiivT 158 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVT 158 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 7889999999999999999999999999999999999999999999999999999999999999998653 368999999
Q ss_pred cCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 218 HRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 218 H~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||++++ ..||++++|++|+++..|+++++.+.
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999997 57999999999999999999998764
No 306
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=355.91 Aligned_cols=212 Identities=27% Similarity=0.360 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|++.. +..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 3 ALLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred cEEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 4899999999996421 113599999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+.. .|+.+|+.+.....+....+.++++.++++.+|+.+..++++.+||+||+||++|||||+
T Consensus 82 ~~~~~~i~~v~q~~~l~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSH-LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred HHHhccEEEEeCCcccCCC-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 37999999853332 389999987543333344455667889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
.+|++|||||||+|||+.+++.+.++|+++.+ .+.|+|++||+++.++.||++++|++|++++.|++++..
T Consensus 161 ~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~--~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999864 368999999999988889999999999999999998764
No 307
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.1e-45 Score=311.05 Aligned_cols=203 Identities=29% Similarity=0.392 Sum_probs=183.8
Q ss_pred cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 50 ~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
...+|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++++++++..-..-+....|.++|+.+.....+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 35799999999999999999999999999999999999999999999999988766543322222399999998777778
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~ 209 (263)
++.++++++++++.+.-+|.++.++|++.+|.||+-|+++|.|...+|++||+||-.+..|+.-+++..+.+.++.++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-- 196 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-- 196 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhh
Q 024738 210 EVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQ 254 (263)
Q Consensus 210 ~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 254 (263)
+.|||+||||++.+ ++||++++|++|++...|+++++...+....
T Consensus 197 ~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHhh
Confidence 47999999999998 5899999999999999999999988655443
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-45 Score=302.84 Aligned_cols=158 Identities=37% Similarity=0.610 Sum_probs=139.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++. .++++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++ .
T Consensus 1 l~~~~l~~~~~~~~---~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (171)
T cd03228 1 IEFKNVSFSYPGRP---KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN 77 (171)
T ss_pred CEEEEEEEEcCCCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhh
Confidence 47899999997631 2589999999999999999999999999999999999999999999865 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++.. +..|+.+|+ ||+|||||++|||||+.+|++|
T Consensus 78 i~~~~~~~~~--~~~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 78 IAYVPQDPFL--FSGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEEEcCCchh--ccchHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 6788887642 223666664 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
||||||+|||+.++..+.+.|+++. + ++|||++||+++++..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA-K--GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999984 2 479999999999986699999999884
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-45 Score=313.04 Aligned_cols=208 Identities=30% Similarity=0.438 Sum_probs=174.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
..+.|+++|++++|+++ ++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.+
T Consensus 28 ~~~li~l~~v~v~r~gk-----~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 28 NEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF 102 (257)
T ss_pred CcceEEecceEEEECCE-----eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchH
Confidence 34689999999999875 699999999999999999999999999999999999999999998743
Q ss_pred ----ceEEEecCCCCcc-cccCHHHHHHhhc----cCCC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQV-VMPTVEADVAFGL----GNLN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ----~~~~v~q~~~~~~-~~~tv~~~~~~~~----~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
+||+|.-.-...+ ...++++-+.-++ ..+. ...++..+++..+++.+|+.+..+++..+||-||||||.|
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHH
Confidence 4677764322111 1125666544331 1121 2234556788899999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
||||+.+|++|||||||+|||..+++.+.+.|.+++....+.++|+|||+.+++ ...++++.+++|+++..|.
T Consensus 183 aRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999998765678999999999998 5789999999999998874
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=7.2e-45 Score=312.91 Aligned_cols=188 Identities=21% Similarity=0.177 Sum_probs=155.8
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-EcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++....+.+.+..+.. .|+.+|+.+....++..
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~-ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPG-LTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCc-CcHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999997 76643334444432222 39999998765433443
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
.++.. ..+.+.++++...++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+..+ +.
T Consensus 81 ~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~ 154 (213)
T PRK15177 81 GDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QK 154 (213)
T ss_pred HHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CC
Confidence 33322 2344567888888999999999999999999999999999999999999999999999998866443 24
Q ss_pred EEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 212 TALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 212 tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|+|++||+++++ .+||++++|++|++++.++.++..
T Consensus 155 ~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 155 GLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred cEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 799999999998 589999999999999999987764
No 311
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.5e-45 Score=357.83 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=168.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEEcC---------ceEEEecCCCCcccccCHHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT--NGHVYVKR---------PKSFVFQNPDHQVVMPTVEA 119 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~I~~~~---------~~~~v~q~~~~~~~~~tv~~ 119 (263)
+++|+|+||++++||++||+||||||||||||+|+|+.+|+ +|+|.+++ +++|++|++..... .||+|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~-lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH-LTVRE 159 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCc-CCHHH
Confidence 46999999999999999999999999999999999999885 89999976 37999999764433 39999
Q ss_pred HHHhhccCC---CCChHHHHHHHHHHHHHcCCCccc-----CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 120 DVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYL-----QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 120 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
|+.+..... ..+.++..++++++++.+||.+.. ++.+.+||||||||++|||+|+.+|++|||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 998864321 223445556788999999998755 456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.++..+.+.|+++++ +|+|||++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 240 ~~~~~l~~~L~~l~~--~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 240 TAAYRLVLTLGSLAQ--KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999875 36899999999984 5 6899999999999999999988764
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=354.84 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=171.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++||+++|+++ .+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+ .+||++|++
T Consensus 310 ~~~l~~~~l~~~y~~~-----~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR-----IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred CceEEEEeeEEEeCCe-----eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 4589999999999753 599999999999999999999999999999999999999999999963 589999975
Q ss_pred CCccc-ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 109 DHQVV-MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 109 ~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
..... ..++.+++... ........+.++++.+++. ...++++.+|||||||||+|||+|+.+|++|||||||
T Consensus 385 ~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 385 LEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred hhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 22111 12566654311 1122245678899999996 4789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-EecChhhHH
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQADGVSIL 247 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
++||+.++..+.+.|.++ .| |||+||||++++ .+||++++|++|+++ +.|+.+++.
T Consensus 459 ~~LD~~~~~~l~~~L~~~----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 459 NHLDLDMRQALTEALIDF----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCHHHHHHHHHHHHHc----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999986 24 999999999998 579999999999997 788887763
No 313
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-44 Score=381.22 Aligned_cols=202 Identities=20% Similarity=0.308 Sum_probs=173.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|.... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|
T Consensus 1237 ~I~f~nVsf~Y~~~~---~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL---PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCCC---CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 699999999996431 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
++++|||+|. .+..|+++|+..+. ..+.+ .+.++++..++ +.........||||||||++
T Consensus 1314 ~IsiVpQdp~--LF~GTIreNLd~~~---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1314 VLGIIPQAPV--LFSGTVRFNLDPFN---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred ccEEECCCCc--cccccHHHHhCcCC---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 4899999985 34569999997642 22333 34445555444 33344455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||..+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++++
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~---~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF---KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999874 3589999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1462 ~ 1462 (1622)
T PLN03130 1462 N 1462 (1622)
T ss_pred C
Confidence 4
No 314
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-44 Score=380.27 Aligned_cols=202 Identities=21% Similarity=0.300 Sum_probs=173.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|
T Consensus 1234 ~I~f~nVsf~Y~~~~---~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL---PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCCC---CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 599999999996421 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
++++|||+|.. +..|+++|+.++. ..+.++ +.++++..++ +.........||||||||++
T Consensus 1311 ~i~iVpQdp~L--F~gTIr~NL~~~~---~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1311 VLSIIPQSPVL--FSGTVRFNIDPFS---EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred hcEEECCCCee--eCccHHHHcCCCC---CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 48999999853 4569999997642 233333 4445555444 33444556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+++.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++++
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~---~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF---KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 3589999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1459 ~ 1459 (1495)
T PLN03232 1459 R 1459 (1495)
T ss_pred C
Confidence 5
No 315
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.2e-44 Score=378.80 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=175.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----------------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---------------------- 90 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---------------------- 90 (263)
.|+++||+|+|+++. ..++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~--~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP--NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCC--CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 599999999997531 13699999999999999999999999999999999999998
Q ss_pred --------------------------------CceEEEEcC-------------ceEEEecCCCCcccccCHHHHHHhhc
Q 024738 91 --------------------------------TNGHVYVKR-------------PKSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 91 --------------------------------~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
++|+|++++ .++||+|+|. +|..|++||+.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--LFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--cccccHHHHHhcCC
Confidence 699999975 4899999985 34569999999974
Q ss_pred cCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 126 GNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
. ..+.++ +.++++..+ ++.........||||||||++|||||+++|++||||||||+||+.+.
T Consensus 1321 ~--~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E--DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C--CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 3 233333 334444433 34444556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC----CEEE-EecChhhHHhhhhhhhh
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED----GKIV-MQADGVSILNFIKSRQS 255 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~~~~~~~~ 255 (263)
+.+.+.|.++.. .+++|+|+|||++..++.||+|++|++ |+++ +.|+++++++...+.+.
T Consensus 1395 ~~I~~~L~~~~~-~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~ 1459 (1466)
T PTZ00265 1395 KLIEKTIVDIKD-KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYK 1459 (1466)
T ss_pred HHHHHHHHHHhc-cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHH
Confidence 999999998742 135799999999999999999999999 8955 89999999863233333
No 316
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=352.89 Aligned_cols=203 Identities=27% Similarity=0.322 Sum_probs=165.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--eEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--KSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--~~~v~q~~~~ 110 (263)
||+++||+++|+++ ++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.+++. ++|++|++..
T Consensus 1 ~i~i~nls~~~g~~-----~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~ 75 (638)
T PRK10636 1 MIVFSSLQIRRGVR-----VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75 (638)
T ss_pred CEEEEEEEEEeCCc-----eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence 58999999999864 5999999999999999999999999999999999999999999999764 7899996422
Q ss_pred cccccCHHHHHHhhc-----------------------cCC----CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 111 QVVMPTVEADVAFGL-----------------------GNL----NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~-----------------------~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
. ..++.+++.-.. ... .....+...++.++++.+|+. ...++++.+||||
T Consensus 76 ~--~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 76 L--PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred C--CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 1 123333221000 000 000112345678899999997 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-Ee
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQ 240 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~ 240 (263)
|||||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++ .+||++++|++|++. +.
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~ 228 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYT 228 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999875 24999999999998 579999999999996 46
Q ss_pred cChhhHH
Q 024738 241 ADGVSIL 247 (263)
Q Consensus 241 g~~~~~~ 247 (263)
|+.....
T Consensus 229 g~~~~~~ 235 (638)
T PRK10636 229 GNYSSFE 235 (638)
T ss_pred CCHHHHH
Confidence 7666554
No 317
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-44 Score=361.35 Aligned_cols=208 Identities=32% Similarity=0.469 Sum_probs=180.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+.+. ..+||+|+||++++|+.+||||||||||||.+.+|-.++.|++|.|.+++
T Consensus 987 ~I~~~~V~F~YPsRP--~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP--DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred EEEEeeeEeeCCCCC--CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 599999999999753 46899999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH-HHHc------CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-LDAV------GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~------~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++.|.|+|.+ |..|++||+.+|.. ..+.+++.+.++.+ +..| |++.....+..+||||||||+|||||
T Consensus 1065 ~i~lVsQEP~L--F~~TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1065 QIGLVSQEPVL--FNGTIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred hcceeccCchh--hcccHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 58999999963 45699999999822 24555554433221 1111 55556667788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++|++|||||.||+||.++.+.+.+.|.+.. .|+|+|+|.|++..++.||.|.|+++|+|++.|+++++++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~---~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM---EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh---cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC
Confidence 999999999999999999999999999999874 36899999999999999999999999999999999999983
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.9e-44 Score=351.22 Aligned_cols=204 Identities=27% Similarity=0.368 Sum_probs=171.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
..+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.. .++|++|++
T Consensus 317 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 317 KIVFEMENVNYQIDGK-----QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred CceEEEeeeEEEECCe-----EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc
Confidence 4589999999999753 599999999999999999999999999999999999999999999954 489999975
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
.......|+.+|+.++....... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred cccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 32222239999987753211111 1134577889999996 56889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe-CCEEEE-ecChhhH
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME-DGKIVM-QADGVSI 246 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~-~G~i~~-~g~~~~~ 246 (263)
+||+.++..+.+.|+++ . .|||+||||.+++ .+||++++|+ +|++.. .|+-.+.
T Consensus 470 ~LD~~~~~~l~~~l~~~----~-~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 470 DLDVETLELLEELLDSY----Q-GTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCHHHHHHHHHHHHhC----C-CeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999875 2 3999999999998 5899999998 899876 4555554
No 319
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-44 Score=323.68 Aligned_cols=223 Identities=27% Similarity=0.399 Sum_probs=191.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.+.|+++|++..|.... ....++++|||+|++||.+||+|+||||||-..+.|+||++- -+|+|.|+|
T Consensus 4 ~~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CcceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 45899999999997532 346799999999999999999999999999999999999854 368999864
Q ss_pred -----------ceEEEecCCCCcccc-cCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCC---cccCCCCCCCChHH
Q 024738 100 -----------PKSFVFQNPDHQVVM-PTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMS---NYLQRPVQTLSGGQ 163 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~~-~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGq 163 (263)
+|+++||+|-..... -|+...+...+. ..+.+.++.++++.++|+.+|+. ..++.+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 589999998533321 177776665543 34667788889999999999996 36789999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
||||.||+||+++|++||.||||++||...+.+++++|+++.++ .|+.++++|||+..++ +||||+||.+|++++.|.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 99999999999999999999999999999999999999999765 5899999999999995 799999999999999999
Q ss_pred hhhHHhhhhhhhh
Q 024738 243 GVSILNFIKSRQS 255 (263)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (263)
.++++....+-++
T Consensus 242 t~~lF~~PqHpYT 254 (534)
T COG4172 242 TETLFAAPQHPYT 254 (534)
T ss_pred HHHHhhCCCChHH
Confidence 9999986444333
No 320
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-43 Score=349.52 Aligned_cols=203 Identities=25% Similarity=0.327 Sum_probs=165.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--eEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--KSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--~~~v~q~~~~ 110 (263)
+|+++||+++|+++ ++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.+++. +++++|.+..
T Consensus 3 ~l~i~~ls~~~~~~-----~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~ 77 (635)
T PRK11147 3 LISIHGAWLSFSDA-----PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77 (635)
T ss_pred EEEEeeEEEEeCCc-----eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC
Confidence 79999999999763 5999999999999999999999999999999999999999999999764 5788886532
Q ss_pred cccccCHHHHHHhhc-----------------cC-----------------CCCChHHHHHHHHHHHHHcCCCcccCCCC
Q 024738 111 QVVMPTVEADVAFGL-----------------GN-----------------LNLTHDEVRSKVAKALDAVGMSNYLQRPV 156 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~-----------------~~-----------------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 156 (263)
. ...++.+++..+. .. ......+...++.++++.+|+. .++++
T Consensus 78 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~ 154 (635)
T PRK11147 78 N-VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAAL 154 (635)
T ss_pred C-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCch
Confidence 1 1124444321100 00 0000112345678899999997 38899
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++. .|||+||||.+++ ..||++++|++|
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----~tvlivsHd~~~l~~~~d~i~~L~~G 229 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-----GSIIFISHDRSFIRNMATRIVDLDRG 229 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-----CEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 9999999999999999999999999999999999999999999998861 3999999999998 579999999999
Q ss_pred EEEE-ecChhhHHh
Q 024738 236 KIVM-QADGVSILN 248 (263)
Q Consensus 236 ~i~~-~g~~~~~~~ 248 (263)
+++. .|+..++..
T Consensus 230 ~i~~~~g~~~~~~~ 243 (635)
T PRK11147 230 KLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEecCCHHHHHH
Confidence 9974 577766544
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.8e-44 Score=345.42 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=163.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++|+|+++ .++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 322 ~i~~~~v~f~y~~~----~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 322 TLELRNVTFAYQDN----GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred eEEEEEEEEEeCCC----CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 69999999999743 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCC-----CCCCChHHHHHHHHHHHHh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP-----VQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~ 174 (263)
+++|++|++. .+..|+.+| + . ...++.+.++++.+++....+.. ...||||||||++||||++
T Consensus 398 ~i~~v~q~~~--lf~~ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~ 465 (547)
T PRK10522 398 LFSAVFTDFH--LFDQLLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA 465 (547)
T ss_pred heEEEecChh--HHHHhhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 4899999874 334477766 1 1 12234567788888887654322 4589999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
++|++|||||||++||+.+++.+.+.+.+..+. .++|+|++||+++.++.||++++|++|++++...
T Consensus 466 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 466 EERDILLLDEWAADQDPHFRREFYQVLLPLLQE-MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEEechHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999998765432 2579999999998888999999999999997743
No 322
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.3e-44 Score=344.17 Aligned_cols=173 Identities=34% Similarity=0.542 Sum_probs=146.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
.|+++||+|+|+++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 334 ~I~~~~vsf~Y~~~----~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYPGS----PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred eEEEEEEEEecCCC----CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhh
Confidence 59999999999753 2599999999999999999999999999999999999999999999987 6
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~l 169 (263)
++||+|+|. .+..|+++|+.++.. ..+. +++.++++..++.++ .......||||||||++|
T Consensus 410 i~~V~Q~~~--lF~~TI~eNI~~g~~--~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 410 ISVFAQDAH--LFDTTVRDNLRLGRP--DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred eEEEccCcc--cccccHHHHHhccCC--CCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 899999985 345699999998632 2233 334455565555433 333456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
||||+++|++||||||||+||+.+.+.+.+.+.++. +++|+|+|||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~---~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL---SGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEecCC
Confidence 999999999999999999999999999999999863 357999999984
No 323
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.1e-44 Score=343.83 Aligned_cols=186 Identities=35% Similarity=0.537 Sum_probs=157.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. .++|+|+||+|++|+.++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 320 ~i~~~~v~f~y~~~~---~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR---APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEECCCCC---cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 699999999997532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++. .+..|++||+.++... .+. +++.++++..++.+ ........||||||||++
T Consensus 397 ~i~~v~Q~~~--lf~~ti~~Ni~~~~~~--~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 397 QIAWVPQHPF--LFAGTIAENIRLARPD--ASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred heEEEcCCCc--ccCcCHHHHHhccCCC--CCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 4899999985 3445999999886322 222 23444555555433 344456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
|||||+++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||+++.++.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~---~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA---QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999999874 357999999999999899999875
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-43 Score=344.39 Aligned_cols=197 Identities=23% Similarity=0.308 Sum_probs=163.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|+|+++.....++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 36999999999975311113599999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC------CCCChHHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV------QTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+++|.. ....++++.++++.+++.+..++.+ ..||||||||++||||
T Consensus 416 ~~i~~v~q~~~--lf~~ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRa 484 (555)
T TIGR01194 416 DLFSAIFADFH--LFDDLIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICA 484 (555)
T ss_pred hhCcEEccChh--hhhhhhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHH
Confidence 3789999874 33447777731 1123455778899999987654433 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVK-NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~-~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
++.+|++|||||||++||+.+++.+.+.+. .+.. .++|+|++||+++.++.||+|++|++|++++.-
T Consensus 485 ll~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~--~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 485 WLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR--QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999988664 3422 357999999999988899999999999998653
No 325
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=313.03 Aligned_cols=198 Identities=29% Similarity=0.430 Sum_probs=167.6
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc------------eEEEe-cCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------KSFVF-QNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~------------~~~v~-q~~~~~~~~~tv 117 (263)
.++++|+||+|++|++++++|||||||||+||+++|++.|++|.|.++|. +++++ |........ .+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl-p~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL-PA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec-hh
Confidence 46899999999999999999999999999999999999999999999763 33333 222221222 23
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l 197 (263)
.+.+...-..+..+.++..++...+.+.++|++.++.+++.||-|||.|+.||.||+++|++|+|||||-|||..++..+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 33332222234566778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
.+.++++..+ .+.||+++||+++.+ ..||||+.|+.|+++++|+.+++.+..
T Consensus 196 r~Flke~n~~-~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 196 REFLKEYNEE-RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHh-hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999998765 468999999999997 589999999999999999998887653
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-43 Score=372.46 Aligned_cols=198 Identities=29% Similarity=0.525 Sum_probs=164.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-C------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-R------------ 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-~------------ 99 (263)
.|+++||+|+|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++ +
T Consensus 382 ~I~~~nVsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK--DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCC--CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHH
Confidence 699999999997531 1369999999999999999999999999999999999999999999994 2
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC-C---------C--------------------------------------
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL-N---------L-------------------------------------- 130 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~---------~-------------------------------------- 130 (263)
+++||+|++.. +..|+++|+.++.... . .
T Consensus 460 ~~Ig~V~Q~~~L--F~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 460 SKIGVVSQDPLL--FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HhccEecccccc--hhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 37999999864 3359999999863110 0 0
Q ss_pred ---ChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 024738 131 ---THDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196 (263)
Q Consensus 131 ---~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~ 196 (263)
.....++.+.++++.+++.++ ....+.+||||||||++|||||+++|++||||||||+||+.++..
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 000112456667777766543 356678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCC
Q 024738 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235 (263)
Q Consensus 197 l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G 235 (263)
+.+.|.++.++ +|+|+|+|||+++.++.||+|++|++|
T Consensus 618 i~~~L~~~~~~-~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGN-ENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhc-CCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 99999998542 368999999999999899999999986
No 327
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.1e-45 Score=295.37 Aligned_cols=195 Identities=33% Similarity=0.535 Sum_probs=168.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++++.+.-++ .++|+++||++.+||+++|+||||||||||+|+++-|+.|++|+++|.|
T Consensus 3 lle~kq~~y~a~~-----a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq 77 (223)
T COG4619 3 LLELKQVGYLAGD-----AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77 (223)
T ss_pred chHHHHHHhhcCC-----CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHH
Confidence 3556666544433 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
+++|+.|.|.+ +..||++|+.|+...++... .+.++.++++++++.+ .+++.+.+||||||||++|+|-|..-|+
T Consensus 78 ~VsY~~Q~paL--fg~tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ 153 (223)
T COG4619 78 QVSYCAQTPAL--FGDTVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK 153 (223)
T ss_pred HHHHHHcCccc--cccchhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCc
Confidence 47999999864 34599999998864433222 2456778999999974 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-hhcCCEEEEEeCCEE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKI 237 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~~~~d~v~~l~~G~i 237 (263)
+||||||||+||+.+++.+.++|.++.++ +...+++||||.+. ++++|+++-+..|.+
T Consensus 154 ILLLDE~TsALD~~nkr~ie~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 154 ILLLDEITSALDESNKRNIEEMIHRYVRE-QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEecCchhhcChhhHHHHHHHHHHHhhh-hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999999999999999999864 46899999999999 589999999999876
No 328
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.3e-43 Score=372.02 Aligned_cols=202 Identities=22% Similarity=0.279 Sum_probs=173.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1308 ~I~f~nVsf~Y~~~~---~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL---PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCC---CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 599999999997532 3599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.+++|||+|. +|..|+++|+..+ . ..+. +++.++++.+++.+. .......||||||||++
T Consensus 1385 ~I~iVpQdp~--LF~gTIreNIdp~-~--~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1385 QFSMIPQDPV--LFDGTVRQNVDPF-L--EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred cceEECCCCc--cccccHHHHhCcc-c--CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 4899999985 3456999999642 1 2333 345566666666543 23344689999999999
Q ss_pred HHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEA-CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~-p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+++ |++||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|++++++
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~---~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF---SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC---CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999995 89999999999999999999999999864 257999999999999999999999999999999999998
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 1533 ~~ 1534 (1560)
T PTZ00243 1533 MN 1534 (1560)
T ss_pred hC
Confidence 64
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.1e-43 Score=346.52 Aligned_cols=200 Identities=25% Similarity=0.367 Sum_probs=166.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++||+++|+++ .++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|++
T Consensus 506 ~~~L~~~~ls~~y~~~----~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 506 PPIISFSDASFGYPGG----PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred CceEEEEeeEEEeCCC----CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc
Confidence 3589999999999642 2589999999999999999999999999999999999999999999865 589999986
Q ss_pred CCcccccCHHHHHHhhc-c-CCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 109 DHQVVMPTVEADVAFGL-G-NLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
.. .. ++.++..+.. . ..... .+++.++++.+++. ...++++.+|||||||||+|||||+.+|++||||||
T Consensus 582 ~~--~l-~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 582 VD--GL-DLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred cc--cC-CcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 21 11 3334432211 1 11111 34577899999998 467899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE-EecChhhH
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSI 246 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~ 246 (263)
|++||+.++..+.+.|.++ ++ |||+||||++++. +||++++|++|+++ +.|+..+.
