Query 024738
Match_columns 263
No_of_seqs 276 out of 1226
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 3.7E-60 1.3E-64 421.3 28.0 213 32-249 6-234 (275)
2 3tui_C Methionine import ATP-b 100.0 1.4E-59 4.7E-64 431.2 28.2 216 31-249 22-254 (366)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 2.5E-59 8.7E-64 429.0 27.5 210 33-249 4-229 (359)
4 3tif_A Uncharacterized ABC tra 100.0 3.4E-59 1.1E-63 406.4 26.0 212 33-247 1-233 (235)
5 3rlf_A Maltose/maltodextrin im 100.0 8.1E-59 2.8E-63 428.4 27.1 210 33-249 3-224 (381)
6 2olj_A Amino acid ABC transpor 100.0 5.1E-58 1.7E-62 405.2 28.0 210 32-249 23-249 (263)
7 2pcj_A ABC transporter, lipopr 100.0 3.3E-58 1.1E-62 397.4 26.1 203 32-242 3-222 (224)
8 1b0u_A Histidine permease; ABC 100.0 4.8E-58 1.6E-62 405.2 27.4 210 32-249 5-243 (262)
9 1g6h_A High-affinity branched- 100.0 9E-58 3.1E-62 402.3 27.6 206 32-245 6-239 (257)
10 4g1u_C Hemin import ATP-bindin 100.0 5.9E-58 2E-62 405.5 26.4 209 32-249 10-238 (266)
11 1z47_A CYSA, putative ABC-tran 100.0 9.3E-58 3.2E-62 418.5 26.6 212 31-249 12-236 (355)
12 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-57 4.9E-62 400.9 26.7 210 32-249 14-236 (256)
13 2yyz_A Sugar ABC transporter, 100.0 1.6E-57 5.5E-62 417.6 26.3 210 33-249 3-224 (359)
14 1ji0_A ABC transporter; ATP bi 100.0 3.4E-57 1.2E-61 394.8 26.5 210 31-249 4-229 (240)
15 2it1_A 362AA long hypothetical 100.0 2.1E-57 7.3E-62 417.3 25.7 210 33-249 3-224 (362)
16 1oxx_K GLCV, glucose, ABC tran 100.0 2.5E-57 8.4E-62 416.0 25.7 210 33-249 3-231 (353)
17 1v43_A Sugar-binding transport 100.0 4.1E-57 1.4E-61 416.7 26.6 210 33-249 11-232 (372)
18 1g29_1 MALK, maltose transport 100.0 5.5E-57 1.9E-61 416.2 27.2 210 33-249 3-230 (372)
19 2nq2_C Hypothetical ABC transp 100.0 3E-56 1E-60 391.8 27.6 209 32-248 3-217 (253)
20 2yz2_A Putative ABC transporte 100.0 1.8E-56 6.1E-61 395.9 25.7 214 33-249 2-228 (266)
21 2onk_A Molybdate/tungstate ABC 100.0 9.1E-57 3.1E-61 392.3 23.1 205 33-249 1-217 (240)
22 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-56 4.1E-61 410.5 23.6 206 33-249 1-218 (348)
23 2ihy_A ABC transporter, ATP-bi 100.0 3.5E-56 1.2E-60 396.5 23.7 212 31-249 19-253 (279)
24 2ixe_A Antigen peptide transpo 100.0 7.2E-55 2.5E-59 386.6 25.1 212 32-249 15-246 (271)
25 3nh6_A ATP-binding cassette SU 100.0 6.4E-55 2.2E-59 392.8 23.9 206 33-249 53-278 (306)
26 2zu0_C Probable ATP-dependent 100.0 2.4E-54 8.1E-59 382.5 26.9 211 30-248 17-254 (267)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-54 6.3E-59 379.7 24.9 204 33-244 3-229 (250)
28 2ff7_A Alpha-hemolysin translo 100.0 4.6E-54 1.6E-58 376.7 27.1 202 33-249 7-233 (247)
29 2pze_A Cystic fibrosis transme 100.0 3.9E-54 1.3E-58 373.1 24.7 203 32-249 5-219 (229)
30 2cbz_A Multidrug resistance-as 100.0 3.8E-54 1.3E-58 375.0 24.1 208 33-249 3-218 (237)
31 2qi9_C Vitamin B12 import ATP- 100.0 9.7E-54 3.3E-58 375.1 25.3 199 32-248 3-222 (249)
32 1mv5_A LMRA, multidrug resista 100.0 4.9E-54 1.7E-58 375.5 19.9 203 33-249 1-227 (243)
33 2pjz_A Hypothetical protein ST 100.0 1.6E-53 5.4E-58 376.5 21.6 202 33-249 1-216 (263)
34 2ghi_A Transport protein; mult 100.0 2.6E-52 8.9E-57 368.1 27.2 204 32-249 16-243 (260)
35 1sgw_A Putative ABC transporte 100.0 3.2E-53 1.1E-57 363.9 15.7 193 32-237 9-210 (214)
36 3gd7_A Fusion complex of cysti 100.0 7.2E-52 2.5E-56 383.9 21.5 202 32-249 18-243 (390)
37 4a82_A Cystic fibrosis transme 100.0 1.3E-50 4.5E-55 393.2 27.0 203 33-249 339-565 (578)
38 3qf4_A ABC transporter, ATP-bi 100.0 7.9E-51 2.7E-55 395.4 24.1 207 33-249 341-567 (587)
39 2bbs_A Cystic fibrosis transme 100.0 7.1E-51 2.4E-55 364.1 20.3 197 32-248 39-247 (290)
40 3b5x_A Lipid A export ATP-bind 100.0 5.7E-50 1.9E-54 389.0 26.5 205 32-249 340-568 (582)
41 3b60_A Lipid A export ATP-bind 100.0 5.2E-50 1.8E-54 389.3 26.1 205 32-249 340-568 (582)
42 3qf4_B Uncharacterized ABC tra 100.0 2.8E-50 9.5E-55 392.4 22.5 202 33-249 354-579 (598)
43 2yl4_A ATP-binding cassette SU 100.0 5.3E-50 1.8E-54 390.2 24.0 204 34-248 342-570 (595)
44 4f4c_A Multidrug resistance pr 100.0 2.2E-48 7.5E-53 406.8 23.0 206 33-249 1076-1305(1321)
45 4f4c_A Multidrug resistance pr 100.0 1.5E-46 5.2E-51 393.0 28.6 204 33-249 415-642 (1321)
46 3bk7_A ABC transporter ATP-bin 100.0 5.6E-47 1.9E-51 369.0 19.8 207 31-249 355-564 (607)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 4.4E-47 1.5E-51 365.6 18.4 207 31-249 285-494 (538)
48 3g5u_A MCG1178, multidrug resi 100.0 5.9E-46 2E-50 387.7 25.4 206 33-249 1030-1259(1284)
49 3g5u_A MCG1178, multidrug resi 100.0 1E-45 3.6E-50 385.8 26.8 208 33-249 387-614 (1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 7.5E-46 2.5E-50 356.7 21.1 206 31-247 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 9.8E-45 3.3E-49 353.0 17.9 203 37-249 350-560 (608)
52 2iw3_A Elongation factor 3A; a 100.0 2.7E-43 9.2E-48 355.5 16.0 204 31-242 669-981 (986)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-43 9.1E-48 339.2 14.0 186 34-235 21-234 (538)
54 3bk7_A ABC transporter ATP-bin 100.0 3.8E-43 1.3E-47 342.0 14.3 187 33-235 83-304 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-42 5.8E-47 341.4 15.2 204 52-257 32-307 (670)
56 2iw3_A Elongation factor 3A; a 100.0 2.8E-41 9.5E-46 340.9 22.5 195 33-248 435-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 8.7E-40 3E-44 322.1 18.7 135 116-258 506-650 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 8E-40 2.7E-44 318.4 17.1 186 38-237 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.8E-39 9.6E-44 311.0 13.7 182 37-236 3-214 (538)
60 3pih_A Uvrabc system protein A 100.0 2.8E-36 9.7E-41 303.7 24.0 121 137-259 783-913 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 8.3E-37 2.8E-41 305.4 18.2 122 137-260 708-839 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 1.9E-36 6.6E-41 304.0 18.1 119 138-258 824-952 (972)
63 2ygr_A Uvrabc system protein A 100.0 4.9E-36 1.7E-40 301.9 19.1 119 138-258 842-970 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.5E-40 1.2E-44 311.8 -14.9 194 31-248 116-338 (460)
65 4aby_A DNA repair protein RECN 100.0 5.8E-34 2E-38 264.7 18.8 80 159-241 296-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 2E-32 6.9E-37 251.9 16.1 85 153-239 274-364 (365)
67 4gp7_A Metallophosphoesterase; 100.0 2.8E-33 9.7E-38 231.1 1.4 150 56-229 1-168 (171)
68 3b85_A Phosphate starvation-in 100.0 5.6E-35 1.9E-39 249.4 -13.5 147 51-236 13-171 (208)
69 1e69_A Chromosome segregation 100.0 2.2E-29 7.6E-34 227.6 15.4 92 151-245 212-310 (322)
70 2v9p_A Replication protein E1; 100.0 4.8E-34 1.7E-38 256.4 -18.5 163 33-246 101-264 (305)
71 1tq4_A IIGP1, interferon-induc 100.0 4.5E-32 1.5E-36 252.8 -9.8 171 52-235 37-254 (413)
72 1znw_A Guanylate kinase, GMP k 99.9 4.3E-32 1.5E-36 230.2 -13.7 168 51-233 9-202 (207)
73 1ye8_A Protein THEP1, hypothet 99.9 1.9E-28 6.4E-33 204.1 4.6 139 66-239 2-159 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 3.9E-29 1.3E-33 235.0 -3.4 187 32-248 130-344 (438)
75 2vf7_A UVRA2, excinuclease ABC 99.9 4.5E-26 1.5E-30 228.0 18.0 106 142-249 362-476 (842)
76 3b9q_A Chloroplast SRP recepto 99.9 1.6E-28 5.4E-33 220.6 -2.2 163 54-237 90-284 (302)
77 3qkt_A DNA double-strand break 99.9 7.1E-25 2.4E-29 199.4 18.9 80 152-233 242-327 (339)
78 3aez_A Pantothenate kinase; tr 99.9 2.3E-29 7.9E-34 227.0 -12.0 180 32-236 42-246 (312)
79 2obl_A ESCN; ATPase, hydrolase 99.9 1.8E-27 6.1E-32 217.5 -1.8 197 32-246 44-253 (347)
80 1tf7_A KAIC; homohexamer, hexa 99.9 3.2E-26 1.1E-30 219.6 6.8 171 33-236 257-444 (525)
81 1z6g_A Guanylate kinase; struc 99.9 5.9E-30 2E-34 219.3 -17.9 143 52-206 11-175 (218)
82 2o5v_A DNA replication and rep 99.9 5.1E-25 1.8E-29 202.0 13.5 86 153-246 259-354 (359)
83 2og2_A Putative signal recogni 99.9 4.3E-27 1.5E-31 215.7 -0.8 162 55-237 148-341 (359)
84 2o8b_B DNA mismatch repair pro 99.9 4.8E-26 1.6E-30 232.4 6.1 167 32-238 749-930 (1022)
85 2pt7_A CAG-ALFA; ATPase, prote 99.9 8.5E-27 2.9E-31 211.7 0.1 132 53-236 160-291 (330)
86 3pih_A Uvrabc system protein A 99.9 3.1E-25 1.1E-29 223.6 9.4 160 80-249 384-561 (916)
87 4ad8_A DNA repair protein RECN 99.9 7.6E-25 2.6E-29 209.7 11.4 79 154-235 392-473 (517)
88 1tf7_A KAIC; homohexamer, hexa 99.9 7.9E-28 2.7E-32 230.8 -10.9 168 33-234 12-209 (525)
89 3thx_A DNA mismatch repair pro 99.9 8.6E-26 2.9E-30 228.3 3.3 170 33-246 631-811 (934)
90 1cr0_A DNA primase/helicase; R 99.9 1.6E-24 5.5E-29 192.7 10.8 173 52-237 23-237 (296)
91 2r6f_A Excinuclease ABC subuni 99.9 6.8E-24 2.3E-28 213.3 13.6 130 116-249 453-601 (972)
92 2ygr_A Uvrabc system protein A 99.9 1.1E-23 3.8E-28 212.4 14.6 130 116-249 470-618 (993)
93 3sop_A Neuronal-specific septi 99.9 1.7E-26 5.8E-31 204.2 -6.0 140 66-223 4-153 (270)
94 3thx_B DNA mismatch repair pro 99.9 1.1E-24 3.9E-29 219.7 1.9 161 33-228 640-804 (918)
95 1w1w_A Structural maintenance 99.9 2.6E-22 8.9E-27 187.8 16.0 76 156-233 331-410 (430)
96 2jeo_A Uridine-cytidine kinase 99.9 1E-24 3.5E-29 189.4 -1.0 170 51-249 12-188 (245)
97 2ehv_A Hypothetical protein PH 99.9 2.3E-24 7.7E-29 185.6 0.3 168 33-233 6-206 (251)
98 2eyu_A Twitching motility prot 99.9 3.5E-24 1.2E-28 188.5 1.3 139 34-233 6-146 (261)
99 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.5E-22 5.2E-27 163.6 10.6 83 152-236 51-141 (148)
100 1ewq_A DNA mismatch repair pro 99.9 4.6E-23 1.6E-27 205.0 3.6 146 33-226 550-704 (765)
101 3asz_A Uridine kinase; cytidin 99.9 3.9E-25 1.3E-29 186.9 -11.4 147 61-220 3-161 (211)
102 2w0m_A SSO2452; RECA, SSPF, un 99.9 7.5E-22 2.6E-26 167.5 8.2 169 51-235 9-192 (235)
103 4a74_A DNA repair and recombin 99.8 1.4E-21 4.7E-26 166.1 8.0 156 60-236 21-201 (231)
104 2qnr_A Septin-2, protein NEDD5 99.8 5.9E-24 2E-28 190.6 -8.4 155 37-221 2-168 (301)
105 1pui_A ENGB, probable GTP-bind 99.8 7.5E-22 2.6E-26 165.6 4.3 165 33-206 3-198 (210)
106 3szr_A Interferon-induced GTP- 99.8 7.6E-24 2.6E-28 206.4 -10.0 179 33-245 10-234 (608)
107 1wb9_A DNA mismatch repair pro 99.8 9.8E-22 3.3E-26 196.4 3.9 155 51-241 595-751 (800)
108 1nlf_A Regulatory protein REPA 99.8 9.1E-21 3.1E-25 167.3 9.2 147 60-223 26-184 (279)
109 2i3b_A HCR-ntpase, human cance 99.8 4.8E-23 1.6E-27 173.0 -7.5 148 64-241 1-169 (189)
110 1rj9_A FTSY, signal recognitio 99.8 3.4E-22 1.2E-26 179.4 -3.1 153 63-236 101-284 (304)
111 1pzn_A RAD51, DNA repair and r 99.8 1.8E-21 6E-26 177.9 0.4 163 52-241 118-308 (349)
112 3jvv_A Twitching mobility prot 99.8 8.1E-21 2.8E-25 173.9 3.4 137 37-234 92-245 (356)
113 3kta_B Chromosome segregation 99.8 1E-18 3.5E-23 144.6 11.0 83 152-237 58-146 (173)
114 2qag_C Septin-7; cell cycle, c 99.8 7.4E-21 2.5E-25 177.5 -2.5 157 32-222 10-179 (418)
115 2cvh_A DNA repair and recombin 99.8 1.9E-19 6.6E-24 151.9 5.2 153 52-235 7-185 (220)
116 1s96_A Guanylate kinase, GMP k 99.7 9.2E-20 3.2E-24 156.3 -1.6 137 58-249 10-161 (219)
117 1lw7_A Transcriptional regulat 99.7 1.5E-21 5.1E-26 179.0 -16.1 179 53-246 157-353 (365)
118 2bbw_A Adenylate kinase 4, AK4 99.7 3.2E-20 1.1E-24 160.8 -8.9 134 63-206 26-198 (246)
119 1zp6_A Hypothetical protein AT 99.7 2.5E-20 8.6E-25 154.5 -10.3 127 60-204 5-147 (191)
120 2ewv_A Twitching motility prot 99.7 2.4E-18 8.3E-23 158.4 1.5 126 53-229 127-253 (372)
121 2qag_B Septin-6, protein NEDD5 99.7 1.8E-18 6E-23 161.4 0.1 174 33-220 16-219 (427)
122 2gza_A Type IV secretion syste 99.7 1E-18 3.5E-23 160.2 -2.1 155 35-236 137-303 (361)
123 2bdt_A BH3686; alpha-beta prot 99.7 5.8E-20 2E-24 152.6 -10.8 164 64-246 2-182 (189)
124 1n0w_A DNA repair protein RAD5 99.7 3.6E-16 1.2E-20 133.6 12.6 148 60-235 20-209 (243)
125 2qm8_A GTPase/ATPase; G protei 99.7 3E-20 1E-24 169.0 -14.8 164 33-206 29-260 (337)
126 2rcn_A Probable GTPase ENGC; Y 99.7 8.4E-17 2.9E-21 147.1 7.6 113 53-173 205-328 (358)
127 3auy_A DNA double-strand break 99.7 4.5E-16 1.5E-20 142.9 12.4 77 154-233 276-359 (371)
128 3ec2_A DNA replication protein 99.6 4.6E-16 1.6E-20 128.0 8.3 112 58-221 32-144 (180)
129 1udx_A The GTP-binding protein 99.6 3.5E-17 1.2E-21 152.6 0.9 146 54-218 147-306 (416)
130 1htw_A HI0065; nucleotide-bind 99.6 2.5E-18 8.6E-23 140.2 -6.7 81 34-122 8-96 (158)
131 1p9r_A General secretion pathw 99.6 8.3E-19 2.9E-23 163.7 -14.4 137 34-182 144-315 (418)
132 3e70_C DPA, signal recognition 99.6 9E-17 3.1E-21 145.5 -0.8 154 60-238 125-307 (328)
133 1nij_A Hypothetical protein YJ 99.6 3.4E-19 1.2E-23 160.6 -16.7 142 65-223 5-192 (318)
134 2yhs_A FTSY, cell division pro 99.6 4.4E-17 1.5E-21 154.2 -3.7 144 54-218 283-447 (503)
135 1odf_A YGR205W, hypothetical 3 99.6 5.1E-17 1.7E-21 144.8 -3.6 124 62-192 29-168 (290)
136 1sxj_E Activator 1 40 kDa subu 99.6 6E-15 2E-19 133.3 8.9 136 66-232 38-188 (354)
137 3lda_A DNA repair protein RAD5 99.5 1.2E-14 4.2E-19 134.8 10.3 148 60-236 174-364 (400)
138 2yv5_A YJEQ protein; hydrolase 99.5 1.4E-16 4.7E-21 142.6 -3.1 110 60-171 161-300 (302)
139 2kjq_A DNAA-related protein; s 99.5 9.7E-15 3.3E-19 117.6 7.1 95 52-219 29-124 (149)
140 2oap_1 GSPE-2, type II secreti 99.5 9.3E-18 3.2E-22 160.3 -12.9 161 52-227 248-458 (511)
141 1lvg_A Guanylate kinase, GMP k 99.5 2.8E-18 9.4E-23 144.4 -16.9 146 62-234 2-173 (198)
142 1in4_A RUVB, holliday junction 99.5 3.5E-17 1.2E-21 148.1 -13.2 161 33-224 18-206 (334)
143 2f1r_A Molybdopterin-guanine d 99.5 2E-16 7E-21 130.5 -7.5 136 65-207 3-162 (171)
144 3c8u_A Fructokinase; YP_612366 99.5 2.2E-16 7.4E-21 133.4 -8.9 157 61-249 19-182 (208)
145 1sq5_A Pantothenate kinase; P- 99.4 1.7E-16 5.8E-21 142.3 -10.5 59 32-97 36-115 (308)
146 3lnc_A Guanylate kinase, GMP k 99.4 5.4E-18 1.8E-22 145.3 -21.2 169 52-230 15-206 (231)
147 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 9.7E-17 3.3E-21 148.5 -15.0 155 60-243 16-208 (392)
148 1vma_A Cell division protein F 99.4 1.6E-13 5.3E-18 123.1 6.2 99 56-187 96-197 (306)
149 2x8a_A Nuclear valosin-contain 99.4 4.2E-17 1.4E-21 144.1 -17.1 132 52-201 34-190 (274)
150 1u0l_A Probable GTPase ENGC; p 99.4 6.7E-15 2.3E-19 131.5 -4.0 99 59-161 164-294 (301)
151 2px0_A Flagellar biosynthesis 99.4 1E-12 3.4E-17 117.3 8.5 142 62-240 103-247 (296)
152 1t9h_A YLOQ, probable GTPase E 99.4 1.8E-14 6.1E-19 129.3 -2.8 107 59-166 168-303 (307)
153 3euj_A Chromosome partition pr 99.3 3.4E-13 1.1E-17 127.6 4.3 47 52-99 18-64 (483)
154 1ls1_A Signal recognition part 99.3 5.3E-12 1.8E-16 112.5 10.9 132 34-204 77-209 (295)
155 2r6a_A DNAB helicase, replicat 99.3 1.2E-12 4.1E-17 123.1 6.9 174 51-237 190-401 (454)
156 2dr3_A UPF0273 protein PH0284; 99.3 4.5E-12 1.5E-16 108.1 8.9 165 52-234 10-196 (247)
157 2ius_A DNA translocase FTSK; n 99.3 1.7E-14 5.9E-19 137.3 -8.4 165 55-221 158-343 (512)
158 1oix_A RAS-related protein RAB 99.2 5.3E-12 1.8E-16 104.5 4.0 135 66-204 31-189 (191)
159 3tr0_A Guanylate kinase, GMP k 99.2 7.5E-13 2.6E-17 110.3 -1.6 48 58-109 1-61 (205)
160 2zr9_A Protein RECA, recombina 99.1 8.9E-11 3E-15 107.0 8.4 143 60-242 57-237 (349)
161 1iy2_A ATP-dependent metallopr 99.1 6.9E-14 2.3E-18 122.9 -11.9 130 33-186 49-195 (278)
162 1ixz_A ATP-dependent metallopr 99.1 5.8E-14 2E-18 121.5 -12.9 132 32-187 24-172 (254)
163 3k1j_A LON protease, ATP-depen 99.1 1.2E-11 4.2E-16 120.2 -0.3 161 34-203 35-227 (604)
164 1qhl_A Protein (cell division 99.0 4.5E-12 1.5E-16 109.0 -5.1 54 33-99 9-62 (227)
165 2f9l_A RAB11B, member RAS onco 99.0 1.6E-10 5.6E-15 95.7 4.4 37 167-205 130-166 (199)
166 2qtf_A Protein HFLX, GTP-bindi 99.0 2.9E-10 9.8E-15 104.2 5.7 140 63-206 177-353 (364)
167 3nwj_A ATSK2; P loop, shikimat 99.0 4.8E-11 1.6E-15 103.9 -0.7 53 32-88 16-72 (250)
168 2ce7_A Cell division protein F 99.0 1.2E-09 4.2E-14 103.2 8.5 117 52-223 39-167 (476)
169 1svm_A Large T antigen; AAA+ f 98.9 1.7E-12 5.9E-17 119.4 -11.2 127 52-187 157-312 (377)
170 3kta_A Chromosome segregation 98.9 1.3E-09 4.5E-14 89.1 4.8 112 53-168 14-152 (182)
171 2xau_A PRE-mRNA-splicing facto 98.9 2.1E-09 7.2E-14 107.3 6.8 147 60-227 105-260 (773)
172 3a00_A Guanylate kinase, GMP k 98.8 5.4E-10 1.8E-14 92.2 1.4 26 64-89 1-26 (186)
173 4a1f_A DNAB helicase, replicat 98.8 3.1E-09 1.1E-13 96.3 6.5 130 52-217 34-163 (338)
174 1jjv_A Dephospho-COA kinase; P 98.8 2.9E-09 9.9E-14 88.8 5.5 126 66-234 4-132 (206)
175 2e87_A Hypothetical protein PH 98.8 3.2E-09 1.1E-13 96.6 5.8 122 63-221 166-293 (357)
176 3uie_A Adenylyl-sulfate kinase 98.8 4.4E-10 1.5E-14 93.7 -1.5 56 37-98 3-60 (200)
177 2j41_A Guanylate kinase; GMP, 98.8 4E-09 1.4E-13 87.5 4.1 35 59-93 1-35 (207)
178 1fnn_A CDC6P, cell division co 98.7 5.3E-08 1.8E-12 88.0 11.1 127 63-222 41-171 (389)
179 3hr8_A Protein RECA; alpha and 98.7 3.1E-08 1.1E-12 90.3 9.3 43 53-95 48-92 (356)
180 3t34_A Dynamin-related protein 98.7 4.3E-09 1.5E-13 95.8 3.2 162 52-218 25-212 (360)
181 2dhr_A FTSH; AAA+ protein, hex 98.7 3.2E-10 1.1E-14 107.9 -5.8 133 32-188 39-188 (499)
182 1kgd_A CASK, peripheral plasma 98.6 1E-08 3.5E-13 84.1 2.3 35 62-96 3-38 (180)
183 4eun_A Thermoresistant glucoki 98.6 1.4E-08 4.7E-13 84.6 2.9 40 56-99 21-60 (200)
184 3vaa_A Shikimate kinase, SK; s 98.6 2E-08 7E-13 83.5 3.4 38 51-88 12-49 (199)
185 4e22_A Cytidylate kinase; P-lo 98.5 1.1E-08 3.8E-13 88.6 0.8 35 62-96 25-62 (252)
186 2qby_A CDC6 homolog 1, cell di 98.5 1.5E-08 5.3E-13 91.1 0.6 30 62-91 43-72 (386)
187 3m6a_A ATP-dependent protease 98.5 1.6E-08 5.4E-13 97.2 0.4 57 35-97 85-141 (543)
188 2vp4_A Deoxynucleoside kinase; 98.5 2.5E-08 8.5E-13 85.0 1.3 40 56-99 12-51 (230)
189 3tqc_A Pantothenate kinase; bi 98.5 1.5E-08 5.3E-13 91.1 -0.3 129 52-191 74-211 (321)
190 3tau_A Guanylate kinase, GMP k 98.4 8.5E-08 2.9E-12 80.4 3.6 29 62-90 6-34 (208)
191 1rz3_A Hypothetical protein rb 98.4 3.7E-08 1.3E-12 82.1 1.2 39 60-98 18-56 (201)
192 3bh0_A DNAB-like replicative h 98.4 2.2E-07 7.4E-12 83.1 6.2 133 51-218 55-189 (315)
193 1zu4_A FTSY; GTPase, signal re 98.4 3.3E-08 1.1E-12 88.9 0.8 44 54-97 95-138 (320)
194 3kl4_A SRP54, signal recogniti 98.4 8.8E-07 3E-11 82.7 10.4 35 63-97 96-130 (433)
195 3ney_A 55 kDa erythrocyte memb 98.4 1.2E-07 4.1E-12 79.5 2.7 31 59-89 14-44 (197)
196 1ega_A Protein (GTP-binding pr 98.3 2.6E-08 9.1E-13 88.6 -2.0 138 64-223 8-162 (301)
197 3lxx_A GTPase IMAP family memb 98.3 5.5E-06 1.9E-10 70.4 12.5 29 66-94 31-59 (239)
198 3cr8_A Sulfate adenylyltranfer 98.3 8.6E-08 2.9E-12 92.2 0.9 40 60-99 365-406 (552)
199 1knq_A Gluconate kinase; ALFA/ 98.3 1.5E-07 5.2E-12 76.1 2.2 34 62-99 6-39 (175)
200 2dy1_A Elongation factor G; tr 98.3 5.5E-08 1.9E-12 95.5 -0.7 38 58-95 3-42 (665)
201 3b9p_A CG5977-PA, isoform A; A 98.3 4.5E-06 1.5E-10 73.0 11.6 119 62-233 52-187 (297)
202 2z4s_A Chromosomal replication 98.3 6.3E-07 2.2E-11 83.8 6.5 44 175-220 193-237 (440)
203 1v5w_A DMC1, meiotic recombina 98.3 4E-06 1.4E-10 75.8 10.9 153 60-235 118-309 (343)
204 2ffh_A Protein (FFH); SRP54, s 98.3 1.2E-06 4.2E-11 81.6 7.0 53 36-97 79-131 (425)
205 2qt1_A Nicotinamide riboside k 98.3 4.9E-07 1.7E-11 75.2 3.9 42 57-108 14-55 (207)
206 1kag_A SKI, shikimate kinase I 98.2 3.6E-07 1.2E-11 73.5 2.5 28 63-90 3-30 (173)
207 2p67_A LAO/AO transport system 98.2 1.1E-07 3.9E-12 85.9 -0.7 60 33-97 30-89 (341)
208 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 8E-07 2.7E-11 70.9 3.8 32 54-86 14-45 (149)
209 2z43_A DNA repair and recombin 98.2 8E-06 2.7E-10 73.1 10.4 152 60-234 103-289 (324)
210 1ypw_A Transitional endoplasmi 98.2 1.9E-06 6.7E-11 86.3 6.5 31 59-89 233-263 (806)
211 3ice_A Transcription terminati 98.1 3.7E-07 1.3E-11 83.9 0.3 52 33-88 133-198 (422)
212 2q6t_A DNAB replication FORK h 98.1 1.8E-05 6E-10 73.9 11.8 170 52-234 188-397 (444)
213 4eaq_A DTMP kinase, thymidylat 98.1 1E-06 3.5E-11 75.3 2.7 43 53-96 12-57 (229)
214 1cke_A CK, MSSA, protein (cyti 98.1 3.4E-07 1.2E-11 76.9 -0.4 34 64-97 5-41 (227)
215 3cf0_A Transitional endoplasmi 98.0 4.1E-06 1.4E-10 74.0 5.6 30 59-88 44-73 (301)
216 2www_A Methylmalonic aciduria 98.0 1.1E-06 3.8E-11 79.7 1.7 36 62-97 72-107 (349)
217 2pez_A Bifunctional 3'-phospho 98.0 1.2E-06 4.2E-11 71.1 1.8 36 62-98 3-40 (179)
218 3llm_A ATP-dependent RNA helic 98.0 1.1E-06 3.9E-11 74.7 0.9 126 60-204 72-205 (235)
219 1l8q_A Chromosomal replication 98.0 1.8E-05 6E-10 70.3 8.4 29 63-91 36-64 (324)
220 3h4m_A Proteasome-activating n 98.0 2.6E-05 8.7E-10 67.7 9.1 28 61-88 48-75 (285)
221 3qks_A DNA double-strand break 98.0 4.5E-06 1.6E-10 69.8 3.8 31 54-85 14-44 (203)
222 1m7g_A Adenylylsulfate kinase; 97.9 2.1E-06 7E-11 71.8 0.4 40 59-98 20-61 (211)
223 2w58_A DNAI, primosome compone 97.9 3.4E-06 1.2E-10 69.6 1.8 27 65-91 55-81 (202)
224 3auy_A DNA double-strand break 97.8 2.1E-05 7E-10 71.7 6.0 32 53-85 15-46 (371)
225 2yvu_A Probable adenylyl-sulfa 97.8 4E-06 1.4E-10 68.4 1.2 37 60-96 9-45 (186)
226 1u94_A RECA protein, recombina 97.8 0.00024 8.1E-09 64.6 12.8 148 52-240 49-237 (356)
227 2qag_A Septin-2, protein NEDD5 97.8 1.7E-06 5.7E-11 78.9 -1.6 50 33-93 17-66 (361)
228 1y63_A LMAJ004144AAA protein; 97.8 1E-05 3.4E-10 66.2 3.3 32 56-87 2-33 (184)
229 1f6b_A SAR1; gtpases, N-termin 97.8 6.3E-06 2.2E-10 67.9 1.9 47 52-99 14-68 (198)
230 1j8m_F SRP54, signal recogniti 97.8 2.8E-06 9.5E-11 75.5 -0.4 55 35-97 76-131 (297)
231 3bos_A Putative DNA replicatio 97.8 2.2E-05 7.4E-10 65.6 4.9 27 63-89 51-77 (242)
232 2if2_A Dephospho-COA kinase; a 97.7 1.1E-05 3.7E-10 66.7 2.7 22 66-87 3-24 (204)
233 1m2o_B GTP-binding protein SAR 97.7 3.4E-05 1.2E-09 62.9 5.4 34 52-86 12-45 (190)
234 2qor_A Guanylate kinase; phosp 97.7 1.4E-05 4.9E-10 66.3 3.0 30 60-89 8-37 (204)
235 1mky_A Probable GTP-binding pr 97.7 5.2E-05 1.8E-09 70.6 6.4 35 66-100 182-228 (439)
236 2wji_A Ferrous iron transport 97.7 9.6E-05 3.3E-09 58.6 7.2 24 66-89 5-28 (165)
237 2gj8_A MNME, tRNA modification 97.6 2.2E-05 7.4E-10 63.2 3.0 27 62-88 2-28 (172)
238 1njg_A DNA polymerase III subu 97.6 2.7E-05 9.1E-10 64.5 3.5 45 175-223 125-169 (250)
239 2ohf_A Protein OLA1, GTP-bindi 97.6 2.7E-05 9.4E-10 71.7 3.8 40 60-99 18-68 (396)
240 2wjg_A FEOB, ferrous iron tran 97.6 6.6E-05 2.2E-09 60.4 5.6 22 66-87 9-30 (188)
241 1sxj_C Activator 1 40 kDa subu 97.6 4.4E-06 1.5E-10 74.9 -1.7 42 52-93 32-75 (340)
242 2ga8_A Hypothetical 39.9 kDa p 97.6 7.8E-06 2.7E-10 74.3 -0.1 37 52-88 10-48 (359)
243 2v1u_A Cell division control p 97.6 2.1E-05 7.3E-10 70.5 2.5 28 62-89 42-69 (387)
244 2zej_A Dardarin, leucine-rich 97.6 3.3E-05 1.1E-09 62.6 3.3 26 66-91 4-29 (184)
245 3t61_A Gluconokinase; PSI-biol 97.5 3.4E-05 1.2E-09 63.6 2.8 25 64-88 18-42 (202)
246 1sxj_D Activator 1 41 kDa subu 97.5 2.8E-05 9.7E-10 69.1 2.2 43 176-222 133-175 (353)
247 3cm0_A Adenylate kinase; ATP-b 97.5 4.4E-05 1.5E-09 61.8 2.9 25 62-86 2-26 (186)
248 1q3t_A Cytidylate kinase; nucl 97.5 5.6E-05 1.9E-09 64.1 3.4 27 61-87 13-39 (236)
249 1lv7_A FTSH; alpha/beta domain 97.4 4.2E-05 1.4E-09 65.5 2.3 35 53-89 36-70 (257)