T Consensus 655 T~~LD~~s~~~l~~~L~~~----~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 655 SNHLDLDAVEALIQGLVLF----QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCHHHHHHHHHHHHHc----CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999998888764 24 9999999999985 79999999999998 66766554
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.1e-43 Score=370.17 Aligned_cols=202 Identities=21% Similarity=0.275 Sum_probs=173.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+.+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1284 ~I~f~nVsf~Y~~~~---~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL---DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred cEEEEEEEEEeCCCC---cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 699999999997532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
+++++||+|.. +..|+++|+... . ..+.++ +.++++.+++ +.........||||||||++
T Consensus 1361 ~i~iVpQdp~L--F~gTIr~NLdp~-~--~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1361 KITIIPQDPVL--FSGSLRMNLDPF-S--QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred cCeEECCCCcc--cCccHHHHcCcc-c--CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 48999999853 446999999632 1 233333 3445555444 33344455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+++...+.+.|++.. +++|+|+|+|+++.+..||+|++|++|+|++.|+++++++
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~---~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF---EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998864 3579999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
+
T Consensus 1509 ~ 1509 (1522)
T TIGR00957 1509 Q 1509 (1522)
T ss_pred C
Confidence 5
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.7e-43 Score=285.56 Aligned_cols=141 Identities=40% Similarity=0.500 Sum_probs=130.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCCc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDHQ 111 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~~ 111 (263)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|++++ .++|++|
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~----- 70 (144)
T cd03221 1 IELENLSKTYGGK-----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ----- 70 (144)
T ss_pred CEEEEEEEEECCc-----eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-----
Confidence 4789999999753 599999999999999999999999999999999999999999999986 4677776
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
||+||+||++|||||+.+|+++||||||++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCE
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~ 236 (263)
.++..+.+.|+++ +.|+|++||+++++ +.||++++|++||
T Consensus 104 ~~~~~l~~~l~~~-----~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKEY-----PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHc-----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999876 25999999999998 5799999999985
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.4e-43 Score=310.29 Aligned_cols=189 Identities=30% Similarity=0.377 Sum_probs=156.8
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------EcC------
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----------VKR------ 99 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----------~~~------ 99 (263)
.||+|+|+.+ ..+|+|+|+ +++|++++|+||||||||||||+|+|+++|++|+|. +++
T Consensus 4 ~~~~~~y~~~----~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 4 DEPVHRYGPN----SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred cCcceeecCc----chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 4889999753 258999995 999999999999999999999999999999999995 322
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|.+.... .++.+++.... ......+.+.++++.+|+++..++.+.+||+|||||++||
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~--~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIP--KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hHHhhhcccceeeecchhccCc--hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 1467777654322 25566665432 1223345678899999999888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ 240 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~ 240 (263)
|||+.+|+++||||||++||+.++..+.+.|+++.++ ++|||++||+++++. +||++++|+ |++.+.
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 9999999999999999999999999999999998643 579999999999985 799999995 556543
No 333
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=294.60 Aligned_cols=219 Identities=28% Similarity=0.403 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
+.|+++||+++|++ +.+|+++||++.+||.-+|+|||||||||++.+|+|..+|+.|+|++.+
T Consensus 4 ~iL~~~~vsVsF~G-----F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~I 78 (249)
T COG4674 4 IILYLDGVSVSFGG-----FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI 78 (249)
T ss_pred ceEEEeceEEEEcc-----eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHH
Confidence 47999999999987 4699999999999999999999999999999999999999999999976
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCC--------CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLN--------LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.||.-||.|..+... ||++|+.++..... ....+-+++++++|...||.+..++....||.||||++.
T Consensus 79 Ar~GIGRKFQ~PtVfe~l-tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 79 ARAGIGRKFQKPTVFENL-TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred HHhccCccccCCeehhhc-cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhh
Confidence 278889999755444 99999988754221 112233568999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|++.++.+|++|++|||++|+-.....+.-++|+.++. +.+|++|.|||++++ +|++|-||+.|.+..+|+.+++-
T Consensus 158 IGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~---~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG---KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc---CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99999999999999999999999999999999999964 369999999999995 89999999999999999999987
Q ss_pred hhhhhhhhhhhhh
Q 024738 248 NFIKSRQSSYIER 260 (263)
Q Consensus 248 ~~~~~~~~~~~~~ 260 (263)
++ +.....|+++
T Consensus 235 ~d-p~ViEvYLGr 246 (249)
T COG4674 235 ND-PKVIEVYLGR 246 (249)
T ss_pred cC-cceEeeeccc
Confidence 65 3445556654
No 334
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.2e-43 Score=287.47 Aligned_cols=217 Identities=28% Similarity=0.442 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEECCCc----cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------
Q 024738 32 VAIECSNLNYSITKKQ----RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~----~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------- 99 (263)
+.|+++|++|.|..+. ...+.+++.|||++++|+.+||+|.||||||||.|+|+|+++|++|+|.+++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 3689999999885431 1124689999999999999999999999999999999999999999999975
Q ss_pred -----ceEEEecCCCCccccc-CHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMP-TVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~-tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr 171 (263)
+|-++||+|+..+... .+.+-+..+++. ..+..+...+++.+-|+.+||- +..+-++.-||.||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 4789999997554321 333333444432 2455666677888999999985 7889999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|+++|.||..++||...+.++.+++.++.. +.|.+.|+|+.++..++ ++|.|+||+.|++++.|++.++++.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQe-k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHH-HhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 99999999999999999999999999999999865 46899999999999997 6999999999999999999999875
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-42 Score=290.80 Aligned_cols=155 Identities=31% Similarity=0.382 Sum_probs=136.3
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-ceEEEecCCCCccccc
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-PKSFVFQNPDHQVVMP 115 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-~~~~v~q~~~~~~~~~ 115 (263)
.||+++|+++ .+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 4 ~~l~~~~~~~-----~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------ 71 (177)
T cd03222 4 PDCVKRYGVF-----FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------ 71 (177)
T ss_pred CCeEEEECCE-----EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------
Confidence 5899999763 588884 99999999999999999999999999999999999999987 4788887542
Q ss_pred CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 024738 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~ 195 (263)
||+|||||++|||||+.+|+++||||||++||+.++.
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe--cChhhHH
Q 024738 196 GVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ--ADGVSIL 247 (263)
Q Consensus 196 ~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~--g~~~~~~ 247 (263)
.+.+.+.+++++ .+.|||++||+++++. .||++++|+++-.+.. |.|....
T Consensus 109 ~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 109 NAARAIRRLSEE-GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHHHHHHHHc-CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999998653 2379999999999985 7999999998766544 6665443
No 336
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.4e-42 Score=342.57 Aligned_cols=192 Identities=26% Similarity=0.403 Sum_probs=161.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.+|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 450 ~~i~~~nv~~~~~~~----~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~ 525 (659)
T TIGR00954 450 NGIKFENIPLVTPNG----DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY 525 (659)
T ss_pred CeEEEEeeEEECCCC----CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC
Confidence 379999999999642 2599999999999999999999999999999999999999999999853 6899999985
Q ss_pred CcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCCcccCCCC---------CCCChHHHHHHHHHHHHhhCCCE
Q 024738 110 HQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMSNYLQRPV---------QTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~~p~l 179 (263)
. +..|+++|+.++....... ....++++.++++.+++.+..+++. .+||||||||++|||||+++|++
T Consensus 526 l--~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i 603 (659)
T TIGR00954 526 M--TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF 603 (659)
T ss_pred C--CCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 3 3349999998764211110 1112345678899999987666543 79999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
+||||||++||+.+++.+.+.+++. |.|+|++||+++.++.||++++|+.
T Consensus 604 llLDEpts~LD~~~~~~l~~~l~~~-----~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 604 AILDECTSAVSVDVEGYMYRLCREF-----GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999888752 5799999999999999999999963
No 337
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=331.15 Aligned_cols=203 Identities=34% Similarity=0.452 Sum_probs=170.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~ 110 (263)
+|+++|++++|+++ ++|+++||+|.+|+.+||||+||||||||||+|+|...|++|+|.+.+ +++|+.|++..
T Consensus 3 ~i~~~~ls~~~g~~-----~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~ 77 (530)
T COG0488 3 MITLENLSLAYGDR-----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPL 77 (530)
T ss_pred eEEEeeeEEeeCCc-----eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCc
Confidence 79999999999764 699999999999999999999999999999999999999999999987 69999999864
Q ss_pred cccccCHHHHHHhhccCC-C-----------------------------CChHHHHHHHHHHHHHcCCCcccCCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNL-N-----------------------------LTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 160 (263)
... .||.+.+..+.... . +...+.+.++..++..+|+... ++++.+||
T Consensus 78 ~~~-~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 78 DPE-KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred CCC-ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 332 27877665442110 0 0001123566778888899877 99999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEE
Q 024738 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVM 239 (263)
Q Consensus 161 gGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~ 239 (263)
||||.||+||+||+.+|++||||||||+||..+..++.+.|.++ .| |+|+||||.+++. .|++|+.++.|++..
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~ 230 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELDRGKLTP 230 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence 99999999999999999999999999999999999999999875 35 9999999999995 799999999999865
Q ss_pred e-cChhhHH
Q 024738 240 Q-ADGVSIL 247 (263)
Q Consensus 240 ~-g~~~~~~ 247 (263)
+ |.-+...
T Consensus 231 y~Gny~~~~ 239 (530)
T COG0488 231 YKGNYSSYL 239 (530)
T ss_pred ecCCHHHHH
Confidence 4 4444433
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.9e-42 Score=336.58 Aligned_cols=195 Identities=26% Similarity=0.362 Sum_probs=170.8
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcCc----------eEEEecCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRP----------KSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~~----------~~~v~q~~~~~~~~~tv 117 (263)
+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+++. ++|++|++..... .||
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~-lTV 116 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT-LTV 116 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc-CcH
Confidence 57999999999999999999999999999999999999885 799999763 5999999864333 399
Q ss_pred HHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCC------CCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 024738 118 EADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQ------TLSGGQKQRVAIAGALAEACKVLLLDELTTF 188 (263)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqRv~lAral~~~p~llllDEPts~ 188 (263)
+||+.++.... ....++..++++++++.+||.+..+..++ .||||||||++|||+|+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 99999875432 23445566788999999999988888776 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-hh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-EL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 189 LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||+.++..+++.|++++++ |+|||+++|++. .+ +.||++++|++|++++.|+++++.+
T Consensus 197 LD~~~~~~l~~~L~~l~~~--g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQK--GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred hhHHHHHHHHHHHHHHHhC--CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999998753 689999999996 44 7899999999999999999988754
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.5e-42 Score=358.89 Aligned_cols=209 Identities=27% Similarity=0.327 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC---------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR--------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~--------- 99 (263)
.+++++||++.|+.+. ..+++|+|||+++++|++++|+|||||||||||++|+|+.+ |++|+|.+++
T Consensus 758 ~~l~~~nl~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCC-CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 3689999999996321 12469999999999999999999999999999999999997 7899999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCC----CCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQ----TLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LSgGqkqRv~lAra 172 (263)
.++|++|++.... ..||+||+.+..... ..+.++..++++++++.++|.+..++.++ .||||||||++||+|
T Consensus 837 ~i~yv~Q~~~~~~-~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLP-TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCC-CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 3799999875333 349999999864322 23444556778999999999988888887 799999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeCC-EEEEecChh
Q 024738 173 LAEACK-VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMEDG-KIVMQADGV 244 (263)
Q Consensus 173 l~~~p~-llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~G-~i~~~g~~~ 244 (263)
|+.+|+ +|||||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.+|++++|++| ++++.|++.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~--g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH--GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999997 99999999999999999999999998653 6899999999986 3 679999999997 999999874
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.8e-42 Score=360.61 Aligned_cols=200 Identities=27% Similarity=0.320 Sum_probs=171.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+... .++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+++
T Consensus 1217 ~I~f~nVs~~Y~~~~---~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG---RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred eEEEEEEEEEeCCCC---cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 699999999997532 369999999999999999999999999999999999996 899999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL-----------QRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~ 168 (263)
+++|+||+|.. +..|+++|+.... ..+ ++++.++++.+++.+.. ......||||||||++
T Consensus 1293 ~is~IpQdp~L--F~GTIR~NLdp~~---~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1293 AFGVIPQKVFI--FSGTFRKNLDPYE---QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC 1363 (1490)
T ss_pred ceEEEeCCCcc--CccCHHHHhCccc---CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH
Confidence 48999999853 4569999996421 122 34455677777665433 2233579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|+|||||||||+||+.+...+.+.|++.. +++|||+|||+++.+..||+|++|++|+|++.|++.++++
T Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~---~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF---SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999864 2589999999999998899999999999999999999985
No 341
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.9e-42 Score=361.54 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=170.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-GHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-G~I~~~~~~~~v~q~~~~~ 111 (263)
.++++|++|+|+... ..++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+++.++|++|+|..
T Consensus 614 ~I~~~nvsf~y~~~~--~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~L- 690 (1622)
T PLN03130 614 AISIKNGYFSWDSKA--ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI- 690 (1622)
T ss_pred ceEEEeeEEEccCCC--CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCcccc-
Confidence 699999999997421 1369999999999999999999999999999999999999999 999999999999999853
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+..|++||+.|+.. .+. ++..++++.++|.+ ........||||||||++||||++.+|+++
T Consensus 691 -fngTIreNI~fg~~---~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il 762 (1622)
T PLN03130 691 -FNATVRDNILFGSP---FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY 762 (1622)
T ss_pred -CCCCHHHHHhCCCc---ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 44599999998742 222 23344455444432 334456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIE-AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~-~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+||+...+.+.+ .+.... +++|+|+|||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 763 LLDEptSALD~~~~~~I~~~~l~~~l---~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 763 IFDDPLSALDAHVGRQVFDKCIKDEL---RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EECCCccccCHHHHHHHHHHHhhHHh---cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999888765 455443 25799999999999999999999999999999999988753
No 342
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-42 Score=281.18 Aligned_cols=215 Identities=27% Similarity=0.388 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
|.+++.++++.|+.. .-.+||||++.|||+.+|+|+|||||||||+||++-+.|+.|+|.+.-
T Consensus 5 PLL~V~~lsk~Yg~~-----~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 5 PLLSVSGLSKLYGPG-----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred cceeehhhhhhhCCC-----cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 579999999999874 368999999999999999999999999999999999999999998842
Q ss_pred ----------ceEEEecCCCCccccc-CHHHHH-----HhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 100 ----------PKSFVFQNPDHQVVMP-TVEADV-----AFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~-tv~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
.-|||.|+|..-..+. +...|+ +.+...+ ..+++.+.+|++++.++ ...+..|..+|||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 2589999986433322 222232 2222222 24566788999999997 5678899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
|+||+.|||-|+..|+++++||||.|||...+..++++++.+..+ -+..++|||||+..+. .+||.++|++|++++.|
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~-l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh-cCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999999875 4789999999999997 59999999999999999
Q ss_pred ChhhHHhhhhhhhhh
Q 024738 242 DGVSILNFIKSRQSS 256 (263)
Q Consensus 242 ~~~~~~~~~~~~~~~ 256 (263)
-++.++....+-++.
T Consensus 235 LTDrvLDDP~hPYTQ 249 (258)
T COG4107 235 LTDRVLDDPHHPYTQ 249 (258)
T ss_pred cccccccCCCCchHH
Confidence 998888764444443
No 343
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.6e-41 Score=359.32 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=172.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
.++++|++++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.++|++|+|..
T Consensus 636 ~i~~~~~~~~~~~~~---~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l-- 710 (1522)
T TIGR00957 636 SITVHNATFTWARDL---PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI-- 710 (1522)
T ss_pred cEEEEEeEEEcCCCC---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc--
Confidence 699999999997531 369999999999999999999999999999999999999999999999999999999853
Q ss_pred cccCHHHHHHhhccCCCCChHHHHHHHH--HHHHHcC-----CCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 113 VMPTVEADVAFGLGNLNLTHDEVRSKVA--KALDAVG-----MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~-----l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
+..|+++|+.++.. .+.+...+.++ ++.+.++ .+...+.++.+||||||||++||||++.+|+++|||||
T Consensus 711 ~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 711 QNDSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred cCCcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 34599999998642 22222222111 1122222 22345677899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|++||+...+.+.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999865311113579999999999998899999999999999999988865
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.3e-41 Score=284.35 Aligned_cols=156 Identities=28% Similarity=0.345 Sum_probs=129.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
+++|+|+||+|++|++++|+||||||||||||++. +++|+|.+.+....... .++.+ .
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~------------~~~~~------~ 65 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSR------------NKLIF------I 65 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccccc------------ccEEE------E
Confidence 46999999999999999999999999999999985 37899987643210000 00100 0
Q ss_pred ChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 024738 131 THDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEA--CKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~ 207 (263)
. + .++++.+++.. .+++++.+||+|||||++|||||+.+ |+++||||||++||+.+++.+.+.|+++++
T Consensus 66 ~-q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~- 137 (176)
T cd03238 66 D-Q------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID- 137 (176)
T ss_pred h-H------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 0 0 35788999986 48899999999999999999999999 999999999999999999999999999854
Q ss_pred CCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 208 SGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 208 ~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
.|.|||++||+++++..||++++|.+|+.
T Consensus 138 -~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 138 -LGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred -CCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 36899999999998888999999977554
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-42 Score=287.86 Aligned_cols=211 Identities=32% Similarity=0.458 Sum_probs=177.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
|+++.|+.+.|.+.....+++|+++||+|++|+++.|+|.||||||||+++|+|-+.|++|+|.+++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 5678899988876655567899999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccc-cCHHHHHHhhccC---CCCCh---HHHHHHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVM-PTVEADVAFGLGN---LNLTH---DEVRSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~-~tv~~~~~~~~~~---~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++-|||+|..-... .|+.||+.++... +++.. ...++...+.+..+ |+++.++.++.-|||||||-++|+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 267899998533222 2999999886432 23322 22233444556665 567899999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
+|.++.|++|+|||-|++|||.....+++.-.++.++ .+.|.+||||+++.+ .+.+|.++|++|+|+.+-..+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~-~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE-HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh-cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 9999999999999999999999999999999998875 468999999999996 899999999999999876543
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-41 Score=357.78 Aligned_cols=203 Identities=25% Similarity=0.361 Sum_probs=168.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH-VYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~-I~~~~~~~~v~q~~~~~ 111 (263)
.++++|++|+|+.+. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|. +.+++.++|++|+|..
T Consensus 614 ~I~~~~vsF~y~~~~--~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~L- 690 (1495)
T PLN03232 614 AISIKNGYFSWDSKT--SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWI- 690 (1495)
T ss_pred cEEEEeeEEEcCCCC--CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccc-
Confidence 599999999997521 136999999999999999999999999999999999999999975 4568899999999853
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+..|++||+.++.. .+.+ +..++++.+++. .........||||||||++||||++.+|+++
T Consensus 691 -f~gTIreNI~fg~~---~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 762 (1495)
T PLN03232 691 -FNATVRENILFGSD---FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762 (1495)
T ss_pred -ccccHHHHhhcCCc---cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 44599999998742 2333 333444444443 2333445689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~-l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+||+.+.+.+++. +.... +++|+|+|||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 763 LLDEptSaLD~~t~~~I~~~~l~~~l---~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDSCMKDEL---KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhh---cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999888765 44432 35799999999999999999999999999999999988753
No 347
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.5e-41 Score=313.19 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=174.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|.++++++.-++.+ +++++++||++.+||.+||+||||||||||.|+|.|..+|++|.|++++
T Consensus 334 ~L~Ve~l~~~PPg~~---~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 334 ALSVERLTAAPPGQK---KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred eeeEeeeeecCCCCC---CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 799999998765532 5899999999999999999999999999999999999999999999964
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK-----VAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
++||+||+.. .|..|+.|||.-+-. ..+.+.+.+. +.+++-++ |.+.....-...||||||||++||||
T Consensus 411 hiGYLPQdVe--LF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 411 HIGYLPQDVE--LFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred ccCcCcccce--ecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 6999999875 355699999964321 1223322221 22333333 44444555567999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|..+|.+++||||-|+||......+.+.|.+..+ +|.|+|+|||++..+..+|+|++|++|++...|+.++++.+
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~--rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA--RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH--cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999854 46899999999999999999999999999999999999875
No 348
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=280.77 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcCc---------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKRP--------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~~--------- 100 (263)
.+|+++||+.+..++ +.+|++|||+|++||+++|+||||||||||.++|+|.- ++++|+|.+++.
T Consensus 2 ~~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 2 MMLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred ceeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH
Confidence 379999999999763 25999999999999999999999999999999999975 779999999763
Q ss_pred -----eEEEecCCCCcccccCHHHHHHhhccCCCCC---hHHHHHHHHHHHHHcCCCc-ccCCCCC-CCChHHHHHHHHH
Q 024738 101 -----KSFVFQNPDHQVVMPTVEADVAFGLGNLNLT---HDEVRSKVAKALDAVGMSN-YLQRPVQ-TLSGGQKQRVAIA 170 (263)
Q Consensus 101 -----~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGqkqRv~lA 170 (263)
+...||.|...+.. ++.+.+..+.....-. ..+..+++.+.++.+++++ +++|.+. .+|||||+|..|+
T Consensus 78 RAr~GifLafQ~P~ei~GV-~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Eil 156 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGV-TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEIL 156 (251)
T ss_pred HHhcCCEEeecCCccCCCe-eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHH
Confidence 67889998644333 7777776654321111 2355678889999999985 7888885 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc--CCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.+++.+|++.|||||-||||..+-+.+.+.+.+++.. |.+++++||....+.+ .|+|.+|.+|+|+.+|.+ ++..
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~--~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE--GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC--CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 9999999999999999999999999999999999653 6899999999999975 599999999999999999 7776
Q ss_pred hhhhh
Q 024738 249 FIKSR 253 (263)
Q Consensus 249 ~~~~~ 253 (263)
..+..
T Consensus 234 ~le~~ 238 (251)
T COG0396 234 ELEEK 238 (251)
T ss_pred HHHHh
Confidence 54443
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.9e-40 Score=348.23 Aligned_cols=209 Identities=24% Similarity=0.316 Sum_probs=176.7
Q ss_pred eEEEEeEEEEECCCc--------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC---
Q 024738 33 AIECSNLNYSITKKQ--------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR--- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~--------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~--- 99 (263)
.+.++||++.+..+. .....+|+|+|+++++|++++|+||||||||||||+|+|..++ .+|+|.+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 699999999985321 0124699999999999999999999999999999999999763 789999875
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCC-----CCCChHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPV-----QTLSGGQK 164 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqk 164 (263)
.+||++|++..... .||+|++.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~-lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQ-VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred ChHHhhhheEEEccccccCCC-CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 26999998754333 39999998864321 2234455567889999999998888876 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeC-CEEEEec
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMED-GKIVMQA 241 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~-G~i~~~g 241 (263)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.||++++|++ |++++.|
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~--g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 9999999999999999999999999999999999999998753 6899999999984 4 68999999996 8999999
Q ss_pred Chh
Q 024738 242 DGV 244 (263)
Q Consensus 242 ~~~ 244 (263)
++.
T Consensus 1104 ~~~ 1106 (1470)
T PLN03140 1104 PLG 1106 (1470)
T ss_pred Ccc
Confidence 863
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.6e-41 Score=331.20 Aligned_cols=201 Identities=24% Similarity=0.269 Sum_probs=154.5
Q ss_pred CCcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEEcCceEEEe
Q 024738 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL---KPTNGHVYVKRPKSFVF 105 (263)
Q Consensus 29 ~~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I~~~~~~~~v~ 105 (263)
+...+|+++|++++|+++ ++|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|. |+.
T Consensus 173 ~~~~~I~i~nls~~y~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~------~~~ 241 (718)
T PLN03073 173 PAIKDIHMENFSISVGGR-----DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL------HVE 241 (718)
T ss_pred CCceeEEEceEEEEeCCC-----EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE------EEe
Confidence 345589999999999753 5999999999999999999999999999999999964 46777764 444
Q ss_pred cCCCCcccccCHHHH---------------HHhhc-----------------cCCCCChH-------------------H
Q 024738 106 QNPDHQVVMPTVEAD---------------VAFGL-----------------GNLNLTHD-------------------E 134 (263)
Q Consensus 106 q~~~~~~~~~tv~~~---------------~~~~~-----------------~~~~~~~~-------------------~ 134 (263)
|+... ...++.+. +.+.. ...+.+.. .
T Consensus 242 Q~~~g--~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 319 (718)
T PLN03073 242 QEVVG--DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT 319 (718)
T ss_pred ccCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcch
Confidence 43211 00121110 00000 00011111 2
Q ss_pred HHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 135 VRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 135 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
..+++.+++..+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.||
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~~tv 394 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----PKTF 394 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----CCEE
Confidence 234566778888886 5678899999999999999999999999999999999999999999999999886 3599
Q ss_pred EEEccCcchhh-cCCEEEEEeCCEEE-EecChhhHH
Q 024738 214 LWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSIL 247 (263)
Q Consensus 214 iivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
|+||||.+++. .||++++|++|++. +.|+..++.