250 3d8b_A Fidgetin-like protein 1 97.4 0.0008 2.7E-08 60.7 10.8 27 62-88 115-141 (357)
251 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0013 4.4E-08 55.8 11.4 27 62-88 37-63 (262)
252 1np6_A Molybdopterin-guanine d 97.4 3.7E-05 1.3E-09 62.9 1.3 27 65-91 7-33 (174)
253 3r20_A Cytidylate kinase; stru 97.4 3E-05 1E-09 66.5 0.6 26 63-88 8-33 (233)
254 4ag6_A VIRB4 ATPase, type IV s 97.4 5.3E-05 1.8E-09 69.2 2.4 58 176-235 262-335 (392)
255 3lxw_A GTPase IMAP family memb 97.4 0.00033 1.1E-08 60.0 7.2 24 66-89 23-46 (247)
256 2p5t_B PEZT; postsegregational 97.4 4.2E-05 1.4E-09 65.8 1.3 43 53-98 22-64 (253)
257 3kb2_A SPBC2 prophage-derived 97.4 9.9E-05 3.4E-09 58.6 3.4 23 66-88 3-25 (173)
258 1qhx_A CPT, protein (chloramph 97.3 0.00013 4.4E-09 58.6 3.8 26 64-89 3-28 (178)
259 1xp8_A RECA protein, recombina 97.3 0.0016 5.5E-08 59.3 11.4 137 60-236 70-244 (366)
260 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0037 1.3E-07 55.5 13.5 27 62-88 43-69 (322)
261 1kht_A Adenylate kinase; phosp 97.3 0.00015 5.2E-09 58.5 3.7 26 63-88 2-27 (192)
262 1q57_A DNA primase/helicase; d 97.3 0.0026 8.9E-08 59.9 12.5 153 53-220 231-404 (503)
263 1vht_A Dephospho-COA kinase; s 97.3 0.00014 4.7E-09 60.7 3.2 24 63-86 3-26 (218)
264 3lw7_A Adenylate kinase relate 97.2 0.00019 6.4E-09 56.7 3.3 19 66-84 3-21 (179)
265 2rhm_A Putative kinase; P-loop 97.2 0.00016 5.3E-09 58.7 2.7 27 62-88 3-29 (193)
266 1gtv_A TMK, thymidylate kinase 97.2 4.5E-05 1.6E-09 63.1 -0.6 30 66-95 2-31 (214)
267 2jaq_A Deoxyguanosine kinase; 97.2 0.00022 7.4E-09 58.2 3.4 23 66-88 2-24 (205)
268 3k53_A Ferrous iron transport 97.2 0.00043 1.5E-08 59.9 5.4 150 66-229 5-188 (271)
269 2ze6_A Isopentenyl transferase 97.2 0.00018 6.3E-09 61.9 3.0 23 66-88 3-25 (253)
270 3iij_A Coilin-interacting nucl 97.2 0.00014 4.7E-09 58.7 2.1 26 62-87 9-34 (180)
271 1via_A Shikimate kinase; struc 97.1 0.00019 6.6E-09 57.6 2.8 23 66-88 6-28 (175)
272 3cmw_A Protein RECA, recombina 97.1 0.0033 1.1E-07 67.3 12.7 33 61-93 729-761 (1706)
273 2v54_A DTMP kinase, thymidylat 97.1 0.00029 9.8E-09 57.7 3.8 26 63-88 3-28 (204)
274 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.0012 4E-08 59.3 7.9 28 59-86 118-145 (331)
275 3trf_A Shikimate kinase, SK; a 97.1 0.00029 9.8E-09 56.9 3.6 26 63-88 4-29 (185)
276 3dm5_A SRP54, signal recogniti 97.1 0.006 2.1E-07 56.9 12.9 28 63-90 99-126 (443)
277 1ex7_A Guanylate kinase; subst 97.1 0.00026 8.9E-09 58.5 3.2 22 67-88 4-25 (186)
278 3bgw_A DNAB-like replicative h 97.1 0.00061 2.1E-08 63.6 5.9 35 52-86 185-219 (444)
279 1ly1_A Polynucleotide kinase; 97.1 0.00031 1.1E-08 56.1 3.4 22 65-86 3-24 (181)
280 1jal_A YCHF protein; nucleotid 97.0 0.00045 1.6E-08 62.9 4.6 36 64-99 2-48 (363)
281 1uf9_A TT1252 protein; P-loop, 97.0 0.00029 9.9E-09 57.5 3.0 24 64-87 8-31 (203)
282 2plr_A DTMP kinase, probable t 97.0 0.00034 1.2E-08 57.4 3.4 27 63-89 3-29 (213)
283 2c95_A Adenylate kinase 1; tra 97.0 0.00036 1.2E-08 56.6 3.4 27 62-88 7-33 (196)
284 2wwf_A Thymidilate kinase, put 97.0 0.00037 1.3E-08 57.4 3.4 26 62-87 8-33 (212)
285 4fcw_A Chaperone protein CLPB; 97.0 0.00022 7.5E-09 62.3 2.0 43 53-95 25-78 (311)
286 1gvn_B Zeta; postsegregational 97.0 0.00031 1.1E-08 61.7 2.9 36 61-98 30-65 (287)
287 1tev_A UMP-CMP kinase; ploop, 97.0 0.0004 1.4E-08 56.1 3.3 24 64-87 3-26 (196)
288 1nn5_A Similar to deoxythymidy 97.0 0.00041 1.4E-08 57.1 3.4 27 61-87 6-32 (215)
289 2qp9_X Vacuolar protein sortin 97.0 0.0034 1.1E-07 56.6 9.5 27 62-88 82-108 (355)
290 2bwj_A Adenylate kinase 5; pho 96.9 0.00016 5.5E-09 58.9 0.5 29 60-88 8-36 (199)
291 2vli_A Antibiotic resistance p 96.9 0.00034 1.2E-08 56.2 2.4 26 63-88 4-29 (183)
292 3eie_A Vacuolar protein sortin 96.9 0.0033 1.1E-07 55.7 9.0 27 62-88 49-75 (322)
293 3ake_A Cytidylate kinase; CMP 96.9 0.00044 1.5E-08 56.7 3.0 23 66-88 4-26 (208)
294 1nks_A Adenylate kinase; therm 96.9 0.00046 1.6E-08 55.6 3.0 23 66-88 3-25 (194)
295 2z0h_A DTMP kinase, thymidylat 96.9 0.00053 1.8E-08 55.6 3.3 23 66-88 2-24 (197)
296 1xjc_A MOBB protein homolog; s 96.9 0.00031 1.1E-08 57.2 1.7 26 65-90 5-30 (169)
297 3co5_A Putative two-component 96.9 0.0042 1.4E-07 48.3 8.2 40 176-218 75-114 (143)
298 3ihw_A Centg3; RAS, centaurin, 96.8 0.0013 4.3E-08 53.2 5.2 28 66-93 22-54 (184)
299 3cmw_A Protein RECA, recombina 96.8 0.0094 3.2E-07 63.9 12.7 34 53-87 370-406 (1706)
300 2ged_A SR-beta, signal recogni 96.8 0.00063 2.2E-08 54.8 3.0 24 65-88 49-72 (193)
301 1aky_A Adenylate kinase; ATP:A 96.8 0.00082 2.8E-08 56.0 3.8 26 63-88 3-28 (220)
302 3b1v_A Ferrous iron uptake tra 96.8 0.00071 2.4E-08 59.0 3.5 23 66-88 5-27 (272)
303 3euj_A Chromosome partition pr 96.8 0.0024 8.1E-08 60.3 7.2 73 154-233 375-464 (483)
304 1zd8_A GTP:AMP phosphotransfer 96.8 0.00072 2.5E-08 56.7 3.3 27 62-88 5-31 (227)
305 2nzj_A GTP-binding protein REM 96.7 0.0008 2.7E-08 53.0 3.3 23 66-88 6-28 (175)
306 2cdn_A Adenylate kinase; phosp 96.7 0.00097 3.3E-08 54.7 3.8 27 62-88 18-44 (201)
307 1fzq_A ADP-ribosylation factor 96.7 0.00062 2.1E-08 54.7 2.6 23 65-87 17-39 (181)
308 2erx_A GTP-binding protein DI- 96.7 0.00085 2.9E-08 52.5 3.3 22 66-87 5-26 (172)
309 3iby_A Ferrous iron transport 96.7 0.0025 8.5E-08 54.9 6.5 23 66-88 3-25 (256)
310 3q72_A GTP-binding protein RAD 96.7 0.00066 2.3E-08 53.1 2.6 23 66-88 4-26 (166)
311 2pbr_A DTMP kinase, thymidylat 96.7 0.00087 3E-08 54.1 3.3 23 66-88 2-24 (195)
312 1z2a_A RAS-related protein RAB 96.7 0.00072 2.5E-08 52.8 2.7 22 66-87 7-28 (168)
313 3fb4_A Adenylate kinase; psych 96.7 0.00085 2.9E-08 55.5 3.3 22 66-87 2-23 (216)
314 1zuh_A Shikimate kinase; alpha 96.7 0.00098 3.4E-08 53.0 3.5 23 65-87 8-30 (168)
315 1e6c_A Shikimate kinase; phosp 96.7 0.00076 2.6E-08 53.6 2.8 24 65-88 3-26 (173)
316 3tw8_B RAS-related protein RAB 96.7 0.00084 2.9E-08 53.1 3.0 23 66-88 11-33 (181)
317 4b4t_L 26S protease subunit RP 96.7 0.0083 2.8E-07 55.8 10.2 56 168-223 266-333 (437)
318 3q85_A GTP-binding protein REM 96.7 0.00092 3.2E-08 52.4 3.2 23 66-88 4-26 (169)
319 2pt5_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 52.7 3.4 22 66-87 2-23 (168)
320 2dyk_A GTP-binding protein; GT 96.7 0.00082 2.8E-08 52.1 2.8 23 66-88 3-25 (161)
321 2lkc_A Translation initiation 96.7 0.0012 4.2E-08 52.1 3.9 25 63-87 7-31 (178)
322 1zak_A Adenylate kinase; ATP:A 96.7 0.00077 2.6E-08 56.3 2.7 26 63-88 4-29 (222)
323 3hu3_A Transitional endoplasmi 96.7 0.0031 1.1E-07 59.5 7.2 28 61-88 235-262 (489)
324 1kao_A RAP2A; GTP-binding prot 96.7 0.00087 3E-08 52.0 2.8 22 66-87 5-26 (167)
325 2ce2_X GTPase HRAS; signaling 96.6 0.00075 2.6E-08 52.3 2.4 23 66-88 5-27 (166)
326 1z0j_A RAB-22, RAS-related pro 96.6 0.00088 3E-08 52.4 2.8 23 66-88 8-30 (170)
327 1ukz_A Uridylate kinase; trans 96.6 0.00098 3.3E-08 54.6 3.2 26 63-88 14-39 (203)
328 1u8z_A RAS-related protein RAL 96.6 0.00087 3E-08 52.1 2.7 22 66-87 6-27 (168)
329 3dl0_A Adenylate kinase; phosp 96.6 0.001 3.6E-08 55.1 3.3 22 66-87 2-23 (216)
330 1qf9_A UMP/CMP kinase, protein 96.6 0.00093 3.2E-08 53.8 3.0 24 64-87 6-29 (194)
331 1z08_A RAS-related protein RAB 96.6 0.00092 3.2E-08 52.3 2.8 22 66-87 8-29 (170)
332 2iyv_A Shikimate kinase, SK; t 96.6 0.0009 3.1E-08 53.9 2.8 23 65-87 3-25 (184)
333 1ek0_A Protein (GTP-binding pr 96.6 0.00094 3.2E-08 52.1 2.7 23 66-88 5-27 (170)
334 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0011 3.8E-08 57.0 3.4 25 63-87 3-27 (260)
335 1ky3_A GTP-binding protein YPT 96.6 0.00097 3.3E-08 52.7 2.8 23 66-88 10-32 (182)
336 1svi_A GTP-binding protein YSX 96.6 0.00089 3.1E-08 53.9 2.6 25 64-88 23-47 (195)
337 1c1y_A RAS-related protein RAP 96.6 0.00098 3.4E-08 51.9 2.7 22 66-87 5-26 (167)
338 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.001 3.4E-08 52.6 2.8 22 66-87 9-30 (177)
339 1ko7_A HPR kinase/phosphatase; 96.6 0.0015 5.1E-08 58.3 4.2 34 52-86 133-166 (314)
340 1moz_A ARL1, ADP-ribosylation 96.6 0.00065 2.2E-08 54.1 1.6 24 63-86 17-40 (183)
341 1g16_A RAS-related protein SEC 96.6 0.00089 3.1E-08 52.3 2.4 23 66-88 5-27 (170)
342 3pqc_A Probable GTP-binding pr 96.6 0.0011 3.6E-08 53.2 2.9 23 66-88 25-47 (195)
343 3cmu_A Protein RECA, recombina 96.6 0.015 5E-07 63.3 12.2 137 61-237 380-554 (2050)
344 2grj_A Dephospho-COA kinase; T 96.6 0.0013 4.4E-08 54.4 3.3 23 65-87 13-35 (192)
345 2cxx_A Probable GTP-binding pr 96.6 0.001 3.5E-08 53.2 2.6 23 66-88 3-25 (190)
346 1uj2_A Uridine-cytidine kinase 96.5 0.0013 4.3E-08 56.2 3.3 24 65-88 23-46 (252)
347 2fn4_A P23, RAS-related protei 96.5 0.00099 3.4E-08 52.6 2.4 22 66-87 11-32 (181)
348 1wf3_A GTP-binding protein; GT 96.5 0.0014 4.6E-08 58.0 3.4 22 66-87 9-30 (301)
349 3t1o_A Gliding protein MGLA; G 96.5 0.0013 4.3E-08 52.8 3.0 24 66-89 16-39 (198)
350 1r2q_A RAS-related protein RAB 96.5 0.0012 4.1E-08 51.5 2.7 22 66-87 8-29 (170)
351 2oil_A CATX-8, RAS-related pro 96.5 0.0012 4E-08 53.3 2.8 22 66-87 27-48 (193)
352 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0012 4.1E-08 52.6 2.8 23 66-88 6-28 (189)
353 2hxs_A RAB-26, RAS-related pro 96.5 0.0014 4.8E-08 51.7 3.1 23 66-88 8-30 (178)
354 3clv_A RAB5 protein, putative; 96.5 0.0012 4.2E-08 52.9 2.8 23 66-88 9-31 (208)
355 2xb4_A Adenylate kinase; ATP-b 96.5 0.0015 5.1E-08 54.8 3.4 23 66-88 2-24 (223)
356 3bc1_A RAS-related protein RAB 96.5 0.0012 4.2E-08 52.6 2.7 22 66-87 13-34 (195)
357 1upt_A ARL1, ADP-ribosylation 96.5 0.0013 4.4E-08 51.5 2.7 21 66-86 9-29 (171)
358 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.4E-08 51.3 3.7 27 62-88 41-67 (195)
359 1a7j_A Phosphoribulokinase; tr 96.5 0.0007 2.4E-08 59.6 1.2 26 63-88 4-29 (290)
360 1r8s_A ADP-ribosylation factor 96.5 0.0014 4.7E-08 51.1 2.7 20 67-86 3-22 (164)
361 3tlx_A Adenylate kinase 2; str 96.4 0.0016 5.5E-08 55.5 3.4 26 62-87 27-52 (243)
362 3iev_A GTP-binding protein ERA 96.4 0.0016 5.6E-08 57.5 3.4 24 65-88 11-34 (308)
363 2a9k_A RAS-related protein RAL 96.4 0.0014 4.9E-08 52.0 2.7 22 66-87 20-41 (187)
364 3cbq_A GTP-binding protein REM 96.4 0.0012 4.3E-08 53.8 2.4 22 66-87 25-46 (195)
365 1z0f_A RAB14, member RAS oncog 96.4 0.0015 5E-08 51.5 2.7 23 66-88 17-39 (179)
366 3con_A GTPase NRAS; structural 96.4 0.0014 4.9E-08 52.5 2.7 22 66-87 23-44 (190)
367 2g6b_A RAS-related protein RAB 96.4 0.0015 5E-08 51.7 2.7 23 66-88 12-34 (180)
368 3t5d_A Septin-7; GTP-binding p 96.4 0.0013 4.6E-08 56.9 2.7 22 67-88 11-32 (274)
369 2f6r_A COA synthase, bifunctio 96.4 0.0015 5.2E-08 57.0 3.0 23 64-86 75-97 (281)
370 2y8e_A RAB-protein 6, GH09086P 96.4 0.0013 4.4E-08 51.8 2.4 22 66-87 16-37 (179)
371 2dby_A GTP-binding protein; GD 96.4 0.0014 4.7E-08 59.8 2.7 21 67-87 4-24 (368)
372 4b4t_J 26S protease regulatory 96.4 0.022 7.4E-07 52.5 10.7 64 170-233 235-317 (405)
373 2efe_B Small GTP-binding prote 96.4 0.0017 5.6E-08 51.5 2.8 23 66-88 14-36 (181)
374 1ksh_A ARF-like protein 2; sma 96.4 0.0018 6.3E-08 51.7 3.1 25 64-88 18-42 (186)
375 3u61_B DNA polymerase accessor 96.3 0.012 4.2E-07 51.5 8.6 44 176-223 105-149 (324)
376 2xtp_A GTPase IMAP family memb 96.3 0.0019 6.5E-08 55.1 3.1 23 66-88 24-46 (260)
377 4edh_A DTMP kinase, thymidylat 96.3 0.0021 7.3E-08 53.9 3.4 29 62-90 4-32 (213)
378 1vg8_A RAS-related protein RAB 96.3 0.0018 6E-08 52.7 2.8 23 66-88 10-32 (207)
379 2bov_A RAla, RAS-related prote 96.3 0.0017 6E-08 52.6 2.7 22 66-87 16-37 (206)
380 1nrj_B SR-beta, signal recogni 96.3 0.0019 6.4E-08 53.2 3.0 23 66-88 14-36 (218)
381 2bme_A RAB4A, RAS-related prot 96.3 0.0015 5.3E-08 52.0 2.4 23 66-88 12-34 (186)
382 2gf9_A RAS-related protein RAB 96.3 0.0018 6.1E-08 52.1 2.7 23 66-88 24-46 (189)
383 3tkl_A RAS-related protein RAB 96.3 0.0018 6.1E-08 52.1 2.7 23 66-88 18-40 (196)
384 3v9p_A DTMP kinase, thymidylat 96.3 0.0017 5.9E-08 55.2 2.7 29 61-89 22-50 (227)
385 3be4_A Adenylate kinase; malar 96.3 0.0021 7.2E-08 53.5 3.2 26 63-88 4-29 (217)
386 1sky_E F1-ATPase, F1-ATP synth 96.3 0.002 6.8E-08 60.5 3.3 43 52-95 140-182 (473)
387 2il1_A RAB12; G-protein, GDP, 96.3 0.002 6.8E-08 52.1 2.9 23 66-88 28-50 (192)
388 3kkq_A RAS-related protein M-R 96.3 0.0019 6.4E-08 51.4 2.7 22 66-87 20-41 (183)
389 1zbd_A Rabphilin-3A; G protein 96.3 0.0022 7.5E-08 52.1 3.2 23 66-88 10-32 (203)
390 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0016 5.6E-08 52.1 2.4 22 66-87 9-30 (184)
391 3cnl_A YLQF, putative uncharac 96.3 0.0023 8E-08 55.4 3.5 29 65-93 100-128 (262)
392 3a1s_A Iron(II) transport prot 96.3 0.0024 8.2E-08 55.0 3.5 23 66-88 7-29 (258)
393 1e4v_A Adenylate kinase; trans 96.3 0.0021 7.1E-08 53.3 3.0 23 66-88 2-24 (214)
394 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.002 6.8E-08 51.2 2.7 22 66-87 7-28 (186)
395 2gf0_A GTP-binding protein DI- 96.3 0.0017 5.9E-08 52.3 2.4 22 66-87 10-31 (199)
396 4dhe_A Probable GTP-binding pr 96.3 0.0013 4.3E-08 54.4 1.6 24 65-88 30-53 (223)
397 2cjw_A GTP-binding protein GEM 96.3 0.002 6.7E-08 52.5 2.7 22 66-87 8-29 (192)
398 1ltq_A Polynucleotide kinase; 96.3 0.0023 7.9E-08 55.7 3.4 22 65-86 3-24 (301)
399 2fg5_A RAB-22B, RAS-related pr 96.3 0.0018 6E-08 52.4 2.4 23 66-88 25-47 (192)
400 3i8s_A Ferrous iron transport 96.2 0.0022 7.4E-08 55.7 3.1 23 66-88 5-27 (274)
401 4bas_A ADP-ribosylation factor 96.2 0.0023 7.9E-08 51.5 3.0 22 66-87 19-40 (199)
402 2h57_A ADP-ribosylation factor 96.2 0.0017 5.7E-08 52.3 2.1 23 66-88 23-45 (190)
403 3lv8_A DTMP kinase, thymidylat 96.2 0.0025 8.6E-08 54.5 3.4 27 63-89 26-52 (236)
404 1z06_A RAS-related protein RAB 96.2 0.0022 7.5E-08 51.5 2.8 22 66-87 22-43 (189)
405 2o52_A RAS-related protein RAB 96.2 0.0022 7.5E-08 52.3 2.8 22 66-87 27-48 (200)
406 1ypw_A Transitional endoplasmi 96.2 0.00076 2.6E-08 67.5 0.0 33 57-89 504-536 (806)
407 2p65_A Hypothetical protein PF 96.2 0.0024 8.1E-08 50.6 3.0 28 62-89 41-68 (187)
408 2a5j_A RAS-related protein RAB 96.2 0.0022 7.5E-08 51.7 2.8 23 66-88 23-45 (191)
409 3zvl_A Bifunctional polynucleo 96.2 0.0027 9.1E-08 58.6 3.7 28 60-87 254-281 (416)
410 2qu8_A Putative nucleolar GTP- 96.2 0.0024 8.3E-08 53.2 3.1 22 66-87 31-52 (228)
411 1ak2_A Adenylate kinase isoenz 96.2 0.0031 1.1E-07 53.1 3.8 26 63-88 15-40 (233)
412 2h92_A Cytidylate kinase; ross 96.2 0.0024 8.4E-08 52.8 3.1 25 64-88 3-27 (219)
413 2wsm_A Hydrogenase expression/ 96.2 0.0021 7.2E-08 53.1 2.7 24 65-88 31-54 (221)
414 1zj6_A ADP-ribosylation factor 96.2 0.0023 7.9E-08 51.3 2.8 23 65-87 17-39 (187)
415 4tmk_A Protein (thymidylate ki 96.2 0.0028 9.6E-08 53.3 3.4 27 63-89 2-28 (213)
416 3oes_A GTPase rhebl1; small GT 96.2 0.002 6.7E-08 52.5 2.4 23 66-88 26-48 (201)
417 3reg_A RHO-like small GTPase; 96.2 0.0024 8E-08 51.6 2.7 23 66-88 25-47 (194)
418 3dz8_A RAS-related protein RAB 96.2 0.0021 7E-08 51.9 2.4 23 66-88 25-47 (191)
419 3t5g_A GTP-binding protein RHE 96.2 0.0021 7.1E-08 51.0 2.4 21 66-86 8-28 (181)
420 2f7s_A C25KG, RAS-related prot 96.2 0.0029 9.8E-08 52.0 3.3 23 66-88 27-49 (217)
421 2atv_A RERG, RAS-like estrogen 96.2 0.0025 8.4E-08 51.6 2.8 22 66-87 30-51 (196)
422 3llu_A RAS-related GTP-binding 96.2 0.0027 9.4E-08 51.5 3.1 24 66-89 22-45 (196)
423 1jwy_B Dynamin A GTPase domain 96.2 0.0025 8.7E-08 55.8 3.1 23 66-88 26-48 (315)
424 1zd9_A ADP-ribosylation factor 96.2 0.0024 8.3E-08 51.4 2.7 22 66-87 24-45 (188)
425 2ew1_A RAS-related protein RAB 96.1 0.0021 7.3E-08 52.8 2.4 22 66-87 28-49 (201)
426 2h17_A ADP-ribosylation factor 96.1 0.0022 7.4E-08 51.3 2.4 22 66-87 23-44 (181)
427 1x3s_A RAS-related protein RAB 96.1 0.0025 8.6E-08 51.0 2.7 22 66-87 17-38 (195)
428 2p5s_A RAS and EF-hand domain 96.1 0.0025 8.6E-08 51.8 2.8 23 66-88 30-52 (199)
429 3d3q_A TRNA delta(2)-isopenten 96.1 0.0028 9.7E-08 57.1 3.3 25 65-89 8-32 (340)
430 3cph_A RAS-related protein SEC 96.1 0.0025 8.6E-08 52.0 2.7 23 65-87 21-43 (213)
431 2q3h_A RAS homolog gene family 96.1 0.003 1E-07 51.1 3.2 22 66-87 22-43 (201)
432 2iwr_A Centaurin gamma 1; ANK 96.1 0.002 7E-08 51.0 2.0 22 66-87 9-30 (178)
433 2bcg_Y Protein YP2, GTP-bindin 96.1 0.0023 8E-08 52.1 2.4 23 66-88 10-32 (206)
434 3bwd_D RAC-like GTP-binding pr 96.1 0.0036 1.2E-07 49.5 3.4 23 65-87 9-31 (182)
435 2j1l_A RHO-related GTP-binding 96.1 0.0029 1E-07 52.2 2.9 22 66-87 36-57 (214)
436 2r62_A Cell division protease 96.1 0.00083 2.8E-08 57.5 -0.5 33 54-88 36-68 (268)
437 3tmk_A Thymidylate kinase; pho 96.1 0.0035 1.2E-07 52.8 3.3 29 62-90 3-31 (216)
438 2ocp_A DGK, deoxyguanosine kin 96.0 0.0031 1.1E-07 53.3 3.0 27 63-89 1-27 (241)
439 3exa_A TRNA delta(2)-isopenten 96.0 0.0035 1.2E-07 56.0 3.4 25 64-88 3-27 (322)
440 3c5c_A RAS-like protein 12; GD 96.0 0.0031 1.1E-07 50.8 2.8 22 66-87 23-44 (187)
441 2fv8_A H6, RHO-related GTP-bin 96.0 0.0026 9.1E-08 52.0 2.4 23 66-88 27-49 (207)
442 3a8t_A Adenylate isopentenyltr 96.0 0.0035 1.2E-07 56.4 3.4 26 63-88 39-64 (339)
443 2i1q_A DNA repair and recombin 96.0 0.0035 1.2E-07 55.4 3.3 27 60-86 94-120 (322)
444 3ld9_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 52.9 3.4 28 62-89 19-46 (223)
445 1gwn_A RHO-related GTP-binding 96.0 0.0027 9.1E-08 52.3 2.4 23 66-88 30-52 (205)
446 2fu5_C RAS-related protein RAB 96.0 0.0021 7.1E-08 51.2 1.6 23 66-88 10-32 (183)
447 1qvr_A CLPB protein; coiled co 96.0 0.0035 1.2E-07 63.0 3.6 113 62-218 586-709 (854)
448 3crm_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 55.9 3.4 24 65-88 6-29 (323)
449 2b6h_A ADP-ribosylation factor 96.0 0.0031 1.1E-07 51.1 2.6 24 64-87 29-52 (192)
450 2qmh_A HPR kinase/phosphorylas 96.0 0.0051 1.8E-07 51.4 3.9 36 52-88 23-58 (205)
451 3def_A T7I23.11 protein; chlor 95.9 0.0038 1.3E-07 53.6 3.1 23 66-88 38-60 (262)
452 2g3y_A GTP-binding protein GEM 95.9 0.0042 1.4E-07 51.8 3.3 22 66-87 39-60 (211)
453 2aka_B Dynamin-1; fusion prote 95.9 0.0035 1.2E-07 54.3 2.9 23 66-88 28-50 (299)
454 2gco_A H9, RHO-related GTP-bin 95.9 0.0031 1.1E-07 51.4 2.4 22 66-87 27-48 (201)
455 1h65_A Chloroplast outer envel 95.9 0.0039 1.3E-07 53.7 3.1 23 66-88 41-63 (270)
456 2fh5_B SR-beta, signal recogni 95.9 0.0054 1.9E-07 50.2 3.8 23 66-88 9-31 (214)
457 3cmu_A Protein RECA, recombina 95.9 0.012 4.2E-07 63.9 7.3 35 51-85 1066-1102(2050)
458 4dcu_A GTP-binding protein ENG 95.9 0.0035 1.2E-07 58.4 2.8 21 66-86 25-45 (456)
459 2atx_A Small GTP binding prote 95.9 0.0035 1.2E-07 50.5 2.4 22 66-87 20-41 (194)
460 3umf_A Adenylate kinase; rossm 95.9 0.0036 1.2E-07 52.8 2.5 28 60-87 25-52 (217)
461 1p5z_B DCK, deoxycytidine kina 95.9 0.0027 9.2E-08 54.5 1.8 27 62-88 22-48 (263)
462 4djt_A GTP-binding nuclear pro 95.9 0.0019 6.4E-08 53.2 0.8 23 66-88 13-35 (218)
463 3n70_A Transport activator; si 95.8 0.0053 1.8E-07 47.8 3.3 29 62-90 22-50 (145)
464 2zts_A Putative uncharacterize 95.8 0.0069 2.3E-07 50.6 4.1 61 172-233 131-206 (251)
465 2v3c_C SRP54, signal recogniti 95.8 0.001 3.5E-08 61.9 -1.1 33 59-91 92-126 (432)
466 2hf9_A Probable hydrogenase ni 95.8 0.0042 1.4E-07 51.4 2.6 24 65-88 39-62 (226)
467 2orw_A Thymidine kinase; TMTK, 95.8 0.0057 1.9E-07 50.0 3.4 52 175-233 75-137 (184)
468 3pxi_A Negative regulator of g 95.7 0.017 6E-07 57.0 7.4 113 66-233 523-660 (758)
469 2x77_A ADP-ribosylation factor 95.7 0.0031 1.1E-07 50.6 1.6 22 65-86 23-44 (189)
470 3cpj_B GTP-binding protein YPT 95.7 0.0049 1.7E-07 51.1 2.8 23 66-88 15-37 (223)
471 2yc2_C IFT27, small RAB-relate 95.7 0.002 6.9E-08 52.2 0.4 22 66-87 22-43 (208)
472 2hup_A RAS-related protein RAB 95.7 0.0043 1.5E-07 50.6 2.4 22 66-87 31-52 (201)
473 3q3j_B RHO-related GTP-binding 95.7 0.0053 1.8E-07 50.7 2.7 22 66-87 29-50 (214)
474 3foz_A TRNA delta(2)-isopenten 95.6 0.0064 2.2E-07 54.1 3.4 25 64-88 10-34 (316)
475 4gzl_A RAS-related C3 botulinu 95.6 0.0047 1.6E-07 50.5 2.4 21 66-86 32-52 (204)
476 4hlc_A DTMP kinase, thymidylat 95.6 0.0068 2.3E-07 50.5 3.3 26 64-89 2-27 (205)
477 2chg_A Replication factor C sm 95.6 0.0066 2.3E-07 49.2 3.1 44 175-222 101-144 (226)
478 2j0v_A RAC-like GTP-binding pr 95.5 0.0058 2E-07 49.9 2.4 22 66-87 11-32 (212)
479 3syl_A Protein CBBX; photosynt 95.5 0.008 2.7E-07 52.2 3.4 27 62-88 65-91 (309)
480 2orv_A Thymidine kinase; TP4A 95.4 0.051 1.8E-06 46.2 8.2 51 175-233 89-150 (234)
481 2r8r_A Sensor protein; KDPD, P 95.4 0.0027 9.2E-08 54.1 0.2 46 171-218 79-125 (228)
482 3sr0_A Adenylate kinase; phosp 95.4 0.0091 3.1E-07 49.8 3.3 23 66-88 2-24 (206)
483 3tqf_A HPR(Ser) kinase; transf 95.4 0.012 4.2E-07 48.0 3.9 33 53-86 6-38 (181)
484 3pvs_A Replication-associated 95.3 0.0048 1.7E-07 57.5 1.6 36 55-90 39-76 (447)
485 1puj_A YLQF, conserved hypothe 95.2 0.011 3.9E-07 51.5 3.6 25 65-89 121-145 (282)
486 3eph_A TRNA isopentenyltransfe 95.2 0.0091 3.1E-07 55.0 3.0 24 65-88 3-26 (409)
487 1ofh_A ATP-dependent HSL prote 95.2 0.01 3.6E-07 51.2 3.2 25 64-88 50-74 (310)
488 3p32_A Probable GTPase RV1496/ 95.2 0.0097 3.3E-07 53.5 3.0 27 63-89 78-104 (355)
489 3hws_A ATP-dependent CLP prote 95.2 0.01 3.6E-07 53.2 3.2 26 63-88 50-75 (363)
490 2hjg_A GTP-binding protein ENG 95.2 0.009 3.1E-07 55.2 2.8 22 66-87 5-26 (436)
491 1d2n_A N-ethylmaleimide-sensit 95.2 0.0098 3.3E-07 51.0 2.9 26 62-87 62-87 (272)
492 1wxq_A GTP-binding protein; st 95.2 0.0094 3.2E-07 54.7 2.9 23 66-88 2-24 (397)
493 2qgz_A Helicase loader, putati 95.1 0.013 4.6E-07 51.6 3.7 26 64-89 152-177 (308)
494 3uk6_A RUVB-like 2; hexameric 95.1 0.012 3.9E-07 52.5 3.3 29 62-90 68-96 (368)
495 3th5_A RAS-related C3 botulinu 94.1 0.0036 1.2E-07 50.9 0.0 21 66-86 32-52 (204)
496 2qen_A Walker-type ATPase; unk 95.1 0.014 4.6E-07 51.2 3.7 26 63-88 30-55 (350)
497 2qby_B CDC6 homolog 3, cell di 95.1 0.012 4.2E-07 52.4 3.4 26 63-88 44-69 (384)
498 3t15_A Ribulose bisphosphate c 95.1 0.012 4.1E-07 51.4 3.2 26 63-88 35-60 (293)
499 2bjv_A PSP operon transcriptio 95.1 0.017 5.7E-07 49.2 4.0 30 62-91 27-56 (265)
500 3gj0_A GTP-binding nuclear pro 95.0 0.0067 2.3E-07 50.0 1.4 22 66-87 17-39 (221)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.7e-60 Score=421.31 Aligned_cols=213 Identities=33% Similarity=0.568 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 6 ~~l~i~~ls~~y~~~----~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 81 (275)
T 3gfo_A 6 YILKVEELNYNYSDG----THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81 (275)
T ss_dssp EEEEEEEEEEECTTS----CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHH
T ss_pred cEEEEEEEEEEECCC----CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHH
Confidence 489999999999753 2599999999999999999999999999999999999999999999965
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.+||+||++...++..||.+|+.++....+.+.++..+++.++++.+||.++.++++.+|||||||||+|||||+.+
T Consensus 82 ~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred HhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 38999999753344459999999987666666777778899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..++++|+++.++. |+|||+||||++++ .+||++++|++|+++++|+++++++.
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999986333 68999999999998 57999999999999999999998764
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-59 Score=431.25 Aligned_cols=216 Identities=32% Similarity=0.450 Sum_probs=194.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+|+|+++. +..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 22 ~~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45899999999997531 124699999999999999999999999999999999999999999999964
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.+||+||++..++.+ ||.+|+.++....+...++.++++.++++.+||.++.++++.+|||||||||+|||||+
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~-TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTS-CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 489999998654433 99999999876556667777888999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..++++|+++.++ .|+|||+||||++++ .+||||++|++|++++.|++++++..
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~-~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRR-LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998654 478999999999998 57999999999999999999999865
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.5e-59 Score=428.99 Aligned_cols=210 Identities=32% Similarity=0.499 Sum_probs=191.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 4 ~l~i~~ls~~y~~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~ 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT-----PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78 (359)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred EEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh
Confidence 79999999999763 699999999999999999999999999999999999999999999854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.+||+||++..++.+ ||.+|+.|++...+...++.++++.++++.++|.+++++++.+|||||||||+|||||+.+|
T Consensus 79 ~r~ig~vfQ~~~l~p~l-tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHL-TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp GSCCEEECTTCCCCTTS-CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCCEEEEeCCCcCCCCC-CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 389999998655444 99999999876555566677788999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+..+.++++.|.++.++ .|+|+|+||||++++ .+||||++|++|++++.|++++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999988887654 478999999999997 58999999999999999999999875
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-59 Score=406.40 Aligned_cols=212 Identities=26% Similarity=0.422 Sum_probs=183.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 589999999997431 113599999999999999999999999999999999999999999999965
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++..+..+ ||.+|+.++.... ....++..+++.++++.+++.+. .++++.+|||||||||+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHHEEEECTTCCCCTTS-CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCC-cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 389999998654433 9999998865322 33455666788899999999875 59999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
||+.+|++|||||||+|||+.++..+++.|++++++ .|+|||+||||++.+++||++++|++|++++.++++++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999999999999999999999999998653 368999999999977789999999999999999887753
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.1e-59 Score=428.42 Aligned_cols=210 Identities=26% Similarity=0.453 Sum_probs=193.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++ .+
T Consensus 3 ~l~~~~l~~~yg~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV-----VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77 (381)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE
T ss_pred EEEEEeEEEEECCE-----EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE
Confidence 59999999999763 699999999999999999999999999999999999999999999965 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+||++..++.+ ||.+|+.+++...+.+.++.++++.++++.++|.+++++++.+|||||||||+|||||+.+|++||
T Consensus 78 g~VfQ~~~l~p~l-tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 78 GMVFQSYALYPHL-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp EEECTTCCCCTTS-CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred EEEecCCcCCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998755444 999999998766666777778899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+.++++.|+++.++ .|+|+|+||||++++ .+||||++|++|++++.|++++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 68999999999999999999999864
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.1e-58 Score=405.19 Aligned_cols=210 Identities=28% Similarity=0.399 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 23 ~~l~i~~l~~~y~~~-----~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 97 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL-----EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97 (263)
T ss_dssp CSEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHH
T ss_pred heEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHH
Confidence 379999999999753 599999999999999999999999999999999999999999999965
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..+..+ ||.+|+.++. ...+....+..+++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 98 ~~~~i~~v~Q~~~l~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHM-TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp HHHHEEEECSSCCCCTTS-CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred HhCcEEEEeCCCcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 279999997643333 9999998853 33344455556778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++..+++.|+++.++ |+|||+||||++++. +||++++|++|++++.|+++++++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998653 689999999999985 7999999999999999999998764
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.3e-58 Score=397.38 Aligned_cols=203 Identities=31% Similarity=0.395 Sum_probs=181.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~y~~~-----~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (224)
T 2pcj_A 3 EILRAENIKKVIRGY-----EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77 (224)
T ss_dssp EEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHH
T ss_pred cEEEEEeEEEEECCE-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 78 ~~~~~~i~~v~q~~~l~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 78 LLRNRKLGFVFQFHYLIPE-LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HHHHHHEEEECSSCCCCTT-SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEecCcccCCC-CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 38999999864433 399999988654334444555677889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++++.+||++++|++|++++.|+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999998653 689999999999887899999999999999885
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-58 Score=405.17 Aligned_cols=210 Identities=29% Similarity=0.379 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 79 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79 (262)
T ss_dssp CCEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred ceEEEeeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccc
Confidence 379999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQ 163 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq 163 (263)
.++|+||++..+..+ ||.+|+.++. ...+....+..+++.++++.+||.+. .++++.+|||||
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l-tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTS-CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred ccccChhhHHHHhcceEEEecCcccCCCC-cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 279999997543333 9999998853 33344445556778899999999998 999999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++++ .+||++++|++|++++.|+
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 68999999999998 4899999999999999999
Q ss_pred hhhHHhh
Q 024738 243 GVSILNF 249 (263)
Q Consensus 243 ~~~~~~~ 249 (263)
++++++.
T Consensus 237 ~~~~~~~ 243 (262)
T 1b0u_A 237 PEQVFGN 243 (262)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998764
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9e-58 Score=402.27 Aligned_cols=206 Identities=29% Similarity=0.409 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 6 EILRTENIVKYFGEF-----KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80 (257)
T ss_dssp EEEEEEEEEEEETTE-----EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred cEEEEeeeEEEECCE-----eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999964
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC--CC-----------CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN--LN-----------LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 164 (263)
.++|+||++..+.. .||.+|+.++... .+ ....+..+++.++++.+|+++..++++.+||||||
T Consensus 81 ~~~i~~v~q~~~l~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLKE-MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp HHTEEECCCCCGGGGG-SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred hCCEEEEccCCccCCC-CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHH
Confidence 38999999854332 3999999886533 12 22344456788999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++++ .+||++++|++|++++.|++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999998643 68999999999997 58999999999999999999
Q ss_pred hh
Q 024738 244 VS 245 (263)
Q Consensus 244 ~~ 245 (263)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.9e-58 Score=405.47 Aligned_cols=209 Identities=28% Similarity=0.445 Sum_probs=187.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~l~~~~l~~~~~~~-----~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ-----ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred ceEEEEeEEEEeCCe-----eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence 489999999999763 699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh---
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--- 175 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--- 175 (263)
.++|++|++...+. .||.+|+.++.... ...+.++++.++++.+++.++.++++.+|||||||||+|||||+.
T Consensus 85 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 85 RTRAVMRQYSELAFP-FSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHEEEECSCCCCCSC-CBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred heEEEEecCCccCCC-CCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 27999999865443 49999999875433 223345678899999999999999999999999999999999999
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ---ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ---~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++..+++.|++++++ +++|||+||||++++ .+||++++|++|++++.|+++++++.
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 99999999999999999999999999998654 357999999999998 58999999999999999999998754
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.3e-58 Score=418.47 Aligned_cols=212 Identities=33% Similarity=0.476 Sum_probs=191.8
Q ss_pred cceEEEEeEEEEE-CCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 31 GVAIECSNLNYSI-TKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y-~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
+.+|+++||+|+| ++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 12 ~~~l~~~~l~~~y~g~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA-----RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp CEEEEEEEEEECCTTST-----TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred CceEEEEEEEEEEcCCC-----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhh
Confidence 4589999999999 643 599999999999999999999999999999999999999999999964
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++..++.+ ||.+|+.|++...+...++.++++.++++.++|++++++++.+|||||||||+|||||+.+|+
T Consensus 87 r~ig~v~Q~~~l~~~l-tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 87 RNVGLVFQNYALFQHM-TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp SSEEEECGGGCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEecCcccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 489999998654444 999999998655455566667889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||++||+..+.++++.|+++.++ .|+|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDE-MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998654 368999999999997 58999999999999999999999764
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-57 Score=400.86 Aligned_cols=210 Identities=27% Similarity=0.358 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 14 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp CCEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CeEEEEEEEEEECCE-----EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhh
Confidence 379999999999753 599999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|+||++..+.. .|+.+|+.++....+....+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++
T Consensus 89 ~i~~v~q~~~l~~~-ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 89 LISYLPEEAGAYRN-MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TEEEECTTCCCCTT-SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEcCCCCCCCC-CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 48999999864433 39999998864333344444556788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.++..+++.|+++.++ |+|||++|||++++. +||++++|++|++++.|+++++.+.
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999998642 689999999999985 7999999999999999999998653
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-57 Score=417.65 Aligned_cols=210 Identities=35% Similarity=0.489 Sum_probs=190.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|+++ ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV-----KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV 77 (359)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcE
Confidence 59999999999753 599999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.|++...+....+.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++||
T Consensus 78 g~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL 156 (359)
T 2yyz_A 78 GMVFQNYALYPHM-TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156 (359)
T ss_dssp EEECSSCCCCTTS-CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998654444 999999998755444444556778899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|.|+|+||||++++ ..||++++|++|+++..|+++++++.
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 157 FDEPLSNLDANLRMIMRAEIKHLQQE-LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 58999999999999999999999865
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-57 Score=394.82 Aligned_cols=210 Identities=24% Similarity=0.342 Sum_probs=184.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp SEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CceEEEEeEEEEECCe-----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 3589999999999753 599999999999999999999999999999999999999999999964
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-CCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-MSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..+... |+.+|+.++... .....+..+++.++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~~i~~v~q~~~l~~~l-tv~enl~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPEL-TVYENLMMGAYN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp HHTTEEEECSSCCCCTTS-BHHHHHHGGGTT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred HhCCEEEEecCCccCCCC-cHHHHHHHhhhc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 289999998543333 999999886421 1223344567788999995 9888999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++..+++.|+++.+ .|+|||++|||++++ .+||++++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999864 368999999999887 68999999999999999999988753
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-57 Score=417.26 Aligned_cols=210 Identities=33% Similarity=0.444 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGNF-----TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV 77 (362)
T ss_dssp CEEEEEEEEESSSS-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEeEEEEECCE-----EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcE
Confidence 59999999999753 599999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.+++...+...++.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++||
T Consensus 78 g~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 156 (362)
T 2it1_A 78 GLVFQNWALYPHM-TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156 (362)
T ss_dssp EEECTTCCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998654444 999999998654455566667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|+|+|+||||++++ .+||++++|++|++++.|+++++++.
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 157 LDEPLSNLDALLRLEVRAELKRLQKE-LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EESGGGGSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECccccCCHHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 368999999999997 68999999999999999999999864
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.5e-57 Score=416.01 Aligned_cols=210 Identities=29% Similarity=0.412 Sum_probs=190.6
Q ss_pred eEEEEeEEEEECCCcccccc--ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVP--ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~--iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
+|+++||+|+|++ .+ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 3 ~l~i~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~ 77 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77 (353)
T ss_dssp CEEEEEEEEEEGG-----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS
T ss_pred EEEEEeEEEEECC-----EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC
Confidence 6999999999975 26 99999999999999999999999999999999999999999999854
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..++.+ ||.+|+.++....+...++.++++.++++.++|+++.++++.+|||||||||+|||||+
T Consensus 78 ~~~~r~ig~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~ 156 (353)
T 1oxx_K 78 PPEDRKIGMVFQTWALYPNL-TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (353)
T ss_dssp CGGGSCEEEEETTSCCCTTS-CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred ChhhCCEEEEeCCCccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 379999998654444 99999999876555556666778999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||++||+..+.++++.|+++.++ .|+|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSR-LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH-HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998653 368999999999997 58999999999999999999999764
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.1e-57 Score=416.75 Aligned_cols=210 Identities=31% Similarity=0.455 Sum_probs=186.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 11 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGNF-----TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85 (372)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred eEEEEEEEEEECCE-----EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcE
Confidence 59999999999753 599999999999999999999999999999999999999999999965 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.|++...+...++.++++.++++.++|.+++++++.+|||||||||+|||||+.+|++||
T Consensus 86 g~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 164 (372)
T 1v43_A 86 SMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164 (372)
T ss_dssp EEEEC------CC-CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998654444 999999998655555666667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|.|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKKLQQK-LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 68999999999999999999999865
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.5e-57 Score=416.19 Aligned_cols=210 Identities=29% Similarity=0.461 Sum_probs=190.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~ 77 (372)
T 1g29_1 3 GVRLVDVWKVFGEV-----TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (372)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred EEEEEeEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC
Confidence 69999999999753 599999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.+||+||++..++.+ ||.+|+.|++...+....+.++++.++++.++|+++.++++.+|||||||||+|||||+.
T Consensus 78 ~~~r~ig~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 78 PKDRDIAMVFQSYALYPHM-TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp GGGSSEEEECSCCCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred HhHCCEEEEeCCCccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 379999998654444 999999998655555566667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||++||+..+..+++.|+++.++ .|.|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ-LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998654 368999999999997 58999999999999999999999865
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3e-56 Score=391.80 Aligned_cols=209 Identities=29% Similarity=0.445 Sum_probs=185.4
Q ss_pred ceEEEEeEEEEEC-CCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 32 VAIECSNLNYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 32 ~~l~~~nl~~~y~-~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
++|+++||+++|+ ++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+.++|+||++..
T Consensus 3 ~~l~i~~l~~~y~~~~-----~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 3 KALSVENLGFYYQAEN-----FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEEEEEEEETTTT-----EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCC
T ss_pred ceEEEeeEEEEeCCCC-----eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCcc
Confidence 3799999999997 43 59999999999999999999999999999999999999999999988889999999865
Q ss_pred cccccCHHHHHHhhccCC-C---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 111 QVVMPTVEADVAFGLGNL-N---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
++.. |+.+|+.++.... + ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 78 PFAY-SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp SSCC-BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred CCCC-CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4333 9999998864211 1 122344567889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|||+.++..+++.|+++.++ .|+|||++|||++++ .+||++++|++|+ ++.|+++++.+
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQS-QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999998653 368999999999998 5899999999999 99999988764
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-56 Score=395.90 Aligned_cols=214 Identities=29% Similarity=0.433 Sum_probs=184.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
+|+++||+++|+.......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 6999999999972100002599999999999999999999999999999999999999999999975 389
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC--cccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
|+||++...++..|+.+|+.++.... ....+..+++.++++.+||. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998632233349999998864332 22223345678899999999 9999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+++.|+++.++ |.|||+||||++++. +||++++|++|++++.|+++++++.
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999998653 689999999999985 7999999999999999999888753
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.1e-57 Score=392.29 Aligned_cols=205 Identities=29% Similarity=0.414 Sum_probs=181.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||+++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 ml~~~~l~~~y~~-------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i 72 (240)
T 2onk_A 1 MFLKVRAEKRLGN-------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI 72 (240)
T ss_dssp CCEEEEEEEEETT-------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC
T ss_pred CEEEEEEEEEeCC-------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcE
Confidence 4789999999963 59999999999 99999999999999999999999999999999965 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..+..+ |+.+|+.++....+ ....++++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||
T Consensus 73 ~~v~q~~~l~~~l-tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 73 GFVPQDYALFPHL-SVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp BCCCSSCCCCTTS-CHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred EEEcCCCccCCCC-cHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998643333 99999998653322 12225678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||+|||+.++..+++.|++++++ .|+|||++|||++++ .+||++++|++|++++.|+++++++.
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQRE-FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHH-HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999998643 267999999999987 58999999999999999999998764
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-56 Score=410.47 Aligned_cols=206 Identities=31% Similarity=0.453 Sum_probs=185.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||+++||+|+|++ . +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 1 ml~~~~l~~~y~~-----~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i 74 (348)
T 3d31_A 1 MIEIESLSRKWKN-----F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (348)
T ss_dssp CEEEEEEEEECSS-----C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred CEEEEEEEEEECC-----E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcE
Confidence 5899999999964 3 89999999999999999999999999999999999999999999975 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.++....+.... +++.++++.++|++++++++.+|||||||||+|||||+.+|++||
T Consensus 75 g~v~Q~~~l~~~l-tv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 75 AFVYQNYSLFPHM-NVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp EEECTTCCCCTTS-CHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998654444 999999987543222222 678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|+|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 151 LDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 151 LDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EECccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 68999999999999999999999864
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.5e-56 Score=396.54 Aligned_cols=212 Identities=30% Similarity=0.368 Sum_probs=183.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 19 ~~~l~~~~l~~~y~~~-----~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK-----TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp CEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred CceEEEEeEEEEECCE-----EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 3589999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCccc-ccCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVV-MPTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~-~~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|+||++...+. ..|+.+|+.++... .+...++..+++.++++.+||.+..++++.+|||||||||+||
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 37999998643222 12999999886321 1112234456788999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE--EEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA--LWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti--iivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||+.+|++|||||||+|||+.++..++++|+++.++ |+|| |+||||++++ .+||++++|++|++++.|++++++
T Consensus 174 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~--g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS--YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC--CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998653 5799 9999999997 589999999999999999998876
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 252 ~~ 253 (279)
T 2ihy_A 252 TS 253 (279)
T ss_dssp SH
T ss_pred cc
Confidence 53
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.2e-55 Score=386.64 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 15 ~~l~~~~l~~~y~~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP--NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CCEEEEEEEECCTTCT--TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ceEEEEEEEEEeCCCC--CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHh
Confidence 3799999999997510 13699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV-----RSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++..+ . .|+.+|+.++..... ...+. ...+.++++.+ |+....++++.+|||||||||+|||
T Consensus 93 ~~i~~v~Q~~~l~-~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 93 TQVAAVGQEPLLF-G-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHEEEECSSCCCC-S-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred ccEEEEecCCccc-c-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 389999998643 3 399999998643221 11221 12345677887 7888889999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|++|||||||+|||+.++..+++.|+++.++ .|+|||+||||++.+..||++++|++|++++.|+++++++.
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW-ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT-TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999997543 36899999999999877999999999999999999998754
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.4e-55 Score=392.77 Aligned_cols=206 Identities=31% Similarity=0.440 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 53 ~i~~~~vs~~y~~~----~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 53 RIEFENVHFSYADG----RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CEEEEEEEEESSTT----CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred eEEEEEEEEEcCCC----CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 69999999999643 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++||||++.. +..|+++|+.++.... ..++..+.+ .+.++.+ |++....+++.+|||||||||+||||
T Consensus 129 ~i~~v~Q~~~l--f~~Tv~eNi~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 129 HIGVVPQDTVL--FNDTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp TEEEECSSCCC--CSEEHHHHHHTTSTTC--CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred ceEEEecCCcc--CcccHHHHHHhhcccC--CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 48999999853 3449999999874322 222222111 1122222 45556677788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+.+|++|||||||++||+.++..+++.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCA---NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT---TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC---CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999853 4799999999999877999999999999999999999875
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.4e-54 Score=382.53 Aligned_cols=211 Identities=27% Similarity=0.339 Sum_probs=179.2
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC--------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR-------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~-------- 99 (263)
..++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 17 ~~~~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp ---CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CCceEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 34589999999999753 599999999999999999999999999999999999 468999999965
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhhcc-------CCCCChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFGLG-------NLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQK 164 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqk 164 (263)
.++|+||++..+..+ |+.+|+.+... ......++..+++.++++.+|+. ...++++. +||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~-tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGV-SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTC-BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHhhCCEEEEccCccccccc-cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 278999998654333 89998876431 11123344456788999999996 57888887 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecC
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~ 242 (263)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++|||++++. . ||++++|++|++++.|+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999998743 3689999999999985 4 89999999999999999
Q ss_pred hhhHHh
Q 024738 243 GVSILN 248 (263)
Q Consensus 243 ~~~~~~ 248 (263)
++++..
T Consensus 249 ~~~~~~ 254 (267)
T 2zu0_C 249 FTLVKQ 254 (267)
T ss_dssp TTHHHH
T ss_pred HHHHhh
Confidence 988753
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-54 Score=379.70 Aligned_cols=204 Identities=31% Similarity=0.391 Sum_probs=173.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~----------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred eEEEEeEEEEECCE-----EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH
Confidence 69999999999753 599999999999999999999999999999999999 789999999965
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhcc---CCCCChHHHHHHHHHHHHHcCC-CcccCCCCCC-CChHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLG---NLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQT-LSGGQKQRVAIAG 171 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~-LSgGqkqRv~lAr 171 (263)
.++|+||++..+.. .|+.+|+.++.. .......+..+++.++++.+|+ .+..++++.+ |||||||||+|||
T Consensus 78 ~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 78 ARKGLFLAFQYPVEVPG-VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp HHTTBCCCCCCCC-CCS-CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred HhCcEEEeccCCccccC-CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 26799999865433 399999987532 1112233445678889999999 4788999999 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 244 (263)
||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||+||||++++. . ||++++|++|++++.|+++
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999853 3689999999999985 5 5999999999999999987
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.6e-54 Score=376.66 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEC-CCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 33 AIECSNLNYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 33 ~l~~~nl~~~y~-~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.++++||+|+|+ ++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 7 ~~~~~~l~~~y~~~~----~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS----PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTS----CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred ceeEEEEEEEeCCCC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 699999999993 22 2599999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ . .|+.+|+.++.. ... .+++.++++.+++.++ +++++.+|||||||||
T Consensus 83 ~~i~~v~Q~~~l~-~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 83 RQVGVVLQDNVLL-N-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHEEEECSSCCCT-T-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred hcEEEEeCCCccc-c-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 389999998643 3 399999988632 122 2334456666666543 4456789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+.+|++|||||||+|||+.++..+++.|+++. + |+|||+||||++.+..||++++|++|++++.|++++++
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K--GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T--TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999983 2 68999999999988779999999999999999999987
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 232 ~~ 233 (247)
T 2ff7_A 232 SE 233 (247)
T ss_dssp TS
T ss_pred hC
Confidence 54
No 29
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.9e-54 Score=373.09 Aligned_cols=203 Identities=25% Similarity=0.390 Sum_probs=170.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.++|+||++..+
T Consensus 5 ~~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEG---GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTT---SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCccc
Confidence 479999999999631 13699999999999999999999999999999999999999999999999999999998643
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
. .|+.+|+.++.. .... +..++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 82 -~-~tv~enl~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 82 -P-GTIKENIIFGVS---YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp -S-BCHHHHHHTTSC---CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred -C-CCHHHHhhccCC---cChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2 399999988632 1111 1223344444432 234456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAV-KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l-~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+++.+ .++. .++|||++|||++++..||++++|++|++++.|+++++.+.
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999864 4542 25799999999998877999999999999999999988764
No 30
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.8e-54 Score=374.96 Aligned_cols=208 Identities=27% Similarity=0.355 Sum_probs=171.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
+|+++||+++|++. ..++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.++|+||++..
T Consensus 3 ~l~~~~l~~~y~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~-- 77 (237)
T 2cbz_A 3 SITVRNATFTWARS---DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI-- 77 (237)
T ss_dssp CEEEEEEEEESCTT---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCC--
T ss_pred eEEEEEEEEEeCCC---CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcC--
Confidence 59999999999731 1369999999999999999999999999999999999999999999999999999999852
Q ss_pred cccCHHHHHHhhccCCCCChHHHHHHHHH---HHHHcCCC-----cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 113 VMPTVEADVAFGLGNLNLTHDEVRSKVAK---ALDAVGMS-----NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+..|+.+|+.++... ..+.. +++.+ +++.+++. ..+++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~tv~enl~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 78 QNDSLRENILFGCQL---EEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp CSEEHHHHHHTTSCC---CTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCcCHHHHhhCcccc---CHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334999999886422 11111 12212 23334432 23578899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+|||+.++..+++.|.+.....+|+|||++|||++.+..||++++|++|++++.|+++++++.
T Consensus 154 Pts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999998521110136899999999998878999999999999999999998764
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.7e-54 Score=375.05 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.+++
T Consensus 3 ~~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~ 72 (249)
T 2qi9_C 3 IVMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLA 72 (249)
T ss_dssp EEEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHH
T ss_pred cEEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHh
Confidence 37999999986 2899999999999999999999999999999999999999 9999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++..+.. .|+.+|+.++... ... .+++.++++.+|+.++.++++.+||||||||++|||||+.+|+
T Consensus 73 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFA-TPVWHYLTLHQHD-KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp HHEEEECSCCCCCTT-CBHHHHHHTTCSS-TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred ceEEEECCCCccCCC-CcHHHHHHHhhcc-CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 38999999864332 3999999886321 111 4567889999999999999999999999999999999999999
Q ss_pred -------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 179 -------VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 179 -------llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|||||||+|||+.++..+++.|+++.++ |+|||++|||++++ .+||++++|++|++++.|+++++.+
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999998643 68999999999998 6899999999999999999988865
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-54 Score=375.49 Aligned_cols=203 Identities=28% Similarity=0.469 Sum_probs=175.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ml~~~~l~~~y~~~----~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T 1mv5_A 1 MLSARHVDFAYDDS----EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (243)
T ss_dssp CEEEEEEEECSSSS----SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred CEEEEEEEEEeCCC----CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 48999999999422 2699999999999999999999999999999999999999999999964
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccC-----------CCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-----------RPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~ 168 (263)
.++|+||++..+ . .|+.+|+.++... ... .+++.++++.+++.++.+ +++.+|||||||||+
T Consensus 77 ~i~~v~q~~~l~-~-~tv~enl~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 77 QIGFVSQDSAIM-A-GTIRENLTYGLEG-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp TCCEECCSSCCC-C-EEHHHHTTSCTTS-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred hEEEEcCCCccc-c-ccHHHHHhhhccC-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 379999998643 2 4999999876321 122 234667788888876554 456799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+.+|++|||||||+|||+.++..+++.|+++. + |+|||++|||++.+..||++++|++|++++.|+++++++
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K--GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T--TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999985 3 689999999999887799999999999999999998876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 227 ~ 227 (243)
T 1mv5_A 227 T 227 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-53 Score=376.47 Aligned_cols=202 Identities=26% Similarity=0.336 Sum_probs=177.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
||+++||+++|++.. ...++|+|+||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+++ .++
T Consensus 1 ml~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheE
Confidence 589999999997510 00259999999999 9999999999999999999999999 9999999976 589
Q ss_pred -EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 103 -FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 103 -~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
|+||++.. ..|+.+|+.++...... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 78 ~~v~Q~~~l---~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 150 (263)
T 2pjz_A 78 TNLPEAYEI---GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV 150 (263)
T ss_dssp ECCGGGSCT---TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EEeCCCCcc---CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999864 34999999886432211 135677899999999 9999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCC-EEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYAD-GAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d-~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||++||+.++..+++.|+++. . |||++|||++++ ++|| ++++|++|++++.|+++++.+.
T Consensus 151 lLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 151 GLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999999999999862 2 999999999997 5899 9999999999999999998753
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.6e-52 Score=368.10 Aligned_cols=204 Identities=29% Similarity=0.439 Sum_probs=173.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+++|+++. ..++|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.+++
T Consensus 16 ~~l~i~~l~~~y~~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT--NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCC--SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCC--cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHh
Confidence 3799999999997531 13599999999999999999999999999999999999987 89999965
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ . .|+.+|+.++.. ... .+++.++++.+++.+. .++++.+|||||||||
T Consensus 93 ~~i~~v~Q~~~l~-~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 93 SIIGIVPQDTILF-N-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TTEEEECSSCCCC-S-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred ccEEEEcCCCccc-c-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 389999998643 2 499999988532 122 2334556666665432 3567899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+.+|++|||||||+|||+.++..+++.|+++. + ++|||+||||++.+..||++++|++|++++.|++++++
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~--~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K--NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T--TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C--CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999984 2 57999999999988779999999999999999999987
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 242 ~~ 243 (260)
T 2ghi_A 242 KL 243 (260)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-53 Score=363.93 Aligned_cols=193 Identities=21% Similarity=0.330 Sum_probs=165.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSF 103 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~ 103 (263)
.+|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|
T Consensus 9 ~~l~~~~ls~~y~~------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~ 82 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82 (214)
T ss_dssp CEEEEEEEEEESSS------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred ceEEEEEEEEEeCC------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE
Confidence 48999999999964 399999999999999999999999999999999999999999999976 4899
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
+||++..+.. .|+.+|+.++....+. ..+ .+++.++++.+|+++. ++++.+||||||||++|||||+.+|++||||
T Consensus 83 v~q~~~~~~~-~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 83 LPEEIIVPRK-ISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp ECSSCCCCTT-SBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EeCCCcCCCC-CCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999864332 3999999886432221 112 4567889999999988 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
|||+|||+.++..+++.|+++.++ |+|||++|||++++. +||+++++ +|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999998643 579999999999985 68887744 4554
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-52 Score=383.90 Aligned_cols=202 Identities=25% Similarity=0.324 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.+++
T Consensus 18 ~~i~~~~l~~~y~~~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGG---NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp CCEEEEEEEEESSSSS---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CeEEEEEEEEEecCCC---eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 3699999999995321 369999999999999999999999999999999999998 999999965
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCC-----------CChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT-----------LSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv 167 (263)
.++|+||++..+. .|+++|+.+.. ... ++++.++++.++|.++.++++.+ |||||||||
T Consensus 94 r~ig~v~Q~~~lf~--~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv 164 (390)
T 3gd7_A 94 KAFGVIPQKVFIFS--GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM 164 (390)
T ss_dssp HTEEEESCCCCCCS--EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH
T ss_pred CCEEEEcCCcccCc--cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH
Confidence 4899999986432 49999987432 111 34567899999999999999988 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+.+|++|||||||++||+..+..+++.|+++. .++|+|++|||++.+..||||++|++|++++.|++++++
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998763 358999999999877789999999999999999999998
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
..
T Consensus 242 ~~ 243 (390)
T 3gd7_A 242 HY 243 (390)
T ss_dssp HC
T ss_pred hC
Confidence 75
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.3e-50 Score=393.20 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=174.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 339 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE---APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CEEEEEEEECSCSSS---CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCC---CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 699999999997532 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++.. +..|++||+.++... ... +++.++++..++. ...++++.+||||||||++
T Consensus 416 ~i~~v~Q~~~l--~~~tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~ 487 (578)
T 4a82_A 416 QIGLVQQDNIL--FSDTVKENILLGRPT--ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487 (578)
T ss_dssp TEEEECSSCCC--CSSBHHHHHGGGCSS--CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred heEEEeCCCcc--CcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH
Confidence 48999999853 334999999987432 222 2334455555443 3344556799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.++..+.+.++++.+ ++|+|+||||++.++.||++++|++|++++.|+++++++
T Consensus 488 lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998742 579999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 565 ~ 565 (578)
T 4a82_A 565 K 565 (578)
T ss_dssp T
T ss_pred C
Confidence 5
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.9e-51 Score=395.44 Aligned_cols=207 Identities=28% Similarity=0.433 Sum_probs=176.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 341 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 341 SVSFENVEFRYFENT---DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CEEEEEEEECSSSSS---CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred cEEEEEEEEEcCCCC---CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 699999999996432 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++|++|++.. +..|++||+.++... ...++..+.+ .+.++.+ |++...++++.+||||||||++||||
T Consensus 418 ~i~~v~Q~~~l--f~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 418 HISAVPQETVL--FSGTIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp HEEEECSSCCC--CSEEHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred heEEECCCCcC--cCccHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 48999999864 344999999886432 2233322221 1222222 55666788899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 494 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999873 36899999999999989999999999999999999999875
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.1e-51 Score=364.14 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=154.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+|+++||++.+ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++++++|+||++..+
T Consensus 39 ~~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111 (290)
T ss_dssp -----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCC
T ss_pred ceEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccC
Confidence 479999999863 1599999999999999999999999999999999999999999999999999999998643
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
. .|+.+|+. +.. .... ...++++.+++.+. +++++.+||||||||++|||||+.+|++|
T Consensus 112 -~-~tv~enl~-~~~---~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 112 -P-GTIKENII-GVS---YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp -S-SBHHHHHH-TTC---CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred -c-ccHHHHhh-Ccc---cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 2 39999997 431 1111 22334444555332 33456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 181 LLDELTTFLDESDQFGVIEAV-KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l-~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||||+|||+.++..+++.+ .++. .|+|||++|||++.+..||++++|++|++++.|++++++.