T Consensus 395 iivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 395 IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999985 79999999999996 566665443
No 351
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-41 Score=309.82 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=177.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|.|... +++|+||||++.+|+.+||+||||+||||++|++..+...++|.|.+++
T Consensus 537 ~i~fsnvtF~Y~p~----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred eEEEEEeEEecCCC----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 69999999999764 4899999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH--HHHH-cCCC----cccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK--ALDA-VGMS----NYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~--~l~~-~~l~----~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.||.||||.. .+..|+.+|+.++- ...+.++..+.+.. +-++ +++. .....+.-.|||||||||||||+
T Consensus 613 ~IGVVPQDtv--LFNdTI~yNIryak--~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 613 SIGVVPQDTV--LFNDTILYNIRYAK--PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred hcCcccCcce--eecceeeeheeecC--CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 4899999875 34459999998863 23445555443332 2222 3343 33455667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
++++|.+++|||.||+||..+.+.+...|.++++ ++|-|+|.|++..+-.||.|+++++|+|++.|.++++.....+
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca---~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG 765 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCA---NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGG 765 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc---CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCC
Confidence 9999999999999999999999999999999985 4688999999999999999999999999999999999876333
Q ss_pred h
Q 024738 253 R 253 (263)
Q Consensus 253 ~ 253 (263)
.
T Consensus 766 ~ 766 (790)
T KOG0056|consen 766 A 766 (790)
T ss_pred c
Confidence 3
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-40 Score=268.84 Aligned_cols=156 Identities=38% Similarity=0.585 Sum_probs=128.6
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccc
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVM 114 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~ 114 (263)
+++|++++|.++ .+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|++++.- +.+.. .
T Consensus 1 ~~~~~~~~~~~~-----~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~--~~~~~-----~ 68 (157)
T cd00267 1 EIENLSFRYGGR-----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD--IAKLP-----L 68 (157)
T ss_pred CeEEEEEEeCCe-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE--cccCC-----H
Confidence 368999999753 59999999999999999999999999999999999999999999998631 11100 0
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
......+.+. . +||+||+||++||||++.+|++++|||||++||+.++
T Consensus 69 ~~~~~~i~~~-------~-------------------------qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 69 EELRRRIGYV-------P-------------------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred HHHHhceEEE-------e-------------------------eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 0000000000 0 0999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
..+.+.+.++... +.|+|++||+++++. .||++++|++|+
T Consensus 117 ~~l~~~l~~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 117 ERLLELLRELAEE--GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999998643 579999999999985 689999999875
No 353
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.3e-40 Score=346.56 Aligned_cols=190 Identities=28% Similarity=0.395 Sum_probs=158.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.++|++|+|..+ ..|+++|+.|+... .
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~--~~Ti~eNI~~g~~~---~ 514 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIM--PGTIKDNIIFGLSY---D 514 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccC--CccHHHHHHhcccc---c
Confidence 589999999999999999999999999999999999999999999999999999998643 34999999987421 2
Q ss_pred hHHHHHH-----HHHHHHHcCC--CcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHH
Q 024738 132 HDEVRSK-----VAKALDAVGM--SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKN 203 (263)
Q Consensus 132 ~~~~~~~-----~~~~l~~~~l--~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-l~~ 203 (263)
.....+. +.+.++.+.. ......++.+||||||||++||||++.+|+++||||||++||+..++.+++. +..
T Consensus 515 ~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~ 594 (1490)
T TIGR01271 515 EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594 (1490)
T ss_pred hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1111111 1122222221 2234567889999999999999999999999999999999999999999985 566
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+. +++|+|+|||+++.+..||++++|++|++++.|+++++.+.
T Consensus 595 ~~---~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 595 LM---SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred Hh---cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 53 25799999999999988999999999999999999988753
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.5e-40 Score=322.23 Aligned_cols=181 Identities=29% Similarity=0.345 Sum_probs=153.0
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------EcC-------
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----------VKR------- 99 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----------~~~------- 99 (263)
+++++|+.+ ..+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~----~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 78 EPVHRYGVN----GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred CceEEecCC----ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH
Confidence 379999753 24899999 9999999999999999999999999999999999996 543
Q ss_pred --------ceEEEecCCCCc--ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 --------PKSFVFQNPDHQ--VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 --------~~~~v~q~~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
++++.+|..... .+..|+.+++... +..+++.++++.++|...+++++.+|||||||||+|
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAI 223 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 135556543221 1223788877531 223567889999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCC
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDG 235 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G 235 (263)
|+||+.+|++|||||||++||+..+..+.+.|+++++ |.|||+||||++++. .||++++|+++
T Consensus 224 a~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999853 579999999999985 79999999863
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-39 Score=341.48 Aligned_cols=195 Identities=23% Similarity=0.253 Sum_probs=164.8
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEEcC------------ceEEEecCCCCcccc
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL----KPTNGHVYVKR------------PKSFVFQNPDHQVVM 114 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~~------------~~~~v~q~~~~~~~~ 114 (263)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.+++ .++|++|++.....+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 57999999965 279999987544333
Q ss_pred cCHHHHHHhhccCC-------CCChHHHHHH-HHHHHHHcCCCcccCCC-----CCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 115 PTVEADVAFGLGNL-------NLTHDEVRSK-VAKALDAVGMSNYLQRP-----VQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 115 ~tv~~~~~~~~~~~-------~~~~~~~~~~-~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+|++.++.... +...++..++ ++++++.+||++..+++ +..|||||||||+||+||+.+|++++
T Consensus 154 -TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 154 -TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred -CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 9999998864321 1233333333 45689999998776654 57899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc-chh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL-EEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+|||+.++..+++.|++++++ .|+|||+++|++ +.+ +.+|++++|++|++++.|+++++.
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~-~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANI-LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999998753 368999999997 455 689999999999999999998763
No 356
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.4e-39 Score=342.77 Aligned_cols=191 Identities=28% Similarity=0.366 Sum_probs=160.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.++|++|+|.. +..|+++|+.++.. .
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l--~~~Tv~enI~~~~~---~ 747 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWI--MNATVRGNILFFDE---E 747 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCcc--CCCcHHHHHHcCCh---h
Confidence 368999999999999999999999999999999999999999999999999999999864 33599999988532 1
Q ss_pred ChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 131 THDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 131 ~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
..+...+ .+.+.++.+ |+....++++.+||||||||++|||||+.+|+++||||||++||+...+.+++.+..
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1111111 223345555 676677888999999999999999999999999999999999999998888775432
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
... .|+|+|++||+++.+..||+|++|++|++++.|+.+++.+
T Consensus 828 ~~~--~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 828 GAL--AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred Hhh--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 111 2689999999999998999999999999999999988765
No 357
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.2e-39 Score=279.44 Aligned_cols=184 Identities=25% Similarity=0.317 Sum_probs=134.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHH-HHHh--------------------CCCCCCceEEEEcC-ceEEEecCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLL-KVLA--------------------GLLKPTNGHVYVKR-PKSFVFQNP 108 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~i~--------------------Gl~~p~~G~I~~~~-~~~~v~q~~ 108 (263)
.++|+++||+|++||+++|+||||||||||+ .++. .+..|..+++ .+ ...+..|++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 85 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSI--EGLSPAIAIDQK 85 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccc--cCCCceEEecCC
Confidence 4699999999999999999999999999996 3332 1122222221 11 233444443
Q ss_pred CCccc-ccCHH---HHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC--CEEE
Q 024738 109 DHQVV-MPTVE---ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC--KVLL 181 (263)
Q Consensus 109 ~~~~~-~~tv~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p--~lll 181 (263)
..... ..++. +...+..... ......++ .++++.+++.+ ..++++.+|||||+||++|||||+.+| ++||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll 162 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV 162 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 21111 11322 2211111011 11122233 46899999986 589999999999999999999999998 5999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g 241 (263)
|||||++||+..+..+.+.|+++++ .|.|+|++|||++++.+||++++| ++|+|+++|
T Consensus 163 lDEPt~gLD~~~~~~l~~~l~~~~~--~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 163 LDEPSIGLHPRDNDRLIETLKRLRD--LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHh--CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9999999999999999999999854 368999999999988899999999 999999876
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=259.32 Aligned_cols=192 Identities=28% Similarity=0.414 Sum_probs=166.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~---------- 99 (263)
++.++||+.+.+++ ..|-++||+|.+||++.|+||||||||||+..+.|.+.++ +|++.+++
T Consensus 2 ~l~l~nvsl~l~g~-----cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS-----CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecCCCc-----eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 68899999888775 4899999999999999999999999999999999999874 79999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
++|++||++.+++.+ +|.+|+.|++... ...+..++.+..++++.||+...++.|.+||||||-||++.|+|+.+|+
T Consensus 77 Rq~GiLFQD~lLFphl-sVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 77 RQIGILFQDALLFPHL-SVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred hheeeeeccccccccc-ccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 589999998765555 9999999876432 3334555677889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
.++||||+|.||..-+.++.+..-.-.+. -|..+|+||||.+.+..-.||+-|
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~-agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRA-AGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHh-cCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999877665443 478899999999998876777655
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=269.00 Aligned_cols=180 Identities=29% Similarity=0.428 Sum_probs=152.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------ 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~------------ 100 (263)
+++.+|++...+.. .++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|++.
T Consensus 2 ~L~a~~L~~~R~e~-----~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~ 76 (209)
T COG4133 2 MLEAENLSCERGER-----TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76 (209)
T ss_pred cchhhhhhhccCcc-----eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHH
Confidence 57889999887653 6999999999999999999999999999999999999999999999742
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
.-|+...+.....+ |+.||+.|.....+. .....+.++++.+||....+.++.+||.|||+||+|||-++..++++
T Consensus 77 l~yLGH~~giK~eL-Ta~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 77 LLYLGHQPGIKTEL-TALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHhhccccccchh-hHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 23444444433333 999999987554432 11345778999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
||||||++||..+...+-.++...+.+ +| .||.+||..-.+
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~-GG-iVllttHq~l~~ 193 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQ-GG-IVLLTTHQPLPI 193 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcC-CC-EEEEecCCccCC
Confidence 999999999999999999999987654 34 789999987654
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=303.67 Aligned_cols=203 Identities=32% Similarity=0.398 Sum_probs=172.1
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecC
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQN 107 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~ 107 (263)
....++++|+++.|++. .++++++||.|.+|+.+||+||||||||||||+|+|...|.+|+|.+.. ++||..|+
T Consensus 318 g~~vl~~~~~~~~y~~~----~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 318 GKLVLEFENVSKGYDGG----RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CCeeEEEeccccccCCC----ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh
Confidence 34689999999999764 3699999999999999999999999999999999999999999999876 48999998
Q ss_pred CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
........|+.+++.-..... ....+...|..|++. +...+++..||||||-|+.||+.++.+|.+|||||||
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDG------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred hhhcCccCcHHHHHHhhCccc------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 743323337888775432111 145677899999997 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe-cChhhHHh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ-ADGVSILN 248 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~~~~ 248 (263)
|.||..+++.+.+.|.++ .| |||+||||..+++ .|++++.+.+ ++... |..++..+
T Consensus 468 NhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 468 NHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred ccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999987 24 9999999999995 7999999998 66554 66555543
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.5e-39 Score=337.19 Aligned_cols=196 Identities=29% Similarity=0.440 Sum_probs=164.8
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC----------ceEEEecCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR----------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~----------~~~~v~q~~~~~~~~~tv 117 (263)
+++|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+++ .++|++|++.....+ ||
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l-TV 256 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM-TV 256 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcC-cH
Confidence 46999999999999999999999999999999999999998 99999975 379999987544333 99
Q ss_pred HHHHHhhccCCC----------CChHHH------------------------HHHHHHHHHHcCCCccc-----CCCCCC
Q 024738 118 EADVAFGLGNLN----------LTHDEV------------------------RSKVAKALDAVGMSNYL-----QRPVQT 158 (263)
Q Consensus 118 ~~~~~~~~~~~~----------~~~~~~------------------------~~~~~~~l~~~~l~~~~-----~~~~~~ 158 (263)
+|++.++....+ ...++. ...++++++.+||++.. ++.++.
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999988643221 011110 01246789999998644 567789
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-hh-hcCCEEEEEeCCE
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-EL-EYADGAFYMEDGK 236 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-~~-~~~d~v~~l~~G~ 236 (263)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++. .|+|+|+++|++. ++ +.+|+|++|++|+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~-~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL-TEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999998753 3689999999974 54 6899999999999
Q ss_pred EEEecChhhHHh
Q 024738 237 IVMQADGVSILN 248 (263)
Q Consensus 237 i~~~g~~~~~~~ 248 (263)
+++.|+.+++.+
T Consensus 416 ivy~G~~~~~~~ 427 (1470)
T PLN03140 416 IVYQGPRDHILE 427 (1470)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-38 Score=308.86 Aligned_cols=213 Identities=28% Similarity=0.431 Sum_probs=186.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---TNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~~~~---------- 99 (263)
.+.++|++....++....+++|+|||..+++||++||+||+||||||||++|+|.... .+|+|.+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 6889999988866422346799999999999999999999999999999999999874 789999987
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCC-----CCChHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQ-----TLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAr 171 (263)
..|||.|+....... ||+|.+.+.+..+ ..+.++.+++++++++.+||....|..++ .+||||||||+||.
T Consensus 105 ~s~yV~QdD~l~~~L-TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTL-TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred eeEEEcccccccccc-cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 269999997544433 9999998875432 23567788999999999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
-|+++|.+|++||||+|||.....++++.|++++++ |+|||++=|.+.. + ...|++++|.+|++++.|++.+..+
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~--grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS--GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC--CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999999999999999864 7899999999975 4 7899999999999999999986554
No 363
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=323.20 Aligned_cols=211 Identities=29% Similarity=0.370 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..+.++|+++.|+... .+++++||.|++||+.|++|+|||||||++|+|+|..+|++|++++.+
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~ 638 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence 4799999999998752 289999999999999999999999999999999999999999999954
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.+||.||.......+ |.+|.+.+.+...++...+..+.++.+++.++|.++++++++.||||+|+|+.+|.|++.+|
T Consensus 639 ~~~iGyCPQ~d~l~~~l-T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p 717 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEEL-TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDP 717 (885)
T ss_pred hhhcccCCchhhhhhhc-cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCC
Confidence 389999986544434 99999998887788888888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++|||||+|+||.+++.+++++.++.+. |+.||++||.+++++ .|||+.+|.+|++...|++.++.+.
T Consensus 718 ~vi~LDEPstGmDP~arr~lW~ii~~~~k~--g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 718 SVILLDEPSTGLDPKARRHLWDIIARLRKN--GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999998653 449999999999997 6999999999999999999988654
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=286.05 Aligned_cols=206 Identities=27% Similarity=0.441 Sum_probs=174.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------ 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~------------ 100 (263)
.+.++|++|.|... .++|+++||++++|+.++++||+|+||||+++++..++++.+|.|.++++
T Consensus 262 ~v~F~~V~F~y~~~----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 262 AVAFINVSFAYDPR----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred eEEEEEEEeecccc----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHH
Confidence 58999999999765 47999999999999999999999999999999999999999999999763
Q ss_pred -eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH-----HHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 101 -KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-----ALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 101 -~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
||.+||+.. .+..|...|+.++... .+.++....++. .++.+ |++.....+.-.|||||||||+|||+
T Consensus 338 aIg~VPQDtv--LFNDti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 338 AIGIVPQDTV--LFNDTIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HhCcCcccce--ehhhhHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 899999865 3445999999987432 334443322221 12221 33333445566899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++.+|++|+|||.||+||..+.+++...|++..+ |.|.+++.|++..+--||.|+||++|+|++.|++++++..
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~~---~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVSA---GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC---CCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999999999853 5799999999999999999999999999999999999876
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=257.81 Aligned_cols=199 Identities=29% Similarity=0.370 Sum_probs=167.3
Q ss_pred eEEEEeEEEEECCCccc--cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRK--LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~--~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.|.++|++|+|-=+..+ .-++++|+||+++.|||+++-||||||||||||++.|-+.|++|+|.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 68999999998533222 24799999999999999999999999999999999999999999999841
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 168 (263)
.+|||.|.-...+.. +..+-+.-++...+...+..+.++..++.++++. .++.-.|.++||||+|||.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV-~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRV-SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCc-chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 379999964322222 4445455554455777788888999999999997 5789999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeC
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMED 234 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~ 234 (263)
|||.++.+-++|||||||++||..++..+.++|.+.. ..|..+|=+-||-+.-+ .|||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K--a~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK--ARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHH--hcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999863 35789999999977754 7999988753
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.9e-37 Score=314.22 Aligned_cols=205 Identities=31% Similarity=0.407 Sum_probs=174.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
...++++|.+++.+.. ...+.|+||||+|++|+.+||+|+-|||||+||.+|.|-++..+|+|.++|.++|++|.|..
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 4579999999998763 22358999999999999999999999999999999999999999999999999999999853
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL-----------QRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
+..|++|||.|+.. ++ +++.++.++.+.|++.+ ..+.-+||||||||++||||+..++|+
T Consensus 594 --~ngTvreNILFG~~---~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 594 --QNGTVRENILFGSP---YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred --hCCcHHHhhhcCcc---cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 44599999999843 22 23344555555554322 345679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|||.|+|++|....+.+.+..-...- +++|+|+|||.++.++.||.|++|++|+|++.|+.+|+.+
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 999999999999999888876554322 3579999999999999999999999999999999999885
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-36 Score=310.03 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=175.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
-.|+++|++.+|..+. ..||+||||+|++||.+||||..|||||||+.+|..+..|.+|+|.|++
T Consensus 1137 G~I~f~~~~~RYrp~l---p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNL---PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CeEEEEEeEEEeCCCC---cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 3799999999997642 4799999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv 167 (263)
+++.+||+|. .|..|++.|+.= +. ..++++ +-++|+..+|. .....-..++|-||||.+
T Consensus 1214 srlsIIPQdPv--LFsGTvR~NLDP-f~--e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1214 SRLSIIPQDPV--LFSGTVRFNLDP-FD--EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred hcCeeeCCCCc--eecCccccccCc-cc--ccCHHH----HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 5899999996 355699999742 11 223333 33445554443 333334468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+++.+||+|||+|+++|+.+-..+.+.|++..+ ++|||.+-|+++.+--||||+||++|++++.++|.+++
T Consensus 1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~---dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK---DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc---CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 999999999999999999999999999999999998654 58999999999999999999999999999999999999
Q ss_pred hhhhhh
Q 024738 248 NFIKSR 253 (263)
Q Consensus 248 ~~~~~~ 253 (263)
++..+.
T Consensus 1362 ~~~~S~ 1367 (1381)
T KOG0054|consen 1362 SDKDSL 1367 (1381)
T ss_pred hCCcch
Confidence 864433
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.3e-35 Score=259.57 Aligned_cols=183 Identities=27% Similarity=0.341 Sum_probs=137.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh--------CC--CCCCceEEEEc----CceEEEecCCCCcc------
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA--------GL--LKPTNGHVYVK----RPKSFVFQNPDHQV------ 112 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~--------Gl--~~p~~G~I~~~----~~~~~v~q~~~~~~------ 112 (263)
-|+|+|++|+.|.+++|+|+||||||||++.+. +. ..|..++.... ..+-+|.|.|....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998652 11 11322222110 11233444331100
Q ss_pred ---------------------------------------cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-cc
Q 024738 113 ---------------------------------------VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YL 152 (263)
Q Consensus 113 ---------------------------------------~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 152 (263)
...|+.+++.|.... .. ..++.++++.+||.. .+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-----~~-~~~~~~~L~~vgL~~l~l 163 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-----PK-IARKLQTLCDVGLGYIKL 163 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-----hh-HHHHHHHHHHcCCchhhh
Confidence 011444444332111 01 234567899999987 58
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEE
Q 024738 153 QRPVQTLSGGQKQRVAIAGALAEA---CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGA 229 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~~~---p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v 229 (263)
++++.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+.+.|+++.++ |.|||++||++++++.||++
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--g~tvIiitH~~~~i~~aD~i 241 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--GNTVVVIEHNLDVIKCADWI 241 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHhCCEE
Confidence 999999999999999999999996 7999999999999999999999999998643 67999999999998889999
Q ss_pred EEE------eCCEEEEecCh
Q 024738 230 FYM------EDGKIVMQADG 243 (263)
Q Consensus 230 ~~l------~~G~i~~~g~~ 243 (263)
++| ++|++++.|++
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEecCCcCCCCCEEEEeCCC
Confidence 999 89999999864
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=5.6e-35 Score=248.67 Aligned_cols=154 Identities=25% Similarity=0.396 Sum_probs=127.2
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce---------EEEEc----------CceEEEecCCCCccccc
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG---------HVYVK----------RPKSFVFQNPDHQVVMP 115 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G---------~I~~~----------~~~~~v~q~~~~~~~~~ 115 (263)
++++|++++| +++|+||||||||||+++|+|+++|..| ++.+. .+++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7899999999 9999999999999999999999876633 44432 2579999998644
Q ss_pred CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCH
Q 024738 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDE 191 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~ 191 (263)
++.. . .+++.++++. .+..++++.+||+|||||++||++++ .+|+++||||||++||+
T Consensus 89 -------~~~~----~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 89 -------YSII----S----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred -------eeEE----e----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 1110 0 2345566666 55678899999999999999999997 46799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
..+..+.+.|+++.+ +.|||++||+++.++.||+++.|..
T Consensus 151 ~~~~~l~~~l~~~~~---~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 151 ANVERFARLLKEFSK---ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHhcc---CCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999743 4799999999998889999999864
No 370
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.6e-36 Score=244.31 Aligned_cols=199 Identities=26% Similarity=0.364 Sum_probs=170.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
++.++||+..- -|-.+|..+..||++-++|||||||||||-.++|++ |-+|+|.+.|
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLAr 72 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELAR 72 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHH
Confidence 67888887652 477899999999999999999999999999999987 6899999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE---- 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~---- 175 (263)
+.+|+.|+....+.+ .|+..+.+. .+.++....+.++...+++++++.+...+|||||.|||-+|..++.
T Consensus 73 hRAYLsQqq~p~f~m-pV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 73 HRAYLSQQQTPPFAM-PVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred HHHHHhhccCCcchh-hhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 357888876544333 677766553 2235556677888999999999999999999999999999988763
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-hhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ---ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ---~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
..++||+|||.++||...+..+..+|.+++.. |.+|||++||++- ++.||+++.++.|++...|..++++.+
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~--G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC--CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 44799999999999999999999999999864 7899999999996 689999999999999999999999875
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.5e-34 Score=230.87 Aligned_cols=120 Identities=41% Similarity=0.674 Sum_probs=103.3
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ceEEEecCCCCcccccCHHHH
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PKSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~~~ 120 (263)
|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ .++|++|++.... ..|+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP-GLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT-TSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 6899999999999999999999999999999999999999999974 4899999864333 2378887
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC----CCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV----QTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
...+++.++++.+++.+..++.+ .+||+|||||++|||||+.+|+++|||||||
T Consensus 80 -------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23455778888888766555555 9999999999999999999999999999997
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=2.7e-33 Score=240.84 Aligned_cols=182 Identities=25% Similarity=0.266 Sum_probs=136.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEe-CCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEEc------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGL-LKPTNGHVYVK------------ 98 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~-~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~------------ 98 (263)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++. +-+..+.....
T Consensus 5 ~i~l~nf~-~y~~~--------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~ 75 (213)
T cd03279 5 KLELKNFG-PFREE--------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDT 75 (213)
T ss_pred EEEEECCc-CcCCc--------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCcc
Confidence 58899998 66432 56667654 5899999999999999999999964 33443433321
Q ss_pred CceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh---
Q 024738 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--- 175 (263)
Q Consensus 99 ~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--- 175 (263)
..++++||++.... ++.. ..+.+.++..+.+ .+...++.+.+++++.+||+||+||++|||||+.