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999864 4442 2689999999999887899999999999999999998865
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.7e-50 Score=389.03 Aligned_cols=205 Identities=28% Similarity=0.448 Sum_probs=176.0
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 340 ~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKE---KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CeEEEEEEEEEcCCCC---ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 3799999999997421 3699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv 167 (263)
+++|+||++..+ ..|+++|+.++.. ...+ ++++.++++.+++.+. .++++.+||||||||+
T Consensus 417 ~~i~~v~Q~~~l~--~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 417 RHFALVSQNVHLF--NDTIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred cCeEEEcCCCccc--cccHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 489999998643 3499999998641 1222 2345566666666544 3445689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.++.||++++|++|++++.|++++++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQK---NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999742 68999999999998889999999999999999999997
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 567 ~~ 568 (582)
T 3b5x_A 567 AQ 568 (582)
T ss_pred hC
Confidence 64
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.2e-50 Score=389.29 Aligned_cols=205 Identities=29% Similarity=0.435 Sum_probs=176.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 340 ~~i~~~~v~~~y~~~~---~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 340 GDLEFRNVTFTYPGRE---VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCEEEEEEEECSSSSS---CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CcEEEEEEEEEcCCCC---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 3699999999997421 2699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv 167 (263)
+++|+||++..+ ..|+++|+.++.. ...+. +++.++++.+++.+ ..++++.+||||||||+
T Consensus 417 ~~i~~v~Q~~~l~--~~tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 417 NQVALVSQNVHLF--NDTVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HTEEEECSSCCCC--SSBHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred hhCeEEccCCcCC--CCCHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 489999998643 3499999998641 12222 34555666665543 44556789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|++||+++.++.||++++|++|++++.|++++++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999852 57999999999998889999999999999999999997
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 567 ~~ 568 (582)
T 3b60_A 567 AQ 568 (582)
T ss_dssp HH
T ss_pred Hc
Confidence 64
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-50 Score=392.37 Aligned_cols=202 Identities=28% Similarity=0.446 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 354 ~i~~~~v~~~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK----KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSSSS----SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEECCCC----CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 69999999999753 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC-----------CCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV-----------QTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~ 168 (263)
+++|++|++.. +..|+++|+.++... .+.+ ++.++++.+++.+..++.+ .+||||||||++
T Consensus 430 ~i~~v~Q~~~l--f~~tv~eni~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 430 SIGIVLQDTIL--FSTTVKENLKYGNPG--ATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp HEEEECTTCCC--CSSBHHHHHHSSSTT--CCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred ceEEEeCCCcc--ccccHHHHHhcCCCC--CCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 48999999853 334999999986322 2222 2345556666655444443 799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME---GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT---TSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999842 689999999999998899999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 579 ~ 579 (598)
T 3qf4_B 579 K 579 (598)
T ss_dssp T
T ss_pred C
Confidence 5
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.3e-50 Score=390.17 Aligned_cols=204 Identities=32% Similarity=0.512 Sum_probs=173.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 342 i~~~~v~~~y~~~~--~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPARP--EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSSCT--TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCCCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 99999999997531 13599999999999999999999999999999999999999999999975 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
++|++|++..+ ..|+++|+.++.... ..+ ++++.++++.+++.+. ..+++.+||||||||++
T Consensus 420 i~~v~Q~~~l~--~~tv~eni~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~ 493 (595)
T 2yl4_A 420 IGTVSQEPILF--SCSIAENIAYGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 493 (595)
T ss_dssp EEEECSSCCCC--SSBHHHHHHTTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHH
T ss_pred eEEEccCCccc--CCCHHHHHhhcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 89999998643 349999999874321 122 2445667777776433 33445899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|++|||++.++.||++++|++|++++.|+++++++
T Consensus 494 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 494 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD---GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT---TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999853 579999999999988899999999999999999999876
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-48 Score=406.84 Aligned_cols=206 Identities=30% Similarity=0.463 Sum_probs=177.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|
T Consensus 1076 ~I~f~nVsf~Y~~~~--~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP--EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSC--SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCC--CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 599999999997532 24699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
++++|||+|. .+..|+++|+.++......+.++ +.++++..++ +.........||||||||++
T Consensus 1154 ~i~~V~Qdp~--LF~gTIreNI~~gld~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQria 1227 (1321)
T 4f4c_A 1154 QIAIVSQEPT--LFDCSIAENIIYGLDPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIA 1227 (1321)
T ss_dssp TEEEECSSCC--CCSEEHHHHHSSSSCTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHH
T ss_pred heEEECCCCE--eeCccHHHHHhccCCCCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHH
Confidence 5899999985 34569999999875433344433 4455555544 33344456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+++.+.+.+.|++.. +++|+|+|+|+++.+..||+|+||++|+|++.|+++++++
T Consensus 1228 iARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1228 IARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998763 3689999999999999999999999999999999999997
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-46 Score=392.96 Aligned_cols=204 Identities=31% Similarity=0.464 Sum_probs=177.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. +.++|+|+||+|++|+.+||+||||||||||+++|.|+++|++|+|.++|
T Consensus 415 ~I~~~nvsF~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP--DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSST--TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCCC--CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 599999999997532 24799999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----------GMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
+++||+|+|. .+..|+++|+.++.. ..+.++ +.++++.. |++.........||||||||++
T Consensus 493 ~i~~v~Q~~~--Lf~~TI~eNI~~g~~--~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia 564 (1321)
T 4f4c_A 493 NVAVVSQEPA--LFNCTIEENISLGKE--GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA 564 (1321)
T ss_dssp HEEEECSSCC--CCSEEHHHHHHTTCT--TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH
T ss_pred cccccCCcce--eeCCchhHHHhhhcc--cchHHH----HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH
Confidence 5999999985 345699999999743 233333 33444443 3444455667899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++++|++||||||||+||+.++..+.+.|.++.+ |+|+|+|||++..++.||+|++|++|+|++.|+++++++
T Consensus 565 iARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~---~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 565 IARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK---GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT---TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC---CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999999999999998753 579999999999999999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 642 ~ 642 (1321)
T 4f4c_A 642 Q 642 (1321)
T ss_dssp T
T ss_pred h
Confidence 4
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.6e-47 Score=368.96 Aligned_cols=207 Identities=27% Similarity=0.326 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
..+++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+...++|+||++..
T Consensus 355 ~~~l~~~~l~~~~~~------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428 (607)
T ss_dssp CEEEEECCEEEECSS------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCC
T ss_pred ceEEEEeceEEEecc------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccC
Confidence 458999999999975 36899999999999999999999999999999999999999999988889999999754
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
.+ ..||.+++...... .....+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 429 ~~-~~tv~e~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 429 EY-EGTVYELLSKIDSS----KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp CC-SSBHHHHHHHHHHH----HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred CC-CCcHHHHHHhhhcc----CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 33 33898877653110 00113457788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeC--CEEEEecChhhHHhh
Q 024738 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMED--GKIVMQADGVSILNF 249 (263)
Q Consensus 191 ~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~--G~i~~~g~~~~~~~~ 249 (263)
+.++..+++.|++++++ .|.|||+||||++++. +|||+++|++ |++...|+++++++.
T Consensus 504 ~~~~~~l~~~l~~l~~~-~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 504 VEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999999998643 3679999999999984 7999999986 888889999888763
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.4e-47 Score=365.55 Aligned_cols=207 Identities=27% Similarity=0.325 Sum_probs=178.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
.++++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+...++|++|++..
T Consensus 285 ~~~l~~~~l~~~~~~------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358 (538)
T ss_dssp CEEEEECCEEEEETT------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCC
T ss_pred CeEEEEeeEEEEECC------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcC
Confidence 458999999999975 36899999999999999999999999999999999999999999988889999999764
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
.+ ..||.+++...... ... ..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 359 ~~-~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD 433 (538)
T 1yqt_A 359 DY-EGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433 (538)
T ss_dssp CC-SSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred CC-CCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 33 33898876543110 001 12456788999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC--CEEEEecChhhHHhh
Q 024738 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED--GKIVMQADGVSILNF 249 (263)
Q Consensus 191 ~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~--G~i~~~g~~~~~~~~ 249 (263)
+.++..+++.|++++++ .|.|||+||||++++ .+|||+++|++ |+++..|+++++++.
T Consensus 434 ~~~~~~i~~~l~~l~~~-~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 434 VEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999999999998643 257999999999998 58999999986 788899999888753
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.9e-46 Score=387.68 Aligned_cols=206 Identities=29% Similarity=0.448 Sum_probs=174.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 1030 ~i~~~~v~~~y~~~~--~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP--SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGG--GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred cEEEEEEEEECCCCC--CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 699999999997531 23699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++||||++.. +..|+++|+.++......+.++.. ++++..++. ........+||||||||++
T Consensus 1108 ~i~~v~Q~~~l--~~~ti~eNi~~~~~~~~~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1108 QLGIVSQEPIL--FDCSIAENIAYGDNSRVVSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp SCEEEESSCCC--CSSBHHHHHTCCCSSCCCCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred ceEEECCCCcc--ccccHHHHHhccCCCCCCCHHHHH----HHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 48999999853 345999999886533333333333 333443433 2334456799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.+++.+.+.|++.. +|+|+|+||||++.+..||||++|++|++++.|+++++++
T Consensus 1182 iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998852 3689999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1259 ~ 1259 (1284)
T 3g5u_A 1259 Q 1259 (1284)
T ss_dssp S
T ss_pred C
Confidence 5
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-45 Score=385.80 Aligned_cols=208 Identities=31% Similarity=0.442 Sum_probs=175.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 387 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK--EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CEEEEEEEECCSSTT--SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCC--CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 599999999997531 24699999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++||+|+|.. +..|+++|+.++... ...++..+.+. +.++.+ |++.....++.+||||||||++||||
T Consensus 465 ~i~~v~Q~~~l--~~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa 540 (1284)
T 3g5u_A 465 IIGVVSQEPVL--FATTIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540 (1284)
T ss_dssp HEEEECSSCCC--CSSCHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH
T ss_pred heEEEcCCCcc--CCccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH
Confidence 38999999853 345999999987532 33333333222 223333 34445567788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+.+|++||||||||+||+.+...+.+.++++. +|+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 541 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAR---EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH---TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998864 26899999999999988999999999999999999998764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.5e-46 Score=356.70 Aligned_cols=206 Identities=21% Similarity=0.293 Sum_probs=175.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-ceEEEecCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-PKSFVFQNPD 109 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-~~~~v~q~~~ 109 (263)
.+.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+ .++|++|+..
T Consensus 267 ~~~l~~~~l~~~~~~------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~ 340 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340 (538)
T ss_dssp CEEEEECCEEEEETT------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCC
T ss_pred cceEEEcceEEEECC------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcc
Confidence 458999999999975 368888999999999999999999999999999999999999998865 5899999865
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
..+ ..|+.+|+.+..... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 341 ~~~-~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gL 416 (538)
T 3ozx_A 341 PNY-DGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL 416 (538)
T ss_dssp CCC-SSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred ccc-CCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 432 349999987642221 111 1234678899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeC--CEEEEecChhhHH
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMED--GKIVMQADGVSIL 247 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~--G~i~~~g~~~~~~ 247 (263)
|+.++..++++|++++++ .|.|||+||||++++. +||||++|++ |.....+++.++.
T Consensus 417 D~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 417 DVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999998754 3689999999999985 7999999986 5666667665543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-45 Score=352.96 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=172.6
Q ss_pred EeEEEEECCCccccccceeceeeEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSG-----QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+......++|++|+....
T Consensus 350 ~~~~~~y~~~----~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~ 425 (608)
T 3j16_B 350 ASRAFSYPSL----KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK 425 (608)
T ss_dssp SSSCCEECCE----EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCC
T ss_pred cceeEEecCc----ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccccccc
Confidence 6778888653 24799999999999 88999999999999999999999999999864444689999986543
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+ ..|+.+++....... ... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 426 ~-~~tv~e~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 426 F-PGTVRQLFFKKIRGQ-FLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp C-CSBHHHHHHHHCSST-TTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred C-CccHHHHHHHHhhcc-ccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 3 338998875433211 111 23456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC--CEEEEecChhhHHhh
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED--GKIVMQADGVSILNF 249 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~--G~i~~~g~~~~~~~~ 249 (263)
.++..++++|+++.++ .|.|||+||||++++ .+|||+++|++ |+++..|+|+++++.
T Consensus 501 ~~~~~i~~ll~~l~~~-~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 501 EQRIICSKVIRRFILH-NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999998643 368999999999998 57999999996 899999999998875
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.7e-43 Score=355.54 Aligned_cols=204 Identities=23% Similarity=0.406 Sum_probs=163.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++|++|+|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++ +++|++|++
T Consensus 669 ~~mL~v~nLs~~Y~g~~---~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~ 745 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS---KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 745 (986)
T ss_dssp SEEEEEEEEEECCTTCS---SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHH
T ss_pred CceEEEEeeEEEeCCCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccch
Confidence 45899999999996421 3689999999999999999999999999999999999999999999975 589999975
Q ss_pred CCc---ccccCHHHHHHhhccC----------------------------------------------------------
Q 024738 109 DHQ---VVMPTVEADVAFGLGN---------------------------------------------------------- 127 (263)
Q Consensus 109 ~~~---~~~~tv~~~~~~~~~~---------------------------------------------------------- 127 (263)
... ....|+.+++.+.+..
T Consensus 746 ~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~E 825 (986)
T 2iw3_A 746 FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGE 825 (986)
T ss_dssp HHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhh
Confidence 210 0112555554321100
Q ss_pred ---------CCCC----------------------------------hHHHHHHHHHHHHHcCCCc-c-cCCCCCCCChH
Q 024738 128 ---------LNLT----------------------------------HDEVRSKVAKALDAVGMSN-Y-LQRPVQTLSGG 162 (263)
Q Consensus 128 ---------~~~~----------------------------------~~~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgG 162 (263)
..+. .....+++.++++.+||.. . .++++.+||||
T Consensus 826 Ni~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGG 905 (986)
T 2iw3_A 826 NIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGG 905 (986)
T ss_dssp STTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHH
T ss_pred hhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHH
Confidence 0000 0001345778999999985 4 58899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|+++..|
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-----g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G 980 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----SSEEEEECSCHHHHTTTCCEEECCBTTBCCC--
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999888764 35999999999998 589999999999998776
Q ss_pred C
Q 024738 242 D 242 (263)
Q Consensus 242 ~ 242 (263)
+
T Consensus 981 ~ 981 (986)
T 2iw3_A 981 H 981 (986)
T ss_dssp -
T ss_pred C
Confidence 4
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-43 Score=339.20 Aligned_cols=186 Identities=27% Similarity=0.285 Sum_probs=153.4
Q ss_pred EEE-EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE---------EEcC----
Q 024738 34 IEC-SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV---------YVKR---- 99 (263)
Q Consensus 34 l~~-~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I---------~~~~---- 99 (263)
.++ +||+|+|++. ..+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .+.+
T Consensus 21 ~~~~~~ls~~yg~~----~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~ 95 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN----AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95 (538)
T ss_dssp ---CCCEEEECSTT----CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHH
T ss_pred hhHhcCcEEEECCc----cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHH
Confidence 565 6999999753 14899999 999999999999999999999999999999999995 2221
Q ss_pred -----------ceEEEecCCCCccc--ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 100 -----------PKSFVFQNPDHQVV--MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
.+++++|....... ..++.+++.... ..+++.++++.+|++...++++.+||||||||
T Consensus 96 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQR 166 (538)
T 1yqt_A 96 NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---------ETGKLEEVVKALELENVLEREIQHLSGGELQR 166 (538)
T ss_dssp HHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHH
Confidence 25788876432111 127777764311 11346789999999998999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
|+|||||+.+|++|||||||++||+.++.++++.|+++.+ .|.|||+||||++++ .+||+|++|++|
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE--EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999865 368999999999998 479999999864
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.8e-43 Score=342.00 Aligned_cols=187 Identities=27% Similarity=0.299 Sum_probs=157.2
Q ss_pred eEEE--------EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE---------
Q 024738 33 AIEC--------SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--------- 95 (263)
Q Consensus 33 ~l~~--------~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I--------- 95 (263)
+|++ +||+++|++. ..+|+++| +|++||+++|+||||||||||||+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~----~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~ 157 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN----AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR 157 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT----CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHH
T ss_pred eEEEecCCccccCCeEEEECCC----CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhh
Confidence 4788 8999999753 14899999 999999999999999999999999999999999995
Q ss_pred EEcC---------------ceEEEecCCCCcc--cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCC
Q 024738 96 YVKR---------------PKSFVFQNPDHQV--VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158 (263)
Q Consensus 96 ~~~~---------------~~~~v~q~~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 158 (263)
.+.+ .+++++|...... +..++.+++.... . .+++.++++.+||++.+++++.+
T Consensus 158 ~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~-----~~~~~~~L~~lgL~~~~~~~~~~ 228 (607)
T 3bk7_A 158 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----E-----VGKFEEVVKELELENVLDRELHQ 228 (607)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----C-----SSCHHHHHHHTTCTTGGGSBGGG
T ss_pred eeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----H-----HHHHHHHHHHcCCCchhCCChhh
Confidence 2221 2567787643211 1238888875310 0 13466789999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++.++ |.|||+||||++++ .+||+|++|+++
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~--g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE--GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999998653 68999999999998 479999999864
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-42 Score=341.42 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=142.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCCCCCceEE-------EEcC----
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLL---------------------KVLAGLLKPTNGHV-------YVKR---- 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLl---------------------k~i~Gl~~p~~G~I-------~~~~---- 99 (263)
.+|+||||+|++||++||+||||||||||+ +++.|+.+|+.|.| .+++
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 589999999999999999999999999998 99999999985544 4432
Q ss_pred -----ceEEEecCCCCc------------------ccccCHHHHHHhhccCC--CCChHHHH------HHHHHHHHHcCC
Q 024738 100 -----PKSFVFQNPDHQ------------------VVMPTVEADVAFGLGNL--NLTHDEVR------SKVAKALDAVGM 148 (263)
Q Consensus 100 -----~~~~v~q~~~~~------------------~~~~tv~~~~~~~~~~~--~~~~~~~~------~~~~~~l~~~~l 148 (263)
.+++++|.+... +...|+.+|+.+..... ........ ....++++.+||
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 234555543211 01127788876632110 00000000 111245888999
Q ss_pred Ccc-cCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 149 SNY-LQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 149 ~~~-~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.+. +++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+.+++++|+++.++ |.|||+||||++.+..
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEECCCHHHHHH
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhh
Confidence 864 789999999999999999999999998 99999999999999999999999998643 6899999999998878
Q ss_pred CCEEEEE------eCCEEEEecChhhHHhhhhhhhhhh
Q 024738 226 ADGAFYM------EDGKIVMQADGVSILNFIKSRQSSY 257 (263)
Q Consensus 226 ~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~ 257 (263)
||++++| ++|++++.|+++++.+........|
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 307 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY 307 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence 9999999 8999999999999876533333333
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-41 Score=340.91 Aligned_cols=195 Identities=22% Similarity=0.329 Sum_probs=161.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCC--CCceEEEEcCceEEEecCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLK--PTNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-l~~--p~~G~I~~~~~~~~v~q~~~ 109 (263)
.|...|++++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+| .+. +..+. .+++|++|++.
T Consensus 435 ~L~~~~ls~~yg~~-----~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~----~~~~~v~q~~~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK-----ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEE----CRTVYVEHDID 505 (986)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTT----SCEEETTCCCC
T ss_pred eeEEeeEEEEECCE-----EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccc----eeEEEEccccc
Confidence 57777999999763 59999999999999999999999999999999994 221 11111 13578888652
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~ 188 (263)
......|+.+|+.+ ...+. .+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++
T Consensus 506 ~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 506 GTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp CCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred ccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 22223389999875 12221 45678899999995 678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-EecChhhHHh
Q 024738 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQADGVSILN 248 (263)
Q Consensus 189 LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
||+.++..+.+.|++ . |.|||+||||++++ .+||++++|++|+++ +.|+++++..
T Consensus 579 LD~~~~~~l~~~L~~---~--g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNT---C--GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CCHHHHHHHHHHHHH---S--CSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHh---C--CCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999987 2 57999999999998 579999999999997 6899988765
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.7e-40 Score=322.11 Aligned_cols=135 Identities=28% Similarity=0.393 Sum_probs=110.6
Q ss_pred CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCC---EEEEeCCCCCCCH
Q 024738 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACK---VLLLDELTTFLDE 191 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~---llllDEPts~LD~ 191 (263)
|+.+|+.+... . . ..++..+.++.+++.. ..++++.+|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 506 tv~e~l~~~~~---~--~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~ 579 (670)
T 3ux8_A 506 TVEDALDFFAS---I--P-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV 579 (670)
T ss_dssp BHHHHHHHTTT---C--H-HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCH
T ss_pred CHHHHHHHHHH---h--h-hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCH
Confidence 67777765421 1 1 1234567888899974 5789999999999999999999999874 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhh
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYI 258 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 258 (263)
.++..++++|+++.++ |.|||+||||++.+..||+|++| ++|+++++|+++++.+........|+
T Consensus 580 ~~~~~i~~~l~~l~~~--g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~~~~ 650 (670)
T 3ux8_A 580 DDIARLLDVLHRLVDN--GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 650 (670)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccHHHHHH
Confidence 9999999999998653 68999999999988889999999 89999999999998764333333343
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-40 Score=318.42 Aligned_cols=186 Identities=25% Similarity=0.334 Sum_probs=144.1
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------EcCc------
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----------VKRP------ 100 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----------~~~~------ 100 (263)
|++++|+.+. ..|++++ ++++||++||+||||||||||||+|+|+++|++|+|. +.+.
T Consensus 82 ~~~~~Y~~~~----~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 82 HVTHRYSANS----FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TEEEECSTTS----CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CeEEEECCCc----eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 5688887542 4677777 6899999999999999999999999999999999983 1110
Q ss_pred -------e--EEEecCCCCcc-----cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 101 -------K--SFVFQNPDHQV-----VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 101 -------~--~~v~q~~~~~~-----~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
+ .+.+|...... ...++.+++.... . ...+++.++++.+||...+++++.+||||||||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qr 229 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---E----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQR 229 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---C----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---h----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHH
Confidence 1 11122111000 0002233222110 0 113567889999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
|+|||||+.+|++|||||||++||+..+..+.+.|+++.++ |.|||+||||++++ ..||++++|++|..
T Consensus 230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP--TKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT--TCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999998643 67999999999998 47999999987653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-39 Score=310.95 Aligned_cols=182 Identities=23% Similarity=0.314 Sum_probs=142.6
Q ss_pred EeEEEEECCCccccccceeceeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-----------EEcC-----
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-----------YVKR----- 99 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~-~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I-----------~~~~----- 99 (263)
++.+.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+| .+.+
T Consensus 3 ~~~~~~~~~~------~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 3 GEVIHRYKVN------GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CCEEEESSTT------SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCCceecCCC------ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 3577889864 3444455555 899999999999999999999999999999998 2322
Q ss_pred ----------ceEEEecCCCCc--ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 100 ----------PKSFVFQNPDHQ--VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ----------~~~~v~q~~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
.+....|..... .+..++.+++.... ..+++.++++.+++....++++.+|||||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID---------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch---------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 122333322111 11225665443210 012456789999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCE
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~ 236 (263)
+|||||+.+|++|||||||++||+..+..+.+.|+++.+ |+|||+||||++++ ..||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK---NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT---TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC---CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999842 68999999999998 4799999998653
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-36 Score=303.73 Aligned_cols=121 Identities=27% Similarity=0.387 Sum_probs=106.7
Q ss_pred HHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 137 SKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 137 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
.++.++++.+||.. .+++++.+|||||||||+|||||+++| ++|||||||+|||+..++.+++.|+++.++ |.|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~--G~T 860 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR--GNT 860 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCE
Confidence 45678899999975 568999999999999999999999876 799999999999999999999999998653 689
Q ss_pred EEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 213 ALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
||+||||++.++.||+|++| ++|+|++.|+++++++........|+.
T Consensus 861 VIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~ 913 (916)
T 3pih_A 861 VIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913 (916)
T ss_dssp EEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHHT
T ss_pred EEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHHH
Confidence 99999999998889999999 899999999999998764444445554
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=8.3e-37 Score=305.38 Aligned_cols=122 Identities=25% Similarity=0.370 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 137 SKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEA---CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 137 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~---p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
+++.++++.+||.. .+++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..++++|++++++ |.|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~t 785 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA--GNT 785 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCE
Confidence 45778999999986 47899999999999999999999996 7999999999999999999999999998653 689
Q ss_pred EEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhhhh
Q 024738 213 ALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYIER 260 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 260 (263)
||+||||+++++.||+|++| ++|++++.|+++++.+........|+..
T Consensus 786 VIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l~~ 839 (842)
T 2vf7_A 786 VIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRA 839 (842)
T ss_dssp EEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHHHH
T ss_pred EEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHHHH
Confidence 99999999999889999999 7999999999999987644445556543
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.9e-36 Score=304.04 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..++++.+||.. .+++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..+++.|+++.++ |.||
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TV 901 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTV 901 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 4567899999987 789999999999999999999999875 999999999999999999999999998653 6899
Q ss_pred EEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYI 258 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 258 (263)
|+||||+++++.||+|++| ++|++++.|+++++.+........|+
T Consensus 902 IvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~l 952 (972)
T 2r6f_A 902 LVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952 (972)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHHH
T ss_pred EEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHHH
Confidence 9999999998889999999 79999999999998764333333343
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=4.9e-36 Score=301.93 Aligned_cols=119 Identities=27% Similarity=0.392 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..++++.+||.. .+++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..+++.|++++++ |.||
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TV 919 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK--GNTV 919 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 3567899999987 789999999999999999999999875 999999999999999999999999998653 6899
Q ss_pred EEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYI 258 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 258 (263)
|+||||+++++.||++++| ++|++++.|+++++.+........|+
T Consensus 920 IvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~~l 970 (993)
T 2ygr_A 920 IVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFL 970 (993)
T ss_dssp EEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTTCHHHHHH
T ss_pred EEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCHHHHHHHH
Confidence 9999999998889999999 68999999999998765333334444
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-40 Score=311.78 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=156.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-E-EEEcC----ceEEE
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-H-VYVKR----PKSFV 104 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~-I~~~~----~~~~v 104 (263)
.++++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++++ .++|+
T Consensus 116 ~~mi~~~nl~~~y~-----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~v 184 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTV 184 (460)
T ss_dssp CTHHHHHHHHHHHH-----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSC
T ss_pred cchhhhhhhhehhh-----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeee
Confidence 35788888887762 79999999999999999999999999999999999999 9 99865 58899
Q ss_pred ecCCCCcccc--cCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH--HhhCCCE
Q 024738 105 FQNPDHQVVM--PTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA--LAEACKV 179 (263)
Q Consensus 105 ~q~~~~~~~~--~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra--l~~~p~l 179 (263)
||+....... .++.+|+ ++... .+.. ..+++.++++.+|+++..+ +.+|||||||||+|||| |+.+|++
T Consensus 185 pq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 185 PGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp SSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCccc
Confidence 9987432211 2778777 65331 1111 1123456788889987765 88999999999999999 9999999
Q ss_pred ----EEEeC-CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc------hh-hcCCE-----EEEEe-CCEEEEec
Q 024738 180 ----LLLDE-LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE------EL-EYADG-----AFYME-DGKIVMQA 241 (263)
Q Consensus 180 ----lllDE-Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~------~~-~~~d~-----v~~l~-~G~i~~~g 241 (263)
||||| ||++||+. +..+.++++++ +.|+|+|||+.+ ++ .+||+ |++|+ +|+++ .+
T Consensus 259 ~~sGLlLDEpPts~LD~~-~~~l~~l~~~~-----~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g 331 (460)
T 2npi_A 259 RRSGCIVDTPSISQLDEN-LAELHHIIEKL-----NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AV 331 (460)
T ss_dssp HHSCEEEECCCGGGSCSS-CHHHHHHHHHT-----TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CC
T ss_pred CcceEEEeCCcccccChh-HHHHHHHHHHh-----CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-EC
Confidence 99999 99999999 66666665543 468999999988 65 57999 99999 99999 99
Q ss_pred ChhhHHh
Q 024738 242 DGVSILN 248 (263)
Q Consensus 242 ~~~~~~~ 248 (263)
+++++..
T Consensus 332 ~~~~~~~ 338 (460)
T 2npi_A 332 DDVYKRS 338 (460)
T ss_dssp CHHHHHH
T ss_pred CHHHHhh
Confidence 9887744
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=5.8e-34 Score=264.71 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE----
Q 024738 159 LSGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM---- 232 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l---- 232 (263)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. + |.|||+|||+++.+..||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~--~~~vi~itH~~~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D--TRQVLVVTHLAQIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T--TSEEEEECSCHHHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C--CCEEEEEeCcHHHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999985 2 57999999999888889999999
Q ss_pred eCCEEEEec
Q 024738 233 EDGKIVMQA 241 (263)
Q Consensus 233 ~~G~i~~~g 241 (263)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999987654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=100.00 E-value=2e-32 Score=251.90 Aligned_cols=85 Identities=25% Similarity=0.349 Sum_probs=78.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 153 QRPVQTLSGGQKQRVAIAGALA------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
++++.+|||||||||+|||||+ .+|++|||||||+|||+..+..+++.|+++.+ .|.|||+||||++.+..|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~--~g~tvi~itH~~~~~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER--LNKVIVFITHDREFSEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG--SSSEEEEEESCHHHHTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEecchHHHHhC
Confidence 5688899999999999999999 79999999999999999999999999999864 368999999999987789
Q ss_pred CEEEEEeCCEEEE
Q 024738 227 DGAFYMEDGKIVM 239 (263)
Q Consensus 227 d~v~~l~~G~i~~ 239 (263)
|++++|++|++++
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999875
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=2.8e-33 Score=231.11 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=108.2
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCCcccccCHHHHHHhhccCCCCChH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~ 133 (263)
|+||++++||+++|+||||||||||+|++.+- ...+.. ..++++|++........+.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~----------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISSDFCRGLMSDDENDQTVTGAAFDVLH----------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHH-----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEccHHHHHHhcCcccchhhHHHHHHHHH-----------
Confidence 68999999999999999999999999986542 222221 23567776543222112222211
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHH
Q 024738 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES----------------DQFGV 197 (263)
Q Consensus 134 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~----------------~~~~l 197 (263)
... ......+.....+. ....|+|||||++||||++.+|++|+|||||++||+. .+..+
T Consensus 64 ---~~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l 138 (171)
T 4gp7_A 64 ---YIV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM 138 (171)
T ss_dssp ---HHH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH
T ss_pred ---HHH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh
Confidence 111 22233466554443 3456999999999999999999999999999999999 55888
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchhhcCCEE
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEELEYADGA 229 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v 229 (263)
.+.|+++.++ |.|+|++|||++++..++++
T Consensus 139 ~~~l~~l~~~--g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 139 KKSIKGLQRE--GFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHSTTHHHH--TCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhHHhc--CCcEEEEeCCHHHhhhhhhc
Confidence 8888887543 68999999999998765543
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=5.6e-35 Score=249.40 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=98.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE----------cCceEEEecCCCCcc--cccCHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----------KRPKSFVFQNPDHQV--VMPTVE 118 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~----------~~~~~~v~q~~~~~~--~~~tv~ 118 (263)
..+|+|+ ++|++++|+||||||||||+|+|+|+ +|++|+|.. ...++|+||++.... +..++.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~ 87 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH 87 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence 3589996 89999999999999999999999999 999999854 124788888651111 100111
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 024738 119 ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198 (263)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~ 198 (263)
+.+ .. ... .+++.++++. ++ |||||++|||||+.+|++|||||||++ ++..++
T Consensus 88 ~~~----~~-~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~ 140 (208)
T 3b85_A 88 DAL----RD-MVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMK 140 (208)
T ss_dssp HHH----TT-TSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHH
T ss_pred HHH----HH-hcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHH
Confidence 111 00 011 1234556655 43 999999999999999999999999999 888899
Q ss_pred HHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 199 ~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
+.|+++ + .|+||| +|||+++++. ....++|.