T Consensus 76 ~~v~~~f~~~~~~~---~~~r-------~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~ 143 (213)
T cd03279 76 AEVSFTFQLGGKKY---RVER-------SRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEV 143 (213)
T ss_pred EEEEEEEEECCeEE---EEEE-------ecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHH
Confidence 24788888764322 1111 1133333332211 2455567778899999999999999999999985
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 176 -------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 176 -------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
+|+++||||||++||+..+..+.+.|.+++++ +.|+|++||+++++. .||+++++++|.+
T Consensus 144 ~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~--~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 144 LQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE--NRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 57899999999999999999999999998542 679999999999884 7999999999864
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=258.73 Aligned_cols=204 Identities=24% Similarity=0.379 Sum_probs=174.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---------- 100 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~---------- 100 (263)
.+.++++|++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|.++++
T Consensus 261 ~~~l~v~~l~~~~---------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 261 EPVLEVRNLSGGG---------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred CcEEEEecCCCCC---------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 4579999997541 479999999999999999999999999999999999999999999863
Q ss_pred ----eEEEecCCCCcc--cccCHHHHHHhh-ccC---C-CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHH
Q 024738 101 ----KSFVFQNPDHQV--VMPTVEADVAFG-LGN---L-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 101 ----~~~v~q~~~~~~--~~~tv~~~~~~~-~~~---~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 168 (263)
++|++.|....- ...++.+|+.++ +.. . -.+....++.+.++.+.+++. ...++++.+||||.+|||.
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 799998854222 223999998776 211 1 133444456788899999996 5577999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|||.|+.+|++|||||||.|+|.-++.+++++|++++++ |++||++|-++.++ ..||||+||++|+++..-+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~--G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE--GKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC--CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999999864 78999999999997 6899999999999998766655
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=1.1e-32 Score=240.81 Aligned_cols=185 Identities=23% Similarity=0.252 Sum_probs=119.1
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh----------------CCCCCCce----
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA----------------GLLKPTNG---- 93 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~----------------Gl~~p~~G---- 93 (263)
|+++|.. +|++. .++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nfk-sy~~~-----~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~ 72 (243)
T cd03272 4 VIIQGFK-SYKDQ-----TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVM 72 (243)
T ss_pred EEEeCcc-CcccC-----cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCc
Confidence 5666653 45442 4777876 7899999999999999999998 44445455
Q ss_pred ----EEEEcC----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH--HHHHHHHHHcCCCcc
Q 024738 94 ----HVYVKR----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--SKVAKALDAVGMSNY 151 (263)
Q Consensus 94 ----~I~~~~----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~ 151 (263)
+|.+++ .+++++|+........+..+...+ +...++...... ....++.+.+++.+.
T Consensus 73 ~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~-l~~~gl~~~~~~~~~~qg~i~~l~~l~~~ 151 (243)
T cd03272 73 SAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNL-LESAGFSRSNPYYIVPQGKINSLTNMKQD 151 (243)
T ss_pred eEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHH-HHHcCCCCCCCcEEEEcCchHHhhhcccc
Confidence 222211 123333322111101122222111 111111110000 000012222344445
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
.++++.+||||||||++|||||+. +|+++|+||||++||+.+++.+++.|+++.+ +.+||++||+.+..+.||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---~~~ii~~~h~~~~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---GAQFITTTFRPELLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHhhCC
Confidence 678899999999999999999974 5899999999999999999999999999743 468888898877668999
Q ss_pred EEEEEe
Q 024738 228 GAFYME 233 (263)
Q Consensus 228 ~v~~l~ 233 (263)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999985
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=8.9e-33 Score=243.15 Aligned_cols=167 Identities=25% Similarity=0.311 Sum_probs=128.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcC----------------ceEEEecCCCCc------cc--ccCHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKR----------------PKSFVFQNPDHQ------VV--MPTVE 118 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~----------------~~~~v~q~~~~~------~~--~~tv~ 118 (263)
..+++|+||||||||||+++|++++.|+ .|++++.+ .+++++|++... .. ..+|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 35665521 478999986321 00 11555
Q ss_pred HHHHhhccCCC-C-ChHHHHHHHHHHHHHcCCC--------------------cccCCCCCCCChHHHHHHHHHHHHh--
Q 024738 119 ADVAFGLGNLN-L-THDEVRSKVAKALDAVGMS--------------------NYLQRPVQTLSGGQKQRVAIAGALA-- 174 (263)
Q Consensus 119 ~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~--------------------~~~~~~~~~LSgGqkqRv~lAral~-- 174 (263)
+++..+..... . ......+++.++++.+++. +..++++.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 55443321110 1 1223346788899999986 4456889999999999999999998
Q ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 175 --EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 175 --~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.+|+++|+||||++||+..+..+.+.|+++. + |.|+|++||+.+.++.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~--g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K--GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C--CCEEEEEECCHHHHHhCCEEEEEE
Confidence 5789999999999999999999999999874 2 579999999977778999998775
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=259.91 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=163.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.+.+.++|++|.|.++. .++++++|-|..++.+++|||||||||||||+++|.+.|+.|.|.-.. ++++.-|..
T Consensus 387 ~pvi~~~nv~F~y~~~~----~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~ 462 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP----MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHL 462 (614)
T ss_pred CCeEEEeccccCCCCcc----hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhh
Confidence 46899999999998652 589999999999999999999999999999999999999999997543 344444543
Q ss_pred CCccccc-CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 109 DHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 109 ~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
.....+. +..+++.-.+. .....+.+..++.++||+ +....++.+||.|||.||++|+.++.+|.+|||||||
T Consensus 463 ~e~ldl~~s~le~~~~~~~-----~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFP-----DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred HhhcCcchhHHHHHHHhcc-----ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 2222222 55555432221 112245677899999998 6678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE-EecChhhHH
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSIL 247 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
++||..+...+.+.|.++ .| ++|+||||..++. +++++++..+|.+. ..|+.....
T Consensus 538 nhLDi~tid~laeaiNe~----~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINEF----PG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred cCCCchhHHHHHHHHhcc----CC-ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 999999999999999886 23 7899999999985 79999999998875 456655443
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=3.1e-33 Score=240.56 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=133.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
.|+++|.. +|++. .++++++| ++++|+||||||||||+++|.-..-.+.... -.+++++++|....+.
T Consensus 5 ~l~l~nfk-~~~~~-----~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 5 KLVLENFK-SYAGE-----QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHP 72 (212)
T ss_pred EEEEECcc-cCCCC-----eeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCC
Confidence 47888886 67653 58999988 8999999999999999999983211110011 0135777887754332
Q ss_pred cccCHHHHHHhhccC--------CCCChHHHHH--HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----CCC
Q 024738 113 VMPTVEADVAFGLGN--------LNLTHDEVRS--KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE----ACK 178 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~--------~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~ 178 (263)
.. ++.+.+.+.... .+...+.... ...++++.+++.+..++++..||+|||||++||||++. +|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 73 NL-DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred CC-ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 22 444443332211 1111111000 01455677788888888999999999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
+++|||||+|||+.++..+++.++++.+ +.|+|++||+.+..+.||++++|..
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~---~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTK---NAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcC---CCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999999999999999999999742 3589999999766689999999964
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=1.1e-30 Score=274.20 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=155.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHH---------HHhCCCCC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK---------VLAGLLKP------------- 90 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk---------~i~Gl~~p------------- 90 (263)
.|++++++. ..|+|+||+|++||+++|+|+||||||||++ .+.|...+
T Consensus 600 ~L~l~~~~~----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi 669 (1809)
T PRK00635 600 TLTLSKATK----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLV 669 (1809)
T ss_pred eEEEecccc----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeE
Confidence 688888762 2699999999999999999999999999999 56665322
Q ss_pred -----------CceEEEEcC---------------------ceEEEecC------------------CCC----------
Q 024738 91 -----------TNGHVYVKR---------------------PKSFVFQN------------------PDH---------- 110 (263)
Q Consensus 91 -----------~~G~I~~~~---------------------~~~~v~q~------------------~~~---------- 110 (263)
-++.+++-+ ...|.|+. +..
T Consensus 670 ~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~Gk 749 (1809)
T PRK00635 670 HITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGK 749 (1809)
T ss_pred EecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCc
Confidence 122233100 01122321 000
Q ss_pred ---------cccccCHHHHHHhhcc---CCCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHh---
Q 024738 111 ---------QVVMPTVEADVAFGLG---NLNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALA--- 174 (263)
Q Consensus 111 ---------~~~~~tv~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~--- 174 (263)
.....|+.|++.++.. ......++..+++ ++++.+||... +++++.+|||||+||++|||||+
T Consensus 750 Ry~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~ 828 (1809)
T PRK00635 750 RFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPS 828 (1809)
T ss_pred ccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcC
Confidence 0011277777766532 1112234455566 58899999876 79999999999999999999998
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe------CCEEEEecChhhHHh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME------DGKIVMQADGVSILN 248 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 248 (263)
.+|++|||||||+|||+..+..+++.|+++.++ |.|||++||+++.++.||++++|. +|++++.|+++++..
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~--G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ--GHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 699999999999999999999999999998643 689999999999998899999996 799999999999875
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=1.7e-30 Score=262.41 Aligned_cols=119 Identities=29% Similarity=0.383 Sum_probs=106.3
Q ss_pred HHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 024738 139 VAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214 (263)
Q Consensus 139 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tii 214 (263)
..+.++.+||.. .+++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.|+++.+ .|.|||
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~--~G~TVI 887 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD--KGNTVV 887 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEE
Confidence 356788999986 579999999999999999999999999 99999999999999999999999999864 367999
Q ss_pred EEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 215 WVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 215 ivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
++||+++.+..||++++| ++|++++.|+++++.....+....|+.
T Consensus 888 iitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~ 938 (943)
T PRK00349 888 VIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLK 938 (943)
T ss_pred EEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHH
Confidence 999999999889999999 799999999999998765555556654
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=3.8e-31 Score=226.25 Aligned_cols=159 Identities=25% Similarity=0.343 Sum_probs=124.2
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHh----CCCCCCceEEEEc----------CceEEEecCCCCcccc----cCH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLA----GLLKPTNGHVYVK----------RPKSFVFQNPDHQVVM----PTV 117 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~----Gl~~p~~G~I~~~----------~~~~~v~q~~~~~~~~----~tv 117 (263)
..++++.+| +++|+||||||||||+++|. |...|++|.+..+ ..++++||++....+. .++
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344667787 99999999999999999994 9999988865421 1478899987211111 177
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR------VAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR------v~lAral~~~p~llllDEPts~LD~ 191 (263)
.+|+.+. ... .+.+.+ ++++.+||+||+|| ++||||++.+|+++|+||||++||+
T Consensus 94 ~~~~~~~------~~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 94 LENVIFC------HQG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred hhceeee------chH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 7776542 111 122222 77899999999996 7899999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCC
Q 024738 192 SDQF-GVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235 (263)
Q Consensus 192 ~~~~-~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G 235 (263)
..+. .+.++|.++.++ .+.|||++||+++.+..||+++.|.+.
T Consensus 155 ~~~~~~l~~~l~~~~~~-~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 155 ENIEESLAEIIEERKSQ-KNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred HHHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 9999 999999998543 257999999999988889999999643
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=249.55 Aligned_cols=202 Identities=25% Similarity=0.375 Sum_probs=150.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
-+.++|+++.|.+. .+++|++|++.+|+.|||+|+|||||||+|++|+|-..|..-++-+- .+.++.....
T Consensus 75 dvk~~sls~s~~g~-----~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y----~ls~e~~ps~ 145 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV-----ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY----LLSREIEPSE 145 (614)
T ss_pred cceeeeeeeccCCc-----eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh----hhcccCCCch
Confidence 59999999999763 69999999999999999999999999999999999998876555331 1111100000
Q ss_pred cccCHH-----------------HHHHhhccC-------------CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCCh
Q 024738 113 VMPTVE-----------------ADVAFGLGN-------------LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161 (263)
Q Consensus 113 ~~~tv~-----------------~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 161 (263)
..++. |.+.-.... ...+.+....++.++|..+|.. +..++++..|||
T Consensus 146 -~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 -KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred -HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 00000 000000000 0112233345566677777764 678899999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE-EEE
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK-IVM 239 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~-i~~ 239 (263)
|++.|++|||||..+|++|||||||++||+++..++-+.|.++- . .++|+++|+.+++. .|..|+.|++++ +.+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~-~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---R-IILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---C-ceEEEEecchhhhhhHhhhhheecccceeee
Confidence 99999999999999999999999999999999999999998862 1 28999999999995 899999999999 455
Q ss_pred ecChhhHHh
Q 024738 240 QADGVSILN 248 (263)
Q Consensus 240 ~g~~~~~~~ 248 (263)
.|+.+....
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 666655443
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=8.8e-31 Score=250.80 Aligned_cols=190 Identities=26% Similarity=0.387 Sum_probs=159.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
...|+++|++..-+..+ ..+++.||++++|+.+.|.||||||||||+|+|+|+-+--+|+|.+.. .+-|+||.|
T Consensus 390 ~~~i~~~nl~l~~p~~~----~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P 465 (604)
T COG4178 390 DHGITLENLSLRTPDGQ----TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465 (604)
T ss_pred cceeEEeeeeEECCCCC----eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC
Confidence 46899999999987653 689999999999999999999999999999999999999999998863 378999988
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCC------CCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR------PVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
. +...|.++-+.++......+ ++.+.++|.++||.++.++ --..||+|||||+++||.|+++|++++|
T Consensus 466 Y--~p~GtLre~l~YP~~~~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~L 539 (604)
T COG4178 466 Y--LPQGTLREALCYPNAAPDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFL 539 (604)
T ss_pred C--CCCccHHHHHhCCCCCCCCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEE
Confidence 4 34459999998875443233 3456678888988754432 2368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
||.|++||+.+...+++.+++.+ .++|||-|+|......+.++.+-+.
T Consensus 540 DEATsALDe~~e~~l~q~l~~~l---p~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 540 DEATSALDEETEDRLYQLLKEEL---PDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ecchhccChHHHHHHHHHHHhhC---CCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999998854 3589999999998877666655443
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.5e-31 Score=222.76 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=173.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----Ec---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VK--------- 98 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----~~--------- 98 (263)
.|.+.|++..+...+ +...+++++|++++.||+-|++|++|||||-..|+|+|..+- +=.|+ ++
T Consensus 3 LLDIrnL~IE~~Tsq-G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQ-GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCC-CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCCh
Confidence 577889998886543 346799999999999999999999999999999999998753 22332 21
Q ss_pred --------CceEEEecCCCCccccc-CHHHHHHhhccCCCC---Ch---HHHHHHHHHHHHHcCCCc---ccCCCCCCCC
Q 024738 99 --------RPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNL---TH---DEVRSKVAKALDAVGMSN---YLQRPVQTLS 160 (263)
Q Consensus 99 --------~~~~~v~q~~~~~~~~~-tv~~~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~---~~~~~~~~LS 160 (263)
..++++||+|....... ++...+.-....+.+ .. .-.++++.++|.++|+.+ .+..+|.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 24789999986544321 333333221111111 11 123567889999999974 5678999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEE
Q 024738 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVM 239 (263)
Q Consensus 161 gGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~ 239 (263)
-||-|+|.||.|++.+|++||.||||+++|+.++.+++.+|.++. +.+++||+++|||+..+ +.||++-||.-|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mN-Qn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLN-QNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhh-ccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 999999999999999999999999999999999999999999985 45689999999999998 5799999999999999
Q ss_pred ecChhhHHhhhhhhh
Q 024738 240 QADGVSILNFIKSRQ 254 (263)
Q Consensus 240 ~g~~~~~~~~~~~~~ 254 (263)
.++.+++.+..++-+
T Consensus 240 Sa~~e~l~~~PhHPY 254 (330)
T COG4170 240 SAPSEELVTMPHHPY 254 (330)
T ss_pred ccchhHHhcCCCCch
Confidence 999999887644433
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.9e-31 Score=240.09 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=156.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecC-CCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN-PDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~-~~~~ 111 (263)
.||++|+.|.|.... .-+..||++|++||++-|+|.||||||||+++++|+++|++|+|+++|+- |..+ +..+
T Consensus 322 ~lelrnvrfay~~~~----FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p--V~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA----FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--VSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc----ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc--CCCCCHHHH
Confidence 699999999997642 35789999999999999999999999999999999999999999999852 1111 1100
Q ss_pred -ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc---cCC--CCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 112 -VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY---LQR--PVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 112 -~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
..+.+|.....++-...+.......+.+..+++++.+.++ .+. .+..||.|||+|+++.-|++-+.+++++||=
T Consensus 396 R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 0111333333222112222221234567778888877543 233 3468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
-+--||.-++.+.+.+--+.++ .|+||+.+|||-.-...|||++.|++|++++..
T Consensus 476 AADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 476 AADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999988776654 589999999998888999999999999998764
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.97 E-value=4e-30 Score=236.10 Aligned_cols=189 Identities=30% Similarity=0.430 Sum_probs=151.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
..++-..+++.|++- .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+-+++|=||--...
T Consensus 341 ~lv~y~~~~k~~g~F------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~ 413 (591)
T COG1245 341 TLVEYPDLKKTYGDF------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPD 413 (591)
T ss_pred eeeecchheeecCce------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCC
Confidence 356666777777531 343334466778999999999999999999999999999998 5555789999964322
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+..||.+.+.-..... +... ....++++-++|++.+++++.+|||||.|||+||.||.++++++|||||++.||.
T Consensus 414 -~~gtV~~~l~~~~~~~-~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 414 -YDGTVEDLLRSAIRSA-FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred -CCCcHHHHHHHhhhhh-cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 3348988765432211 1111 1223678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc-CCEEEEEe
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYME 233 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~ 233 (263)
+.+..+.+.|+++... .++|.++|.||+-.+.+ +||+++++
T Consensus 489 EqR~~vakvIRR~~e~-~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 489 EQRIIVAKVIRRFIEN-NEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHhh-cCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999998764 46899999999999985 99999986
No 386
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.9e-31 Score=244.42 Aligned_cols=199 Identities=24% Similarity=0.275 Sum_probs=145.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---ce--EEEe
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---PK--SFVF 105 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---~~--~~v~ 105 (263)
+..|.+.+++..|+++ .+|++-++++..|..|||+|+||+|||||||+|+. |+|.... .+ -+++
T Consensus 78 ~~Di~~~~fdLa~G~k-----~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~ 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK-----ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE 146 (582)
T ss_pred ccceeeeeeeeeecch-----hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH
Confidence 4469999999999975 59999999999999999999999999999999998 4443321 00 1111
Q ss_pred cCCCCcccccCHHHHHHhhccCCCCChH-HHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNLTHD-EVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
.......-...+.+.+.- ...+... +..+...++|..+|.+ +...++..+||||.|.|++|||||..+|||||||
T Consensus 147 ~~~~~l~~D~~~~dfl~~---e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 147 ALQSVLESDTERLDFLAE---EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred HHhhhhhccHHHHHHHHh---hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 110000000012222111 1001111 1222233488899997 4567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE-EecChhhHHh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSILN 248 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
||||.||..+..++.+.|..+ +.|+|+||||..++. .|..||.+++-++- +.|+-+++-+
T Consensus 224 EPTNhLDv~av~WLe~yL~t~-----~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTW-----KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CCcccchhHHHHHHHHHHhhC-----CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999876 269999999999995 79999999987774 4565555443
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=1.8e-29 Score=214.97 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=122.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-----eEE---EE-----cCceEEEecCCCCcccccCHHH
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-----GHV---YV-----KRPKSFVFQNPDHQVVMPTVEA 119 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-----G~I---~~-----~~~~~~v~q~~~~~~~~~tv~~ 119 (263)
.++++++++.+| +.+|+||||||||||+.+|........ |.. .+ ...+.+.+++.....
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-------
Confidence 357788888887 889999999999999999885433221 210 00 012556666543111
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHH
Q 024738 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL----AEACKVLLLDELTTFLDESDQF 195 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral----~~~p~llllDEPts~LD~~~~~ 195 (263)
| .........+.++++. .+..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+.
T Consensus 83 ~---------~~~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~ 150 (198)
T cd03276 83 N---------PLCVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK 150 (198)
T ss_pred C---------cCCHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence 1 0111123456667766 6677889999999999999999999 5899999999999999999999
Q ss_pred HHHHHHHHHHhcC-CCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 196 GVIEAVKNLLGDS-GEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 196 ~l~~~l~~l~~~~-~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
.+.+.|.+++++. ++.|||++||+++.+..+|+|.+|..++
T Consensus 151 ~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 151 ISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999976431 3468999999999987679999998754
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=3.8e-30 Score=226.03 Aligned_cols=184 Identities=19% Similarity=0.266 Sum_probs=126.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|. ++|.+. .+|.+.++ +++|+||||||||||+++|++++.+..|++...+
T Consensus 3 ~i~l~nf-~~~~~~----------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~ 70 (247)
T cd03275 3 RLELENF-KSYKGR----------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKP 70 (247)
T ss_pred EEEEECc-cccCCC----------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccC
Confidence 4777776 455421 12333444 9999999999999999999999987777664321
Q ss_pred -----ceEEEe--cCCCCcccccCHHHHH-HhhccCCCCChHHHHHHHHHHHHHcCCCcc--------------------
Q 024738 100 -----PKSFVF--QNPDHQVVMPTVEADV-AFGLGNLNLTHDEVRSKVAKALDAVGMSNY-------------------- 151 (263)
Q Consensus 100 -----~~~~v~--q~~~~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------------- 151 (263)
.+...| |++.......++.+.. .+....... ..+.+.++++.+|+...
T Consensus 71 ~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~----s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 71 DSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVV----SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEe----cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 122333 3222111111111111 111111111 13345677888888421
Q ss_pred --cCCCCCCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 152 --LQRPVQTLSGGQKQRVAIAGALAEA----CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 152 --~~~~~~~LSgGqkqRv~lAral~~~----p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.++++.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|++++++ |.+||++||+.+.++.
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~--g~~vi~isH~~~~~~~ 224 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP--NFQFIVISLKEEFFSK 224 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC--CcEEEEEECCHHHHhh
Confidence 1234589999999999999999875 8999999999999999999999999998642 6799999999888889
Q ss_pred CCEEEEEeC
Q 024738 226 ADGAFYMED 234 (263)
Q Consensus 226 ~d~v~~l~~ 234 (263)
||++++|..
T Consensus 225 ~d~i~~~~~ 233 (247)
T cd03275 225 ADALVGVYR 233 (247)
T ss_pred CCeEEEEEe
Confidence 999999864
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.6e-29 Score=251.62 Aligned_cols=106 Identities=29% Similarity=0.403 Sum_probs=96.6
Q ss_pred HHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 024738 139 VAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAE---ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214 (263)
Q Consensus 139 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~---~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tii 214 (263)
..++++.+||.. .+++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.|+++.++ |.|||
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~--G~TVI 885 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ--GNTVV 885 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEE
Confidence 446788899985 5799999999999999999999997 59999999999999999999999999998643 67999
Q ss_pred EEccCcchhhcCCEEEEE------eCCEEEEecChhhH
Q 024738 215 WVTHRLEELEYADGAFYM------EDGKIVMQADGVSI 246 (263)
Q Consensus 215 ivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 246 (263)
++||+++.++.||++++| ++|++++.|+++++
T Consensus 886 vi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 886 VIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999998889999999 79999999998765
No 390
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=7.7e-30 Score=257.65 Aligned_cols=193 Identities=25% Similarity=0.312 Sum_probs=164.2
Q ss_pred cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC----------ceEEEecCCCCcccccCH
Q 024738 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR----------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 50 ~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~----------~~~~v~q~~~~~~~~~tv 117 (263)
..++|+||+=-+.||-.+||+|+|||||||||++|+|-..- .+|+|.++| .+||+-|+..... ..||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~-~~TV 881 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSP-ELTV 881 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCc-ccch
Confidence 35799999999999999999999999999999999996532 467888865 4799999875433 3399
Q ss_pred HHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCCC----CChHHHHHHHHHHHHhhCC-CEEEEeCCCCCC
Q 024738 118 EADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQT----LSGGQKQRVAIAGALAEAC-KVLLLDELTTFL 189 (263)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----LSgGqkqRv~lAral~~~p-~llllDEPts~L 189 (263)
+|-+.|.+..+ ..+.++..+.++++++.++|+++.+.-++. ||..||+|+.||--|+.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 99998875432 344556668899999999999877766655 9999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEe-CCEEEEecChhh
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYME-DGKIVMQADGVS 245 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~-~G~i~~~g~~~~ 245 (263)
|..+...+++.+++++.. |.||+.+-|.+.. + +..|++++|+ +|+.++.|+.-+
T Consensus 962 DsqaA~~i~~~lrkla~t--GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADT--GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cHHHHHHHHHHHHHHHhc--CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999863 7899999999985 4 7899999995 688999998754
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6e-29 Score=227.62 Aligned_cols=198 Identities=26% Similarity=0.344 Sum_probs=157.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.|.|-+.+|+|.|.+. .+.+.+++|-|.-...+||+||||.||||||++|.|-+.|..|+.+-+. +|||..|..