T Consensus 141 ~~l~~l-~--~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 141 MFLTRL-G--FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHTTB-C--TTCEEE-EEEC---------------CC
T ss_pred HHHHHh-c--CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 999887 3 367999 9999987653 23345664
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.2e-29 Score=227.57 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=76.4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 151 YLQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 151 ~~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
..++++.+||+|||||++||+||+ .+|++|||||||++||+..+..+.+.|+++. + +.+||++||+.+.+..|
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~--~~~vi~~tH~~~~~~~~ 288 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K--HTQFIVITHNKIVMEAA 288 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T--TSEEEEECCCTTGGGGC
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--CCeEEEEECCHHHHhhC
Confidence 356678899999999999999997 5889999999999999999999999999873 2 57999999998767889
Q ss_pred CEE--EEEeCCEE-EEecChhh
Q 024738 227 DGA--FYMEDGKI-VMQADGVS 245 (263)
Q Consensus 227 d~v--~~l~~G~i-~~~g~~~~ 245 (263)
|++ ++|.+|.. +...+.++
T Consensus 289 d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 289 DLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp SEEEEEEESSSCEEEEECCC--
T ss_pred ceEEEEEEeCCEEEEEEEEcch
Confidence 987 88888754 33444443
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=4.8e-34 Score=256.39 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=130.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
+|+++||+|+|+ . ++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++. +
T Consensus 101 ~i~~~~vs~~y~-~-----~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~--l 164 (305)
T 2v9p_A 101 FFNYQNIELITF-I-----NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSH--F 164 (305)
T ss_dssp HHHHTTCCHHHH-H-----HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSG--G
T ss_pred eEEEEEEEEEcC-h-----hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccc--c
Confidence 589999999996 2 5999999999999999999999999999999999998 8999 356788764 2
Q ss_pred cccCHHH-HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 113 VMPTVEA-DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 113 ~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+..|+.+ |+.++.. .. . .+.+.++.+ +...++ +..|||||||| ||||+.+|+||| |++||+
T Consensus 165 f~~ti~~~ni~~~~~---~~-~----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 165 WLASLADTRAALVDD---AT-H----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GGGGGTTCSCEEEEE---EC-H----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred ccccHHHHhhccCcc---cc-H----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 3347776 7766421 11 1 344555554 544444 78999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
.++..+.. +||++..++.||+| +|++|++++.|+++++
T Consensus 227 ~~~~~i~~----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 227 QAEDRYLY----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp TTCGGGGG----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHHHH----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 98876641 18999888899999 9999999999999887
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.96 E-value=4.5e-32 Score=252.80 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=135.5
Q ss_pred cceeceeeEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----eEEEecC
Q 024738 52 PILRDCSFSVPSGQ--------------------LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----KSFVFQN 107 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge--------------------~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----~~~v~q~ 107 (263)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.+++. .++++|+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 58999999999999 99999999999999999999999999999988652 3789997
Q ss_pred CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChH--HHHHHHHHHHHhh----------
Q 024738 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG--QKQRVAIAGALAE---------- 175 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqRv~lAral~~---------- 175 (263)
+. +.. .++.++..++.. +.++.++++.+++.+.. ..+. ||+| |+||++||+||+.
T Consensus 117 ~~-~~~-ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 117 PN-IPN-VVFWDLPGIGST---------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp SS-CTT-EEEEECCCGGGS---------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cc-cCC-eeehHhhcccch---------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEe
Confidence 53 222 266665444321 12456788999987653 3333 9999 9999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC---CCcEEEEEccCcch--hh-cCCEEE-EEeCC
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLG----DS---GEVTALWVTHRLEE--LE-YADGAF-YMEDG 235 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~----~~---~~~tiiivtH~~~~--~~-~~d~v~-~l~~G 235 (263)
+|++++|||||+|||+..+.++++.++++.. +. ...+|+++||+++. ++ .||++. .|..|
T Consensus 184 kpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999852 11 23578899999886 64 688774 34443
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.95 E-value=4.3e-32 Score=230.18 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=115.3
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---------cCceEEEecCCCCcccccCHHHHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---------KRPKSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---------~~~~~~v~q~~~~~~~~~tv~~~~ 121 (263)
.++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+ ...++|+||++..+.. .++.+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~~~~~l 85 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ-LIDQGEL 85 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHH-HHHTTCE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHH-HHhcCCc
Confidence 468888 799999999999999999999999999998532222111 1347899998643221 1444443
Q ss_pred Hhhc------cCCCCChHHHHHHHHHH------HHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 122 AFGL------GNLNLTHDEVRSKVAKA------LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.... ..++....+.++++.+. ++.+|+....++++.+|| ||+.+|++++|||||+++
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 2111 11223344455555555 566677667778888888 999999999999999998
Q ss_pred ----CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe
Q 024738 190 ----DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME 233 (263)
Q Consensus 190 ----D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~ 233 (263)
|+..+..+.+.++++.++ .|.|+|+||||++++ ..||++++|.
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~-~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQ-GDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGG-GGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhh-ccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 788999999999998643 368999999999998 5799999984
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=1.9e-28 Score=204.05 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=100.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEE-------EcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVY-------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~-------~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
+++|+||||||||||+|+|+|++... .|... ....++|++|++. +.+++ +. .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-------~~~~~-~~--~~~~~------ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-------GKKKI-FS--SKFFT------ 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-------CCEEE-EE--ETTCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-------HHHHH-HH--hhcCC------
Confidence 68999999999999999999997522 33221 1235788888651 11111 11 00110
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA-----LAEACKVLLLDE--LTTFLDESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra-----l~~~p~llllDE--Pts~LD~~~~~~l~~~l~~l~~~~~~ 210 (263)
-....++++.+||||||||++||+| ++.+|++||||| ||++||+..++.+.+.+.+ .+
T Consensus 66 ----------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-----~~ 130 (178)
T 1ye8_A 66 ----------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-----PN 130 (178)
T ss_dssp ----------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-----TT
T ss_pred ----------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-----CC
Confidence 0145778899999999999999996 999999999999 9999999999988888764 24
Q ss_pred cEEEEEcc---Ccchhh-cCCEEEEEeCCEEEE
Q 024738 211 VTALWVTH---RLEELE-YADGAFYMEDGKIVM 239 (263)
Q Consensus 211 ~tiiivtH---~~~~~~-~~d~v~~l~~G~i~~ 239 (263)
.|+|++|| |.+++. +|++ .+|++++
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 67888885 777774 6887 4566554
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.94 E-value=3.9e-29 Score=234.97 Aligned_cols=187 Identities=16% Similarity=0.069 Sum_probs=145.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
++++++|+++.|+.+ ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+.
T Consensus 130 ~~l~~~~v~~~~~tg----~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~ 204 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG----VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIEN 204 (438)
T ss_dssp CTTTSCCCCSBCCCS----CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHT
T ss_pred CceEEeccceecCCC----ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHh
Confidence 468999999999732 3599999 999999999999999999999999999999999999988642
Q ss_pred ----------eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 101 ----------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 101 ----------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
++|++|+........++.+|+.+...... . ..-.....++ .+..||+|| ||++||
T Consensus 205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~-----------~--~~~~v~~~ld-~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR-----------D--RGQHVLLIMD-SLTRYAMAQ-REIALA 269 (438)
T ss_dssp TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH-----------T--TTCEEEEEEE-CHHHHHHHH-HHHHHH
T ss_pred hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH-----------h--CCCCHHHHHH-hHHHHHHHH-HHHHHH
Confidence 58999863322212267777665421100 0 0001112222 267899999 999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCCc-----EEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD--SGEV-----TALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~--~~~~-----tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
+.+|++ |+|||+..+..+.+++.++.+. ..|. ||+++|||++ ..+||++++|.+|+++.++++
T Consensus 270 ---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 270 ---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRL 339 (438)
T ss_dssp ---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHH
T ss_pred ---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCH
Confidence 889988 9999999999999999987542 2364 9999999999 668999999999999999988
Q ss_pred hhHHh
Q 024738 244 VSILN 248 (263)
Q Consensus 244 ~~~~~ 248 (263)
.++..
T Consensus 340 ~~~~~ 344 (438)
T 2dpy_A 340 AEAGH 344 (438)
T ss_dssp HHTTC
T ss_pred HHccC
Confidence 77643
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=4.5e-26 Score=228.00 Aligned_cols=106 Identities=27% Similarity=0.347 Sum_probs=97.8
Q ss_pred HHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 142 ALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 142 ~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.+..+||... +++++.+|||||+|||+||++|+.+| .+|||||||++||+...+++++.|+++.+ .|.|||+|||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~--~G~TVIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR--GGNSLFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT--TTCEEEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH--cCCEEEEEcC
Confidence 5788999865 89999999999999999999999999 59999999999999999999999999864 3689999999
Q ss_pred CcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 219 RLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 219 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
|++++..||+|++| ++|++++.|+++++.+.
T Consensus 440 dl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 440 DLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp CHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred CHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 99988889999999 79999999999998764
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=1.6e-28 Score=220.58 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=126.6
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCC-Cccc
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPD-HQVV 113 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~-~~~~ 113 (263)
++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++. ..+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~- 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA- 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH-
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH-
Confidence 4678999999999999999999999999999999999999999843 3789999875 332
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDE 191 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~ 191 (263)
..++.+++.++... +.. ..+++.+|+.+..++++.+|| +||++||||++.+|+ +|+|| ||+|||+
T Consensus 169 ~~~v~e~l~~~~~~-~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~ 235 (302)
T 3b9q_A 169 ATVLSKAVKRGKEE-GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 235 (302)
T ss_dssp HHHHHHHHHHHHHT-TCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHHHHHHc-CCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCH
Confidence 23888998765321 111 124667788777778888999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccC---------cchh-hcCCEEEEEeCCEE
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHR---------LEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~---------~~~~-~~~d~v~~l~~G~i 237 (263)
..+. +++.+. .|.|+|++||. ++.+ ...+.|.++..|+.
T Consensus 236 ~~~~------~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 236 LPQA------REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHH------HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 8652 333322 36899999993 3333 25789999999974
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.93 E-value=7.1e-25 Score=199.41 Aligned_cols=80 Identities=31% Similarity=0.432 Sum_probs=70.9
Q ss_pred cCCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 152 LQRPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 152 ~~~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.++++.+||||||| |+++|+||+.+|++|||||||++||+..+..+.+.|+++..+ +.|||+||||.+....
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~~vi~~sH~~~~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEELKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG--SSEEEEEESCGGGGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHHh
Confidence 45788999999999 667778888899999999999999999999999999998543 5799999999776678
Q ss_pred CCEEEEEe
Q 024738 226 ADGAFYME 233 (263)
Q Consensus 226 ~d~v~~l~ 233 (263)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999985
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.93 E-value=2.3e-29 Score=226.96 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=135.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFS-----------------------VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~-----------------------i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..|+++||++.|. +++++++|. +++|+++||+||||||||||+++|+|++
T Consensus 42 ~~i~~~~v~~~y~-------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 42 EQIDLLEVEEVYL-------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeehhhhhh-------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3699999999994 467777764 8999999999999999999999999999
Q ss_pred CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 89 KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 89 ~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
+|+.|. ..+++++|++... ..|+.+|+.+.. ..+.......+.+.++++.++ ....+.++.+|||||+||++
T Consensus 115 ~~~~G~----~~v~~v~qd~~~~--~~t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~ 186 (312)
T 3aez_A 115 ARWDHH----PRVDLVTTDGFLY--PNAELQRRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIP 186 (312)
T ss_dssp HTSTTC----CCEEEEEGGGGBC--CHHHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEE
T ss_pred cccCCC----CeEEEEecCccCC--cccHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhh
Confidence 998775 5689999987432 228888876531 123322222456677888887 55556778899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h-cCCEEEEEeCCE
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E-YADGAFYMEDGK 236 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~-~~d~v~~l~~G~ 236 (263)
+|+|++.+|++||||||+..+|+.. ..+.++ -+ ..|+++|+.+.. + .++|.+.+.+++
T Consensus 187 ~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~----~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 187 GAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL----FD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG----CS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred hHHHhccCCCEEEECCccccCCcch-----HHHHHh----cC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998521 112222 23 458888888764 3 577776666653
No 79
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.92 E-value=1.8e-27 Score=217.53 Aligned_cols=197 Identities=13% Similarity=0.052 Sum_probs=133.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEE-EecCCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSF-VFQNPDH 110 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~-v~q~~~~ 110 (263)
++++++++++.|+.+ ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+..+. +.+...
T Consensus 44 ~~i~~~~l~~~~~tg----~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~- 117 (347)
T 2obl_A 44 DPLLRQVIDQPFILG----VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA- 117 (347)
T ss_dssp CSTTCCCCCSEECCS----CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT-
T ss_pred CCeeecccceecCCC----CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH-
Confidence 368999999999732 3599999 999999999999999999999999999999999998877542100 000000
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHH------HHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKV------AKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
. ......++..+.....+.+........ .+.+...+-. -.+-+.+..||+|| ||+++| +.+|++
T Consensus 118 ~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~---- 188 (347)
T 2obl_A 118 L-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV---- 188 (347)
T ss_dssp T-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC----
T ss_pred h-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc----
Confidence 0 000000000000011111111100001 1111111111 00114678999999 999999 688887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCc-----EEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEV-----TALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~-----tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|+|||+..+..+.+++.++.+.++|. ||+++|||++ ..+||++++|.+|+++.+++++++
T Consensus 189 --t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 --RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 99999999999999999875312467 8999999999 557999999999999999988765
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.92 E-value=3.2e-26 Score=219.61 Aligned_cols=171 Identities=9% Similarity=0.091 Sum_probs=131.7
Q ss_pred eEEEEeEEEEECCCccccccceece-eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDC-SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.++++++++.|+. |+.+ +..|++|++++|+||||||||||+++++|+..|. |+ ..+.+.+|++..
T Consensus 257 ~~~~~~l~~g~~~--------ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----~vi~~~~ee~~~- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVR--------LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----RAILFAYEESRA- 322 (525)
T ss_dssp CCCCCEECCSCHH--------HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----CEEEEESSSCHH-
T ss_pred ccccceeecChHH--------HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----CEEEEEEeCCHH-
Confidence 4566777655532 3332 4599999999999999999999999999998875 53 113466776521
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
.+..+.. ..+++.. + +...|+....+.++.+||+||+||+++|+++..+|++||+| ||++||.
T Consensus 323 ----~l~~~~~----~~g~~~~-------~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~ 385 (525)
T 1tf7_A 323 ----QLLRNAY----SWGMDFE-------E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALAR 385 (525)
T ss_dssp ----HHHHHHH----TTSCCHH-------H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTS
T ss_pred ----HHHHHHH----HcCCCHH-------H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHh
Confidence 2333321 1233211 1 33467777788899999999999999999999999999999 9999999
Q ss_pred H-----HHHHHHHHHHHHHhcCCCcEEEEEccCc----------chhh-cCCEEEEEeCCE
Q 024738 192 S-----DQFGVIEAVKNLLGDSGEVTALWVTHRL----------EELE-YADGAFYMEDGK 236 (263)
Q Consensus 192 ~-----~~~~l~~~l~~l~~~~~~~tiiivtH~~----------~~~~-~~d~v~~l~~G~ 236 (263)
. .+..+.++++.+.+ .|+|+|++||+. ..+. .||+|++|++|+
T Consensus 386 ~~~~~~~~~~i~~ll~~l~~--~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 386 GVSNNAFRQFVIGVTGYAKQ--EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hCChHHHHHHHHHHHHHHHh--CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9 99999999988754 378999999998 6664 699999999886
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=5.9e-30 Score=219.25 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=92.9
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-------------CceEEEecCCCCcccccC-H
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------RPKSFVFQNPDHQVVMPT-V 117 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-------------~~~~~v~q~~~~~~~~~t-v 117 (263)
..|+||||+|++|++++|+||||||||||+|+|+|++ | |+|.+. ..++|+||++..+... + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDK-LKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHH-HHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHh-hhc
Confidence 4799999999999999999999999999999999998 6 999871 2357778765321110 0 0
Q ss_pred HHHHHhh---ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH-----HHHHhhCCCEEEEeCCCCCC
Q 024738 118 EADVAFG---LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI-----AGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 118 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l-----Aral~~~p~llllDEPts~L 189 (263)
.+++.++ ...++.. ...+.++++...+. .++ .+|||||+||++| ||+|+.+|++++|||||+++
T Consensus 87 ~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred cchhhhhhcccccCCCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 0111110 0111111 12345566654332 222 5799999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 024738 190 DESDQFGVIEAVKNLLG 206 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~ 206 (263)
|..+...+.+.+.+...
T Consensus 159 d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99988888888887643
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=5.1e-25 Score=201.96 Aligned_cols=86 Identities=23% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCCCC-CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 153 QRPVQ-TLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 153 ~~~~~-~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 34456 79999999999999999 8999999999999999999999999998762 599999994 44
Q ss_pred hhcCCEEEEEeCCEEEEecChhhH
Q 024738 223 LEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 223 ~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=4.3e-27 Score=215.68 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=126.8
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCC-Ccccc
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPD-HQVVM 114 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~-~~~~~ 114 (263)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++. ..+ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p-~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA-A 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH-H
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh-h
Confidence 578999999999999999999999999999999999999998843 3789999864 332 2
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDES 192 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~ 192 (263)
.++.+++.++... +.. ..+++.+|+.+..++++.+|| +||++||||++.+|+ +|+|| ||+|||+.
T Consensus 227 ~tv~e~l~~~~~~-~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKEE-GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHT-TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHhC-CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 3888998775321 111 124566788777777888999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccC---------cchh-hcCCEEEEEeCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTHR---------LEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH~---------~~~~-~~~d~v~~l~~G~i 237 (263)
.+. +++.+. .+.|+|++||. +..+ .....|.++..|+.
T Consensus 294 ~~~------~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 294 PQA------REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHH------HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHH------HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 653 233222 36899999993 3333 25789999999864
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.92 E-value=4.8e-26 Score=232.44 Aligned_cols=167 Identities=22% Similarity=0.157 Sum_probs=121.3
Q ss_pred ceEEEEe-----EEEEECCCccccccceeceeeEEeC-------CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 32 VAIECSN-----LNYSITKKQRKLVPILRDCSFSVPS-------GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 32 ~~l~~~n-----l~~~y~~~~~~~~~iL~~vsl~i~~-------Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.+|+++| |++.|.+. ..+++|++|++++ |++++|+||||||||||||++ |++.+ ..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~----~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------~a 816 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD----DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------MA 816 (1022)
T ss_dssp CCEEEEEECCCC------CC----CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------HH
T ss_pred ceEEEEeccccEEEEEecCC----ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------Hh
Confidence 4799999 99999322 2699999999987 999999999999999999999 99865 23
Q ss_pred ceE-EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKS-FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
++| ||||++. .+ ++.+++.. ++|+.+...+..+++|++|++ +++|++++.+|+
T Consensus 817 qiG~~Vpq~~~---~l-~v~d~I~~---------------------rig~~d~~~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RL-TPIDRVFT---------------------RLGASDRIMSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TTTCCEESSEE---EE-CCCSBEEE---------------------ECC---------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred heeEEeccCcC---CC-CHHHHHHH---------------------HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 455 9999752 11 44443311 123333333445678888775 999999999999
Q ss_pred EEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE
Q 024738 179 VLLLDELTTFLDESDQ-FGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV 238 (263)
Q Consensus 179 llllDEPts~LD~~~~-~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~ 238 (263)
++|||||++|+|+... ..++.+|..++++ .|.++|++||+.+++. .||++.++ +|++.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~-~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHT-SCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999874 5578888887643 3689999999999985 69998876 47776
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=8.5e-27 Score=211.70 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=104.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.+++..-+..+ ..++.+.+. .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~---------~~~~~i~~~------~- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK---------HHKNYTQLF------F- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS---------SCSSEEEEE------C-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc---------cchhEEEEE------e-
Confidence 799999999999999999999999999999999999999999999864211000 000000000 0
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
| |||+||++|||||..+|++||+||||+. ++.+.|+.+.. ++.|
T Consensus 224 --------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~--g~~t 267 (330)
T 2pt7_A 224 --------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS--GHKG 267 (330)
T ss_dssp --------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT--TCCC
T ss_pred --------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc--CCCE
Confidence 0 8999999999999999999999999982 35667776642 2457
Q ss_pred EEEEccCcchhhcCCEEEEEeCCE
Q 024738 213 ALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
+|+++|+.+....|||+++|.+|.
T Consensus 268 vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 268 TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEcccHHHHHhhhheehhcCC
Confidence 999999999667899999998885
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=3.1e-25 Score=223.55 Aligned_cols=160 Identities=26% Similarity=0.287 Sum_probs=126.2
Q ss_pred HHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh------H---HHHHHHHHHHHHcCCCc
Q 024738 80 LLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH------D---EVRSKVAKALDAVGMSN 150 (263)
Q Consensus 80 Llk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~------~---~~~~~~~~~l~~~~l~~ 150 (263)
...|..+.++|..|+|.+++.- +.+ +...++.+++.+.. ...+.. . +..++..+.+..+||..
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~--i~~-----~~~~~v~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 455 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLN--IHE-----FTELSISEELEFLK-NLNLTEREREIVGELLKEIEKRLEFLVDVGLEY 455 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEE--HHH-----HHHSBHHHHHHHHH-SCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTT
T ss_pred chhcccccCChHhcCcEECCcc--HHH-----hhhCCHHHHHHHHH-hccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcc
Confidence 4456667788999999998742 111 11127778776632 221111 0 11123446788899985
Q ss_pred c-cCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 151 Y-LQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 151 ~-~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
. +++++.+|||||+|||+|||||+.+|+ +|||||||+|||+....++++.|+++.+ .|.|||+||||++.+..||
T Consensus 456 l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~--~G~TvivVtHd~~~~~~aD 533 (916)
T 3pih_A 456 LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD--LGNTVIVVEHDEEVIRNAD 533 (916)
T ss_dssp CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT--TTCEEEEECCCHHHHHTCS
T ss_pred ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCC
Confidence 4 789999999999999999999999887 9999999999999999999999999854 3789999999999887899
Q ss_pred EEEEE------eCCEEEEecChhhHHhh
Q 024738 228 GAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 228 ~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
+|++| ++|++++.|+++++++.
T Consensus 534 ~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 534 HIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp EEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred EEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 99999 89999999999998765
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.91 E-value=7.6e-25 Score=209.70 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEE
Q 024738 154 RPVQTL-SGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAF 230 (263)
Q Consensus 154 ~~~~~L-SgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~ 230 (263)
+++.+| ||||+|||+|||||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+..||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCHHHHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhCCEEE
Confidence 456778 999999999999999999 99999999999999999999999999864 479999999999888899999
Q ss_pred EEeCC
Q 024738 231 YMEDG 235 (263)
Q Consensus 231 ~l~~G 235 (263)
+|.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.91 E-value=7.9e-28 Score=230.79 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=115.5
Q ss_pred eEEEEeEEEEECCCccccccceeceee-EEeCCCEEEEECCCCCcHHHHHHH--HhCCCCCCceEEEEcCc---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSF-SVPSGQLWMLLGPNGCGKSTLLKV--LAGLLKPTNGHVYVKRP--------- 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~--i~Gl~~p~~G~I~~~~~--------- 100 (263)
+++.+++.+.+++ .++|+++|| .|++|++++|+||||||||||+++ ++|+.+|++|.|++.+.
T Consensus 12 ~~~~~~~~~~~~g-----~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~ 86 (525)
T 1tf7_A 12 NSEHQAIAKMRTM-----IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKN 86 (525)
T ss_dssp --CCSSCCEECCC-----CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred CccccccccccCC-----chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHH
Confidence 4566666554433 369999999 999999999999999999999999 78999999999998652
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+||++|++... .++.+ ..... . +...++++.+++.+.+++.+.+||+ .+|
T Consensus 87 ~~~~g~~~q~~~~~-------~~l~~-~~~~~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~-------------g~~ 139 (525)
T 1tf7_A 87 ARSFGWDLAKLVDE-------GKLFI-LDASP-D-----PEGQEVVGGFDLSALIERINYAIQK-------------YRA 139 (525)
T ss_dssp HGGGTCCHHHHHHT-------TSEEE-EECCC-C-----SSCCSCCSSHHHHHHHHHHHHHHHH-------------HTC
T ss_pred HHHcCCChHHhhcc-------CcEEE-EecCc-c-----cchhhhhcccCHHHHHHHHHHHHHH-------------cCC
Confidence 45555543210 00000 00000 0 0000122222333333333444444 468
Q ss_pred CEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh---------h-cCCEEEEEeC
Q 024738 178 KVLLLDELTT-----FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL---------E-YADGAFYMED 234 (263)
Q Consensus 178 ~llllDEPts-----~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~---------~-~~d~v~~l~~ 234 (263)
+++++||||+ +||+..++.++++++++.+ .|+|||++||+++++ + +||+|++|++
T Consensus 140 ~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~--~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ--IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH--CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8999999998 4699999999999999865 378999999999874 4 4999999998
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.91 E-value=8.6e-26 Score=228.35 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=119.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHH--------hCCCCCCceEEEEcCceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------AGLLKPTNGHVYVKRPKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i--------~Gl~~p~~G~I~~~~~~~~v 104 (263)
.|++++...-+-....+...+++|++|++++|++++|+||||||||||||++ .|..-|.++.. ++.+
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~~ 705 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSIV 705 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EECC
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chHH
Confidence 5777776544322111123689999999999999999999999999999999 56544443321 0100
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEE
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLL 182 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llll 182 (263)
. +++.++|+.+ .....+|+||+++..+|+++ +.+|+++||
T Consensus 706 d-----------------------------------~i~~~ig~~d---~l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 706 D-----------------------------------CILARVGAGD---SQLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp S-----------------------------------EEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred H-----------------------------------HHHHhcCchh---hHHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 0 0111222222 22345788888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 183 DELTTFLDESDQFGV-IEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 183 DEPts~LD~~~~~~l-~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
||||+|+|+.....+ +.++..+.++ .|+++|++||+.+...+||++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATK-IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999988888 6666666542 36899999999887889999999999999887766554
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.91 E-value=1.6e-24 Score=192.71 Aligned_cols=173 Identities=14% Similarity=0.163 Sum_probs=114.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEEc-Cce---------EEEecCCCCcccccCHHHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVYVK-RPK---------SFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~-~~~---------~~v~q~~~~~~~~~tv~~~ 120 (263)
++|+++++.|++|++++|+||||||||||++.|+|...|++| .|.+. ... ..+++... . ...++
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~-~~~~~ 97 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----L-RQSDS 97 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----G-GGCHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----h-hhccc
Confidence 589999999999999999999999999999999999999877 66432 110 00111100 0 00011
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-H
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ-KQRVAIAGALAEACKVLLLDELTT---F---LDE-S 192 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqRv~lAral~~~p~llllDEPts---~---LD~-~ 192 (263)
+..+ ....++..+.+.++++..++ .+...+..+|.++ +||+. |+++..+|++||+||||+ + +|. .
T Consensus 98 l~~~----~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 98 LKRE----IIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp HHHH----HHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred cccC----CCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 1110 00111222333334333233 2334456789999 66666 999999999999999999 5 555 6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccCc--c--------------------hh-hcCCEEEEEeCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTHRL--E--------------------EL-EYADGAFYMEDGKI 237 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH~~--~--------------------~~-~~~d~v~~l~~G~i 237 (263)
....+.+.|++++++ .|+|||++||+. + .+ ..||+|++|++|+.
T Consensus 171 ~~~~i~~~L~~la~~-~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKS-TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHH-HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHH-hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 678899999998764 368999999995 4 55 47999999999875
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=6.8e-24 Score=213.32 Aligned_cols=130 Identities=28% Similarity=0.391 Sum_probs=112.0
Q ss_pred CHHHHHHhhccCCCCCh----------HHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEE
Q 024738 116 TVEADVAFGLGNLNLTH----------DEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLL 182 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llll 182 (263)
||.+++.| +.+..++. +++.+++ +.+..+||..+ +++++.+|||||+|||+||++|..+| ++|||
T Consensus 453 tV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llIL 530 (972)
T 2r6f_A 453 SVTEALAF-FDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVL 530 (972)
T ss_dssp BHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred CHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 78888887 44444444 2344555 46899999864 79999999999999999999999985 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
||||++||+...+++++.|+++.+ .|.|||+||||++++..||+|++| ++|++++.|+++++.+.
T Consensus 531 DEPTagLdp~~~~~L~~~L~~Lr~--~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 531 DEPSIGLHQRDNDRLIATLKSMRD--LGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp ECTTTTCCGGGHHHHHHHHHHHHT--TTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred eCcccCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 999999999999999999999854 478999999999998889999999 79999999999988763
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=1.1e-23 Score=212.36 Aligned_cols=130 Identities=29% Similarity=0.371 Sum_probs=112.6
Q ss_pred CHHHHHHhhccCCCCCh----------HHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhC--CCEEEE
Q 024738 116 TVEADVAFGLGNLNLTH----------DEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEA--CKVLLL 182 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~llll 182 (263)
||.+++.| +.+.+++. +++.+++ +.+..+||..+ +++++.+|||||+|||+||++|..+ |++|||
T Consensus 470 tV~e~l~f-~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llIL 547 (993)
T 2ygr_A 470 SIADCADF-LNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVL 547 (993)
T ss_dssp HHHHHHHT-TTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred CHHHHHHH-HHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 78888888 55555554 3344554 45888999865 7999999999999999999999998 599999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
||||++||+...+.+++.|+++.+ .|.|||+||||++++..||+|++| ++|++++.|+++++.+.
T Consensus 548 DEPTagLdp~~~~~L~~~L~~Lr~--~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 548 DEPSIGLHQRDNRRLIETLTRLRD--LGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred eCcccCCCHHHHHHHHHHHHHHHH--cCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 999999999999999999999864 378999999999998889999999 79999999999998764
No 93
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.90 E-value=1.7e-26 Score=204.23 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=91.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 135 (263)
.++|+||||||||||+|+|+|+..|++|+|.+++ .+++++|++.....+ |+.+|+.++....+.. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~l-tv~d~~~~g~~~~~~~---~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL-TVIDTPGFGDQINNEN---C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEE-EEECCCC--CCSBCTT---C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCc-eEEechhhhhhcccHH---H
Confidence 4899999999999999999999999999998854 479999987644333 8888877764322211 1
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 136 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
.+.+.+.+. ..+.++.+.+|||||+||+++|||++. ++++|||+++||+... +.++.+.+ . .+||+
T Consensus 80 ~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~--~-~~vI~ 145 (270)
T 3sop_A 80 WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSK--V-VNIIP 145 (270)
T ss_dssp SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHT--T-SEEEE
T ss_pred HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHh--c-CcEEE
Confidence 122223322 334556678999999999999999876 9999999999999873 45555543 2 58888
Q ss_pred EccCcchh
Q 024738 216 VTHRLEEL 223 (263)
Q Consensus 216 vtH~~~~~ 223 (263)
+.|..+.+
T Consensus 146 Vi~K~D~l 153 (270)
T 3sop_A 146 VIAKADTM 153 (270)
T ss_dssp EETTGGGS
T ss_pred EEeccccC
Confidence 88877643
No 94
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.89 E-value=1.1e-24 Score=219.69 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred eEEEEeEEEEECCC--ccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcCceEEEecCCC
Q 024738 33 AIECSNLNYSITKK--QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 33 ~l~~~nl~~~y~~~--~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~~~~~v~q~~~ 109 (263)
.|++++...-+=.. ..+...|++|+||++++|++++|+||||||||||||+++++... ..| .++|+...
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~ 711 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEA 711 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhh
Confidence 56776654432000 00124689999999999999999999999999999999864211 001 12222110
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.. .+ +.+++..+|+.+.+.+..+.+|+||+|++.|+++ +.+|+++||||||+||
T Consensus 712 ---~i-~~---------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 712 ---TI-GI---------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGT 765 (918)
T ss_dssp ---EE-EC---------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTS
T ss_pred ---hh-hH---------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 00 00 0012233444445556678999999999999999 8999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHhcCCCcEEEEEccCcchhhcCCE
Q 024738 190 DESDQFGVI-EAVKNLLGDSGEVTALWVTHRLEELEYADG 228 (263)
Q Consensus 190 D~~~~~~l~-~~l~~l~~~~~~~tiiivtH~~~~~~~~d~ 228 (263)
|+.....+. .++..++++ .|+|+|++||+.+.+++||+
T Consensus 766 D~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 766 STHDGIAIAYATLEYFIRD-VKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHHHHHHHhh
Confidence 999998887 666666543 46899999999988665443
No 95
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.88 E-value=2.6e-22 Score=187.83 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=68.3
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEE
Q 024738 156 VQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~ 231 (263)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.. .+.++|++||+...+..||++++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEEE
Confidence 4569999999999999999 58999999999999999999999999998743 25799999999777788999999
Q ss_pred Ee
Q 024738 232 ME 233 (263)
Q Consensus 232 l~ 233 (263)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=1e-24 Score=189.37 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=107.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cCceEEEecCCCCcccccCHHHHHHhhccC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KRPKSFVFQNPDHQVVMPTVEADVAFGLGN 127 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~ 127 (263)
.++|+|+||++++|+++||+||||||||||+|+|+|++ |.+.+ ...++|++|+. .+.. .++.+++.+....
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~-l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKV-LTAEQKAKALKGQ 85 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCC-CCHHHHHHHHTTC
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-Cccc-cCHhHhhhhhccC
Confidence 46999999999999999999999999999999999976 44433 34688999984 2222 3888887665433
Q ss_pred CCCChHH--HHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 128 LNLTHDE--VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 128 ~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
..+...+ ..+.+.+.++.+ ....+.++..||+||+||+++ ++++.+|+++|+|||....|.. +.++
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~- 153 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM- 153 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-
T ss_pred CCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh-
Confidence 3322111 123344455543 344566788999999999988 6888999999999999888764 2222
Q ss_pred hcCCCcEEEEEccCcchh-h-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 206 GDSGEVTALWVTHRLEEL-E-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~-~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+.+|+++||+...+ + .++++ ++|+ +.+++.+.
T Consensus 154 ---~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 154 ---FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp ---CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred ---cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 257999999974444 4 34444 6664 45555543
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.88 E-value=2.3e-24 Score=185.64 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=101.0
Q ss_pred eEEEEeEEEEECCCccccccceeceee--EEeCCCEEEEECCCCCcHHHHHHHHh--CCCCCCceEEEEcCc--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSF--SVPSGQLWMLLGPNGCGKSTLLKVLA--GLLKPTNGHVYVKRP-------- 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl--~i~~Ge~~~l~G~NGsGKSTLlk~i~--Gl~~p~~G~I~~~~~-------- 100 (263)
++++++++..+. .|+.+ + .|++|++++|+||||||||||+++|+ |+.++.+|.+++.+.