T Consensus 584 PPvLGlH~VtFgy~gq----kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ----KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred CCeeecccccccCCCC----CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh
Confidence 3579999999999764 3799999999999999999999999999999999999999999987654 578888865
Q ss_pred CCccccc-CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccC-CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 109 DHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 109 ~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
.-..... |..+.+.-. ++++. +.++..|-.+||....+ -.+..|||||+-||++|-.-+..|++|||||||
T Consensus 660 ~E~L~~Eetp~EyLqr~---FNlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 660 NEALNGEETPVEYLQRK---FNLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred HHhhccccCHHHHHHHh---cCCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 4333222 555544322 23432 44567889999975543 567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEE-ecChh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVM-QADGV 244 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~-~g~~~ 244 (263)
++||..+...+.+.|.++. | .|||||||-.++ +.-...||+++..|-+ +|+-+
T Consensus 733 NNLDIESIDALaEAIney~----G-gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 733 NNLDIESIDALAEAINEYN----G-GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CCcchhhHHHHHHHHHhcc----C-cEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 9999999999999999872 3 689999999987 4444577777665543 34433
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=8.3e-28 Score=223.10 Aligned_cols=210 Identities=22% Similarity=0.341 Sum_probs=179.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---------- 100 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~---------- 100 (263)
.+.|++++|+..-... .+.+++|||++..|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++++
T Consensus 255 ~~vL~V~~L~v~~~~~----~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 255 EVVLEVEDLSVKDRRG----VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CeEEEEeeeEeecCCC----CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 5689999999875432 36899999999999999999999999999999999999999999999762
Q ss_pred -----eEEEecCCCCccc--ccCHHHHHHhhccC------CC-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHH
Q 024738 101 -----KSFVFQNPDHQVV--MPTVEADVAFGLGN------LN-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 101 -----~~~v~q~~~~~~~--~~tv~~~~~~~~~~------~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 165 (263)
++|||.+....-. ..++.+|+.+.... .+ .+..+..+.+.++++.|++. .-...+..+||||.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 5899998632221 12899998775321 12 34567778888999999996 4566778999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|+-+||-|..+|++||+.+||.|||..+.+.+.+.|.+.++ .|+.|+++|-|++++ ..||||.||.+|+++...+++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~--~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD--AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh--cCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 99999999999999999999999999999999999999865 478999999999996 789999999999999988887
Q ss_pred hH
Q 024738 245 SI 246 (263)
Q Consensus 245 ~~ 246 (263)
+.
T Consensus 489 ~~ 490 (501)
T COG3845 489 EA 490 (501)
T ss_pred cC
Confidence 63
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-28 Score=228.61 Aligned_cols=197 Identities=29% Similarity=0.345 Sum_probs=162.5
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecC
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQN 107 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~ 107 (263)
+.|.+++.+|+|.|..++ .+.+.+++++++.-..++++|+||+||||++|++.|-..|..|.+.+.+ +++|-+|.
T Consensus 359 ~~p~l~i~~V~f~y~p~~---y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qh 435 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSE---YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQH 435 (582)
T ss_pred CCCeeEEEeeeccCCCcc---hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHh
Confidence 456899999999997643 2699999999999999999999999999999999999999999998864 58999997
Q ss_pred CCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 108 PDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
...++.. .+-. +.+-. ...+.. ++.+++-+..+||+ +...+++..||||||-||++|.+...+|-+|+||||
T Consensus 436 hvd~l~~-~v~~-vd~~~~~~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 436 HVDFLDK-NVNA-VDFMEKSFPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred hhhHHHH-HhHH-HHHHHHhCCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 5433222 2211 11111 122333 34566788999998 567778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ 240 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~ 240 (263)
||.||.++...+.+.|+.+ + | .||+||||.++++ .|+.+|+.++|++...
T Consensus 510 TNhLD~dsl~AL~~Al~~F---~-G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 510 TNHLDRDSLGALAKALKNF---N-G-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CccccHHHHHHHHHHHHhc---C-C-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999987 2 3 6899999999996 7999999999999763
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=7.2e-28 Score=226.48 Aligned_cols=195 Identities=27% Similarity=0.408 Sum_probs=157.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc--C---ceEEEe
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--R---PKSFVF 105 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~--~---~~~~v~ 105 (263)
+..|++++|+..-+++ +..+++|+||+|+.|+.+.|+||||||||+|+|+++||.+-.+|++.-. + .+-|+|
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflP 507 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLP 507 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEec
Confidence 3589999999998763 2367899999999999999999999999999999999998899999763 3 378999
Q ss_pred cCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCCcccC-----------CCCCCCChHHHHHHHHHHHH
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMSNYLQ-----------RPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral 173 (263)
|.|. +...|+++.+.++...... ..-..++.+.+.|+.++|.+.+. .-...||+||+||+++||.+
T Consensus 508 QrPY--mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 508 QRPY--MTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred CCCC--ccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 9884 4445999999887433211 11111344555666665544332 22468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCC
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G 235 (263)
.++|++-||||-||++|.+....+.+.+++. |+|.|-|+|+....++-|.++-|+.+
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-----giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM-----GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc-----CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999988888764 68999999999999999999999753
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.94 E-value=1.9e-26 Score=193.45 Aligned_cols=196 Identities=32% Similarity=0.462 Sum_probs=152.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---------- 100 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~---------- 100 (263)
+..|++.++.|+|... .|++-|+|++++.|....++|.||||||||||+++|-.-.-.|.|.+.++
T Consensus 11 ~~aievsgl~f~y~~~----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred cceEEEeccEEecccC----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc
Confidence 3579999999999764 38999999999999999999999999999999999977666688887543
Q ss_pred ---eEEEecC----------CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 101 ---KSFVFQN----------PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 101 ---~~~v~q~----------~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
..|+.-+ ...+..+ ++.. +.++... ... ++-+++++.++++ +.-+.+.+|-|||+||
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~-sae~-mifgV~g--~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDI-SAEH-MIFGVGG--DDP----ERREKLIDILDID--LRWRMHKVSDGQRRRV 156 (291)
T ss_pred cCceeEecccccccccccccccccccc-cHHH-HHhhccC--CCh----hHhhhhhhheecc--ceEEEeeccccchhhh
Confidence 2232211 0011111 3332 3333221 111 2334566666666 3346778999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
.|++.|++.-++|||||-|--||..++..+++++++-+.+ +|.||+++||..+-++ .+.+++.|++|+++..-
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~-RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ-RGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh-cCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 9999999999999999999999999999999999998865 5899999999999875 79999999999998743
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.94 E-value=6.7e-27 Score=199.24 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=111.7
Q ss_pred ceeceeeEEeCCC-EEEEECCCCCcHHHHHHHHh--------CCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHh
Q 024738 53 ILRDCSFSVPSGQ-LWMLLGPNGCGKSTLLKVLA--------GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 53 iL~~vsl~i~~Ge-~~~l~G~NGsGKSTLlk~i~--------Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
.+-++||++.+|+ +++|+||||||||||||+|+ |..-|....+ .++|..|
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~----------------- 74 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFEN----------------- 74 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccE-----------------
Confidence 3568999999995 89999999999999999998 4433322111 0111111
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE-AVK 202 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~-~l~ 202 (263)
.+..++..+..++..+++|+||+|++.+++++ .+|+++|+|||++|||+..+..+.. .++
T Consensus 75 ------------------~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 75 ------------------IFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred ------------------EEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 11122333345566789999999999999884 8999999999999999999999864 667
Q ss_pred HHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 203 ~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
++.+ .+.++|++||+.+..++||++++|++|++..++
T Consensus 136 ~l~~--~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 136 ELLE--RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHh--cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 6643 367999999996556789999999999998774
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=1e-24 Score=187.75 Aligned_cols=171 Identities=17% Similarity=0.199 Sum_probs=108.8
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE----------EEEcC---ceEEEecCCCCcccccCHHHH
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH----------VYVKR---PKSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~----------I~~~~---~~~~v~q~~~~~~~~~tv~~~ 120 (263)
++++.+++.+| +.+|+|||||||||||.+|.-.+-..... |.... .+-..++..... -..+|
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~----~~~~n 88 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN----IQVDN 88 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc----cccCC
Confidence 46667777665 77999999999999999987765322110 11100 111222221100 01111
Q ss_pred HHhhcc------CCCCChHHHHHHHHHHHHHcCC-CcccCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCC
Q 024738 121 VAFGLG------NLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGAL----AEACKVLLLDELTTFL 189 (263)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lAral----~~~p~llllDEPts~L 189 (263)
+.+... ...+.. .+.+..+.- .+..+..+.+||+|||||+.+|+++ +.+|+++|+||||++|
T Consensus 89 ~~~~~~q~~~~~~~~~~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~L 161 (213)
T cd03277 89 LCQFLPQDRVGEFAKLSP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGM 161 (213)
T ss_pred ceEEEchHHHHHHHhCCh-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccC
Confidence 111000 000111 122323322 2345678899999999998877655 4799999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCC--EEEEEeCCE
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYAD--GAFYMEDGK 236 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d--~v~~l~~G~ 236 (263)
|+..+..+++.|.+++++.++.|+|++||++... ++|| ++++|.+|+
T Consensus 162 D~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 162 DPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999986432235899999998764 5655 788999886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=2.9e-25 Score=204.21 Aligned_cols=180 Identities=32% Similarity=0.391 Sum_probs=132.0
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE----Ec-------C-------
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----VK-------R------- 99 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~----~~-------~------- 99 (263)
++..+|+.+. ..|..+= ...+|+++||+||||-||||-+|+|+|.+.|.=|+-. |+ |
T Consensus 79 e~vHRYg~Ng----FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVNG----FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCCc----eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHH
Confidence 4577887542 1222221 3468999999999999999999999999999766442 11 0
Q ss_pred ------ce--EEEecCCCCc--ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 ------PK--SFVFQNPDHQ--VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ------~~--~~v~q~~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
.+ ..=+|-.... ..-.+|.+-+.- ..-....+++.++++|.+.+++.+++|||||.||+||
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aI 224 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAI 224 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHH
Confidence 01 1111110000 000122222110 0011246678999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc-CCEEEEEe
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYME 233 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~ 233 (263)
|.|++++++++++|||+|-||...+-...+.++++++. +++||+|.||+..+.+ +|-|.++.
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~--~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED--GKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc--CCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999999999864 5799999999999985 89888886
No 399
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.92 E-value=2.3e-25 Score=207.63 Aligned_cols=186 Identities=27% Similarity=0.389 Sum_probs=147.0
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.-|.++||-.--++.+ .++..++|+|++|-.+.|+||||||||+|+|+|.|+.|...|...+.. ++-|+||.|.
T Consensus 480 ~gI~lenIpvItP~~~----vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 480 NGIILENIPVITPAGD----VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPY 555 (728)
T ss_pred cceEEecCceeccCcc----eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCc
Confidence 3588999988776643 578999999999999999999999999999999999999999887753 5889999885
Q ss_pred CcccccCHHHHHHhhcc-----CCCCChHHHHHHHHHHHHHcCCCcccCCC---------CCCCChHHHHHHHHHHHHhh
Q 024738 110 HQVVMPTVEADVAFGLG-----NLNLTHDEVRSKVAKALDAVGMSNYLQRP---------VQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGqkqRv~lAral~~ 175 (263)
. ...|.+|.+.++-. ..++.. +.+..+|+.+.|+..+.+- -..||||||||+++||.+.+
T Consensus 556 m--s~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 556 M--SGGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred c--CcCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc
Confidence 3 34588888776521 223333 2344555555554443332 25899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
+|++-+|||-||+..++....+.+..++. |.+.|-+||++...++-..++-+
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~~-----gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKDA-----GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHhc-----CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999888888887764 68999999999998765554444
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=192.10 Aligned_cols=179 Identities=27% Similarity=0.421 Sum_probs=144.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEEcCc--eEEEecCCCCcccccCHHHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--------LKPTNGHVYVKRP--KSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~p~~G~I~~~~~--~~~v~q~~~~~~~~~tv~~~ 120 (263)
..+|+|+||++++|++++|+|+|||||||||++|+|. ++|++|.|.+... -+.+|-.....+...|+.+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 3589999999999999999999999999999999995 5799999987543 23455443322222255555
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCc--ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSN--YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~ 198 (263)
+.-- .+ + ...+.++|.+.|+.+ +..+++++||.|||.|+.||++++..|.+++.||-.|.||+.+...+.
T Consensus 476 l~s~---tG----D-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVA 547 (593)
T COG2401 476 LRSK---TG----D-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVA 547 (593)
T ss_pred Hhhc---cC----c-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHH
Confidence 4321 11 1 134567899999974 456788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEE
Q 024738 199 EAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIV 238 (263)
Q Consensus 199 ~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~ 238 (263)
.-|.+++++ .|.|++++||+.+..+ . -|.++.+.-|+..
T Consensus 548 rkiselaRe-~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 548 RKISELARE-AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHH-hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999875 4799999999999985 4 7999998877654
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.90 E-value=6.9e-24 Score=174.99 Aligned_cols=140 Identities=26% Similarity=0.317 Sum_probs=103.3
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE 134 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~ 134 (263)
...++.+.++.+++|+|||||||||+++.+....-...|.+.....+ |.. ...+.+ .+.+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~----~~g---~~~~~~--~~~~----------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV----KAG---CIVAAV--SAEL----------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcc----cCC---Ccceee--EEEE-----------
Confidence 44455666667999999999999999999877665555544331111 000 000000 0000
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024738 135 VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 135 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~ 210 (263)
+ ....+||+||+||++||++|+. +|+++|+|||++|+|+..+..+.+.+.++..+ +
T Consensus 72 -------------i-----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~ 131 (162)
T cd03227 72 -------------I-----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--G 131 (162)
T ss_pred -------------e-----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--C
Confidence 0 0001299999999999999987 78999999999999999999999999987653 5
Q ss_pred cEEEEEccCcchhhcCCEEEEEeC
Q 024738 211 VTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 211 ~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
.++|++||+.+....+|+++.|..
T Consensus 132 ~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 132 AQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CEEEEEcCCHHHHHhhhhEEEEEE
Confidence 799999999999888999999964
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.90 E-value=5.4e-24 Score=178.37 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 159 LSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 159 LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
||+||+||++|||+++ .+|+++|+|||+++||+..+..+.+.|.++++. |.++|++||+.+.+..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~--g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH--TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998643 5799999999988888999999975
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.2e-22 Score=197.46 Aligned_cols=121 Identities=28% Similarity=0.402 Sum_probs=106.1
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..+.|..+||.. .+.++..+|||||.|||-||.-|.... -++||||||.||-....+++++.|.++... |-||
T Consensus 801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~--GnTV 878 (935)
T COG0178 801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK--GNTV 878 (935)
T ss_pred HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 3345677889974 588999999999999999999999887 999999999999999999999999999864 6799
Q ss_pred EEEccCcchhhcCCEEEEEe------CCEEEEecChhhHHhhhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYME------DGKIVMQADGVSILNFIKSRQSSYIER 260 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~~~~~~~~~~ 260 (263)
|++.|+++.++.||+|+-|- .|+|++.|+|+++.+...+....|++.
T Consensus 879 iVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~ 931 (935)
T COG0178 879 IVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 (935)
T ss_pred EEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHH
Confidence 99999999999999999984 689999999999987655555667643
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.90 E-value=2.5e-24 Score=186.44 Aligned_cols=152 Identities=21% Similarity=0.225 Sum_probs=112.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE-EEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+.+|++|++.++++++|.||||+|||||+++++- +.+-.++| |+|.+... .
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~---~---------------- 70 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSAD---I---------------- 70 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEE---E----------------
Confidence 58899999999999999999999999999999982 11111222 33332110 0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHH
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLLDEL---TTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llllDEP---ts~LD~~~~~~l~~~l~~l~ 205 (263)
..+++++..+++.+.. ...+|.||+|++.+++++ +.+|+++||||| |++||+...... .++.+.
T Consensus 71 ------~~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~ 139 (222)
T cd03285 71 ------PIVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIA 139 (222)
T ss_pred ------eccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHH
Confidence 0122345566766443 578999999999999999 899999999999 999999988543 334443
Q ss_pred hcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 206 GDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
++ .+.++|++||+.+..++||++..+++|++...+.
T Consensus 140 ~~-~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 140 TQ-IKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hc-CCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 32 3579999999744457899999999999977664
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=1.4e-22 Score=213.51 Aligned_cols=120 Identities=25% Similarity=0.277 Sum_probs=105.9
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEA---CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~---p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..+.|..+||.. .+.++..+|||||.||+-||.-|..+ +.++||||||.||++.....+++.|.++... |.||
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~--g~tv 1755 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL--GHSV 1755 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCeE
Confidence 3456788999985 58999999999999999999999875 7999999999999999999999999999754 6799
Q ss_pred EEEccCcchhhcCCEEEEEe------CCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYME------DGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
|+|.||++.++.||+++-|. .|+|++.|+|+++.+...+....|+.
T Consensus 1756 ivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~l~ 1807 (1809)
T PRK00635 1756 IYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYMC 1807 (1809)
T ss_pred EEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHHhc
Confidence 99999999999999999995 57999999999998865566666653
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.3e-23 Score=184.18 Aligned_cols=76 Identities=26% Similarity=0.271 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 158 TLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 158 ~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.|||||+||++||++++. +|+++|+||||++||+..+..+.+.|+++.+ +.|+|++||+++....||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR---SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEechHHHHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999998753 479999999998778999999998
Q ss_pred CCE
Q 024738 234 DGK 236 (263)
Q Consensus 234 ~G~ 236 (263)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 864
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.4e-24 Score=193.98 Aligned_cols=206 Identities=24% Similarity=0.300 Sum_probs=146.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcCceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~~~~~v~q~~~ 109 (263)
+.|.++|.+.+-.++ ..+.|.||.|-.|..|+|+||||-||||||+-|+.- --|..=.|.+..+-..+...+.
T Consensus 263 ~DIKiEnF~ISA~Gk-----~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 263 MDIKIENFDISAQGK-----LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred ccceeeeeeeecccc-----eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 459999999887654 589999999999999999999999999999999863 2233333443321100000000
Q ss_pred Cc------------------------ccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHH
Q 024738 110 HQ------------------------VVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQ 163 (263)
Q Consensus 110 ~~------------------------~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq 163 (263)
.. ....|+.+.+.-.+ ............+++.+|.-+|++ +..+++...+|||.
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 00 00002222111000 000011112245677788889997 45678889999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
|.||+|||||...|-+|.|||||+.||..+..++-+.|.-+. +|++|||||..++. .|..||.+++.++.++-.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk-----KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrG 492 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK-----KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRG 492 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh-----heeEEEecccchHHHHHHHHhhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999998762 59999999999995 799999999998866544
Q ss_pred hhhHH
Q 024738 243 GVSIL 247 (263)
Q Consensus 243 ~~~~~ 247 (263)
...++
T Consensus 493 NY~~F 497 (807)
T KOG0066|consen 493 NYTLF 497 (807)
T ss_pred hHHHH
Confidence 44444
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.88 E-value=2.6e-23 Score=177.34 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=106.3
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~ 133 (263)
-..++++.+|++++|+||||||||||||+|++.. .+..|. |++.......+ .+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~--------~~~~~~~~i~~----~d-------------- 73 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC--------FVPAESASIPL----VD-------------- 73 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC--------CccccccccCC----cC--------------
Confidence 4456667789999999999999999999999543 222231 22221100000 00
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCcE
Q 024738 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSGEVT 212 (263)
Q Consensus 134 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-l~~l~~~~~~~t 212 (263)
+.+..++..+......+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+... +..+.+ .+.+
T Consensus 74 -------qi~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~--~~~~ 143 (202)
T cd03243 74 -------RIFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE--KGCR 143 (202)
T ss_pred -------EEEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCe
Confidence 0111122222233445667777776 6666788899999999999999999988877654 555543 3679
Q ss_pred EEEEccCcchhhcCCEEEEEeCCEEEEecChhh
Q 024738 213 ALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
+|++||+.+.+..|+++..+.++++...++..+
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 999999998888889999999999988876533
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=4e-22 Score=201.90 Aligned_cols=130 Identities=28% Similarity=0.411 Sum_probs=109.7
Q ss_pred CHHHHHHhhccCCCCChH----------HHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEE
Q 024738 116 TVEADVAFGLGNLNLTHD----------EVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLL 182 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llll 182 (263)
+|.+.+.| +........ ++.+++ ++++.+||..+ +++++.+|||||+|||+||+||+.+| +++||
T Consensus 438 ~v~~~~~~-~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llIL 515 (943)
T PRK00349 438 SIGEALEF-FENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVL 515 (943)
T ss_pred cHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEe
Confidence 77777766 333333321 333444 36888999876 79999999999999999999999997 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+..+..+++.|+++.+ .|.|||+|+|+++++..||+|++| ++|++++.|+++++...
T Consensus 516 DEPtagLd~~~~~~L~~~L~~L~~--~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 516 DEPSIGLHQRDNDRLIETLKHLRD--LGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 999999999999999999999864 368999999999998789999999 99999999999988653
No 410
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.88 E-value=2e-22 Score=171.79 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=102.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+++|++|+. |++++|+||||||||||+|+|+|...- ..|. .+.. ..+++|. ...+...++.+|+.++...
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a-~~~~~q~-~~l~~~~~~~d~l~~~~s~--- 86 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCA-SSFELPP-VKIFTSIRVSDDLRDGISY--- 86 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEec-CccCccc-ceEEEeccchhccccccCh---
Confidence 4778887765 799999999999999999999986531 2232 1211 2466773 3233333888988775422
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE-AVKNLLGDSG 209 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~~~ 209 (263)
...+. +++.++++.+++ .+|+++|+||||+|+|+..+..+.. ++.++.+ .
T Consensus 87 ~~~e~-~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~--~ 137 (199)
T cd03283 87 FYAEL-RRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN--K 137 (199)
T ss_pred HHHHH-HHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH--C
Confidence 12333 567778887763 7999999999999999999887654 6777653 3
Q ss_pred CcEEEEEccCcchhh---cCCEEEEE
Q 024738 210 EVTALWVTHRLEELE---YADGAFYM 232 (263)
Q Consensus 210 ~~tiiivtH~~~~~~---~~d~v~~l 232 (263)
+.|+|++||+++.+. ..+++-.+
T Consensus 138 ~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 138 NTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 689999999999874 24555544
No 411
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=3.6e-22 Score=202.47 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=161.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEEcC----------ceEEEecCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---TNGHVYVKR----------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~~~~----------~~~~v~q~~~~~~~~~tv 117 (263)
..+|+|+|.-+++|+.+.++||-||||||||+.++|-+.- ..|+|.++| .++|..|+....+.+ ||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l-TV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL-TV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee-EE
Confidence 4699999999999999999999999999999999997643 356898875 368999986544444 99
Q ss_pred HHHHHhhccCCC-------CChHHHH-HHHHHHHHHcCCCccc-----CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 118 EADVAFGLGNLN-------LTHDEVR-SKVAKALDAVGMSNYL-----QRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 118 ~~~~~~~~~~~~-------~~~~~~~-~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
++-+.|.++..+ ..+.+.. ...+.+++.+||+.-. |...+..|||||+||.+|-+++.+++++.+||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 998888654321 2222221 2456789999997644 44567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--hhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE--LEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~--~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|.|||..+.-++++.|+++++.. +.|.+++=|.... .+..|.|++|.+|++++.|+.+++..
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~-~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHIT-GATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhh-cceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999998754 5788888888765 47899999999999999999988765
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=1.8e-21 Score=196.80 Aligned_cols=105 Identities=30% Similarity=0.368 Sum_probs=96.7
Q ss_pred HHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 142 ALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 142 ~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.+..+||..+ +++++.+|||||+|||+||+||+.+| +++||||||+|||+..+..+++.|+++.++ |.|||+|+|
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~--G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL--GNTVIVVEH 547 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEEC
Confidence 4677899765 79999999999999999999999986 899999999999999999999999998653 689999999
Q ss_pred CcchhhcCCEEEEE------eCCEEEEecChhhHHh
Q 024738 219 RLEELEYADGAFYM------EDGKIVMQADGVSILN 248 (263)
Q Consensus 219 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 248 (263)
|++++..||++++| ++|+|++.|+++++..
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99998899999999 8999999999988854
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.85 E-value=3.6e-21 Score=164.58 Aligned_cols=138 Identities=23% Similarity=0.292 Sum_probs=100.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE-EEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+.+|++|++++|++++|+||||+|||||+|+++++. +..++| ++|-. .... ++.++
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~la~~G~~vpa~---~~~l-~~~d~---------- 74 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------IMAQIGCFVPAE---YATL-PIFNR---------- 74 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------HHHHcCCCcchh---hcCc-cChhh----------
Confidence 5899999999999999999999999999999999874 111222 11111 1111 22222
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI-EAVKNLLGDSG 209 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~-~~l~~l~~~~~ 209 (263)
++..++..+...+..+.+|.||+|+ ..+.+++.+|+++|+|||++|+|+.....+. ..+..+.+.