T Consensus 6 ~~~~~~i~tg~~--------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T 2ehv_A 6 YQPVRRVKSGIP--------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRR 76 (251)
T ss_dssp --CCCEECCSCT--------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred ccccceeecCCH--------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHH
Confidence 466667766553 34444 2 79999999999999999999999999 765666676665431
Q ss_pred ----eEEEecCCCCcccccCHHHHHHhh-ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 101 ----KSFVFQNPDHQVVMPTVEADVAFG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 101 ----~~~v~q~~~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
+++.+|+ ....+ .......... ... .. . .........+.++..+...+..-..
T Consensus 77 ~~~~~g~~~~~------------~~~~~~~~~~~~~~~~--~~~----~~---~-~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 77 EMASFGWDFEK------------YEKEGKIAIVDGVSSV--VGL----PS---E-EKFVLEDRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp HHHTTTCCHHH------------HHHTTSEEEEC-----------------------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCChHH------------HhhcCCEEEEEccccc--ccc----cc---c-cceeccCcccHHHHHHHHHHHHHhh
Confidence 1111111 00000 0000000000 000 00 0 0011122344556555555555678
Q ss_pred CCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcC-CEEEEEe
Q 024738 176 ACKVLLLDELTTFLD-----ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYA-DGAFYME 233 (263)
Q Consensus 176 ~p~llllDEPts~LD-----~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~-d~v~~l~ 233 (263)
+|+++++||||++|| +..++.+.++++.+.+ .|+|||++||+++.+ ..| |++++|+
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~--~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999999999998 6777778888888754 368999999999886 467 9999996
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.88 E-value=3.5e-24 Score=188.48 Aligned_cols=139 Identities=18% Similarity=0.241 Sum_probs=101.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcC-ceEEEecCCCCc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKR-PKSFVFQNPDHQ 111 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~-~~~~v~q~~~~~ 111 (263)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+ .+.|++|.+...
T Consensus 6 ~~l~~l~~~---------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP---------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI 74 (261)
T ss_dssp CCGGGSSCC---------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE
T ss_pred CChHHCCCH---------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee
Confidence 455666532 3899999 8999999999999999999999999999998 99998765 355555432100
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
. . . ..+|++. ..| |++||+||..+|++|++|||| |+
T Consensus 75 --v----------~------q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 --V----------N------Q-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp --E----------E------E-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred --e----------e------H-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 0 0 0 0233332 122 899999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.+...++ +. +. .|.+|+++||+.+....|||+++|.
T Consensus 111 ~~~~~~l---~~-~~--~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETAL---RA-AE--TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHH---HH-HH--TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHH---HH-Hc--cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 8865443 33 22 2679999999988656677765543
No 99
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.88 E-value=1.5e-22 Score=163.61 Aligned_cols=83 Identities=31% Similarity=0.443 Sum_probs=73.8
Q ss_pred cCCCCCCCChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 152 LQRPVQTLSGGQKQRVAIA------GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lA------ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.++++.+||||||||++|| |||+.+|+++||||||+|||+..+..+.+.|.++.++ |.|||++|||.+....
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG--SSEEEEEESCGGGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc--CCEEEEEEChHHHHHh
Confidence 4678999999999999876 8999999999999999999999999999999997543 5799999999965578
Q ss_pred CCEEEEE--eCCE
Q 024738 226 ADGAFYM--EDGK 236 (263)
Q Consensus 226 ~d~v~~l--~~G~ 236 (263)
||++++| .+|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 9999999 4554
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.86 E-value=4.6e-23 Score=205.02 Aligned_cols=146 Identities=22% Similarity=0.203 Sum_probs=103.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEc--CceEEEecCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVK--RPKSFVFQNPD 109 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~--~~~~~v~q~~~ 109 (263)
.|++++...-+-.. ....+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+.-. ..+++++|-
T Consensus 550 ~i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i-- 622 (765)
T 1ewq_A 550 RLQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGI-- 622 (765)
T ss_dssp SEEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEE--
T ss_pred cEEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHh--
Confidence 47777763322000 124689999999 99999999999999999999999874 677764211 123333331
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLLDEL-- 185 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llllDEP-- 185 (263)
+..+ ++.+|+. ..+|+||+|++.+|+++ +.+|+++|||||
T Consensus 623 -~~~~-~~~d~l~----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 623 -YTRI-GASDDLA----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp -EEEC-CC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred -hccC-CHHHHHH----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 0001 2333221 24689999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 186 -TTFLDESDQ-FGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 186 -ts~LD~~~~-~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
|++||+.+. ..+++.|.+ .|.|+|++||+.++...|
T Consensus 667 GTs~lD~~~~~~~i~~~L~~-----~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE-----RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-----HTCEEEEECCCHHHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh-----CCCEEEEEeCCHHHHHhh
Confidence 999999876 467777765 157999999998886654
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.86 E-value=3.9e-25 Score=186.89 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=114.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc-cccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV-VMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
.++|++++|+||||||||||+++|+|++.| .++|++|++.... ...++.++..+.+. .......+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYD---HPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTT---SGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCC---ChhhhhHHHH
Confidence 478999999999999999999999999876 5789999874321 12277777655321 1111123456
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcC
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQK----QRVAIAGALAEACKVLLLDELTTF-------LDESDQFGVIEAVKNLLGDS 208 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqk----qRv~lAral~~~p~llllDEPts~-------LD~~~~~~l~~~l~~l~~~~ 208 (263)
.++++.+++.+..++++.++|+||+ ||+++|++++.+|+++++||||++ ||+.....+.+.+.+...+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~- 149 (211)
T 3asz_A 71 LEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE- 149 (211)
T ss_dssp HHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH-
Confidence 6778888888777788999999974 788999999999999999999999 9999999999988875432
Q ss_pred CCcEEEEEccCc
Q 024738 209 GEVTALWVTHRL 220 (263)
Q Consensus 209 ~~~tiiivtH~~ 220 (263)
+|.|++.++|++
T Consensus 150 ~g~t~~~~~~~~ 161 (211)
T 3asz_A 150 RGRSLEGVVAQY 161 (211)
T ss_dssp SCCCHHHHHHHH
T ss_pred hCCCHHHHHHHH
Confidence 367899999985
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.85 E-value=7.5e-22 Score=167.54 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=110.8
Q ss_pred ccceeceee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH-hhccCC
Q 024738 51 VPILRDCSF-SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA-FGLGNL 128 (263)
Q Consensus 51 ~~iL~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~-~~~~~~ 128 (263)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+.+|.|.+. ..+.. ...+...+. ++....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~------~~~~~----~~~~~~~~~~~~~~~~ 78 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV------TTEES----RDSIIRQAKQFNWDFE 78 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE------ESSSC----HHHHHHHHHHTTCCCG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE------EcccC----HHHHHHHHHHhcchHH
Confidence 357899998 899999999999999999999999999887777766542 22110 001111111 111000
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHH
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFL--DESDQFGVIEAVKNL 204 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~L--D~~~~~~l~~~l~~l 204 (263)
...... ...+......++ ..+ .....|.++.++...+.+...+|+ ++++||||+.+ |+..+..+++.|+++
T Consensus 79 ~~~~~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~ 153 (235)
T 2w0m_A 79 EYIEKK-LIIIDALMKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRV 153 (235)
T ss_dssp GGBTTT-EEEEECCC-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHH
T ss_pred HHhhCC-EEEEeccccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHH
Confidence 000000 000000000001 111 113459999999988888888999 99999999888 999999999999998
Q ss_pred HhcCCCcEEEEEccCc--------chh-hcCCEEEEEeCC
Q 024738 205 LGDSGEVTALWVTHRL--------EEL-EYADGAFYMEDG 235 (263)
Q Consensus 205 ~~~~~~~tiiivtH~~--------~~~-~~~d~v~~l~~G 235 (263)
+++ .|+|||++||+. ..+ ..||++++|+..
T Consensus 154 ~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 154 LNK-WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHH-TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHh-CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 754 478999999999 346 479999999864
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.85 E-value=1.4e-21 Score=166.14 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=93.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
-|++|++++|+||||||||||+++|+|+..|..|.....+...|+..... + . .+.+.......++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~--~-~~~i~~~~~~~~~~~~------ 88 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---F--R-PERIREIAQNRGLDPD------ 88 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---C--C-HHHHHHHHHHTTSCHH------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---C--C-HHHHHHHHHHcCCCHH------
Confidence 79999999999999999999999999966553332222222223322211 0 0 0111111111122211
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHH-HHHHHHHHHhh-------CCCEEEEeCCCCCCCHH-------H-----HHHHHH
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQK-QRVAIAGALAE-------ACKVLLLDELTTFLDES-------D-----QFGVIE 199 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqk-qRv~lAral~~-------~p~llllDEPts~LD~~-------~-----~~~l~~ 199 (263)
.+.+.+.+ ...++.+++ +.+..+++++. +|+++++|||++++|+. . ...+++
T Consensus 89 -~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 89 -EVLKHIYV-------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 160 (231)
T ss_dssp -HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred -HHhhcEEE-------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHH
Confidence 12222211 122344443 33566666665 99999999999999984 1 236777
Q ss_pred HHHHHHhcCCCcEEEEEccCcch----hh-cCCEEEEEeCCE
Q 024738 200 AVKNLLGDSGEVTALWVTHRLEE----LE-YADGAFYMEDGK 236 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH~~~~----~~-~~d~v~~l~~G~ 236 (263)
.|.+++++ .|+|||++||.... +. .||++++|++|+
T Consensus 161 ~l~~~~~~-~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 161 DLHRLANL-YDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHH-HTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHH-CCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 78777654 36899999996554 64 699999998753
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.84 E-value=5.9e-24 Score=190.58 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=82.9
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEEc----------CceEEEe
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL-LKPTNGHVYVK----------RPKSFVF 105 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~----------~~~~~v~ 105 (263)
+||+++|+++ .++++++|+| +|+||||||||||+++|+|. ..|++| |.+. ..+++++
T Consensus 2 ~~l~~~~~~~-----~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK-----SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEI 69 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEE
T ss_pred CCCcceECCE-----EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEe
Confidence 4889999764 5999999998 99999999999999999998 888888 5432 2367888
Q ss_pred cCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
|.......+ ++.++..++.... ..+ ....+.+. +.+..++++.++|||||||+.+|||++ ++++|||
T Consensus 70 q~~~~~~~l-tv~Dt~g~~~~~~---~~e---~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 70 EERGVKLRL-TVVDTPGYGDAIN---CRD---CFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp C---CCEEE-EEEEEC-----------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred cCCCcccCc-chhhhhhhhhhcC---cHH---HHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecC
Confidence 865432222 5555443321110 000 00111111 122345677899999999999999885 9999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc
Q 024738 186 TTF-LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 186 ts~-LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
|++ ||+... +.++++.. ..+.++|+++||+.
T Consensus 137 t~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGGS
T ss_pred cccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCCC
Confidence 985 999874 55555543 33689999999974
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.84 E-value=7.5e-22 Score=165.60 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=102.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEEcC------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-----KPTNGHVYVKR------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~p~~G~I~~~~------~~ 101 (263)
+|+++|++|+|+. +++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|++.+.+ .+
T Consensus 3 ~l~~~~~~~~~~~------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 3 NLNYQQTHFVMSA------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp --------CEEEE------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred chhhhhhhheeec------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 5899999999963 47888 899999999999999999999999999998 88888875422 11
Q ss_pred EEEecCCCCccc---c---cCHHHHHHhhcc------------CCCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChH
Q 024738 102 SFVFQNPDHQVV---M---PTVEADVAFGLG------------NLNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGG 162 (263)
Q Consensus 102 ~~v~q~~~~~~~---~---~tv~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG 162 (263)
. +.+.|..... . ......+...+. ............+.++++..++... ...++..+|+|
T Consensus 75 ~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 75 R-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp E-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred E-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCch
Confidence 1 1222211000 0 001111111100 0011111223345567777788753 35668899999
Q ss_pred HHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 163 QKQR-VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 163 qkqR-v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
|+|| +..+++++.+|+++++|||||++|..+..++++.|.++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 9999 8999999999999999999999999999999999998764
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.83 E-value=7.6e-24 Score=206.44 Aligned_cols=179 Identities=14% Similarity=0.169 Sum_probs=108.5
Q ss_pred eEEEEeEEEEECCCccccccceece----------eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC--
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDC----------SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR-- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~v----------sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~-- 99 (263)
.++++||++.|+.+. .++|+.+ +|+++. +||+|||||||||||++|+|+..| ++|.|++++
T Consensus 10 ~i~~~~l~~~~~~~~---r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 10 SVAENNLCSQYEEKV---RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLV 83 (608)
T ss_dssp ----------CHHHH---HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEE
T ss_pred hhhhhhhhHHHHHHH---HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEE
Confidence 588999999997531 2355544 366665 999999999999999999999988 799987643
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..... .++.+|+.++.. .++... ..+| ++
T Consensus 84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~~-~tv~e~i~~~~~------------------~~~~~~------~~~s---~~ 135 (608)
T 3szr_A 84 LKLKKLVNEDKWRGKVSYQDYEIEISDA-SEVEKEINKAQN------------------AIAGEG------MGIS---HE 135 (608)
T ss_dssp EEEEECSSSSCCEEEESCC---CCCCCH-HHHHTTHHHHHH------------------HHHCSS------SCCC---SC
T ss_pred EEEecCCccccceeEEeeecccccCCCH-HHHHHHHHHHHH------------------HhcCCc------cccc---hH
Confidence 36788887654332 377777655311 111100 0011 12
Q ss_pred HHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh--------hc-----C
Q 024738 166 RVAIAGALAEACKVLLLDEL------TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL--------EY-----A 226 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEP------ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~--------~~-----~ 226 (263)
++.++.+....|+++|+||| |+|||+..+..+.++++++..+..+.+++++||+++.+ .. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 22333344468999999999 99999999999999999976655678999999998732 11 3
Q ss_pred CEEEEEeCCEEEEecChhh
Q 024738 227 DGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 227 d~v~~l~~G~i~~~g~~~~ 245 (263)
..|+++.++.++..|+..+
T Consensus 216 rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp SEEEEEECGGGSSSSSTTC
T ss_pred ceEEEecchhhcCcccHHH
Confidence 5688888888777776543
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.83 E-value=9.8e-22 Score=196.40 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=100.3
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
..+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|. ++|+.... . ++.+.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~--------~vpa~~~~---i-~~~~~--------- 652 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--------YVPAQKVE---I-GPIDR--------- 652 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--------CBSSSEEE---E-CCCCE---------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc--------ccchhccc---c-eeHHH---------
Confidence 3689999999 99999999999999999999999997421 2221 22321100 0 00000
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcC
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV-IEAVKNLLGDS 208 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~~ 208 (263)
++..++..+.+....+.+|++|++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++
T Consensus 653 ------------i~~~~~~~d~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~- 718 (800)
T 1wb9_A 653 ------------IFTRVGAADDLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK- 718 (800)
T ss_dssp ------------EEEEEC-----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-
T ss_pred ------------HHhhCCHHHHHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc-
Confidence 000111111111223456777765 4445556899999999999999998877765 6777777542
Q ss_pred CCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 209 GEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 209 ~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
.|.++|++||+.+...+||++..+.+|++....
T Consensus 719 ~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 719 IKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp TCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred cCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 368999999999887778876666666665443
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.83 E-value=9.1e-21 Score=167.33 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=102.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE------cCceEEEecCCCCcccccCHHHHH-HhhccCCCCCh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------KRPKSFVFQNPDHQVVMPTVEADV-AFGLGNLNLTH 132 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~------~~~~~~v~q~~~~~~~~~tv~~~~-~~~~~~~~~~~ 132 (263)
-+++|++++|+||||||||||++.+++... .|.+.+ .+.+.|+..+... ..+...+ .++. ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~----~~~~~r~~~~g~---~~~~ 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP----TAIHHRLHALGA---HLSA 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH----HHHHHHHHHHHT---TSCH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH----HHHHHHHHHHHh---hcCh
Confidence 478999999999999999999999998654 344422 1234555443211 1122222 1221 1221
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHHhc
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT--FLDESD---QFGVIEAVKNLLGD 207 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts--~LD~~~---~~~l~~~l~~l~~~ 207 (263)
....++++.+++.+..++++..||+||+|++ ++++.+|+++|+||||+ ++|+.. ...+++.|++++++
T Consensus 97 ----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 97 ----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp ----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 2345677888888888889999999998765 68889999999999999 999744 47888888888654
Q ss_pred CCCcEEEEEccCcchh
Q 024738 208 SGEVTALWVTHRLEEL 223 (263)
Q Consensus 208 ~~~~tiiivtH~~~~~ 223 (263)
.|+|||+++|+....
T Consensus 170 -~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 170 -TGCSIVFLHHASKGA 184 (279)
T ss_dssp -HCCEEEEEEEC----
T ss_pred -cCCEEEEEecCCCcc
Confidence 368999999998764
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.82 E-value=4.8e-23 Score=172.97 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=98.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
|++++|+||||||||||+++|+|+++ ++| |.+++ .++|++|+.... ..++ .......
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~------~~~l----~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGT------RGPL----SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSC------EEEE----EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccc------eehh----hcccccC
Confidence 78999999999999999999999998 889 86643 467888864210 0111 0010100
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV-AIAG---ALAEACKVLLLDE--LTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-~lAr---al~~~p~llllDE--Pts~LD~~~~~~l~~~l~~l~~ 206 (263)
. .....+...++...+|+|||+++ ++++ |++.+|++||+|| |++.+|+...+.+.+++.+
T Consensus 69 ~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--- 134 (189)
T 2i3b_A 69 P-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--- 134 (189)
T ss_dssp C-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---
T ss_pred C-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---
Confidence 0 00111245566678999999988 4455 6899999999999 8999999876666555542
Q ss_pred cCCCcEEE----EEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 207 DSGEVTAL----WVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 207 ~~~~~tii----ivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
. .++| .+||+.. ..++|+|..+.+|+++...
T Consensus 135 -~--~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 135 -P--GTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -S--SCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred -C--CcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 2 2344 3459874 3455666666778877643
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.81 E-value=3.4e-22 Score=179.43 Aligned_cols=153 Identities=19% Similarity=0.127 Sum_probs=99.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCCCcccccCHHHHHHh
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
+|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++...+. .++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~-~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSA-ALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHH-HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHH-HHHHHHHHH
Confidence 6999999999999999999999999999999998843 26788887653322 267777665
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHH
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDESDQFGVIEAV 201 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~~~~~l~~~l 201 (263)
+... +.. ..+++..|+.+ .....++..++||++||||++.+|+ ++.|| |+++ ..+++.+
T Consensus 180 ~~~~-~~d--------~~llDt~G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~~~~ 240 (304)
T 1rj9_A 180 MKAR-GYD--------LLFVDTAGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGLEQA 240 (304)
T ss_dssp HHHH-TCS--------EEEECCCCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHHHHH
T ss_pred HHhC-CCC--------EEEecCCCCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHHHHH
Confidence 3210 000 00122233322 2222345555899999999999999 45555 4444 4455555
Q ss_pred HHHHhcCCCcEEEEEccCcchhhc----------CCEEEEEeCCE
Q 024738 202 KNLLGDSGEVTALWVTHRLEELEY----------ADGAFYMEDGK 236 (263)
Q Consensus 202 ~~l~~~~~~~tiiivtH~~~~~~~----------~d~v~~l~~G~ 236 (263)
+++.+. .+.|+|++||+.+..+. --.|.++..|+
T Consensus 241 ~~~~~~-~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 241 KKFHEA-VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHH-HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHH-cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 555432 25799999998654321 13566666665
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.81 E-value=1.8e-21 Score=177.90 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred cceece-eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----eE-EEEcCceEEEecCCCCcccccCHHHHHHh
Q 024738 52 PILRDC-SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTN----GH-VYVKRPKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 52 ~iL~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~----G~-I~~~~~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |+++..-. +. .+.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~----------~~---~~~i~~ 184 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----------FR---PERIRE 184 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC----------CC---HHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC----------CC---HHHHHH
Confidence 457776 6899999999999999999999999999998 6776 56 55543210 00 111221
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH---
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA-------EACKVLLLDELTTFLDESD--- 193 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~llllDEPts~LD~~~--- 193 (263)
.+...++... .+++.+-+.. . .-|.+++|++.++++++ .+|++||+||||+++|+..
T Consensus 185 i~q~~~~~~~-------~v~~ni~~~~----~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~ 251 (349)
T 1pzn_A 185 IAQNRGLDPD-------EVLKHIYVAR----A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 251 (349)
T ss_dssp HHHTTTCCHH-------HHGGGEEEEE----C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST
T ss_pred HHHHcCCCHH-------HHhhCEEEEe----c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc
Confidence 1112222211 1122211111 0 12678889999999988 6899999999999999852
Q ss_pred ---------HHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 194 ---------QFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 194 ---------~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
..+++..|++++++ .++|||+++|...... .++.......|++++++
T Consensus 252 ~~~~~r~~~~~~~l~~L~~la~~-~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 252 GALAERQQKLAKHLADLHRLANL-YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECC---------------CCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-cCcEEEEEcccccccccccCCccccCCcceEeec
Confidence 45666777777654 4689999999876543 23334445555544443
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.80 E-value=8.1e-21 Score=173.95 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=93.6
Q ss_pred EeEEEEECCCccccccceeceee-------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEc-CceE-----
Q 024738 37 SNLNYSITKKQRKLVPILRDCSF-------SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVK-RPKS----- 102 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl-------~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~-~~~~----- 102 (263)
.+++++|-... .+.|+++.+ ...+|++++|+|||||||||||++|+|+++|+ +|.|... ..+.
T Consensus 92 ~~~~iR~~~~~---~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~ 168 (356)
T 3jvv_A 92 AGAVFRTIPSK---VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES 168 (356)
T ss_dssp EEEEEEEECCS---CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC
T ss_pred cEEEEEECCCC---CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc
Confidence 35566664321 346677776 77889999999999999999999999999887 5665431 1111
Q ss_pred ---EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 103 ---FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 103 ---~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
++.|... + ...++..+ +||+||..+|++
T Consensus 169 ~~~~v~q~~~-------------------~--------------------------~~~~~~~~----~La~aL~~~Pdv 199 (356)
T 3jvv_A 169 KKCLVNQREV-------------------H--------------------------RDTLGFSE----ALRSALREDPDI 199 (356)
T ss_dssp SSSEEEEEEB-------------------T--------------------------TTBSCHHH----HHHHHTTSCCSE
T ss_pred cccceeeeee-------------------c--------------------------cccCCHHH----HHHHHhhhCcCE
Confidence 1111100 0 00011111 999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
|++|||+ |..... .+.+.+. .|.+||+++|+.+.+..|||++.|..
T Consensus 200 illDEp~---d~e~~~----~~~~~~~--~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 200 ILVGEMR---DLETIR----LALTAAE--TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp EEESCCC---SHHHHH----HHHHHHH--TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred EecCCCC---CHHHHH----HHHHHHh--cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999999 666544 3333333 26799999999998887888887754
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.78 E-value=1e-18 Score=144.59 Aligned_cols=83 Identities=25% Similarity=0.298 Sum_probs=71.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
..+++..||||||||++||++|+. +|+++||||||++||+.++..+.+.|+++.+ +.++|++||+...+..||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~---~~~~ivith~~~~~~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK---ESQFIVITLRDVMMANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCHHHHTTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc---CCEEEEEEecHHHHHhCC
Confidence 456678999999999999999974 4699999999999999999999999998753 358999999988778999
Q ss_pred EEEEE--eCCEE
Q 024738 228 GAFYM--EDGKI 237 (263)
Q Consensus 228 ~v~~l--~~G~i 237 (263)
+++.+ .+|..
T Consensus 135 ~i~~v~~~~g~s 146 (173)
T 3kta_B 135 KIIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCEE
Confidence 99855 46653
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=7.4e-21 Score=177.54 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=92.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEE-------cCceE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--HVYV-------KRPKS 102 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G--~I~~-------~~~~~ 102 (263)
.+|+++||+++|+++ .+++++||+| +|+|+||||||||+++|+|+..|+.| .+.+ ...++
T Consensus 10 ~~l~~~~l~~~y~~~-----~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVYRK-----SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTTTT-----TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEE
T ss_pred CcEEEEecceeECCE-----EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEE
Confidence 369999999999763 5999999998 99999999999999999999875443 1111 12367
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC---E
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK---V 179 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~---l 179 (263)
+++|.+.....+ ++.+++.++.... .......+.+.++ ..++.+++||++||||++.+|+ +
T Consensus 79 ~v~q~~~~~~~L-tv~Dt~g~~~~~~---~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vl 142 (418)
T 2qag_C 79 VLIKEGGVQLLL-TIVDTPGFGDAVD---NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCC 142 (418)
T ss_dssp CC------CEEE-EEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEE
T ss_pred EEEecCCcccce-eeeechhhhhhcc---chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEE
Confidence 778765432222 5666554432111 1111111222222 1345677889999999999999 9
Q ss_pred EEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 180 LLLDELT-TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 180 lllDEPt-s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
|++|||| ++||+... +.++.+.. +.+||+|.|..+.
T Consensus 143 L~ldePt~~~L~~~d~----~~lk~L~~---~v~iIlVinK~Dl 179 (418)
T 2qag_C 143 LYFIAPSGHGLKPLDI----EFMKRLHE---KVNIIPLIAKADT 179 (418)
T ss_dssp EEECCC-CCSCCHHHH----HHHHHHTT---TSEEEEEEESTTS
T ss_pred EEEecCcccCCCHHHH----HHHHHHhc---cCcEEEEEEcccC
Confidence 9999999 69999874 34444432 4678888776654
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.77 E-value=1.9e-19 Score=151.87 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=100.2
Q ss_pred cceeceee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSF-SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
+.|+.+.. -+++|++++|+||||||||||++.+++ .+ .+. +.|+..+.. .....+.+. ....+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~------v~~i~~~~~--~~~~~~~~~----~~~~~~ 71 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKK------VAYVDTEGG--FSPERLVQM----AETRGL 71 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSE------EEEEESSCC--CCHHHHHHH----HHTTTC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCc------EEEEECCCC--CCHHHHHHH----HHhcCC
Confidence 46777776 799999999999999999999999999 22 222 233333321 011112221 111222
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH--------HHHHHH
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ--KQRVAIAGALAEA-CKVLLLDELTTFLDESD--------QFGVIE 199 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq--kqRv~lAral~~~-p~llllDEPts~LD~~~--------~~~l~~ 199 (263)
..+ ++++.+ .+..+|+++ +|+++.+++++.+ |+++|+||||+.+|+.. ...+++
T Consensus 72 ~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~ 136 (220)
T 2cvh_A 72 NPE-------EALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ 136 (220)
T ss_dssp CHH-------HHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH
T ss_pred ChH-------HHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH
Confidence 221 122322 123345554 5688888899986 99999999999999732 344566
Q ss_pred HHHHHHhcCCCcEEEEEccCcc-------------hh-hcCCEEEEEeCC
Q 024738 200 AVKNLLGDSGEVTALWVTHRLE-------------EL-EYADGAFYMEDG 235 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH~~~-------------~~-~~~d~v~~l~~G 235 (263)
.|++++++ .++|||+++|... .+ ..||++++|+..
T Consensus 137 ~L~~l~~~-~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 137 VLLWIARK-HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHH-HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHH-cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 67777654 3689999999875 34 469999999864
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.74 E-value=9.2e-20 Score=156.28 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=86.3
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC---------ceEEEecCCCCcccccCH----HHHHH
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR---------PKSFVFQNPDHQVVMPTV----EADVA 122 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~---------~~~~v~q~~~~~~~~~tv----~~~~~ 122 (263)
.-..++|++++|+||||||||||+|+|+|+.+| ..|.|.+.+ .++|+||++..+..+ ++ .+++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~-~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM-ISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH-HHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHH-HhcCHHHHHHH
Confidence 346799999999999999999999999999986 688887743 245666654211000 11 11111
Q ss_pred hhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 024738 123 FGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202 (263)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~ 202 (263)
+....++. | +++ ++.++..++++||| ||+.++..+.+.+.
T Consensus 89 ~~~~~yg~-----------------------------~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 89 VFGNYYGT-----------------------------S---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp ETTEEEEE-----------------------------E---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred HHhccCCC-----------------------------C---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence 10000000 0 111 23344457999999 99999998888764
Q ss_pred HHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 203 ~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+.||+++||+++.+.. |+ +.+| .++++++...
T Consensus 129 ------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 129 ------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp ------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred ------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 25899999999998743 22 5666 5677776543
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.72 E-value=1.5e-21 Score=179.03 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=108.3
Q ss_pred ceeceeeEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEEcCceEEEecCCCCcccccCHHHHHHhhcc
Q 024738 53 ILRDCSFSVPS--GQLWMLLGPNGCGKSTLLKVLAGLLKPTN----GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLG 126 (263)
Q Consensus 53 iL~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~----G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~ 126 (263)
+.+.|++++.+ |+.++|+||||||||||+|+|+|+++|++ |+|++++... ... ........ .++.+...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~---~~~-~~~~~~~~-~~I~~~~q 231 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG---GDE-QAMQYSDY-PQMALGHQ 231 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS---SCT-TSSCTTTH-HHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC---CCc-ccCChhHH-HHHHHHHH
Confidence 45789999999 99999999999999999999999999999 7776532110 000 00111122 33433211
Q ss_pred CCCCChHHHHHHHHHHHHHcC--CCcccCCCCCCCChHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHH
Q 024738 127 NLNLTHDEVRSKVAKALDAVG--MSNYLQRPVQTLSGGQKQRVAIAGALA-EACKVLLLDE---LT------TFLDESDQ 194 (263)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~--l~~~~~~~~~~LSgGqkqRv~lAral~-~~p~llllDE---Pt------s~LD~~~~ 194 (263)
..........+.+- -.+..+..+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+
T Consensus 232 -------~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 232 -------RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp -------HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH
T ss_pred -------HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH
Confidence 00000001111110 011112233456778888888888875 6999999999 65 58999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
..+.+.|.++.++ .+.+||+++|.-....+++++.++++ ++..++++++
T Consensus 305 ~~l~~~l~~l~~~-~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 305 QQFQQLLKKLLDK-YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp HHHHHHHHHHHHG-GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred HHHHHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 9999999887543 25789999986333345666555543 3334444444
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.70 E-value=3.2e-20 Score=160.81 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEEcC---------ceEEEecCCCCcccccCHHHHHHhhcc----
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLA---GLLKPTNGHVYVKR---------PKSFVFQNPDHQVVMPTVEADVAFGLG---- 126 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~p~~G~I~~~~---------~~~~v~q~~~~~~~~~tv~~~~~~~~~---- 126 (263)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+ .+.+++|+....+ ..++.+++...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP-DHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999 99999999987753 1334556543222 2267777765321
Q ss_pred ----CCCCChHHHHHHHHHHH--HHcC------------CCcccCCCCCCCChHHHHHHHHHHHH-hhCCCEEEEe----
Q 024738 127 ----NLNLTHDEVRSKVAKAL--DAVG------------MSNYLQRPVQTLSGGQKQRVAIAGAL-AEACKVLLLD---- 183 (263)
Q Consensus 127 ----~~~~~~~~~~~~~~~~l--~~~~------------l~~~~~~~~~~LSgGqkqRv~lAral-~~~p~llllD---- 183 (263)
..+..... ..+..+. ..++ +....++++.+||| |+ +|+ +.+|++++||
T Consensus 105 ~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 105 QHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp SCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 01121111 1222222 1223 23345777889999 66 777 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~ 206 (263)
|||++||+.++..+.+.+.++.+
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.70 E-value=2.5e-20 Score=154.52 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=83.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------eEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP-----------KSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~-----------~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
.+++|++++|+||||||||||+|+|+|. |+.|.|.+++. ++|++|.+. ...++.+++.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~---~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ---QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh---hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78899988642 233443321 1125666654421100
Q ss_pred ---CCChHHHHHHHHHHHHHcCCCccc--CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 129 ---NLTHDEVRSKVAKALDAVGMSNYL--QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 129 ---~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
+.. ..++.++..+++..+. +.++..+|+|++||++++|++.++|+++ +|+...+.+++.+..
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 000 0000001111222222 4456789999999999999999999886 688888888877766
Q ss_pred H
Q 024738 204 L 204 (263)
Q Consensus 204 l 204 (263)
+
T Consensus 147 l 147 (191)
T 1zp6_A 147 L 147 (191)
T ss_dssp C
T ss_pred c
Confidence 5
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.69 E-value=2.4e-18 Score=158.39 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=82.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+. +..+. ... .+.+ ..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-------~~e~~-~~~---~~~~------v~ 187 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-------PIEYV-FKH---KKSI------VN 187 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-------SCCSC-CCC---SSSE------EE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-------cHhhh-hcc---CceE------EE
Confidence 455554 7899999999999999999999999999998 899965321 10000 000 0000 00
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
.. .+|++ +..| +.+|+++|..+|++|++|||+ |+.... ..++.. . .|.
T Consensus 188 Q~-----------~~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~-~--~g~ 235 (372)
T 2ewv_A 188 QR-----------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA-E--TGH 235 (372)
T ss_dssp EE-----------EBTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH-T--TTC
T ss_pred ee-----------ecCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH-h--cCC
Confidence 00 12322 2344 469999999999999999999 776543 334432 2 367
Q ss_pred EEEEEccCcchhhcCCEE
Q 024738 212 TALWVTHRLEELEYADGA 229 (263)
Q Consensus 212 tiiivtH~~~~~~~~d~v 229 (263)
+++.++|+.+....+||+
T Consensus 236 ~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 236 LVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp EEEECCCCCSHHHHHHHH
T ss_pred EEEEEECcchHHHHHHHH
Confidence 899999987644455554
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.8e-18 Score=161.39 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=111.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCC---C----CceEEEEcCceEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLLK---P----TNGHVYVKRPKSF 103 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~---p----~~G~I~~~~~~~~ 103 (263)
.|++++ +++|++. + |+++||++++|++ ++|+||||||||||+|+|+|+.- + ..|. . ...++|
T Consensus 16 ~l~~~~-~~~y~~~-----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~-~-~~~i~~ 86 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGV-Q-LQSNTY 86 (427)
T ss_dssp -CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSC-E-EEEEEE
T ss_pred eEEEee-EEEECCe-----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccc-e-EeeEEE
Confidence 467777 8888652 5 9999999999999 99999999999999999999841 1 0111 1 125899
Q ss_pred EecCCCCcccccCHHHHHHhhccCCC---CC--hHHHHHHHHHHHHHc-CCCc----ccCCCC-----------CCCChH
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLN---LT--HDEVRSKVAKALDAV-GMSN----YLQRPV-----------QTLSGG 162 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~LSgG 162 (263)
++|++.....+ |+.+|+.++....+ +. .+.....+.+++... ++.. ..+.++ ..|+-.
T Consensus 87 v~Q~~~l~~~l-tv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 87 DLQESNVRLKL-TIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEC--CEEEE-EEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EeecCcccccc-chhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 99987543222 77777665432110 00 011234455556654 4431 112221 246665
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
. +.++++|..+++++++|||+..|.+.....+.+.+++-.. ..|+.|+.+|.+-
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~d 219 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTDD 219 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC---
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCCc
Confidence 5 7999999999999999999999999999999999987333 3478899888753
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.68 E-value=1e-18 Score=160.21 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=103.9
Q ss_pred EEEeEEEE---ECCCccccccce---------eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE
Q 024738 35 ECSNLNYS---ITKKQRKLVPIL---------RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS 102 (263)
Q Consensus 35 ~~~nl~~~---y~~~~~~~~~iL---------~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~ 102 (263)
++++++|+ |+... .++| +++||++++|++++|+||||||||||+++|+|+++|++|.|++.+..-
T Consensus 137 ~f~~v~f~~~~Y~~~~---~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFE---QELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE 213 (361)
T ss_dssp TTSCCCCSCSCCCHHH---HHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC
T ss_pred CcCccccccccccchh---HHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc
Confidence 77888887 74311 1355 999999999999999999999999999999999999999999975311
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
+-.. ..+..+.+. .. .+.. ..+++++.++-.|+.++..+|+.+++
T Consensus 214 ~~~~---------~~~~~v~~v--~~---q~~~---------------------~~~~~~~t~~~~i~~~l~~~pd~~l~ 258 (361)
T 2gza_A 214 LFLP---------DHPNHVHLF--YP---SEAK---------------------EEENAPVTAATLLRSCLRMKPTRILL 258 (361)
T ss_dssp CCCT---------TCSSEEEEE--CC----------------------------------CCHHHHHHHHTTSCCSEEEE
T ss_pred cCcc---------ccCCEEEEe--ec---Cccc---------------------cccccccCHHHHHHHHHhcCCCEEEE
Confidence 0000 000000000 00 0000 01245556889999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
|||.. ..+.+.+..+.. +..|++.++|..+....+||+..+..+.
T Consensus 259 ~e~r~-------~~~~~~l~~l~~--g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 259 AELRG-------GEAYDFINVAAS--GHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp SCCCS-------THHHHHHHHHHT--TCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred cCchH-------HHHHHHHHHHhc--CCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 99986 234556666532 2347899999976556788887777653
No 123
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.67 E-value=5.8e-20 Score=152.57 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=99.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-------eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP-------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~-------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 136 (263)
|++++|+||||||||||+|+|++ |.+|.+++++. .++++|.... ....++.+++.+...... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~------~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESD-ELLALTWKNITDLTVNFL------L 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCH-HHHHHHHHHHHHHHHHHH------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccch-hHHHHHHHHHHHHHHHHH------h
Confidence 68999999999999999999997 67898988642 3444443211 011144555433210000 0
Q ss_pred HHHHHHHHHcCCCcccCCCCCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 024738 137 SKVAKALDAVGMSNYLQRPVQTL--SGGQKQRVAIAG------ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208 (263)
Q Consensus 137 ~~~~~~l~~~~l~~~~~~~~~~L--SgGqkqRv~lAr------al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~ 208 (263)
.....+++.+. .....+...++ |+||+|++.++. +++.+|+...+|+ ++|+..+.. ++.+..+..
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-- 144 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-- 144 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC--
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC--
Confidence 00000000000 00000111234 888888888888 8999999888884 899988888 888887643
Q ss_pred CCcEEEEEccC-cchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 209 GEVTALWVTHR-LEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 209 ~~~tiiivtH~-~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
.+.++|.+||. ++.+ +.||+|+ ++|+++.+|+++-+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 25789999998 9888 4799998 99999999987654
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=3.6e-16 Score=133.65 Aligned_cols=148 Identities=15% Similarity=0.245 Sum_probs=86.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKP-----TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p-----~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++... .. +....+.+.. ...+...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~-------~~--~~~~~~~~~~----~~~g~~~ 86 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE-------GT--FRPERLLAVA----ERYGLSG 86 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-------SC--CCHHHHHHHH----HHTTCCH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC-------CC--cCHHHHHHHH----HHcCCCH
Confidence 589999999999999999999999999 5665 4555554432 10 0000111111 1112222
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-------H-----HHHH
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR-VAIAGALA--EACKVLLLDELTTFLDES-------D-----QFGV 197 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR-v~lAral~--~~p~llllDEPts~LD~~-------~-----~~~l 197 (263)
++ +++.+.+ ...++..+... +.-+..++ .+|+++++|||++.+|+. . ...+
T Consensus 87 ~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 87 SD-------VLDNVAY-------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp HH-------HHHTEEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred HH-------HhhCeEE-------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 11 2222211 12345555433 22233333 589999999999999985 3 3456
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-------------------h-cCCEEEEEeCC
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-------------------E-YADGAFYMEDG 235 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-------------------~-~~d~v~~l~~G 235 (263)
+..|.+++++ .|+|||+++|..... + .||.+++|+.+
T Consensus 153 ~~~l~~~~~~-~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADE-FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHH-HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHH-cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 6666666654 368999999966532 2 69999999865
No 125
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.66 E-value=3e-20 Score=169.02 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=112.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+.. .+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+
T Consensus 29 ~ie~~~~~~~~~~~-----~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~ 103 (337)
T 2qm8_A 29 LAESRRADHRAAVR-----DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSIL 103 (337)
T ss_dssp HHTCSSHHHHHHHH-----HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSS
T ss_pred HHeeCCcccccChH-----HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchH
Confidence 58899999998642 589999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEecCCCCcccc-c----------CHHHHHH-h----------------------------hccCCCCC-hHH
Q 024738 100 ----PKSFVFQNPDHQVVM-P----------TVEADVA-F----------------------------GLGNLNLT-HDE 134 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~-~----------tv~~~~~-~----------------------------~~~~~~~~-~~~ 134 (263)
.+++++|++..+... + ++.+.+. + .+...... ..+
T Consensus 104 ~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 104 GDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp CCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC---
T ss_pred HHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCccc
Confidence 257788876543210 0 1122110 0 00000000 011
Q ss_pred H---HHHHHHHHHHcCCCcccCC-CCCCCChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024738 135 V---RSKVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAE------ACKVLLLDELTTFLDESDQFGVIEAVKNL 204 (263)
Q Consensus 135 ~---~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqRv~lAral~~------~p~llllDEPts~LD~~~~~~l~~~l~~l 204 (263)
. ++.+.+....+.+ ++.|. ....+|+|++|++..|++++. .|++++ +|++|..+..++++.|.++
T Consensus 184 ~~~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 184 LQGIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp ---CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0 0111122222233 33442 335689999999999999987 688876 9999999999999999886
Q ss_pred Hh
Q 024738 205 LG 206 (263)
Q Consensus 205 ~~ 206 (263)
..
T Consensus 259 ~~ 260 (337)
T 2qm8_A 259 RS 260 (337)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.66 E-value=8.4e-17 Score=147.13 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=86.3
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEc-C---------ceEEEecCCCCcccccCHHHHH
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVK-R---------PKSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~-~---------~~~~v~q~~~~~~~~~tv~~~~ 121 (263)
-++++++. .+|++++|+||||||||||+|+|+|+.. |+.|+|.+. + .+++++|++.. +..+++.++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l-~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV-IDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEE-EECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEe-cCcccHHHh-
Confidence 46777775 4899999999999999999999999999 999999875 2 47889987642 223366652
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 122 AFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
+ ......++..+.+.++++.+++..+.++++.+|| ||+||++||+++
T Consensus 282 --~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred --h--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 2 2234555666777888999999999999999999 999999999864
No 127
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.66 E-value=4.5e-16 Score=142.89 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=67.9
Q ss_pred CCCCCCChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 154 RPVQTLSGGQKQRV------AIAGALAEA-CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 154 ~~~~~LSgGqkqRv------~lAral~~~-p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|.++. . +.+||++||+++....|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~--~~~vi~~th~~~~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S--IPQMIIITHHRELEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S--CSEEEEEESCGGGGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c--CCeEEEEEChHHHHhhC
Confidence 56679999999988 567889999 99999999999999999999999999863 2 35899999998765789
Q ss_pred CEEEEEe
Q 024738 227 DGAFYME 233 (263)
Q Consensus 227 d~v~~l~ 233 (263)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.63 E-value=4.6e-16 Score=128.02 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=76.0
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
+|.+++|+.++|+||||||||||+++|++.+.|.+|.. +.| . +..+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----~~~----------~-~~~~~~~~-------------- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----GYF----------F-DTKDLIFR-------------- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----CCE----------E-EHHHHHHH--------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----EEE----------E-EHHHHHHH--------------
Confidence 46778899999999999999999999999987766631 111 1 22222111
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-FLDESDQFGVIEAVKNLLGDSGEVTALWV 216 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-~LD~~~~~~l~~~l~~l~~~~~~~tiiiv 216 (263)
+......-... -+...+.+|++|++|||++ ++|+..+..+.+++.+... .++++|++
T Consensus 82 -~~~~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~--~~~~ii~t 139 (180)
T 3ec2_A 82 -LKHLMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN--NLKSTIIT 139 (180)
T ss_dssp -HHHHHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH--TTCEEEEE
T ss_pred -HHHHhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH--cCCCEEEE
Confidence 10111110000 0112234999999999995 9999999999999988754 35799999
Q ss_pred ccCcc
Q 024738 217 THRLE 221 (263)
Q Consensus 217 tH~~~ 221 (263)
||...
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99764
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.62 E-value=3.5e-17 Score=152.58 Aligned_cols=146 Identities=20% Similarity=0.175 Sum_probs=94.8
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEEcC-ceEEEecCCCCcccccCHHHHH
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-----------KPTNGHVYVKR-PKSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----------~p~~G~I~~~~-~~~~v~q~~~~~~~~~tv~~~~ 121 (263)
-++++|+++.|+.++|+|+|||||||||++|+|.. .|+.|.|.+++ ..-.+.+.|.... ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~---~a~--- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE---GAS--- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC---CGG---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEecccccc---chh---
Confidence 47999999999999999999999999999999983 44455555443 2223333332110 000
Q ss_pred HhhccCCCCChHHHH--HHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 024738 122 AFGLGNLNLTHDEVR--SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199 (263)
Q Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~ 199 (263)
....+.....+ +++..++..+++. ++++.+||+||+|++++|++|+..|.+|++ |.+|.... ..++
T Consensus 221 ----~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~ 288 (416)
T 1udx_A 221 ----EGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVK 288 (416)
T ss_dssp ----GSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHH
T ss_pred ----hhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHH
Confidence 01111111110 1122233334444 567789999999999999999999999999 99999876 4455
Q ss_pred HHHHHHhcCCCcEEEEEcc
Q 024738 200 AVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH 218 (263)
.+.+..++ .+.+++++|.
T Consensus 289 ~l~~~l~~-~g~~vi~iSA 306 (416)
T 1udx_A 289 ALADALAR-EGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHT-TTSCEEECCT
T ss_pred HHHHHHHh-cCCeEEEEEC
Confidence 55554433 3566666653
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.62 E-value=2.5e-18 Score=140.20 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=64.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEEe
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFVF 105 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v~ 105 (263)
++.++++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.+++. ..+++
T Consensus 8 ~~~~~~~~~~g~-----~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~ 81 (158)
T 1htw_A 8 IPDEFSMLRFGK-----KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMI 81 (158)
T ss_dssp ECSHHHHHHHHH-----HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEE
T ss_pred cCCHHHHHHHHH-----HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcce
Confidence 444566777764 25899999999999999999999999999999999999 99999987642 12678
Q ss_pred cCCCCcccccCHHHHHH
Q 024738 106 QNPDHQVVMPTVEADVA 122 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~ 122 (263)
|++..+ .+ |+.+|+.
T Consensus 82 q~~~l~-~l-tv~e~l~ 96 (158)
T 1htw_A 82 YHFDLY-RL-ADPEELE 96 (158)
T ss_dssp EEEECT-TC-SCTTHHH
T ss_pred eccccc-cC-CcHHHHH
Confidence 876543 33 7777764
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.58 E-value=8.3e-19 Score=163.70 Aligned_cols=137 Identities=22% Similarity=0.306 Sum_probs=93.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
++++++.+.|+. ..+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+
T Consensus 144 ~~l~~Lg~~~~~-----~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~ 216 (418)
T 1p9r_A 144 LDLHSLGMTAHN-----HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQ 216 (418)
T ss_dssp CCGGGSCCCHHH-----HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred CCHHHcCCCHHH-----HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEE
Confidence 455555555532 2367777 53 89999999999999999999999999999999998742
Q ss_pred ---ceEEEe---------cCCCCcccc-----cCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCC
Q 024738 100 ---PKSFVF---------QNPDHQVVM-----PTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158 (263)
Q Consensus 100 ---~~~~v~---------q~~~~~~~~-----~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 158 (263)
.+++.| |+|...... .|+.+++.++.... ........+ +.+.+..+++.... .+.+
T Consensus 217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~ 293 (418)
T 1p9r_A 217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSS 293 (418)
T ss_dssp CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHH
T ss_pred EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHH
Confidence 123444 777542111 26777776542110 000111112 22356778888654 6789
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEE
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llll 182 (263)
|||||+|| |||+|+.+|+++.-
T Consensus 294 LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 294 LLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHH--hhhhhcCCCCccCC
Confidence 99999999 99999999998763
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.58 E-value=9e-17 Score=145.54 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=97.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCCCcccccCHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~~~~~~~tv~~~ 120 (263)
..++|++++|+||||||||||+++|+|+++|++|+|.+.+ .+.+++|.....+. .++.+|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~-~~v~e~ 203 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPA-AVAYDA 203 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHH-HHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHH-HHHHHH
Confidence 3478999999999999999999999999999999998853 13477776543222 267777
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~ 200 (263)
+.++.... .. . -+++..|+.......+ .+.-.++|++..++.+++||.++. . .+.+.
T Consensus 204 l~~~~~~~-~d------~--vliDtaG~~~~~~~l~-------~eL~~i~ral~~de~llvLDa~t~-~------~~~~~ 260 (328)
T 3e70_C 204 IQHAKARG-ID------V--VLIDTAGRSETNRNLM-------DEMKKIARVTKPNLVIFVGDALAG-N------AIVEQ 260 (328)
T ss_dssp HHHHHHHT-CS------E--EEEEECCSCCTTTCHH-------HHHHHHHHHHCCSEEEEEEEGGGT-T------HHHHH
T ss_pred HHHHHhcc-ch------h--hHHhhccchhHHHHHH-------HHHHHHHHHhcCCCCEEEEecHHH-H------HHHHH
Confidence 76542100 00 0 0122223322222222 333348999998888889986554 3 34445
Q ss_pred HHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeCCEEE
Q 024738 201 VKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMEDGKIV 238 (263)
Q Consensus 201 l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~G~i~ 238 (263)
++.+.+. .+.|+|++||.-+.. ...-.|.++..|+-+
T Consensus 261 ~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 5555432 368999999954321 134678888888754
No 133
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.58 E-value=3.4e-19 Score=160.64 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=85.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEEcCceEEEecC-CC-------------CcccccCHHHHH-
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL--------KPTNGHVYVKRPKSFVFQN-PD-------------HQVVMPTVEADV- 121 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~--------~p~~G~I~~~~~~~~v~q~-~~-------------~~~~~~tv~~~~- 121 (263)
++++|+|+||||||||+|.|+|+. .|+.|+|.+++.. +... .. ...+...+..-+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~--l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~ 82 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL--IGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE--ECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH--HhCCCCCEEEECCCceEEcccHHHHHHHHHHHh
Confidence 589999999999999999999997 7899999887531 1110 00 000000111110
Q ss_pred -----Hhh-----ccCCCCC-hHHHHHHH---HH---------HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 122 -----AFG-----LGNLNLT-HDEVRSKV---AK---------ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 122 -----~~~-----~~~~~~~-~~~~~~~~---~~---------~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+. ....++. .......+ .+ ++..+++....++.. +||+||+||+..+++++.+|+
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTT
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcc
Confidence 000 0011111 11111111 11 122234444333333 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
++ ||| ..+.+.|+++. .+.+|+++||+...+
T Consensus 162 l~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDL 192 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCG
T ss_pred cC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCH
Confidence 87 999 66778888763 357999999965443
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.58 E-value=4.4e-17 Score=154.19 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=92.4
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCCCcccc
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPDHQVVM 114 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~~~~~~ 114 (263)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ .++|++|+..... .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p-~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS-A 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH-H
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH-H
Confidence 4689999999999999999999999999999999999999999842 2578888764322 2
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh-hCC-CEEEEeCCCCCCCHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA-EAC-KVLLLDELTTFLDES 192 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-~~p-~llllDEPts~LD~~ 192 (263)
.++.+|+.++... +.+ . -+++..|........+. -.+|++.+++++. ..| ++||...|++|.|..
T Consensus 362 ~tV~e~l~~a~~~-~~D------v--VLIDTaGrl~~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al 428 (503)
T 2yhs_A 362 SVIFDAIQAAKAR-NID------V--LIADTAGRLQNKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV 428 (503)
T ss_dssp HHHHHHHHHHHHT-TCS------E--EEECCCCSCCCHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH
T ss_pred HHHHHHHHHHHhc-CCC------E--EEEeCCCccchhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHH
Confidence 3788887765321 110 0 01111222111000111 2247888888764 456 456666688886654
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
. .++.+... -+.|.|++||
T Consensus 429 ~------~ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 429 S------QAKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp H------HHHHHHHH-TCCSEEEEEC
T ss_pred H------HHHHHHhh-cCCCEEEEEc
Confidence 2 23333221 2578899999
No 135
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.57 E-value=5.1e-17 Score=144.80 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=83.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhc------cCCCCChHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGL------GNLNLTHDEV 135 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~------~~~~~~~~~~ 135 (263)
.++.+++|+|++|||||||.+.|++++.+.... ...+.+|+|+.. .+..+..+|+.++. ...+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f--~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDF--YLTHEDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGG--BCCHHHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccc--cCChHHHHHHhccccccchhhhccCcchhH
Confidence 568899999999999999999999998764111 123445589863 22337778876642 1111111111
Q ss_pred HHHHHHHHHHcCCC--------cccCCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q 024738 136 RSKVAKALDAVGMS--------NYLQRPVQTLSGGQKQRVAIA--GALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 136 ~~~~~~~l~~~~l~--------~~~~~~~~~LSgGqkqRv~lA--ral~~~p~llllDEPts~LD~~ 192 (263)
...+.+.++.+.-. -....+...+||||+||+++| +++ +|+|||+||||+++|+.
T Consensus 104 ~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 104 MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 23445556655322 123455679999999999997 555 99999999999999985
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=6e-15 Score=133.26 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=78.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEEcCc-----------eEEEecCCCCcccccCHHHHHHhhccCCCC-Ch
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRP-----------KSFVFQNPDHQVVMPTVEADVAFGLGNLNL-TH 132 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~~~-----------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~ 132 (263)
.+.|.||||+|||||+++++| +..|+.|.+.+++. +++++|.+.... . ....+. ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI-T----------PSDMGNNDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEE-C----------CC----CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEe-c----------HhhcCCcch
Confidence 489999999999999999999 88999999987642 344444331100 0 000011 11
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
...++.+.++.+..++.... .||| +..+|+++|+|||++ ||+..+..+++.+.+.. .+.+
T Consensus 107 ~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~ 166 (354)
T 1sxj_E 107 IVIQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIR 166 (354)
T ss_dssp HHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEE
T ss_pred HHHHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCE
Confidence 11222233332323333222 5676 778999999999999 99999999999998863 2579
Q ss_pred EEEEccCcchh-h-cCCEEEEE
Q 024738 213 ALWVTHRLEEL-E-YADGAFYM 232 (263)
Q Consensus 213 iiivtH~~~~~-~-~~d~v~~l 232 (263)
+|++||+++.+ . +.+|+..+
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEE
T ss_pred EEEEeCCHHHHHHHHHhhceEE
Confidence 99999998754 2 34444333
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.55 E-value=1.2e-14 Score=134.78 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=86.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHH--HHhCCCCCCce-----EEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLK--VLAGLLKPTNG-----HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk--~i~Gl~~p~~G-----~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
-|++|++++|+||||||||||++ ++.++.+++.| .++++.. .. +....+.. + ....++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E-------~~--~~~~rl~~-~---a~~~gl~~ 240 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE-------GT--FRPVRLVS-I---AQRFGLDP 240 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-------SC--CCHHHHHH-H---HHHTTCCH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC-------Cc--cCHHHHHH-H---HHHcCCCh
Confidence 68999999999999999999999 45677776544 4444321 10 00001111 0 11112221
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHH--HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HH
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK--QRVAIAGALA--EACKVLLLDELTTFLDESDQ------------FG 196 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk--qRv~lAral~--~~p~llllDEPts~LD~~~~------------~~ 196 (263)
+ .+++.+-+ .....++. +.+.-++.++ .+|+++++|||++.+|+... .+
T Consensus 241 ~-------~vleni~~--------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~ 305 (400)
T 3lda_A 241 D-------DALNNVAY--------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK 305 (400)
T ss_dssp H-------HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHH
T ss_pred H-------hHhhcEEE--------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHH
Confidence 1 12222111 11122333 3333333332 57999999999999997533 56
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCc-------------------chhh-cCCEEEEEeCCE
Q 024738 197 VIEAVKNLLGDSGEVTALWVTHRL-------------------EELE-YADGAFYMEDGK 236 (263)
Q Consensus 197 l~~~l~~l~~~~~~~tiiivtH~~-------------------~~~~-~~d~v~~l~~G~ 236 (263)
+++.|++++++ .++|||+++|.. ..++ .+|.+++|++++
T Consensus 306 il~~L~~lake-~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 306 FMRALQRLADQ-FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHH-HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHH-cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 77888888764 368999999982 1234 589999998763
No 138
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=1.4e-16 Score=142.64 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=81.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cC-------------ceEEEecCCCCcc----cccCHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KR-------------PKSFVFQNPDHQV----VMPTVEA 119 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~-------------~~~~v~q~~~~~~----~~~tv~~ 119 (263)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +| .+||++|.|.... ...|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999988 33 3699999986431 11267 7
Q ss_pred HH--Hhh----c--cCCC-CChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHH
Q 024738 120 DV--AFG----L--GNLN-LTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 120 ~~--~~~----~--~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr 171 (263)
|+ .|+ + ...+ ....+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 343 1 1222 122233456888999999986 788999999998888899986
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.53 E-value=9.7e-15 Score=117.56 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=69.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
.+|+++ +|+.++|+||||||||||++++++...+ +|. ...|+..... .. .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~---~~-~--------------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASM---PL-T--------------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTS---CC-C---------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHh---hH-H---------------
Confidence 356666 8999999999999999999999999876 451 1233333210 00 0
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
+++.+|++|++|||++ ++...++.+++++.++..+ |.
T Consensus 79 ----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~--g~ 115 (149)
T 2kjq_A 79 ----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS--GK 115 (149)
T ss_dssp ----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH--TC
T ss_pred ----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc--CC
Confidence 2356899999999998 6665688899999887643 45
Q ss_pred E-EEEEccC
Q 024738 212 T-ALWVTHR 219 (263)
Q Consensus 212 t-iiivtH~ 219 (263)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 7 8888884
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.53 E-value=9.3e-18 Score=160.31 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=102.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------eEEEecCCCCcccccCHHHHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------KSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------~~~v~q~~~~~~~~~tv~~~~ 121 (263)
.++++++|.+++|++++|+|||||||||||++|+|+++|++|.|++.+. +++..|... .....+..+.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~-~~~~~~~~~~l 326 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM-GEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS-SSCCBCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc-ccCCcCHHHHH
Confidence 4789999999999999999999999999999999999999999998653 233443321 00111444444
Q ss_pred HhhccCC-------CCChHHHHHH------------------HHHHHHHc-----CCCc----ccC---CCCCCCChHHH
Q 024738 122 AFGLGNL-------NLTHDEVRSK------------------VAKALDAV-----GMSN----YLQ---RPVQTLSGGQK 164 (263)
Q Consensus 122 ~~~~~~~-------~~~~~~~~~~------------------~~~~l~~~-----~l~~----~~~---~~~~~LSgGqk 164 (263)
...+... .....+.... +.++++++ ++.. .++ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 3222110 1111111111 12223332 2221 111 22346899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEE--EccCcchhh-cCC
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW--VTHRLEELE-YAD 227 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiii--vtH~~~~~~-~~d 227 (263)
||.++|. + | ++|||+.....+++.+.++.. .+.|+++ +||+++++. .|+
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~--~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP--KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET--TTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc--cCCEEEEcccHHHHHHHHHHcC
Confidence 9987652 2 7 999999888777777766632 3578875 999999874 564
No 141
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.50 E-value=2.8e-18 Score=144.38 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=81.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC-------------CCceEEEEcCceEEEecCCCC---------cccccCHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK-------------PTNGHVYVKRPKSFVFQNPDH---------QVVMPTVEA 119 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-------------p~~G~I~~~~~~~~v~q~~~~---------~~~~~tv~~ 119 (263)
++|++++|+||||||||||+++|+|+++ |..|++ ++ +.|.+++... +.+..++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g-~~~~~~~~~~~~~~i~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DG-KDYYFVTREMMQRDIAAGDFIEHAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BT-TTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CC-ceEEEccHHHHHHHHHcCCCEeeeeecC
Confidence 5799999999999999999999999875 556652 22 2233332110 000001111
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH---HHHH-HHhhCCCEEEEeCCCCCCCHHHHH
Q 024738 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV---AIAG-ALAEACKVLLLDELTTFLDESDQF 195 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv---~lAr-al~~~p~llllDEPts~LD~~~~~ 195 (263)
|+ ++.+.+ .+.++++.-.. ...+.. -.|-++.. ..|+ +++.+|++++|||||+++|..+.+
T Consensus 79 n~------~g~~~~----~i~~~~~~~~~-~~~~~~----~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 79 NL------YGTSKE----AVRAVQAMNRI-CVLDVD----LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp EE------EEEEHH----HHHHHHHTTCE-EEEECC----HHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred cc------CCCCHH----HHHHHHHcCCc-EEEECC----HHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 11 112222 23333432110 000000 01111110 1456 788899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 196 GVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 196 ~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
.+.+.|.+...+ +.++| .. ..+|+++++++
T Consensus 144 ~i~~~l~~~~~~------~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 144 SLAKRLAAARTD------MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHH------TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHH------HHHhh--cc-CCceEEEECCC
Confidence 999888876432 23456 22 57899888764
No 142
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.47 E-value=3.5e-17 Score=148.14 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=108.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEEc---
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSG-------QLWMLLGPNGCGKSTLLKVLAGLL----KPTNGHVYVK--- 98 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~--- 98 (263)
+++.++++..|++. .+++++++.+++| +.++|+||||||||||+++|+|.+ .+++|.+...
T Consensus 18 ~lr~~~l~~~~g~~-----~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 18 FLRPKSLDEFIGQE-----NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TTSCSSGGGCCSCH-----HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred HcCCccHHHccCcH-----HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 45666777777653 4899999999887 899999999999999999999988 6777776532
Q ss_pred ----------CceEEEecCCCCcccccCHHHHHHhhccCCCCC----hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHH
Q 024738 99 ----------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT----HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164 (263)
Q Consensus 99 ----------~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 164 (263)
..+.+++|... ...++.+++...+...... .....+.+...+..+++.. ...++..||+|++
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~---l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~ 168 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHR---LNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLR 168 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGG---CCHHHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHH
T ss_pred HHHHHHHccCCCEEEEcchhh---cCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHH
Confidence 34788888653 2236777664333222211 1122233444556666654 5677889999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
||+.++ .+||+....++.++|++.++.. + ++|+.+.+.
T Consensus 169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~-~-----~~~~~~~~~ 206 (334)
T 1in4_A 169 SRFGII----------------LELDFYTVKELKEIIKRAASLM-D-----VEIEDAAAE 206 (334)
T ss_dssp TTCSEE----------------EECCCCCHHHHHHHHHHHHHHT-T-----CCBCHHHHH
T ss_pred HhcCce----------------eeCCCCCHHHHHHHHHHHHHHc-C-----CCcCHHHHH
Confidence 998655 7788888888999998876532 3 357766553
No 143
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=2e-16 Score=130.49 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=77.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcCceEEEecCCCCcccccCHHH-HHH----hhccC----CCCCh
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRPKSFVFQNPDHQVVMPTVEA-DVA----FGLGN----LNLTH 132 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~~~~~v~q~~~~~~~~~tv~~-~~~----~~~~~----~~~~~ 132 (263)
++++|+|+||||||||+++|+|+++|+ .|+|.+++.--.-+..+ ...+.+. .+. +.... .....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~----~~d~~r~~~ig~~~~~~~~~~~~~i~~~~ 78 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKE----GKDSWKIYNSGADVVIASPVKLAFIRRVS 78 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----------------CHHHHHHHHTCEEEEECSSEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCcc----chhHHHHHhcCCceEEECCCcEEEEecCC
Confidence 589999999999999999999999998 89998865310100000 0001221 121 00000 00001
Q ss_pred HHHHHHHHHHHHH-c-CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE-------EEeCCCC---CCCHHHHHHHHHH
Q 024738 133 DEVRSKVAKALDA-V-GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL-------LLDELTT---FLDESDQFGVIEA 200 (263)
Q Consensus 133 ~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll-------llDEPts---~LD~~~~~~l~~~ 200 (263)
.+....+.++++. + +++..... .|||||+||++||||++.+|++. +=|.|.. -+|....+.+.+.
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt~i~E---glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~ 155 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDLVITE---GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEF 155 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSEEEEE---SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHH
T ss_pred hhhhhCHHHHHHhhCCCCCEEEEC---CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHH
Confidence 1111134455554 4 45433322 39999999999999999999873 2355532 2344455677777
Q ss_pred HHHHHhc
Q 024738 201 VKNLLGD 207 (263)
Q Consensus 201 l~~l~~~ 207 (263)
+.+...+
T Consensus 156 i~~~~~~ 162 (171)
T 2f1r_A 156 ILSLLRE 162 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 7666544
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.45 E-value=2.2e-16 Score=133.36 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=89.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC----ChHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL----THDEVR 136 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~----~~~~~~ 136 (263)
.++|++++|+||||||||||+++|+|+++|+ | ...++++++.. .+..+..+++... ...+. ......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGF--HLDNRLLEPRGLL-PRKGAPETFDFEGFQ 89 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGG--BCCHHHHGGGTCG-GGTTSGGGBCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCC--cCCHHHHHHhccc-ccCCCCchhhHHHHH
Confidence 5789999999999999999999999999875 4 23566666542 1111222222110 01111 111112
Q ss_pred HHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA-GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 137 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA-ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
+.+..+-..-.+.-........+|+||+||+++| ++++.++.++++|||.. ..+.+.. -.+++
T Consensus 90 ~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~-----d~~i~ 153 (208)
T 3c8u_A 90 RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIW-----DVSIR 153 (208)
T ss_dssp HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTC-----SEEEE
T ss_pred HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhc-----CEEEE
Confidence 2222221111122111223346799999999998 78888888888888731 1122221 26788
Q ss_pred EccCcch-hh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 216 VTHRLEE-LE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 216 vtH~~~~-~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++.+. +. .+.|. +..|. +.+++...