T Consensus 75 -----------I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-- 140 (204)
T cd03282 75 -----------LLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-- 140 (204)
T ss_pred -----------eeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--
Confidence 2344455555667788999999975 5556688999999999999999997765554 455555432
Q ss_pred CcEEEEEccCcchhhc
Q 024738 210 EVTALWVTHRLEELEY 225 (263)
Q Consensus 210 ~~tiiivtH~~~~~~~ 225 (263)
+.++|++||+.+.++.
T Consensus 141 ~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 141 ESTVFFATHFRDIAAI 156 (204)
T ss_pred CCEEEEECChHHHHHH
Confidence 6899999999998753
No 414
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.82 E-value=6.1e-20 Score=168.14 Aligned_cols=176 Identities=28% Similarity=0.422 Sum_probs=138.3
Q ss_pred cceeceeeEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEEcCceEEEecCCCCcccccCHHHHHHhhc
Q 024738 52 PILRDCSFSVPSG-----QLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 52 ~iL~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
.-+-++.|.|..| |++..+|+||.|||||+++++|.++|++| +|-. -.++|=||.... -+..||++.+.--.
T Consensus 350 k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-lnVSykpqkisp-K~~~tvR~ll~~kI 427 (592)
T KOG0063|consen 350 KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-LNVSYKPQKISP-KREGTVRQLLHTKI 427 (592)
T ss_pred eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-cceeccccccCc-cccchHHHHHHHHh
Confidence 4678899999988 57899999999999999999999999976 3322 247888886542 23347877543221
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 126 GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
...... ..-+.+.++-+.+++..++.+..|||||+|||+||.+|-..+++++.|||.+-||.+.+...-..++++.
T Consensus 428 r~ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfi 503 (592)
T KOG0063|consen 428 RDAYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503 (592)
T ss_pred HhhhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHH
Confidence 111111 2345567788888888999999999999999999999999999999999999999999988888888754
Q ss_pred hcCCCcEEEEEccCcchhhc-CCEEEEEeC
Q 024738 206 GDSGEVTALWVTHRLEELEY-ADGAFYMED 234 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~~-~d~v~~l~~ 234 (263)
-.. ++|-.+|.||.-.+.+ |||+++.+.
T Consensus 504 lha-kktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 504 LHA-KKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred Hhc-cchhhhhhhHHHHHHhhcceeEEEec
Confidence 332 4688999999888864 999998874
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-18 Score=154.78 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=63.7
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hc
Q 024738 156 VQTLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EY 225 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~ 225 (263)
...+|+||+|+++||++|+ .+|+++|+||||++||+..+..+++.+.++ + .+++++|+...+ .+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~-----~-q~ii~~~~~~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR-----V-QTFVTTTDLADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC-----C-CEEEEeCCchhccch
Confidence 4568999999999999985 799999999999999999999999998764 1 356666666665 55
Q ss_pred C---CEEEEEeCCEE
Q 024738 226 A---DGAFYMEDGKI 237 (263)
Q Consensus 226 ~---d~v~~l~~G~i 237 (263)
| ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999986
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.79 E-value=6.2e-20 Score=154.56 Aligned_cols=126 Identities=25% Similarity=0.323 Sum_probs=84.5
Q ss_pred EEEEECCCCCcHHHHHHHHh-CCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLA-GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD 144 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~-Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (263)
+++|+||||+|||||+|.++ ..+.+..|. |+|-.. ..++. ..+++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~--------~v~a~~------------~~~~~-------------~d~il~ 47 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGS--------FVPAES------------AELPV-------------FDRIFT 47 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCC--------Ceeehh------------eEecc-------------cceEEE
Confidence 36899999999999999998 333233332 222211 00000 012234
Q ss_pred HcCCCcccCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCcEEEEEccCcc
Q 024738 145 AVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--ACKVLLLDELTTFLDESDQFGVI-EAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 145 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~llllDEPts~LD~~~~~~l~-~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
.++..+..++..++||+|++| +++++.. +|+++|+|||++|+|+.....+. .+++.+.+ ..+.++|++||+.+
T Consensus 48 ~~~~~d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~ 123 (185)
T smart00534 48 RIGASDSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHE 123 (185)
T ss_pred EeCCCCchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHH
Confidence 455556667788899999887 4444444 99999999999999999877765 45555543 22579999999997
Q ss_pred hhhcCCE
Q 024738 222 ELEYADG 228 (263)
Q Consensus 222 ~~~~~d~ 228 (263)
..+.||+
T Consensus 124 l~~~~~~ 130 (185)
T smart00534 124 LTKLADE 130 (185)
T ss_pred HHHHhhc
Confidence 6666664
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.77 E-value=1.3e-18 Score=150.09 Aligned_cols=153 Identities=24% Similarity=0.202 Sum_probs=94.8
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEE--cCceEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYV--KRPKSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~--~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
.+.+|++|+..+ ++++|+||||||||||||+++++.-. ..|.... ...++++.|-. ..+ ++.+++..+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~---~~~-~~~~~ls~g---- 89 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF---TRI-GASDDLAGG---- 89 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe---ccC-CchhhhccC----
Confidence 478999999887 99999999999999999999875311 1121110 01122222210 011 222222211
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHH
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLLDEL---TTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llllDEP---ts~LD~~~~~~l~~~l~~ 203 (263)
.|.=+..+..+++++ +.+|+++||||| |+++|.... ...++..
T Consensus 90 ------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~ 137 (216)
T cd03284 90 ------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEY 137 (216)
T ss_pred ------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHH
Confidence 122233333455554 469999999999 888887653 2233333
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+.+. .+.++|++||+.+..+.+|++..+++|++...+..+++
T Consensus 138 l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 138 LHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 3322 25799999999876678888777788888776665554
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=6.8e-18 Score=145.35 Aligned_cols=135 Identities=22% Similarity=0.212 Sum_probs=88.4
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEEcC--ceEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVKR--PKSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~~--~~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
+=+|+++.=..+.+++|+||||+|||||||.++. ++ +..|...+.. .++|..|.........++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~-------- 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSG-------- 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhc--------
Confidence 3455554321227999999999999999999983 33 5667655432 344444432100000011110
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV-IEAVKNLLGD 207 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~ 207 (263)
+ +.+ .-+.||+++|++++.+|+++|+|||++|+|+.....+ ...++++.+.
T Consensus 89 -------------------~--------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 89 -------------------Q--------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred -------------------c--------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 0 111 3467999999999999999999999999999764444 5677777543
Q ss_pred -CCCcEEEEEccCcchhh
Q 024738 208 -SGEVTALWVTHRLEELE 224 (263)
Q Consensus 208 -~~~~tiiivtH~~~~~~ 224 (263)
..+.++|++||+.+.++
T Consensus 141 ~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 141 GPECPRVIVSTHFHELFN 158 (213)
T ss_pred CCCCcEEEEEcChHHHHH
Confidence 12358999999999875
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.74 E-value=2.8e-18 Score=171.68 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=103.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCC-CEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEEcCceEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSG-QLWMLLGPNGCGKSTLLKVLAGL-LKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
.+.++++..-+-.. .-.-.+|+++..+ ++++|+||||+|||||||+|+|+ +.+..| .++|.....
T Consensus 295 ~i~l~~~rhPll~~-----~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------~~Vpa~~~~ 361 (771)
T TIGR01069 295 KIILENARHPLLKE-----PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------IPIPANEHS 361 (771)
T ss_pred CEEEccccCceecC-----CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------CCccCCccc
Confidence 47777665432110 0122478889887 99999999999999999999998 444444 144443311
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
. + ...+++.. .+ +.++......++||+||++++.|++++ .+|+++|+|||++|+|
T Consensus 362 ~--~-~~~d~i~~-----~i----------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD 416 (771)
T TIGR01069 362 E--I-PYFEEIFA-----DI----------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTD 416 (771)
T ss_pred c--c-cchhheee-----ec----------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCC
Confidence 1 1 11121110 01 111122345778999999999998876 7999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 191 ESDQFGVI-EAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 191 ~~~~~~l~-~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
+.....+. .++..+.. .|.++|++||+.+...
T Consensus 417 ~~eg~ala~aiLe~l~~--~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 417 PDEGSALAISILEYLLK--QNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHH
Confidence 99999884 56666643 3679999999988743
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.72 E-value=3.4e-17 Score=140.95 Aligned_cols=169 Identities=26% Similarity=0.377 Sum_probs=99.3
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHh-CCC--CCC-------ceEEEE-c-------CceEEEecCCCCcccc--
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA-GLL--KPT-------NGHVYV-K-------RPKSFVFQNPDHQVVM-- 114 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~--~p~-------~G~I~~-~-------~~~~~v~q~~~~~~~~-- 114 (263)
+...+.+.+ .+++|+|||||||||++.+|. .+- ... +.-|.. . ..+...+++.......
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 566777765 499999999999999999993 322 110 111111 0 1133344433211000
Q ss_pred c--CHHHHHHh-hccCCCCC-hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCC
Q 024738 115 P--TVEADVAF-GLGNLNLT-HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELT 186 (263)
Q Consensus 115 ~--tv~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPt 186 (263)
. .+...+.- +-..+..+ .....+.+.+.+..+.+... .||||||.+++||.-|+ .+++++|||||.
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd 168 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVD 168 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccc
Confidence 0 00000000 00000000 01112445566776666533 99999999999997664 578999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
++||...+..+.++|+++.+ ..-+|++||+...+..||+.+.+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~---~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 169 AALDEQNRKRLADLLKELSK---QSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp TTS-HHHHHHHHHHHHHHTT---TSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccc---cccccccccccccccccccccccc
Confidence 99999999999999999753 357899999999999999887663
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.67 E-value=1.1e-15 Score=135.95 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=85.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD 144 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (263)
..++|+||||||||||+++|+|+++|++|+|.++++.-.+..+ -. .+.-.. .......
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~---------~~-ei~~~~--~~~~q~~---------- 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE---------RS-EIAGCV--NGVPQHD---------- 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh---------HH-HHHHHh--ccccccc----------
Confidence 5789999999999999999999999999999998742111100 01 111000 0000000
Q ss_pred HcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--
Q 024738 145 AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-- 222 (263)
Q Consensus 145 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-- 222 (263)
++. +..-|.+=.|.....+.+.+++|+++|+|||++ .+.+..++..+ + .|.++|++||+...
T Consensus 170 -~~~------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~--~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 -VGI------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H--AGVSIIATAHGRDVED 233 (270)
T ss_pred -ccc------cccccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h--CCCEEEEEechhHHHH
Confidence 000 000111111111123334447999999999974 23344455544 2 36899999997665
Q ss_pred h------------hcCCEEEEEeCCEEEEecChhhHH
Q 024738 223 L------------EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 223 ~------------~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+ ..+||+++|++|+ ..|++++++
T Consensus 234 ~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 234 LYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 3 3589999999886 666666553
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.62 E-value=2.6e-16 Score=144.47 Aligned_cols=169 Identities=28% Similarity=0.418 Sum_probs=119.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE----cCceEEEecCCCCccccc-CHHHHHHh------------h
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----KRPKSFVFQNPDHQVVMP-TVEADVAF------------G 124 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~----~~~~~~v~q~~~~~~~~~-tv~~~~~~------------~ 124 (263)
.+|++.+++|.||-||||-+++++|-++|.-|.--- ..-++|--- ..++-++. .+.+|+.- +
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frg-selq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRG-SELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhh-HHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 589999999999999999999999999997764321 000110000 00000000 00111100 0
Q ss_pred ccC---CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024738 125 LGN---LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201 (263)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l 201 (263)
.+. ..+.....++...++++.+.|...+++-+.+||||+.||.+||.+.+.+.++.++|||.+-||...+......|
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 000 00011111223456778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEccCcchhhc-CCEEEEEe
Q 024738 202 KNLLGDSGEVTALWVTHRLEELEY-ADGAFYME 233 (263)
Q Consensus 202 ~~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~ 233 (263)
+.+... ..=||+|.||+..+.+ .|-+.++.
T Consensus 257 Rsl~~p--~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 257 RSLINP--DRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HHhhCC--CCeEEEEEeechHHHhhhcceeEEe
Confidence 998754 3579999999999985 78887776
No 423
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.62 E-value=1.4e-15 Score=131.62 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=88.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEEcCc--eEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRP--KSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~~~--~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
.+.+|++|++.+|++++|+||||+||||++|++++ .+.+..|...+... +++..|- +..+ ...+++.-
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i---~~~~-~~~d~~~~----- 89 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV---LTRM-GASDSIQH----- 89 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE---EEEe-cCcccccc-----
Confidence 48899999999999999999999999999999999 66788887655432 1211110 0000 00111110
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV-IEAVKNLLGD 207 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~ 207 (263)
-.+.++ .|-+++.-+..-+.+|+++|+|||++|.|+.....+ ..++..+.+.
T Consensus 90 --------------------------~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~ 142 (222)
T cd03287 90 --------------------------GMSTFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE 142 (222)
T ss_pred --------------------------ccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc
Confidence 001111 122233333334568999999999999886666654 4566666543
Q ss_pred CCCcEEEEEccCcchhh
Q 024738 208 SGEVTALWVTHRLEELE 224 (263)
Q Consensus 208 ~~~~tiiivtH~~~~~~ 224 (263)
.+.++|++||+.+..+
T Consensus 143 -~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 143 -KKCLVLFVTHYPSLGE 158 (222)
T ss_pred -cCCeEEEEcccHHHHH
Confidence 3579999999999854
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.62 E-value=1.6e-15 Score=152.32 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=98.1
Q ss_pred eeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE-EEecCCCCcccccCHHHHHHhhccCCCCChHH
Q 024738 57 CSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE 134 (263)
Q Consensus 57 vsl~i~-~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~ 134 (263)
.++.+. .+.++.|+|||++||||+||.++... +-.+.| +||-.... .. ++.+++
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~--------~maq~G~~vpa~~~~--~i-~~~~~i------------- 374 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA--------LMAKSGLPIPANEPS--EI-PVFKEI------------- 374 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHH--------HHHHhCCCcccCCCc--cc-cccceE-------------
Confidence 344444 45789999999999999999996431 111122 34443110 00 111221
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCcEE
Q 024738 135 VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE-AVKNLLGDSGEVTA 213 (263)
Q Consensus 135 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~~~~~ti 213 (263)
+..+|-.+...+..++||+||+|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.. .|.++
T Consensus 375 --------~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~v 443 (782)
T PRK00409 375 --------FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKI 443 (782)
T ss_pred --------EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEE
Confidence 1122333344567889999999999999988 8999999999999999999888865 4555543 36799
Q ss_pred EEEccCcchhhc-CCEEEEEeCCEEEE
Q 024738 214 LWVTHRLEELEY-ADGAFYMEDGKIVM 239 (263)
Q Consensus 214 iivtH~~~~~~~-~d~v~~l~~G~i~~ 239 (263)
|++||+.+...+ +++..++ ++.+..
T Consensus 444 IitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 444 IATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred EEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 999999888754 5544433 445444
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.62 E-value=4.1e-15 Score=130.80 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=103.4
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhh-----ccCCCCChH
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFG-----LGNLNLTHD 133 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~-----~~~~~~~~~ 133 (263)
+.+.+|+.++|+||+|+|||||++.|++......+++.. +.++-+++.. ++.+.+.-- +...+.+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~---~v~vI~er~~-----ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL---IVLLIDERPE-----EVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE---EEEEccCCCc-----cHHHHHHHhccEEEEecCCCCHH
Confidence 588999999999999999999999999988765443321 1122232210 111111000 000111110
Q ss_pred HH---HHHHHHHHHH---cCC----------------CcccCCCCCCCChHH--------HHHHHHHHHHhhCCCEEEEe
Q 024738 134 EV---RSKVAKALDA---VGM----------------SNYLQRPVQTLSGGQ--------KQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 134 ~~---~~~~~~~l~~---~~l----------------~~~~~~~~~~LSgGq--------kqRv~lAral~~~p~llllD 183 (263)
.. ...+.+.++. .|- .+........+|||+ +||+++||++..++++++|
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 00 0001111111 111 111122345679999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEE
Q 024738 184 ELTTFLDESDQFG-VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVM 239 (263)
Q Consensus 184 EPts~LD~~~~~~-l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~ 239 (263)
||+.+|..+... ++ +.++.. .+.|.|+.||++.....+|.|.+|+.|++..
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTRKE 213 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence 999999544432 33 344322 2468999999999999999999999999843
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=1.7e-14 Score=123.71 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCCChH--HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 024738 157 QTLSGG--QKQRVAIAGALAEACKVLLLDELT-----TFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 157 ~~LSgG--qkqRv~lAral~~~p~llllDEPt-----s~LD~~~~~~l~~~l~~l~~ 206 (263)
+..||+ |++++.|||+++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 334444 999999999999999999999999 99999999999999999853
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.58 E-value=1.2e-14 Score=136.94 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=105.8
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC-CCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP-DHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~-~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+++++ |++.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.+.-+--..+. ............+.+ ....+.
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~v-v~~~~~ 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVV-VATSDQ 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEE-EECCCC
Confidence 589999 99999999999999999999999999999999999887643211000000 000000000000000 000000
Q ss_pred ChH------HHHHHHHHHHHHcCCCcccCCCCCCCC-hHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHH
Q 024738 131 THD------EVRSKVAKALDAVGMSNYLQRPVQTLS-GGQKQRVAIAGALAEACKVLLLDEL--TTFLDESDQFGVIEAV 201 (263)
Q Consensus 131 ~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS-gGqkqRv~lAral~~~p~llllDEP--ts~LD~~~~~~l~~~l 201 (263)
+.- ..--.+.+.+..-|-+-++ -..+++ --|.+| .|+ +.+.|| |+|+|+.....+.+++
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~~g~~Vll--~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~dp~~~~~l~~ll 292 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRDQGLNVML--MMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYTPSVFAILPKLL 292 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEE--EEeChHHHHHHHH-HHH---------HhcCCCCccccCCHHHHHHHHHHH
Confidence 000 0011122233322322110 011222 111111 011 123464 7899999999999999
Q ss_pred HHHHhcCCCc-----EEEEEccCcchhhcCCEEEEEeCCEEEEecChhh
Q 024738 202 KNLLGDSGEV-----TALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 202 ~~l~~~~~~~-----tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
.++....+|. ||++.+||+++ .+||++..|.+|+++.+++..+
T Consensus 293 er~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 293 ERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 9875423464 99999999985 7899999999999999998754
No 428
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.58 E-value=4.2e-15 Score=144.54 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=70.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 154 RPVQTLSGGQKQRVAIAGALA----------EACKVLLLDELT-TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~----------~~p~llllDEPt-s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
.++..|||||+||++||+||+ .+|+++|||||| ++||+..+..+.+.|.++ . +.|||++||+.+.
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~---~~~iiiish~~~~ 539 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K---DTNVFVISHKDHD 539 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C---CCeEEEEECchhc
Confidence 356899999999999999987 599999999998 789999999999999987 2 5799999999877
Q ss_pred hhcCCEEEEEeC-CEE
Q 024738 223 LEYADGAFYMED-GKI 237 (263)
Q Consensus 223 ~~~~d~v~~l~~-G~i 237 (263)
...||++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 778999999986 544
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.57 E-value=6.9e-15 Score=143.42 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 157 QTLSGGQKQRVAIAGALAEA----CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~~----p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
..|||||+||++||++++.. |++||||||++|||+..+..+.+.|+++.+ +.+||+|||++..+..||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~---~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE---RHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEEChHHHHHhcCeEEEE
Confidence 37899999999999999985 699999999999999999999999999853 57999999999988899999999
Q ss_pred eCCE
Q 024738 233 EDGK 236 (263)
Q Consensus 233 ~~G~ 236 (263)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 430
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.3e-14 Score=150.40 Aligned_cols=86 Identities=23% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 024738 148 MSNYLQRPVQTLSGGQKQRVAIAGALAE----------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217 (263)
Q Consensus 148 l~~~~~~~~~~LSgGqkqRv~lAral~~----------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt 217 (263)
+....++++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|.++.. .|.+|+|||
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~--~g~~i~iis 1017 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE--GSKMIGIIS 1017 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEe
Confidence 3445677899999999999999999986 7999999999999999999999999999864 368999999
Q ss_pred cCcchh-hcCCEEEEEeCC
Q 024738 218 HRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 218 H~~~~~-~~~d~v~~l~~G 235 (263)
|++++. .+||+|+|++.+
T Consensus 1018 H~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1018 HVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred CcHHHHHhhCCEEEEEECC
Confidence 999997 579999999754
No 431
>PRK13695 putative NTPase; Provisional
Probab=99.53 E-value=3.1e-15 Score=124.44 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
.++|+|+||||||||++.+++.+.+ .| +.+ .+|+.|+... .... ..+... ...... ...+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~---~g~~~~~~~~--~~~~----~~~~~~--~~~~~~-----~~~l~~ 63 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKV---GGFYTEEVRE--GGKR----IGFKII--DLDTGE-----EGILAR 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeE---EEEEcHHHHh--cCCc----cceEEE--EcCCCC-----eEEccc
Confidence 4789999999999999999887655 45 221 3455443110 0000 001010 000000 011223
Q ss_pred cCC-C-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc
Q 024738 146 VGM-S-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE--LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 146 ~~l-~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE--Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
.+. . ....++...+|++++-+..+++..+.+|+++++|| |+.++|+.. .+.+.++.+ .+.++|+++|+..
T Consensus 64 ~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~--~~~~~i~v~h~~~ 137 (174)
T PRK13695 64 VGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD--SEKPVIATLHRRS 137 (174)
T ss_pred cCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh--CCCeEEEEECchh
Confidence 332 2 22345566899999999999999999999999999 555666554 445555442 2579999999954
Q ss_pred hhhcCCEEEEEeCCEEEEe
Q 024738 222 ELEYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 222 ~~~~~d~v~~l~~G~i~~~ 240 (263)
....+|++..+.+|++...
T Consensus 138 ~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 138 VHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hHHHHHHHhccCCcEEEEE
Confidence 4578999999999998665
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=1.8e-13 Score=118.24 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=85.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+-+|++|+.++|++++|+||||+||||+++++++..--. -| .|||-..... ...+.+..
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G--------~~vpa~~~~i----~~~~~i~~------- 78 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG--------MDVPAKSMRL----SLVDRIFT------- 78 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC--------CccCccccEe----ccccEEEE-------
Confidence 5789999999999999999999999999999998863211 12 1222221100 00000000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSG 209 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-l~~l~~~~~ 209 (263)
.++-.+....--+.++ -|-+++.-+...+.+|+++|+|||++|+|+.....+... +..+.+ ..
T Consensus 79 --------------~~~~~d~~~~~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~ 142 (218)
T cd03286 79 --------------RIGARDDIMKGESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KV 142 (218)
T ss_pred --------------ecCcccccccCcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHH-hc
Confidence 0000000000011111 233333333334578999999999999999998888887 555543 23
Q ss_pred CcEEEEEccCcchhh
Q 024738 210 EVTALWVTHRLEELE 224 (263)
Q Consensus 210 ~~tiiivtH~~~~~~ 224 (263)
+.++|++||+.+.+.
T Consensus 143 ~~~~i~~TH~~el~~ 157 (218)
T cd03286 143 KCLTLFSTHYHSLCD 157 (218)
T ss_pred CCcEEEEeccHHHHH
Confidence 679999999999864
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.3e-13 Score=134.97 Aligned_cols=115 Identities=29% Similarity=0.374 Sum_probs=100.5
Q ss_pred HHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 143 LDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEA--CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 143 l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
|-.+||..+ ++|...+|||||.||+-||..+-.. -=+++||||+.||-+..-.++++.|+++... |-|+|+|.||
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDl--GNTviVVEHD 542 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL--GNTVIVVEHD 542 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 445688753 7899999999999999999998654 3578999999999999999999999999653 6799999999
Q ss_pred cchhhcCCEEEEEe------CCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 220 LEELEYADGAFYME------DGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 220 ~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
.+.+..||+|+-|- .|+|++.|++++++++..+....|+.
T Consensus 543 edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLs 588 (935)
T COG0178 543 EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLS 588 (935)
T ss_pred HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhc
Confidence 99999999999984 78999999999999987777777764
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.52 E-value=2.2e-13 Score=118.66 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=97.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTL-LKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+.++++.+.+++ -+++|+++.|.|+|||||||| +++++++.++... ..|+..+.
T Consensus 7 ~~~~~~ld~~l~g--------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-------~~yi~~e~--- 62 (230)
T PRK08533 7 ELSRDELHKRLGG--------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-------VSYVSTQL--- 62 (230)
T ss_pred EEEEeeeehhhCC--------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-------EEEEeCCC---
Confidence 3566677666653 379999999999999999999 6999998765322 33444221
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCC
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTT 187 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts 187 (263)
+..+.+... ...++..++ .... +.-...+-.+ .+|+++.++-.+++.+.. +|+++++||||+
T Consensus 63 ----~~~~~~~~~-~~~g~~~~~-------~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~ 128 (230)
T PRK08533 63 ----TTTEFIKQM-MSLGYDINK-------KLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSS 128 (230)
T ss_pred ----CHHHHHHHH-HHhCCchHH-------Hhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHHHhcCCCEEEEECccH
Confidence 222222211 111221111 1111 1101112222 367776666565554443 699999999999
Q ss_pred CC----CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--------hh-cCCEEEEEe
Q 024738 188 FL----DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE--------LE-YADGAFYME 233 (263)
Q Consensus 188 ~L----D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~--------~~-~~d~v~~l~ 233 (263)
++ |+..++.+.+.++.+++. |.|++ +||+... ++ .||-|+.|+
T Consensus 129 ~l~~~~d~~~~~~l~~~l~~l~~~--g~tvi-~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 129 LISNDASEVAVNDLMAFFKRISSL--NKVII-LTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhC--CCEEE-EEecccccccccceeEEEeeeEEEEEE
Confidence 99 888888899999888643 55554 4565443 23 378888887
No 435
>PRK01156 chromosome segregation protein; Provisional
Probab=99.52 E-value=9.5e-14 Score=142.14 Aligned_cols=80 Identities=33% Similarity=0.480 Sum_probs=70.1
Q ss_pred CCCCCCChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC-cEEEEEccCcchhhcC
Q 024738 154 RPVQTLSGGQKQRVAI------AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE-VTALWVTHRLEELEYA 226 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~l------Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~-~tiiivtH~~~~~~~~ 226 (263)
.++..|||||++|++| |++++.+|++++|||||++||+..+..+.+++........+ .++|++|||.+++..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 58999999999999999999999999999999865443223 4899999999988899
Q ss_pred CEEEEEe
Q 024738 227 DGAFYME 233 (263)
Q Consensus 227 d~v~~l~ 233 (263)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=99.52 E-value=4.4e-14 Score=137.26 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 158 TLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 158 ~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.|+++.+ +.+||+|||++..+.+||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~---~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE---STQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHhCCEEEEEe
Confidence 589999999999999997 6899999999999999999999999999853 479999999999888999999998
Q ss_pred CC
Q 024738 234 DG 235 (263)
Q Consensus 234 ~G 235 (263)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 74
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.49 E-value=5e-14 Score=120.12 Aligned_cols=67 Identities=31% Similarity=0.383 Sum_probs=54.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 155 PVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 155 ~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+...+|.|++|.+.|+.++...+ .++++|||-++|.|..+..+++.|.+... .+.-+|++||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~--~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK--KNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG--GSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc--cCCEEEEeCccchhc
Confidence 34577999999999998888777 89999999999999999999999988754 246899999998764
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=99.49 E-value=8e-14 Score=142.26 Aligned_cols=80 Identities=31% Similarity=0.418 Sum_probs=70.0
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 153 QRPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 153 ~~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
++++..|||||+| |++||++++.+|+++||||||++||+..+..+.+.|..+... +.+||+|||+.++...|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~--~~~iiiith~~~~~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK--IPQVIIVSHDEELKDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHhC
Confidence 4678899999999 555666788999999999999999999999999999987542 46899999999877889
Q ss_pred CEEEEEeC
Q 024738 227 DGAFYMED 234 (263)
Q Consensus 227 d~v~~l~~ 234 (263)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999973
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.48 E-value=6e-14 Score=107.61 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=53.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ceEEEecCCCCcccccCHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PKSFVFQNPDHQVVMPTVE 118 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~ 118 (263)
.+|++++|++++|++++|+||||||||||++++. +|++.+.+ ..++++|+ .+..+++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~----lf~~ti~ 72 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL----GLEIRLR 72 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh----cchhhHH
Confidence 5899999999999999999999999999999986 78898853 25666665 3456999
Q ss_pred HHHHhh
Q 024738 119 ADVAFG 124 (263)
Q Consensus 119 ~~~~~~ 124 (263)
+|+.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999874
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.47 E-value=8.1e-13 Score=110.30 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred EEEEECCCCCcHHHHHHH-HhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKV-LAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD 144 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~-i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (263)
++.|.||.|+|||||.-- +....+ .| ..+.|+.-+. +..+.+.. +...+++. +.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~--~g-----~~v~~~s~e~-------~~~~~~~~-~~~~g~~~--------~~l~ 57 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA--RG-----EPGLYVTLEE-------SPEELIEN-AESLGWDL--------ERLE 57 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--CC-----CcEEEEECCC-------CHHHHHHH-HHHcCCCh--------HHHH
Confidence 367999999999998753 333322 12 1223332211 22221111 11112321 1233
Q ss_pred HcCCCcccCCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 145 AVGMSNYLQRPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 145 ~~~l~~~~~~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD---~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
..|.....+.++..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+.+. |.|+|+
T Consensus 58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~--g~tvi~ 135 (187)
T cd01124 58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF--GVTTLL 135 (187)
T ss_pred hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC--CCEEEE
Confidence 456556677888999999998 5555556778999999999999999 88888888888887543 689999
Q ss_pred EccCcch---------hh-cCCEEEEEe
Q 024738 216 VTHRLEE---------LE-YADGAFYME 233 (263)
Q Consensus 216 vtH~~~~---------~~-~~d~v~~l~ 233 (263)
++|+... +. .||.++.|+
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998764 43 599999997
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.46 E-value=9.5e-13 Score=123.60 Aligned_cols=169 Identities=23% Similarity=0.185 Sum_probs=119.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
.++.+.++..|... ..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+ +.|..
T Consensus 130 ~~~r~~i~~~l~TG----iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~------iGerg---- 194 (432)
T PRK06793 130 AFEREEITDVFETG----IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISL------VGERG---- 194 (432)
T ss_pred chheechhhccCCC----CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEe------CCCCc----
Confidence 47777888878643 3588885 999999999999999999999999999999998885543 33432
Q ss_pred cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHh-------hCCCEEEEeC
Q 024738 113 VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALA-------EACKVLLLDE 184 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~-------~~p~llllDE 184 (263)
.++.+.+..-+. .-++.. ..=....+.|.|+|+|++.+.+.+ .++-++++|+
T Consensus 195 --~ev~e~~~~~l~------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 195 --REVKDFIRKELG------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred --ccHHHHHHHHhh------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 145554332111 111110 011345788999999999999887 7999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
||+..|+. +++...+.+.-. .|.+..+.||....++.|.+ ...|.|......
T Consensus 255 lTr~a~A~--reisl~~~e~p~--~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPI--GGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCC--CCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 99999996 445555555432 36788888885444554433 468888766543
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=1.1e-12 Score=138.79 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=67.3
Q ss_pred CCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCCcEEEEEccCcchhh
Q 024738 154 RPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD---SGEVTALWVTHRLEELE 224 (263)
Q Consensus 154 ~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~---~~~~tiiivtH~~~~~~ 224 (263)
...+.|||||+| |++||||++.+|++|+|||||++||+.+...+.+.|.++... ..|.+||+||||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345799999999 999999999999999999999999999999999999887421 23679999999999863
Q ss_pred ------cCCEEEEEe
Q 024738 225 ------YADGAFYME 233 (263)
Q Consensus 225 ------~~d~v~~l~ 233 (263)
.|++.+-+.
T Consensus 1275 ~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1275 LLGRSEYVEKFYRLK 1289 (1311)
T ss_pred HHhhccccceeeeee
Confidence 256666554
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.40 E-value=9.6e-13 Score=136.46 Aligned_cols=81 Identities=27% Similarity=0.154 Sum_probs=72.2
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALAE--------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~~--------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
..+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.. .|+||+||||..++.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~--~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA--SGKTIGVISHVEAMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEecHHHHH
Confidence 358899999999999999999996 8999999999999999999999999999864 378999999977776
Q ss_pred h-cCCEEEEEeC
Q 024738 224 E-YADGAFYMED 234 (263)
Q Consensus 224 ~-~~d~v~~l~~ 234 (263)
. +..+|.|-..
T Consensus 1021 ~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1021 ERIPVQIKVKKI 1032 (1047)
T ss_pred HhccceEEEEEC
Confidence 4 6788887765
No 444
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.39 E-value=5e-13 Score=139.20 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=70.1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
.+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+++ +.+||||||+++.+.+||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~---~~~~i~~sh~~~~~~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK---NTQFIVITHNKGTMEVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc---CCEEEEEEcChhHHHHhh
Confidence 45678899999999999999985 67799999999999999999999999998753 358999999999888899
Q ss_pred EEEEEe
Q 024738 228 GAFYME 233 (263)
Q Consensus 228 ~v~~l~ 233 (263)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 987654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.38 E-value=8.8e-12 Score=126.35 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=58.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeCCEEEEecC
Q 024738 174 AEACKVLLLDELTTFL-DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 174 ~~~p~llllDEPts~L-D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~G~i~~~g~ 242 (263)
..+|.++++|||+.+| |+..++.+.+.++++.+. |.+++++||+++.+ +.|++.++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~--~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA--NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 4799999999999999 799999999999998653 56999999999875 3699999999999876654
Q ss_pred h
Q 024738 243 G 243 (263)
Q Consensus 243 ~ 243 (263)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=106.73 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=103.9
Q ss_pred cceecee--eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcCceEEEecCCCCcccccCHHHHHHhhcc-
Q 024738 52 PILRDCS--FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLG- 126 (263)
Q Consensus 52 ~iL~~vs--l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~- 126 (263)
++++++- |++.+ -|+.|+|.||+||||||..|+-.... ..|.=.+.+.+ . .++ ..+.+++.+...
T Consensus 24 Pa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~-~-~s~-------s~l~~~~k~~~~~ 93 (233)
T COG3910 24 PAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGEL-D-ASH-------SALVDYAKLHKRK 93 (233)
T ss_pred hHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCccc-c-ccc-------chHHHhHHHhhcC
Confidence 3444443 45555 58999999999999999988754422 22221111110 0 000 012222222110
Q ss_pred CC--CC-ChHHHHHHHHHHHHHcCC-CcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 024738 127 NL--NL-THDEVRSKVAKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202 (263)
Q Consensus 127 ~~--~~-~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~ 202 (263)
.. ++ -..+.--.+...++.+.= ..+-.+.....|.||-=---+.+.+ +.--++|||||-++|.|.-+..++..|+
T Consensus 94 k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~ 172 (233)
T COG3910 94 KPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILR 172 (233)
T ss_pred CCCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHH
Confidence 00 00 011111111122333221 1234556778999997655555554 4668999999999999999999999999
Q ss_pred HHHhcCCCcEEEEEccCcchhhc-CCEEEEEeCCEE
Q 024738 203 NLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKI 237 (263)
Q Consensus 203 ~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~~G~i 237 (263)
++++. |.-+||+||.+-++.+ --+|+-++.+.+
T Consensus 173 ~la~s--GaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 173 DLADS--GAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred HHHhc--CCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 99764 5789999999998876 567888877754
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.37 E-value=1.9e-12 Score=117.48 Aligned_cols=145 Identities=13% Similarity=0.137 Sum_probs=97.1
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH
Q 024738 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136 (263)
Q Consensus 57 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 136 (263)
+++.+..|+.++|+||+|||||||+++|+++++|..|.+.+. ++.-. .... ...+.+.. .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--------d~~El-~~~~-~~~~~l~~---~------- 196 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--------DTREI-FLPH-PNYVHLFY---S------- 196 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--------Ccccc-CCCC-CCEEEEEe---c-------
Confidence 567888999999999999999999999999999888866553 21100 0000 00000000 0
Q ss_pred HHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 024738 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216 (263)
Q Consensus 137 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiiv 216 (263)
. ........|- .-.++.+|-.+|+++++|||.+ .+.+++++.+.. +..+++.+
T Consensus 197 -------------~-~~~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~--g~~~~i~T 249 (308)
T TIGR02788 197 -------------K-GGQGLAKVTP----KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT--GHPGSITT 249 (308)
T ss_pred -------------C-CCCCcCccCH----HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc--CCCeEEEE
Confidence 0 0000111222 2256778889999999999996 334566665532 23467999
Q ss_pred ccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 217 THRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 217 tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|..+.....+|+..|..|++...|.+.+.+.
T Consensus 250 ~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 250 LHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 99999767799999999999988888887763
No 448
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.30 E-value=5e-12 Score=132.04 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=70.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCE
Q 024738 153 QRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADG 228 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~ 228 (263)
.+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.. +..+|++||+...+..||+
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~---~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG---EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC---CCeEEEEECcHHHHHhcce
Confidence 45677999999999999999985 7899999999999999999999999998743 3579999999987889999
Q ss_pred EEEEeC
Q 024738 229 AFYMED 234 (263)
Q Consensus 229 v~~l~~ 234 (263)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987764
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.30 E-value=3.5e-11 Score=97.05 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=79.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|.||||+|||||++.+++...+..|.| .|+..+.. ......+... . ......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v------~~~~~e~~----~~~~~~~~~~-~------------~~~~~~-- 55 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV------VYVDIEEE----IEELTERLIG-E------------SLKGAL-- 55 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE------EEEECCcc----hHHHHHHHhh-h------------hhcccc--
Confidence 478999999999999999999887655544 34444321 1112221100 0 000000
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT----------FLDESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts----------~LD~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
+............+.++.++++.+++...+|+++++|||++ +.|......+.+++... ++ .+.|+|+
T Consensus 56 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~-~~~~vv~ 132 (165)
T cd01120 56 -DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RK-GGVTVIF 132 (165)
T ss_pred -ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hc-CCceEEE
Confidence 11112222333455666778889999999999999999995 44555455555555443 33 4789999
Q ss_pred EccCcch
Q 024738 216 VTHRLEE 222 (263)
Q Consensus 216 vtH~~~~ 222 (263)
++|....
T Consensus 133 ~~~~~~~ 139 (165)
T cd01120 133 TLQVPSG 139 (165)
T ss_pred EEecCCc
Confidence 9998754
No 450
>PRK02224 chromosome segregation protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=126.61 Aligned_cols=80 Identities=33% Similarity=0.378 Sum_probs=68.7
Q ss_pred CCCCCChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 155 PVQTLSGGQKQ------RVAIAGALAEA-----C-KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 155 ~~~~LSgGqkq------Rv~lAral~~~-----p-~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
++..|||||++ |+++|++++.+ | +++||||||++||+..+..+.++|..+... +..+||+||||.+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CCCeEEEEECChHH
Confidence 46799999999 89999998864 2 679999999999999999999999988532 22479999999999
Q ss_pred hhcCCEEEEEeCC
Q 024738 223 LEYADGAFYMEDG 235 (263)
Q Consensus 223 ~~~~d~v~~l~~G 235 (263)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 8889999999743
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.22 E-value=2.7e-11 Score=115.38 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=104.4
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
++++.++.+++|.+++++|||||||||++..|++.+.+..|.. +++++.+++. -.++.+++.+.....+...
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt~----RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDSY----RIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCcc----chhHHHHHHHHHHHhCCCe
Confidence 5667778888999999999999999999999999887777742 4678888762 2377888877554443332
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ-RVAIAGALAEAC-----KVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq-Rv~lAral~~~p-----~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
.......+......++.+.....+.+...+++- .+.-+.+++.++ .+|+||.++.+-+ +.+.++.+..
T Consensus 317 ~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~------l~~i~~~f~~ 390 (484)
T PRK06995 317 HAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT------LNEVVQAYRG 390 (484)
T ss_pred eccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH------HHHHHHHhcc
Confidence 222222333444556665545556664434432 223344445554 6899999988733 3344444432
Q ss_pred cCCCcEEEEEccCcchh------hc----CCEEEEEeCCEEE
Q 024738 207 DSGEVTALWVTHRLEEL------EY----ADGAFYMEDGKIV 238 (263)
Q Consensus 207 ~~~~~tiiivtH~~~~~------~~----~d~v~~l~~G~i~ 238 (263)
.+.+-+|.|+--+.. .. -=-|.++..|+-+
T Consensus 391 --~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 391 --PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred --CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 234556667633211 21 2346777777644
No 452
>PRK00064 recF recombination protein F; Reviewed
Probab=99.22 E-value=3.1e-11 Score=111.79 Aligned_cols=77 Identities=31% Similarity=0.437 Sum_probs=66.6
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c
Q 024738 156 VQTLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y 225 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~ 225 (263)
...+|.||+|+++||++|+ .+|+++|||||+++||+..+..+++.+.++ +..++++||+.+.+. .
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~-----~~qv~it~~~~~~~~~~ 345 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL-----GAQVFITTTDLEDLADL 345 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc-----CCEEEEEcCChhhhhhh
Confidence 3689999999999999986 799999999999999999999999988754 237899999987763 3
Q ss_pred --CCEEEEEeCCEE
Q 024738 226 --ADGAFYMEDGKI 237 (263)
Q Consensus 226 --~d~v~~l~~G~i 237 (263)
.++++.|++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 468999999987
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.21 E-value=2.1e-10 Score=99.73 Aligned_cols=153 Identities=17% Similarity=0.200 Sum_probs=91.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLA-GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 138 (263)
=+++|.++.|.|++|||||||...++ +..+ ..+ ++.|+..+.. . ..+..++. ..++.-.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~------~~~y~~~e~~---~-~~~~~~~~----~~g~~~~~~~-- 83 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK------KVYVITTENT---S-KSYLKQME----SVKIDISDFF-- 83 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC------EEEEEEcCCC---H-HHHHHHHH----HCCCChhHHH--
Confidence 57899999999999999999997764 3322 222 2344444321 1 12222221 1122211100
Q ss_pred HHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--ACKVLLLDELTTF---LDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 139 ~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~llllDEPts~---LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
... .+.+-+..-......|.++.+.+..++.++. +|+++++||||+. .|......+++.++.+.+ .+.|+
T Consensus 84 ~~g---~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~--~g~tv 158 (234)
T PRK06067 84 LWG---YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD--LGKTI 158 (234)
T ss_pred hCC---CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh--CCCEE
Confidence 000 0111111112234567889999999999987 9999999999964 455555556555665543 36799
Q ss_pred EEEccCcch-------hh-cCCEEEEEeC
Q 024738 214 LWVTHRLEE-------LE-YADGAFYMED 234 (263)
Q Consensus 214 iivtH~~~~-------~~-~~d~v~~l~~ 234 (263)
++++|+... +. .+|-++.|+.
T Consensus 159 llt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 159 LITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred EEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 999997654 33 4787887773
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.18 E-value=1.9e-11 Score=115.27 Aligned_cols=46 Identities=30% Similarity=0.462 Sum_probs=43.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEEcC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVYVKR 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~~ 99 (263)
.+|++|||++++||+++|+|||||||||||| +|+..|++| +|.+++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg 66 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA 66 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence 5899999999999999999999999999999 788889888 799975
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.15 E-value=2.3e-10 Score=99.91 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE--------cCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~--------~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 135 (263)
|.+..|+||.|+|||||+-.++=-. ..|.=.+ .+++-|+.- ..+..+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~~~~~~~~~~Vlyi~~----------------------Ed~~~~i 56 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGGGLKVTEPGRVVYLSA----------------------EDPREEI 56 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCCccccCCCceEEEEEC----------------------CCCHHHH
Confidence 6788999999999999986664211 1111000 011111111 1122334
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHH----------------HHhhCCCEEEEeCCCCC------CCHHH
Q 024738 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAG----------------ALAEACKVLLLDELTTF------LDESD 193 (263)
Q Consensus 136 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAr----------------al~~~p~llllDEPts~------LD~~~ 193 (263)
.+++..+...+++.+..++... .+|+.|++.+++ +...+|+++|+| |+++ +|+..
T Consensus 57 ~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~ 133 (239)
T cd01125 57 HRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGA 133 (239)
T ss_pred HHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHH
Confidence 4556666666665443333322 245666655544 446799999999 8764 79999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
...+++.|.+++++ .|++||+++|..
T Consensus 134 ~~~~~~~L~~~a~~-~g~avl~v~H~~ 159 (239)
T cd01125 134 MDAVIKALRRIAAQ-TGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHHHHHHH-hCCEEEEEeccC
Confidence 99999999998764 478999999976
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.13 E-value=6.6e-11 Score=100.24 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|.||||||||||.++|++++ ..|.+ .+++++... ... ...+........+........+...+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~------~v~~~D~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV------VIISQDSYY-KDL-SHEELEERKNNNYDHPDAFDFDLLISHLQD 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe------EEEEecccc-ccc-ccccHHHhccCCCCCCCcccHHHHHHHHHH
Confidence 58999999999999999999988 23333 344444311 101 111111111111111111122344566777
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~ 192 (263)
+......+.+..++|.|++++..+ .+.+++++|+|+|+.+.++.
T Consensus 71 l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 71 LKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 777667788889999999887655 57889999999999999873
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.11 E-value=4.5e-10 Score=95.60 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=70.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEc-CceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVK-RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKAL 143 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~-~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (263)
++.|.||+||||||+++.+++.+.+. .|.|... ..+-+..+... + + ...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~------~------~-i~q---------------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKR------S------L-INQ---------------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCcc------c------e-eee----------------
Confidence 68999999999999999988887643 4555331 11111111000 0 0 000
Q ss_pred HHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 144 DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 144 ~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
..++.. ...++. +++++|..+|+++++|||. |+.....+++ .+. .|..++.++|..+..
T Consensus 54 ~~vg~~------~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~--~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 54 REVGLD------TLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE--TGHLVMSTLHTNSAA 112 (198)
T ss_pred cccCCC------ccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH--cCCEEEEEecCCcHH
Confidence 000110 111211 5889999999999999996 6665433332 332 257899999998766
Q ss_pred hcCCEEEEEe
Q 024738 224 EYADGAFYME 233 (263)
Q Consensus 224 ~~~d~v~~l~ 233 (263)
...+|++.+.
T Consensus 113 ~~~~Rl~~l~ 122 (198)
T cd01131 113 KTIDRIIDVF 122 (198)
T ss_pred HHHhHHHhhc
Confidence 6667766553
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.06 E-value=5.2e-11 Score=114.33 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=95.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH-hhccC---------
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVL--AGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA-FGLGN--------- 127 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~-~~~~~--------- 127 (263)
=+++|.++.|.|++|||||||..-+ .|+.++.+.-+++. +++.. ..+..|.. +++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs------~eE~~-----~~l~~~~~~~G~~~~~~~~~g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT------FEESP-----QDIIKNARSFGWDLQKLVDEGKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE------EecCH-----HHHHHHHHHcCCCHHHHhhcCce
Confidence 4789999999999999999999755 46655444444432 11110 01222211 11000
Q ss_pred --CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 128 --LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA--GALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 128 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA--ral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
...... .....+++.+++++.+++....+|+|++|||.|+ .+|...|+.. ...++.++++++.
T Consensus 86 ~~~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~ 152 (484)
T TIGR02655 86 FILDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVAR 152 (484)
T ss_pred EEEecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHH
Confidence 000000 0111234556777777888899999999999999 5666665544 5677888888888
Q ss_pred HHhcCCCcEEEEEccCcch--------h-h-cCCEEEEEe
Q 024738 204 LLGDSGEVTALWVTHRLEE--------L-E-YADGAFYME 233 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~--------~-~-~~d~v~~l~ 233 (263)
+.+ .|+|+|++||+.+. + + .||.|+.|+
T Consensus 153 L~~--~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 153 LKQ--IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHH--CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 754 47899999998764 2 4 489999887
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.04 E-value=8.6e-09 Score=79.84 Aligned_cols=119 Identities=26% Similarity=0.367 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
++..+.|+||+||||||+++.++..+.... +-+.+.. +.. . ........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~-------~~~--~-~~~~~~~~-------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-------EDI--L-EEVLDQLL-------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC-------EEc--c-ccCHHHHH--------------------
Confidence 367899999999999999999999886654 2222211 100 0 00111100
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-----HHHHHhcCCCcEEEEE
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-----VKNLLGDSGEVTALWV 216 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-----l~~l~~~~~~~tiiiv 216 (263)
...........++++..+..+++|-..+|+++++||+..-.+.......... ...... ..+..+|.+
T Consensus 51 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 122 (148)
T smart00382 51 -------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS-EKNLTVILT 122 (148)
T ss_pred -------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh-cCCCEEEEE
Confidence 1122233456788888888888888888999999999999999988766541 122222 234688888
Q ss_pred ccC
Q 024738 217 THR 219 (263)
Q Consensus 217 tH~ 219 (263)
+|.
T Consensus 123 ~~~ 125 (148)
T smart00382 123 TND 125 (148)
T ss_pred eCC
Confidence 884
No 460
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.04 E-value=7.7e-10 Score=113.69 Aligned_cols=81 Identities=32% Similarity=0.377 Sum_probs=71.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 153 QRPVQTLSGGQKQRVAIAGALA------EA--CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~------~~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
-+++..|||||+=.++||.+|+ .+ -++++|||||.+||+.....+++.|..+... +.+|+||||+.++.+
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e 887 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKE 887 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHH
Confidence 3788999999999888887765 45 7999999999999999999999999998653 679999999999999
Q ss_pred cCCEEEEEeCC
Q 024738 225 YADGAFYMEDG 235 (263)
Q Consensus 225 ~~d~v~~l~~G 235 (263)
.+|.++.+...
T Consensus 888 ~~~~~i~V~k~ 898 (908)
T COG0419 888 RADVRIRVKKD 898 (908)
T ss_pred hCCeEEEEEec
Confidence 99999988653
No 461
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=7.9e-10 Score=102.57 Aligned_cols=62 Identities=31% Similarity=0.384 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 157 QTLSGGQKQRVAIAGALAE---------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~---------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
..+|.||+|+++||.+|+. +|++||||||+++||+..+..+++.|.+. |.+++++||+.+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~-----~~qv~it~~~~~~~ 344 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL-----GVQVFVTAISLDHL 344 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc-----CCEEEEEecChhhc
Confidence 3899999999999999999 99999999999999999999999998753 45899999998764
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.97 E-value=4.2e-09 Score=99.41 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=55.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
..++.+++++.|... ..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+
T Consensus 138 ~~~~r~~v~~~l~TG----i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 138 PAMTRARVETGLRTG----VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred CCeEeecceEEcCCC----cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 479999999999753 46899996 99999999999999999999999999999999998876
No 463
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.96 E-value=2.7e-09 Score=100.93 Aligned_cols=173 Identities=17% Similarity=0.106 Sum_probs=100.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc-cccC-----HHHHHHhh
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV-VMPT-----VEADVAFG 124 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~-~~~t-----v~~~~~~~ 124 (263)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.+...+ +...... +... ..++..+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG------~r~~ev~~~~~~~~~~~~l~~tvvv 223 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIG------ERGREVREFIEHDLGEEGLKRSVVV 223 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEe------ecchHHHHHHHHHhcccccceEEEE
Confidence 3689999 99999999999999999999999999999999877554321 1110000 0000 00000000
Q ss_pred ccCCCCChHHH------HHHHHHHHHHcCCCcccCCCCCCCCh-HHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHH
Q 024738 125 LGNLNLTHDEV------RSKVAKALDAVGMSNYLQRPVQTLSG-GQKQRVAIAGALAEACKVLLLDEL--TTFLDESDQF 195 (263)
Q Consensus 125 ~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LSg-GqkqRv~lAral~~~p~llllDEP--ts~LD~~~~~ 195 (263)
......+.... --.+.+.+...|-+-++ -..+|+- -|.+| .++ +.+.|| +.|+|+....
T Consensus 224 ~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll--~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp~~~~ 291 (440)
T TIGR01026 224 VATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLL--LMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTPSVFS 291 (440)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE--EEeChHHHHHHHH-HHH---------HhcCCCCcccccChhHHH
Confidence 00001111100 01111222222332110 1122321 12222 111 345675 5699999999
Q ss_pred HHHHHHHHHHhcCCCc-------EEEEEccCcchhhcCCEEEEEeCCEEEEecChhh
Q 024738 196 GVIEAVKNLLGDSGEV-------TALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 196 ~l~~~l~~l~~~~~~~-------tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
.+.+++.+.... +. ||++.+||+. -..||++..+.+|+++.+.+.++
T Consensus 292 ~l~~l~ERag~~--~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 292 TLPRLLERAGAS--GKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HHHHHHHHhccC--CCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 999999886532 45 7888999873 23689999999999999887654
No 464
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.95 E-value=1.7e-09 Score=110.06 Aligned_cols=136 Identities=24% Similarity=0.290 Sum_probs=87.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+=+|++|. +.+.++.|.|||.+||||+||.++-+. -..-| .|||-.... . ++.+.
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G--------~~VPa~~a~---i-~~~d~---------- 652 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG--------SFVPAESAR---I-GIVDR---------- 652 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC--------CceeccceE---e-cccCe----------
Confidence 366788888 778899999999999999999987542 11112 234433210 0 11111
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHH
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--ACKVLLLDEL---TTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~llllDEP---ts~LD~~~~~~l~~~l~~l~ 205 (263)
++.++|-. +.....+|.=|.....++.+|-. ++.++|+||| |+.+|-.+ ..+.++..+.
T Consensus 653 -----------I~triga~---d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~ 716 (854)
T PRK05399 653 -----------IFTRIGAS---DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLH 716 (854)
T ss_pred -----------eeeccCcc---cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHH
Confidence 11122222 12234577777777888887766 9999999999 88888444 3455555554
Q ss_pred hcCCCcEEEEEccCcchhhcCC
Q 024738 206 GDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~~~d 227 (263)
+. .+.++|++||+.+..+.++
T Consensus 717 ~~-~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 717 DK-IGAKTLFATHYHELTELEE 737 (854)
T ss_pred hc-CCceEEEEechHHHHHHhh
Confidence 42 2478999999966555544
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.91 E-value=2.4e-09 Score=90.15 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=42.2
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 45566778999999999999999999999999999999999998853
No 466
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.89 E-value=3.3e-09 Score=112.72 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=55.1
Q ss_pred cCCCCCCCChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 152 LQRPVQTLSGGQKQRVA----IAGA--------LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~----lAra--------l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
.++.++.||||||||++ +|++ +..+|+++||||||+|||+.++..++++|.++ +.++||+||+
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l-----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL-----DLDFVMTSER 1315 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh-----CCCEEEEccc
Confidence 35557899999999996 5755 45899999999999999999999999999987 4688999986
Q ss_pred c
Q 024738 220 L 220 (263)
Q Consensus 220 ~ 220 (263)
+
T Consensus 1316 ~ 1316 (1353)
T TIGR02680 1316 E 1316 (1353)
T ss_pred h
Confidence 4
No 467
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.87 E-value=8.9e-09 Score=92.08 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEE
Q 024738 157 QTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYM 232 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l 232 (263)
.+||-|+.+-+++|.+|. ..|.++++|||-.+|-|..-..+...+++.++. .-||++||...+++ . ...+++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~---sQv~VsTHS~rLl~~~e~~~v~~~ 345 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR---SQVIVSTHSPRLLNAVEEHSVFWL 345 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc---ceEEEEeCCHHHHhhccccceEEe
Confidence 399999999999999998 479999999999999999999999999987653 26999999999985 3 3444444
No 468
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.87 E-value=4.4e-09 Score=99.30 Aligned_cols=109 Identities=19% Similarity=0.203 Sum_probs=72.1
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC-------------------ceEEE-----e
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR-------------------PKSFV-----F 105 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~-------------------~~~~v-----~ 105 (263)
..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+.| +.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3589998 99999999999999999999999999999854 445555421 24555 7
Q ss_pred cCCCCcccccCHHHHHHhhccCCCC---ChHHHHHHHHHHHHHcCCC-----cccCCCCCCCC
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNL---THDEVRSKVAKALDAVGMS-----NYLQRPVQTLS 160 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LS 160 (263)
|+|...+...-+...++..+...+. ...+...++.++++.+++. .....+|+.||
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 7764332211122222222222222 1245567788899999983 45677888877
No 469
>PRK14079 recF recombination protein F; Provisional
Probab=98.86 E-value=5.6e-09 Score=96.38 Aligned_cols=77 Identities=27% Similarity=0.259 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 157 QTLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
..+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.|... . .++|.+| +....||
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~--q~~it~t---~~~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---P--QAIVAGT---EAPPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---C--cEEEEcC---CCCCCCc
Confidence 478999999999999999 899999999999999999999999888643 1 1333333 3345799
Q ss_pred EEEEEeCCEEEEec
Q 024738 228 GAFYMEDGKIVMQA 241 (263)
Q Consensus 228 ~v~~l~~G~i~~~g 241 (263)
+++.+.+|++.-+.
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999875443
No 470
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.86 E-value=7.4e-09 Score=83.33 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=76.1
Q ss_pred EEEECCCCCcHHHHHHHHh--CCCCCCceEEEEcCce-------EEEecC-CCCccc----------cc------CHHHH
Q 024738 67 WMLLGPNGCGKSTLLKVLA--GLLKPTNGHVYVKRPK-------SFVFQN-PDHQVV----------MP------TVEAD 120 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~--Gl~~p~~G~I~~~~~~-------~~v~q~-~~~~~~----------~~------tv~~~ 120 (263)
++|+|++|||||||++.|+ +..++.+|++.....+ .+.+-+ |..... .. +..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 6899999999999999999 7777777764322111 111111 211000 00 01111
Q ss_pred HHhhccC--CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHH
Q 024738 121 VAFGLGN--LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGAL-----AEACKVLLLDELTTFLDES 192 (263)
Q Consensus 121 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral-----~~~p~llllDEPts~LD~~ 192 (263)
+...+.. ...........+.+++..++.. -..-.+...+|.+++++....... ...|+++ |+|++|..
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~ 157 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQ 157 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCC
Confidence 1111000 1111112234455667776654 223344677899998887666553 3445655 99999999
Q ss_pred HHHHHHHHHHHH
Q 024738 193 DQFGVIEAVKNL 204 (263)
Q Consensus 193 ~~~~l~~~l~~l 204 (263)
+..++++.|.++
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999888764
No 471
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.86 E-value=1.5e-08 Score=100.01 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (263)
..+.++|+||||||||||++++.++.++..|+=... ...|+..+.....+......+..++. . .+.....+.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~-~~~fv~i~~~~l~~d~~~i~~~llg~----~-~~~~~~~a~~~ 247 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE-DAPFVEVDGTTLRWDPREVTNPLLGS----V-HDPIYQGARRD 247 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC-CCCeEEEechhccCCHHHHhHHhcCC----c-cHHHHHHHHHH
Confidence 356799999999999999999999987665541111 11233332211111001111222221 1 12222345566
Q ss_pred HHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 143 l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
++.+|+.......+.++||| +|++|| +..||+..+..+++.+.+
T Consensus 248 l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 248 LAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 88889988888899999999 999999 799999999999999875
No 472
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.84 E-value=9.6e-08 Score=83.49 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=36.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
.+..++|+||+..|=++.....+...+.+...+..+..+|++||+.+..+
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 45779999999999999988877766665444323568899999998754
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.84 E-value=1.2e-08 Score=107.41 Aligned_cols=148 Identities=18% Similarity=0.275 Sum_probs=82.7
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~ 133 (263)
.=+++..+.+++++|+|++|+|||||++.+++.+ ...+|.+++++. ++.+....+........+... .
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~--~v~~~~~~~~~~~~~~~~~~~---------~ 266 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA--FISKSMEIYSSANPDDYNMKL---------H 266 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc--ccccchhhcccccccccchhH---------H
Confidence 3356778899999999999999999999996654 456888877541 222211000000000000000 0
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCCcE
Q 024738 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG-DSGEVT 212 (263)
Q Consensus 134 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~~~~~t 212 (263)
...+.+.++++..++. +..+ ++.++| |..++-+|+||+- |... .++.+..... ...|.+
T Consensus 267 l~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~L~~~~~~~~~Gsr 326 (1153)
T PLN03210 267 LQRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDALAGQTQWFGSGSR 326 (1153)
T ss_pred HHHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHHHHhhCccCCCCcE
Confidence 0112233344433332 2222 555555 4467778888983 3332 3344443221 124679
Q ss_pred EEEEccCcchhh-c-CCEEEEEe
Q 024738 213 ALWVTHRLEELE-Y-ADGAFYME 233 (263)
Q Consensus 213 iiivtH~~~~~~-~-~d~v~~l~ 233 (263)
||++|||...+. . +|+++.+.
T Consensus 327 IIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 327 IIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEeCcHHHHHhcCCCeEEEec
Confidence 999999999875 3 78877664
No 474
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.82 E-value=2.8e-09 Score=92.27 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
=+++|++++|.|++|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58999999999999999999987554
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.82 E-value=7.5e-08 Score=97.85 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeC
Q 024738 172 ALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMED 234 (263)
Q Consensus 172 al~~~p~llllDEPts~LD-~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~ 234 (263)
.+..+|.++++|||...|| +...+.+.+.++.+.+. |..++++||+++.+ +.|...++|-+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~--~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL--NTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 3457899999999999999 88888999999988643 46899999998763 23566566655
No 476
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.80 E-value=1.9e-07 Score=95.44 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=46.9
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 169 IAGALAEACKVLLLDELTTFL-DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 169 lAral~~~p~llllDEPts~L-D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
|++++..+|.++++|||+.+| |+..+..+.+.++.+++. |.+++++||+++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~--g~~vil~TQs~~d~ 733 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA--NCLVLMATQSLSDA 733 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH
Confidence 577888999999999999999 799999999999988653 56999999999976
No 477
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.76 E-value=4.6e-08 Score=81.89 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCC-cccCCCCCCCChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 138 KVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA--IAGALAE-ACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 138 ~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~--lAral~~-~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. +++++ |+|++|..+.+++.+.|.++.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 445666766765 3344567789999999987 5555544 34443 9999999999999999998765
No 478
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.74 E-value=1.3e-08 Score=95.86 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=39.2
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 4699999 99999999999999999999999999999988754
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.71 E-value=6.1e-08 Score=89.29 Aligned_cols=113 Identities=26% Similarity=0.335 Sum_probs=67.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
.++.++.|.||+||||||+++.+.+.+. +.+|.|.. ..+|..+. . .+ ...... .
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t-------iEdp~E~~-~----~~------~~~~i~---q---- 174 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT-------IEDPIEYV-H----RN------KRSLIN---Q---- 174 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE-------EcCChhhh-c----cC------ccceEE---c----
Confidence 5688999999999999999999998665 34565532 12221000 0 00 000000 0
Q ss_pred HHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 141 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
...|.. ..+ -.-++++||-.+|+++++||+. |+.+....++. +. .|.+++.+.|..
T Consensus 175 ---~evg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~--tGh~v~~T~Ha~ 230 (343)
T TIGR01420 175 ---REVGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTA----AE--TGHLVFGTLHTN 230 (343)
T ss_pred ---cccCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HH--cCCcEEEEEcCC
Confidence 000110 011 1225778899999999999997 88877544332 22 367899999985
Q ss_pred chh
Q 024738 221 EEL 223 (263)
Q Consensus 221 ~~~ 223 (263)
+..
T Consensus 231 ~~~ 233 (343)
T TIGR01420 231 SAA 233 (343)
T ss_pred CHH
Confidence 543
No 480
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.63 E-value=5.6e-08 Score=90.45 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=48.6
Q ss_pred eEEEEeEEEEECCCcccccccee-----------ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILR-----------DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~-----------~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.++++||++.|++. ..+|+ |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~e----r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNE----RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCc----cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 69999999999864 25786 99999999999999999999999999999997754
No 481
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.59 E-value=1.7e-07 Score=73.36 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (263)
.+..+.|.||.|+|||||++.++.........+ .++.... .. . ...... ....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v------~~~~~~~----~~-~--~~~~~~--------------~~~~ 70 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF------LYLNASD----LL-E--GLVVAE--------------LFGH 70 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe------EEEehhh----hh-h--hhHHHH--------------Hhhh
Confidence 578999999999999999999999875222222 1221110 00 0 000000 0000
Q ss_pred HHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCCcEEEEEccC
Q 024738 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD---SGEVTALWVTHR 219 (263)
Q Consensus 143 l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~---~~~~tiiivtH~ 219 (263)
. .+......+...++.++++||.-.. ++.....+.+.+...... ..+.++|+++++
T Consensus 71 ~--------------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 71 F--------------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred h--------------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 0 5566667777889999999998665 566667778888776431 246788999987
Q ss_pred cc
Q 024738 220 LE 221 (263)
Q Consensus 220 ~~ 221 (263)
..
T Consensus 130 ~~ 131 (151)
T cd00009 130 PL 131 (151)
T ss_pred cc
Confidence 65
No 482
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.59 E-value=6.4e-08 Score=91.25 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=54.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.++.++++..|... ..+++++ |++.+|+.++|+|+||+|||||+++|+|+..|+.|.+.+.|
T Consensus 129 ~~~r~~v~~~l~tG----i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLMTG----IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG 190 (433)
T ss_pred ceeccCHhheeCCC----ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEEC
Confidence 58888888888543 4699999 99999999999999999999999999999999988766543
No 483
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.58 E-value=5.8e-08 Score=93.32 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=53.6
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
+.|+++.|+.. .+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+..
T Consensus 187 ~~d~~~v~Gq~-----~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 187 QHDLSDVIGQE-----QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred ccCeEEEECcH-----HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 45888888764 489999999999999999999999999999999999999999988753
No 484
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.57 E-value=8.4e-08 Score=71.48 Aligned_cols=51 Identities=33% Similarity=0.435 Sum_probs=39.2
Q ss_pred CCCCCCCChHHHHH-HHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 153 QRPVQTLSGGQKQR-VAIAGAL------AE------ACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 153 ~~~~~~LSgGqkqR-v~lAral------~~------~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
.+..+.+||||+|. +.+|.++ .. .|.+++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46778999999954 3333332 23 3799999999999999999999998864
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.57 E-value=6.4e-08 Score=66.88 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=31.9
Q ss_pred eeceeeEEeC-CCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 024738 54 LRDCSFSVPS-GQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92 (263)
Q Consensus 54 L~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 92 (263)
+++.++++.+ |.++.|.||||||||||+.+|.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4566778876 56999999999999999999887766544
No 486
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.56 E-value=1.1e-07 Score=86.84 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=42.1
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+..
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~ 102 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL 102 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 4699999 999999999999999999999999999999998876644
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.54 E-value=6.8e-08 Score=80.78 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5999999999999999999999999876
No 488
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.50 E-value=2.3e-07 Score=78.03 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=88.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|+|..||||||+.+.+.-.. |-..++ -+ .+...+... + . .-..++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~-------~D--------~~~~~~~~~----~---~---~~~~~i~~~ 51 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVID-------AD--------KIAHQVVEK----G---S---PAYEKIVDH 51 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEe-------CC--------HHHHHHHhc----C---C---hHHHHHHHH
Confidence 47999999999999999988653 111111 00 111111110 0 0 112234455
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--h
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE--L 223 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~--~ 223 (263)
+|-+ ..+. -|+-+|..||.++..+|+.+..+| +.+||..++.+.+.+.+... .|.+||+.+|.+.+ +
T Consensus 52 fg~~-i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~--~~~~vvi~~pll~e~~~ 120 (188)
T TIGR00152 52 FGAQ-ILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS--KLAYVLLDVPLLFENKL 120 (188)
T ss_pred HCHH-HhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc--CCCEEEEEchHhhhCCc
Confidence 5522 1111 388999999999999999998887 88999999999999988642 24689999999965 4
Q ss_pred -hcCCEEEEEeCC
Q 024738 224 -EYADGAFYMEDG 235 (263)
Q Consensus 224 -~~~d~v~~l~~G 235 (263)
..||.+++++.+
T Consensus 121 ~~~~D~vv~V~~~ 133 (188)
T TIGR00152 121 RSLCDRVIVVDVS 133 (188)
T ss_pred HHhCCEEEEEECC
Confidence 479999998865
No 489
>PRK08149 ATP synthase SpaL; Validated
Probab=98.49 E-value=1.9e-07 Score=87.99 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=41.6
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEEc
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN---GHVYVK 98 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~ 98 (263)
..+++++ |++.+|++++|+|+||+|||||+++|++...++. |.|..+
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~r 188 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGER 188 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeC
Confidence 3699999 9999999999999999999999999999988875 555443
No 490
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.47 E-value=2.3e-07 Score=87.80 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=43.6
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
..+++++ |++.+|++++|+|+||+|||||+++|+|..+++.|.|.+.+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iG 198 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIG 198 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEc
Confidence 4689999 99999999999999999999999999999999988776543
No 491
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=1.2e-06 Score=81.42 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=41.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
+++++.++.+++|++++++||||+||||++..|++......|. .+++++..+.
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----~~V~lit~D~ 177 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----SKVALLTTDS 177 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----CeEEEEeccc
Confidence 4678888999999999999999999999999999865323231 2456666554
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.46 E-value=1.1e-07 Score=81.23 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
++|++++|+||||||||||++.|++++++ ..++++.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccc
Confidence 57999999999999999999999999875 2345566654
No 493
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.45 E-value=3.1e-06 Score=86.28 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=48.3
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeCCE
Q 024738 174 AEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMEDGK 236 (263)
Q Consensus 174 ~~~p~llllDEPts~LD-~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~G~ 236 (263)
-.+|.++++|||+.+|| +..+..+.+.++.+.+. |.+++++||+++.+ +.|+..++|.+.+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~--~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK--NVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 35899999999999999 78888899999887643 56999999998743 2366667776643
No 494
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.45 E-value=2.1e-06 Score=81.97 Aligned_cols=140 Identities=22% Similarity=0.267 Sum_probs=79.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
=+.+|+++.|.|++|+|||||+..++.......+.+ .|+.-+. +..+ +...+...++..+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kv------lYvs~EE-------s~~q-i~~ra~rlg~~~~------ 149 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKV------LYVSGEE-------SLQQ-IKMRAIRLGLPEP------ 149 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcE------EEEECcC-------CHHH-HHHHHHHcCCChH------
Confidence 589999999999999999999998877654443333 2333211 1111 1111111111110
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCC
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL---------DESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L---------D~~~~~~l~~~l~~l~~~~~~ 210 (263)
.+.+ ..+.+-. +-. +.+--.+|+++++|.-++=. +....+++...|.+++++ .|
T Consensus 150 -----~l~~-------~~e~~~~--~I~--~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~-~g 212 (454)
T TIGR00416 150 -----NLYV-------LSETNWE--QIC--ANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT-RG 212 (454)
T ss_pred -----HeEE-------cCCCCHH--HHH--HHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH-hC
Confidence 1101 0111111 111 11123589999999865421 123345566667777664 47
Q ss_pred cEEEEEccCcch--------hh-cCCEEEEEeCCE
Q 024738 211 VTALWVTHRLEE--------LE-YADGAFYMEDGK 236 (263)
Q Consensus 211 ~tiiivtH~~~~--------~~-~~d~v~~l~~G~ 236 (263)
.|+++++|.... ++ .+|.|+.|+.++
T Consensus 213 iTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 213 IAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred CEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 999999996543 44 589999998654
No 495
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.45 E-value=3.5e-06 Score=74.63 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=82.2
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHH-Hh--hccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADV-AF--GLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~-~~--~~~~~ 128 (263)
+.|+.+.--+.+|+++.|.|++|+|||||+..++--.-...| ..+.|+.-+... ..+...+ .. +....
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-----~~vl~iS~E~~~----~~~~~r~~~~~~~~~~~ 88 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG-----VRVGTISLEEPV----VRTARRLLGQYAGKRLH 88 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-----ceEEEEEcccCH----HHHHHHHHHHHhCCCcc
Confidence 468888878999999999999999999999877654322212 123343332110 0111111 11 11100
Q ss_pred CCC--hHHHHHHHHHHHHHcC-CCc-ccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH--------HHH
Q 024738 129 NLT--HDEVRSKVAKALDAVG-MSN-YLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDE--------SDQ 194 (263)
Q Consensus 129 ~~~--~~~~~~~~~~~l~~~~-l~~-~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~--------~~~ 194 (263)
... .....+.+..+++.+. ... ........++- ..-+..++.++ .+|+++++|..+.-.+. ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~ 166 (271)
T cd01122 89 LPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSM--DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKAL 166 (271)
T ss_pred cCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCH--HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHH
Confidence 000 0111223333444332 111 11112222222 33445555444 48999999997664432 123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
..++..|++++++ .++||++++|-
T Consensus 167 ~~~~~~L~~la~~-~~vtvll~sq~ 190 (271)
T cd01122 167 DEIMTKLRGFATE-HGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHHHH-hCCEEEEEecc
Confidence 4566777777664 47899999983
No 496
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.43 E-value=2.4e-07 Score=87.53 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=42.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
..+++++ |++.+|+.++|+|+||+|||||+++|+|...|+.|.+..
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 178 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL 178 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 3689999 999999999999999999999999999999999887755
No 497
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.42 E-value=1.8e-06 Score=87.96 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
+.++.++|+||+..|-|+.....+...+.+...+..+..++++||..+...
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 468899999999777666665554443333222223568899999987644
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1.7e-06 Score=76.71 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=32.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..|.+++| ++.|+.+.|+||+|+|||+|+.+|+....
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35778888 99999999999999999999999976543
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.40 E-value=2.2e-07 Score=78.90 Aligned_cols=28 Identities=46% Similarity=0.603 Sum_probs=26.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++|++++|+||+|||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 500
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.40 E-value=7.7e-07 Score=78.47 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=34.2
Q ss_pred cceeceeeEEeCCC-EEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 52 PILRDCSFSVPSGQ-LWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge-~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.++..+++.++++. +++|.||||+|||||++.++..+.+
T Consensus 30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 47888888888766 8999999999999999999998765
Done!