T Consensus 154 vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 154 LEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp ECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred EeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 9998886 33 45552 34453 44555443
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.45 E-value=1.7e-16 Score=142.28 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=54.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCCC--C
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSV-------------------PSGQLWMLLGPNGCGKSTLLKVLAGLLK--P 90 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i-------------------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p 90 (263)
.+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |
T Consensus 36 ~~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp TTCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred cccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 3699999999994 4899999988 8999999999999999999999999988 9
Q ss_pred CceEEEE
Q 024738 91 TNGHVYV 97 (263)
Q Consensus 91 ~~G~I~~ 97 (263)
++|+|.+
T Consensus 109 ~~G~i~v 115 (308)
T 1sq5_A 109 EHRRVEL 115 (308)
T ss_dssp TCCCEEE
T ss_pred CCCeEEE
Confidence 9999988
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.42 E-value=5.4e-18 Score=145.31 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=65.7
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh-CCC------------CCCceEEEEcCceEEEecCCCCcccccCHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA-GLL------------KPTNGHVYVKRPKSFVFQNPDHQVVMPTVE 118 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~------------~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~ 118 (263)
+..+++||++++|++++|+||||||||||+++|+ |++ +|..|++ + .++|.++++..+... +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~-g~~~~~~~~~~~~~~-~~~ 90 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E-GKDYYFVDREEFLRL-CSN 90 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B-TTTBEECCHHHHHHH-HHT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C-CCeEEEecHHHhhhh-hhc
Confidence 4679999999999999999999999999999999 998 4555543 1 233555543211000 111
Q ss_pred HHHHhhc----cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH-HHH-HHHhhCCCEEEEeCCCCCCCHH
Q 024738 119 ADVAFGL----GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV-AIA-GALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 119 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-~lA-ral~~~p~llllDEPts~LD~~ 192 (263)
+++.... ..++...+ .+.++++. +-.-.++-.+. -....++++ .-+ .+++..|+..+++|++.+.|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~----~i~~~~~~-~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~ 164 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRK----NLEDNVDK-GVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRAD 164 (231)
T ss_dssp TCEEEEEEETTEEEEEECT----THHHHHHH-TCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC-------
T ss_pred CceehhhhhccccCCCCHH----HHHHHHHc-CCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCC
Confidence 1111000 00111111 12233333 11111111000 011113332 111 2345677788889999999887
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEccCcchh-hcCCEEE
Q 024738 193 DQFGVIEAVKNLLGD---SGEVTALWVTHRLEEL-EYADGAF 230 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~---~~~~tiiivtH~~~~~-~~~d~v~ 230 (263)
+.+.+.+.|.....+ .....+++++|+++.+ +.+++++
T Consensus 165 ~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 165 DSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp -------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 777777666543221 1124667777777664 3344443
No 147
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=9.7e-17 Score=148.47 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=104.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEEcCc-----------------eEEEecCCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAG------------LLKPTNGHVYVKRP-----------------KSFVFQNPDH 110 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~p~~G~I~~~~~-----------------~~~v~q~~~~ 110 (263)
.+++|..++|+|+||||||||+|+|+| .+.|+.|.|.+.+. ..++.+.+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 66799999998751 2345555442
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHH---HHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKV---AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC--KVLLLDEL 185 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p--~llllDEP 185 (263)
.... +..+++ .. .....+ ..++..++.. -+..+..+|+++ +| +++++|||
T Consensus 96 ~~~~-s~~e~L---------~~-~fl~~ir~~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGA-STGVGL---------GN-AFLSHVRAVDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCC-CSSSSS---------CH-HHHHHHTTCSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCC-cHHHHH---------HH-HHHHHHHHHHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchhh
Confidence 2211 211111 00 000000 0011111221 134455577664 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhcCCCcEEEEEccCcchh-hcCCEEE-EEeCC-EEEEecCh
Q 024738 186 TTFLDESDQFGVIEAVKNL-LGDSGEVTALWVTHRLEEL-EYADGAF-YMEDG-KIVMQADG 243 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l-~~~~~~~tiiivtH~~~~~-~~~d~v~-~l~~G-~i~~~g~~ 243 (263)
+.++|+....+.++.+... .+ .|.|++ +|....+ +.|+++. +|.+| +++..++.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 43 355653 9999887 5799999 99999 88766543
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.41 E-value=1.6e-13 Score=123.13 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=75.0
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 135 (263)
.++|...+|++++|+|||||||||+++.|++.+.+..|+|.+. ..+.. -+...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv------~~D~~----r~~a~----------------- 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA------AADTF----RAAAI----------------- 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE------EECTT----CHHHH-----------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE------ccccc----cHHHH-----------------
Confidence 3566678999999999999999999999999999888877653 33321 11111
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCCChHHHHHH---HHHHHHhhCCCEEEEeCCCC
Q 024738 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV---AIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 136 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv---~lAral~~~p~llllDEPts 187 (263)
+.+..+++.+++... ..+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 -eqL~~~~~~~gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -EQLKIWGERVGATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -HHHHHHHHHHTCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -HHHHHHHHHcCCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 223345666677532 35689999999 99999999999999999975
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.2e-17 Score=144.06 Aligned_cols=132 Identities=17% Similarity=0.272 Sum_probs=84.8
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-------------eEEEecCCCCcccccCHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP-------------KSFVFQNPDHQVVMPTVE 118 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~-------------~~~v~q~~~~~~~~~tv~ 118 (263)
.++++++|.+++| ++|+||||||||||+|+|+|...+ |.|.+++. ++++||.........++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999876 67777642 223333210000000122
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-----------
Q 024738 119 ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT----------- 187 (263)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts----------- 187 (263)
+++....... . .... . .+....++.+.+|||||+||+.|++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r-----~-~~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 110 DEVDALCPRR-----S-DRET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFV 175 (274)
T ss_dssp ETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEEC
T ss_pred ehhhhhhccc-----C-CCcc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEe
Confidence 2221111000 0 0000 0 1233445667789999999999999999999985 99864
Q ss_pred -CCCHHHHHHHHHHH
Q 024738 188 -FLDESDQFGVIEAV 201 (263)
Q Consensus 188 -~LD~~~~~~l~~~l 201 (263)
--|...+.++++.+
T Consensus 176 ~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 176 GLPPPADRLAILKTI 190 (274)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 34677777666654
No 150
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.39 E-value=6.7e-15 Score=131.50 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=67.6
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cC-------------ceEEEecCCCCcc----------
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KR-------------PKSFVFQNPDHQV---------- 112 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~-------------~~~~v~q~~~~~~---------- 112 (263)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ ++ .++|++|.|....
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999987 32 3689999985321
Q ss_pred -----cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCCh
Q 024738 113 -----VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161 (263)
Q Consensus 113 -----~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 161 (263)
...++ +|+.|+.... ..+...++.++++.++|. +..++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11145 6665542111 123345678999999996 677888888885
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.37 E-value=1e-12 Score=117.29 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=89.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
.+|++++++|||||||||+++.|++.+.+++| .++.++.+++. ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----~~V~lv~~D~~----r~~a~eqL~~------------------ 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----KKIAFITTDTY----RIAAVEQLKT------------------ 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----CCEEEEECCCS----STTHHHHHHH------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CEEEEEecCcc----cchHHHHHHH------------------
Confidence 47999999999999999999999999988888 24566777652 2244444332
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCCcEEEE-EccC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG-DSGEVTALW-VTHR 219 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~~~~~tiii-vtH~ 219 (263)
+.+..|+..... .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+.. ...+.++++ +||.
T Consensus 156 ~~~~~gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 156 YAELLQAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HHTTTTCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHHhcCCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 122233332111 12 2334556664 4999999999 999998766555444332211 111234444 4998
Q ss_pred cchh-hcCCEEEEEeCCEEEEe
Q 024738 220 LEEL-EYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 220 ~~~~-~~~d~v~~l~~G~i~~~ 240 (263)
.+.+ +.++++..+..+.++..
T Consensus 226 ~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEe
Confidence 7776 45776655666777654
No 152
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.37 E-value=1.8e-14 Score=129.25 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=66.2
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cC------------ceEEEecCCCCcccc---cCHHHH
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KR------------PKSFVFQNPDHQVVM---PTVEAD 120 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~------------~~~~v~q~~~~~~~~---~tv~~~ 120 (263)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ ++ ..+|++|.|....+. .++ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 678899999999999999999999999999999999987 32 158999998654321 267 77
Q ss_pred HH--hh-c-------cCCC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 121 VA--FG-L-------GNLN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 121 ~~--~~-~-------~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
+. |+ + ...+ ....+....+.++++.++|.+...+....|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 73 22 1 0111 1112233567889999999875545556777788773
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.35 E-value=3.4e-13 Score=127.65 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=44.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 489999999999 99999999999999999999999999999998853
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.33 E-value=5.3e-12 Score=112.48 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=93.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
+.++++++.|+.. . ++++|+ +|++++++|+|||||||+++.|+|++.+..|+|.+. ..++.
T Consensus 77 ~~~~~l~~~~~~~-----~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~------~~d~~---- 137 (295)
T 1ls1_A 77 TVYEALKEALGGE-----A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV------AADTQ---- 137 (295)
T ss_dssp HHHHHHHHHTTSS-----C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE------ECCSS----
T ss_pred HHHHHHHHHHCCC-----C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe------cCCcc----
Confidence 5667788888542 1 688888 999999999999999999999999998888887653 23321
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL-TTFLDES 192 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP-ts~LD~~ 192 (263)
.+...+.+ ..+.+..++.-..... ..+-.+.+|.+|+++...+++++|+||| +.++|..
T Consensus 138 ~~~~~~ql------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 138 RPAAREQL------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp CHHHHHHH------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred cHhHHHHH------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 11111111 1123445665332111 2234456789999998899999999999 9999998
Q ss_pred HHHHHHHHHHHH
Q 024738 193 DQFGVIEAVKNL 204 (263)
Q Consensus 193 ~~~~l~~~l~~l 204 (263)
...++.+.....
T Consensus 198 ~~~~l~~~~~~~ 209 (295)
T 1ls1_A 198 LMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 888888777665
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.33 E-value=1.2e-12 Score=123.15 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=113.1
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH---hhc--
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA---FGL-- 125 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~---~~~-- 125 (263)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..|. .+.|+.-+.. ...+...+. ++.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-----~Vl~~s~E~s----~~~l~~r~~~~~~~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-----NVAIFSLEMS----AQQLVMRMLCAEGNINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-----CEEEEESSSC----HHHHHHHHHHHHHTCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-----cEEEEECCCC----HHHHHHHHHHHHcCCCH
Confidence 35789998889999999999999999999999999876554441 2333332211 001111110 110
Q ss_pred ---cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------HH
Q 024738 126 ---GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD--------ES 192 (263)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD--------~~ 192 (263)
....+... ...++.++++.++..+..-.....+|.++.+ +.++.+. ++|+++++|+++.-.+ ..
T Consensus 261 ~~l~~g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~ 337 (454)
T 2r6a_A 261 QNLRTGKLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQ 337 (454)
T ss_dssp HHHHTSCCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHH
T ss_pred HHHhcCCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHH
Confidence 01123322 2345556666665444333335689999987 5666666 7899999999998774 33
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcc---------C--cc--------hhh-cCCEEEEEeCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTH---------R--LE--------ELE-YADGAFYMEDGKI 237 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH---------~--~~--------~~~-~~d~v~~l~~G~i 237 (263)
....+.+.|+.++++ .+++||+++| + +. .++ .||.|++|..++.
T Consensus 338 ~i~~i~~~Lk~lAke-~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 338 EVSEISRSLKALARE-LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHH-hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 446777788888765 3689999999 2 32 343 5999999987764
No 156
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.31 E-value=4.5e-12 Score=108.13 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=88.5
Q ss_pred cceece-eeEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 52 PILRDC-SFSVPSGQLWMLLGPNGCGKSTLL-KVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 52 ~iL~~v-sl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
+.|+.+ .--+++|++++|.||||||||||+ +++.+..+...+.+ |+..+.. ...+.+.+. ..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~-------~~~~e~~----~~~~~~~~~----~~g 74 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI-------YVALEEH----PVQVRQNMA----QFG 74 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE-------EEESSSC----HHHHHHHHH----TTT
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE-------EEEccCC----HHHHHHHHH----HcC
Confidence 457776 667999999999999999999995 45555544333322 2222211 001222211 112
Q ss_pred CChHHHHHHHHHHHH-------HcCCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHH
Q 024738 130 LTHDEVRSKVAKALD-------AVGMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFL--DESDQFGVI 198 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~-------~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~L--D~~~~~~l~ 198 (263)
...++.... .-+. .++.....+.....-+....+....++.++ .+|+++++|+|++.+ |+....+++
T Consensus 75 ~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 75 WDVKPYEEK--GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp CCCHHHHHH--TSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred CCHHHHhhC--CcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 221111000 0000 000000000111111122223333334333 689999999999988 665555666
Q ss_pred HHHHHHHhcCCCcEEEEEccCcch--------h-hcCCEEEEEeC
Q 024738 199 EAVKNLLGDSGEVTALWVTHRLEE--------L-EYADGAFYMED 234 (263)
Q Consensus 199 ~~l~~l~~~~~~~tiiivtH~~~~--------~-~~~d~v~~l~~ 234 (263)
..+.+++++ .|+|||+++|.... + ..||.++.|+.
T Consensus 153 ~~l~~~~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 153 LQLKRVLAG-TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHH-TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHH-CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 666666554 46899999998765 3 46899999974
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.29 E-value=1.7e-14 Score=137.34 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=98.5
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEEc--CceEEEecCCCCcccc-cCHHHHHHhhccCCC
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVK--RPKSFVFQNPDHQVVM-PTVEADVAFGLGNLN 129 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~--~~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~ 129 (263)
+.+++++.++..+.|.|++||||||+++.|.. +.+++.|++.+. ...+.-++.....+.. .+|..+.........
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALR 237 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHH
Confidence 35788999999999999999999999999876 556666766542 1111111111100000 011111111111011
Q ss_pred CChHHHHHHHHHHHHHcCCCcccC---CCCCCCChHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCHHHHH
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQ---RPVQTLSGGQKQRV----------AIAGALAEACK-VLLLDELTTFLDESDQF 195 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgGqkqRv----------~lAral~~~p~-llllDEPts~LD~~~~~ 195 (263)
+...+.+++. +++...|+.+... +....+|+||+|+. .+|+++...|. ++++||+++-+|.. ..
T Consensus 238 ~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~ 315 (512)
T 2ius_A 238 WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GK 315 (512)
T ss_dssp HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hH
Confidence 1234555554 6788888865432 22245788887752 35666777888 89999999988843 34
Q ss_pred HHHHHHHHHHhcC--CCcEEEEEccCcc
Q 024738 196 GVIEAVKNLLGDS--GEVTALWVTHRLE 221 (263)
Q Consensus 196 ~l~~~l~~l~~~~--~~~tiiivtH~~~ 221 (263)
.+.+.|.++++.. -|.++|++||++.
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 4556666554432 2789999999987
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.21 E-value=5.3e-12 Score=104.50 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=73.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEEcCc-eEE-EecCCCCcccccCHHHHHHhh---ccCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKP-----------TNGHVYVKRP-KSF-VFQNPDHQVVMPTVEADVAFG---LGNLN 129 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~~~-~~~-v~q~~~~~~~~~tv~~~~~~~---~~~~~ 129 (263)
.++|+|+||||||||++.++|...+ ++|+|.+++. +.+ +...+....+...+....... +-.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999998765 5788888764 221 122221111111112211110 00011
Q ss_pred CChHHHHHHHHHHHH---H-c--CCC--cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024738 130 LTHDEVRSKVAKALD---A-V--GMS--NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~---~-~--~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l 201 (263)
.......+.+..+++ . . +.. ...++ ..|..-..+.+.+|++++.+|+++++| ||++|..+..++++.|
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTI 186 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHH
Confidence 111111111111221 1 1 100 01111 012111223467899999999999999 9999999999999888
Q ss_pred HHH
Q 024738 202 KNL 204 (263)
Q Consensus 202 ~~l 204 (263)
.+.
T Consensus 187 ~~~ 189 (191)
T 1oix_A 187 LTE 189 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.20 E-value=7.5e-13 Score=110.27 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=35.4
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ceEEEecCCC
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PKSFVFQNPD 109 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~ 109 (263)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+ .++|+||++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDET 61 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHH
Confidence 57889999999999999999999999999974 344321 3578888754
No 160
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.13 E-value=8.9e-11 Score=106.95 Aligned_cols=143 Identities=17% Similarity=0.332 Sum_probs=85.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
-+++|+++.|.||||||||||+..++.......|. +.|+.-+.. +. ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~------vlyi~~E~~---~~-~~~--------------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI------AAFIDAEHA---LD-PEY--------------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------EEEEESSCC---CC-HHH---------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe------EEEEECCCC---cC-HHH---------------------
Confidence 57899999999999999999987777554333333 334443321 11 010
Q ss_pred HHHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHH
Q 024738 140 AKALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALAEA--CKVLLLDELTTFL----------DE---SDQFGVIEAV 201 (263)
Q Consensus 140 ~~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~~~--p~llllDEPts~L----------D~---~~~~~l~~~l 201 (263)
.+.+|+. .. ... ..+. .|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+
T Consensus 106 ---a~~lG~~~~~l~i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 106 ---AKKLGVDTDSLLVSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp ---HHHTTCCGGGCEEEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred ---HHHcCCCHHHeEEec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 1112221 00 111 1232 3445678888755 9999999999998 33 1222344444
Q ss_pred HHH---HhcCCCcEEEEEccCcc----------------hhh-cCCEEEEEeCCEEEEecC
Q 024738 202 KNL---LGDSGEVTALWVTHRLE----------------ELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 202 ~~l---~~~~~~~tiiivtH~~~----------------~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
+++ +++ .++|||+++|... .++ +||.++.++.++++..|+
T Consensus 178 ~~L~~~a~~-~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 178 RKMTGALNN-SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHH-HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHH-hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 444 343 3689999999653 144 599999998876654443
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.13 E-value=6.9e-14 Score=122.93 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=83.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
..+++++.+.|++. .++++++|++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 49 ~~~l~~l~~~~~~~-----~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 49 KEELKEIVEFLKNP-----SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp HHHHHHHHHHHHCH-----HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHHHHCH-----HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHH
Confidence 45567777777542 5899999999999 99999999999999999999875 78888753
Q ss_pred ceEEEecCCCCcccccCHHHHHH-hhccCCC---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVA-FGLGNLN---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++++||.........++.+++. ++..... ....+..+.+.+++ .+|||||+||+.+++|+..
T Consensus 120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecC
Confidence 13455664321111113344442 2211100 01112222333332 3589999999999999999
Q ss_pred CCCEEEEeCCC
Q 024738 176 ACKVLLLDELT 186 (263)
Q Consensus 176 ~p~llllDEPt 186 (263)
+|++ +|++.
T Consensus 187 ~p~~--ld~~l 195 (278)
T 1iy2_A 187 RPDI--LDPAL 195 (278)
T ss_dssp CTTS--SCHHH
T ss_pred Cchh--CCHhH
Confidence 9987 67653
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.11 E-value=5.8e-14 Score=121.51 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=85.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
...+++++.+.|++. .+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 24 ~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 24 AKEELKEIVEFLKNP-----SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp HHHHHHHHHHHHHCH-----HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHHHHCH-----HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHH
Confidence 356777888777542 5899999999999 99999999999999999999875 68887753
Q ss_pred -ceEEEecCCCCcccccCHHHHH-HhhccCCC---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADV-AFGLGNLN---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~-~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++++||.........++.+++ .++..... ....+..+.+.+++ .+|||||+||+.+++|+.
T Consensus 95 ~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEcc
Confidence 1345555432111111333444 22211100 01122222233333 357899999999999999
Q ss_pred hCCCEEEEeCCCC
Q 024738 175 EACKVLLLDELTT 187 (263)
Q Consensus 175 ~~p~llllDEPts 187 (263)
.+|++ +|++.-
T Consensus 162 ~~p~~--ld~~l~ 172 (254)
T 1ixz_A 162 NRPDI--LDPALL 172 (254)
T ss_dssp SCGGG--SCGGGG
T ss_pred CCchh--CCHHHc
Confidence 99987 677654
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.07 E-value=1.2e-11 Score=120.18 Aligned_cols=161 Identities=18% Similarity=0.143 Sum_probs=99.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEcC--------ceEEE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-GHVYVKR--------PKSFV 104 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-G~I~~~~--------~~~~v 104 (263)
+.-++++.-|+.. .+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+.+ .++++
T Consensus 35 ~rp~~l~~i~G~~-----~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 35 VPEKLIDQVIGQE-----HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp CCSSHHHHCCSCH-----HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ccccccceEECch-----hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 3334555556543 58999999999999999999999999999999999999887 7776632 35555
Q ss_pred ecCCCCcccccCHHH----------------------HHHhhccCCCCCh-HHHHHHHHHHHHHcCCCcccCCCCCCCCh
Q 024738 105 FQNPDHQVVMPTVEA----------------------DVAFGLGNLNLTH-DEVRSKVAKALDAVGMSNYLQRPVQTLSG 161 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~----------------------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 161 (263)
++...... ....+. |+... +..... ...........+.+|.-+........+|+
T Consensus 110 p~g~~~~~-~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~--~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 110 PACQGRRI-VEKYREKAKSQESVKSSNMRLKSTVLVPKLLVD--NCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp ETTHHHHH-HHHHHHHHHHHTCC-----------CCCEEEEC--CTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred ecchHHHH-HHHHHHhhccchhhhhhcccccccccccceeec--cccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 55321000 000000 00000 000000 00000000011222322222233467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
|++|++..++....++.+|++||... |++..+..+++.|.+
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999999988 899999988888875
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.02 E-value=4.5e-12 Score=108.96 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=42.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.|+++|+...|+ . +|+|.+ ++++|+|||||||||||++|+|++.|++|+|.+++
T Consensus 9 ~l~l~~~~~~~~--------~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE--------E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC--------C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 688888866552 1 456666 89999999999999999999999999999987753
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.01 E-value=1.6e-10 Score=95.72 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
...|++++.+|+++++| ||++|..+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.00 E-value=2.9e-10 Score=104.17 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEEcCceEEEecCCCCccccc--CH------HHHHH
Q 024738 63 SGQL-WMLLGPNGCGKSTLLKVLAGLLK-----------PTNGHVYVKRPKSFVFQNPDHQVVMP--TV------EADVA 122 (263)
Q Consensus 63 ~Ge~-~~l~G~NGsGKSTLlk~i~Gl~~-----------p~~G~I~~~~~~~~v~q~~~~~~~~~--tv------~~~~~ 122 (263)
.|-. ++|+|++|||||||++.|+|... |+.|.|.+++..-.+.+.+......+ .+ .+.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 3444 99999999999999999999875 56788888764322333332111100 11 11111
Q ss_pred h------hccCCCCC--hHHHHHHHHHHHHHcCCCccc----CCCCCCCChHHHHHHHHH----HHH-hhCCCEEEEeCC
Q 024738 123 F------GLGNLNLT--HDEVRSKVAKALDAVGMSNYL----QRPVQTLSGGQKQRVAIA----GAL-AEACKVLLLDEL 185 (263)
Q Consensus 123 ~------~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~----~~~~~~LSgGqkqRv~lA----ral-~~~p~llllDEP 185 (263)
. ........ ..+..+.+.++++.+++.+.. ..++..+|+|++||+.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0 01111111 112223456677777764321 234667898899988877 555 334444 89
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 024738 186 TTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~ 206 (263)
+|++|..+...+++.|.+...
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhc
Confidence 999999999999999988654
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.96 E-value=4.8e-11 Score=103.92 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=35.7
Q ss_pred ceEEEEeE-EEEECCCccccccceeceeeEEeC---CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 32 VAIECSNL-NYSITKKQRKLVPILRDCSFSVPS---GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 32 ~~l~~~nl-~~~y~~~~~~~~~iL~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+++|+ +|+|++. .++|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~----~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE----QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc----chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999322 3699999999999 9999999999999999999999865
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.96 E-value=1.2e-09 Score=103.22 Aligned_cols=117 Identities=23% Similarity=0.283 Sum_probs=77.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
..++++++.+++| +.|+||+|+|||||+|++++.... ..-++ +..+.+ ..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------~f~~i-----------s~~~~~-------~~- 88 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------PFFHI-----------SGSDFV-------EL- 88 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------CEEEE-----------EGGGTT-------TC-
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------CeeeC-----------CHHHHH-------HH-
Confidence 3678888888888 889999999999999999984310 00011 000000 00
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHH
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL----------TTFLDESDQFGVIEAV 201 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP----------ts~LD~~~~~~l~~~l 201 (263)
.. =++++++|..+++|....|.+|++||+ ++|.|......+.+++
T Consensus 89 -----------------------~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL 143 (476)
T 2ce7_A 89 -----------------------FV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL 143 (476)
T ss_dssp -----------------------CT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH
T ss_pred -----------------------Hh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH
Confidence 00 026788899999999999999999999 3467776666666666
Q ss_pred HHHHh--cCCCcEEEEEccCcchh
Q 024738 202 KNLLG--DSGEVTALWVTHRLEEL 223 (263)
Q Consensus 202 ~~l~~--~~~~~tiiivtH~~~~~ 223 (263)
..+-. ...+..||.+||+++.+
T Consensus 144 ~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 144 VEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHhccCCCCCEEEEEecCChhhh
Confidence 65521 12357899999998654
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.95 E-value=1.7e-12 Score=119.44 Aligned_cols=127 Identities=18% Similarity=0.216 Sum_probs=80.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-c----C---ceEEEecCCCCcccccCHHHHHHh
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-K----R---PKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~-~----~---~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|.+.. . + .++++||.... +.+++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~------l~dd~~~ 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV------VFEDVKG 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE------EETTCCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH------HHHHHHH
Confidence 589999999999999999999999999999999995 4677765 1 1 23444543210 0111111
Q ss_pred hcc-CCCCCh-HH--HHHHHHHHHHH---cCCC-------------cccCCCCCCCChHHHHHHHHHHHHhhCCCEEE-E
Q 024738 124 GLG-NLNLTH-DE--VRSKVAKALDA---VGMS-------------NYLQRPVQTLSGGQKQRVAIAGALAEACKVLL-L 182 (263)
Q Consensus 124 ~~~-~~~~~~-~~--~~~~~~~~l~~---~~l~-------------~~~~~~~~~LSgGqkqRv~lAral~~~p~lll-l 182 (263)
... ...... .. ....+...++. +.++ ..++.....+++|++||+..+.+++..|++++ |
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyL 307 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCL 307 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence 110 000100 00 11223333331 1111 23445567899999999999888899999988 9
Q ss_pred eCCCC
Q 024738 183 DELTT 187 (263)
Q Consensus 183 DEPts 187 (263)
|+|+.
T Consensus 308 d~~~~ 312 (377)
T 1svm_A 308 ERSEF 312 (377)
T ss_dssp HTCTH
T ss_pred eCCHH
Confidence 99987
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.88 E-value=1.3e-09 Score=89.07 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=67.1
Q ss_pred ce--eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---------Ec----------CceEEEecCCCCc
Q 024738 53 IL--RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------VK----------RPKSFVFQNPDHQ 111 (263)
Q Consensus 53 iL--~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~---------~~----------~~~~~v~q~~~~~ 111 (263)
.+ ++++|++.+| +++|+||||||||||+++|++++.+..|... .. ..+.++||++...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 56 7899999999 9999999999999999999998877665321 11 1467888876432
Q ss_pred ccc----cCHHHHHHh-hccCCCCC-hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 112 VVM----PTVEADVAF-GLGNLNLT-HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 112 ~~~----~tv~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
+.. .++...+.- +...+... .......+.++++.+++... .+.-++.|+.++++
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~---~~~~~~qg~~~~l~ 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPD---GYNIVLQGDITKFI 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTT---CTTEECTTCTTHHH
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCC---CCEEEEcccHHHHH
Confidence 111 011100000 00000000 01113557788888888742 12346777777664
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.86 E-value=2.1e-09 Score=107.28 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=89.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
.+..|+.+.|+||+||||||++.++++...+..| .+...++.+ |.. .....+.+.+.-.. +..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl~-P~r-~La~q~~~~l~~~~---~~~-------- 167 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACTQ-PRR-VAAMSVAQRVAEEM---DVK-------- 167 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEEE-SCH-HHHHHHHHHHHHHT---TCC--------
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEecC-chH-HHHHHHHHHHHHHh---CCc--------
Confidence 3568999999999999999999998765544432 111111212 110 00001111111000 000
Q ss_pred HHHHHHcCC----Cc--ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 140 AKALDAVGM----SN--YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-FLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 140 ~~~l~~~~l----~~--~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
+...+|. +. ..+..+..+|.|+.+|..++++++.+++++|+|||.. +||......+++.+..... ...+
T Consensus 168 --v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~--~~~i 243 (773)
T 2xau_A 168 --LGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP--DLKI 243 (773)
T ss_dssp --BTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT--TCEE
T ss_pred --hhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC--CceE
Confidence 0000110 11 1234566789999999999999999999999999996 9998877666666665432 2357
Q ss_pred EEE-EccCcchh-hcCC
Q 024738 213 ALW-VTHRLEEL-EYAD 227 (263)
Q Consensus 213 iii-vtH~~~~~-~~~d 227 (263)
|++ +||+.+.+ ++++
T Consensus 244 Il~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 244 IIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEESCSCCHHHHHHTT
T ss_pred EEEeccccHHHHHHHhc
Confidence 777 49998776 4554
No 172
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.84 E-value=5.4e-10 Score=92.25 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999997
No 173
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.84 E-value=3.1e-09 Score=96.32 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=81.4
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.| .|+.-+ + +
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V------l~fSlE------m-s--------------- 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV------AVFSLE------M-S--------------- 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE------EEEESS------S-C---------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE------EEEeCC------C-C---------------
Confidence 46777776799999999999999999999987766432222222 222111 1 1
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
.++...++......+.+..+.+ ..||.++++|+..|...+.+++++|.|+|...++ .+...++++.++.++.
T Consensus 86 ~~ql~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~~~gg~ 157 (338)
T 4a1f_A 86 AEQLALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKSQHKEL 157 (338)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHHhcCCC
Confidence 2222222222222233333222 4799999999999999999999999999975533 3444555443332146
Q ss_pred EEEEEc
Q 024738 212 TALWVT 217 (263)
Q Consensus 212 tiiivt 217 (263)
.+|+|-
T Consensus 158 ~lIVID 163 (338)
T 4a1f_A 158 GIAFID 163 (338)
T ss_dssp EEEEEE
T ss_pred CEEEEe
Confidence 666664
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.83 E-value=2.9e-09 Score=88.78 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=74.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|+|+|||||||+.++|+++ |...++ .+. +...+. ..+ . ..+.++.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id-------~d~--------~~~~~~----~~~--~----~~~~~i~~~ 53 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVD-------ADV--------VAREVV----AKD--S----PLLSKIVEH 53 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEE-------HHH--------HHHHTT----CSS--C----HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccc-------hHH--------HHHHHc----cCC--h----HHHHHHHHH
Confidence 6899999999999999999993 422221 110 000000 000 0 123445566
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh--
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-- 223 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-- 223 (263)
+|...+ .|.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 54 ~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~----~~~~vv~~~~~l~e~~~ 120 (206)
T 1jjv_A 54 FGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ----TAPYTLFVVPLLIENKL 120 (206)
T ss_dssp HCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC----CSSEEEEECTTTTTTTC
T ss_pred hCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc----CCCEEEEEechhhhcCc
Confidence 665422 3678999999999888887654333 3456677666666555432 134788899988664
Q ss_pred -hcCCEEEEEeC
Q 024738 224 -EYADGAFYMED 234 (263)
Q Consensus 224 -~~~d~v~~l~~ 234 (263)
..||.+++++-
T Consensus 121 ~~~~d~vi~l~~ 132 (206)
T 1jjv_A 121 TALCDRILVVDV 132 (206)
T ss_dssp GGGCSEEEEEEC
T ss_pred HhhCCEEEEEEC
Confidence 46999999864
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.82 E-value=3.2e-09 Score=96.61 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-C--ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-R--PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-~--~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
..-.++|+|++|+|||||++.++|.. +..|...+. . .++.+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~------------------------------ 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF------------------------------ 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc------------------------------
Confidence 45589999999999999999999965 211111000 0 0111111100
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc-
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD-ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT- 217 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD-EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt- 217 (263)
.+..++.....+.++.++|+|++|++. +.+...++-++++| +|.+++|......+++.+.+... +..+|+|.
T Consensus 215 --~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~N 288 (357)
T 2e87_A 215 --RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVIN 288 (357)
T ss_dssp --EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEEC
T ss_pred --eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEE
Confidence 011122223334567789999998876 55556777889999 99999999998888887776532 46778888
Q ss_pred -cCcc
Q 024738 218 -HRLE 221 (263)
Q Consensus 218 -H~~~ 221 (263)
||+.
T Consensus 289 K~Dl~ 293 (357)
T 2e87_A 289 KIDVA 293 (357)
T ss_dssp CTTTC
T ss_pred CcccC
Confidence 8874
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.77 E-value=4.4e-10 Score=93.73 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=42.5
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EEc
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--YVK 98 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I--~~~ 98 (263)
+|+++.++. ..+.+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++
T Consensus 3 ~~~~~~~~~-----~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 3 TNIKWHECS-----VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp -------CC-----CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCcccccc-----cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 466666654 357888999999999999999999999999999999987 67877 554
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.76 E-value=4e-09 Score=87.47 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=30.1
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
+++.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 178
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.74 E-value=5.3e-08 Score=88.02 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=71.1
Q ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH
Q 024738 63 SGQ--LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140 (263)
Q Consensus 63 ~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++..... .+..+ .+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-----~~~~~i~~~~~-----~~~~~------------------~~~ 92 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-----ARFVYINGFIY-----RNFTA------------------IIG 92 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-----CEEEEEETTTC-----CSHHH------------------HHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-----eeEEEEeCccC-----CCHHH------------------HHH
Confidence 456 8999999999999999999998876531 11122221111 01111 111
Q ss_pred HHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Q 024738 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL-AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD-SGEVTALWVTH 218 (263)
Q Consensus 141 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral-~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-~~~~tiiivtH 218 (263)
.++..++.. .+....+.++.........- ..+|.+|++||+... |......+...+.++... ..+.++|++||
T Consensus 93 ~l~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 93 EIARSLNIP----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHTTCC----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHhCcc----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 222223321 11122333332222111111 245889999999876 888877777777554320 02578999999
Q ss_pred Ccch
Q 024738 219 RLEE 222 (263)
Q Consensus 219 ~~~~ 222 (263)
+.+.
T Consensus 168 ~~~~ 171 (389)
T 1fnn_A 168 NDAV 171 (389)
T ss_dssp STHH
T ss_pred CchH
Confidence 8854
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.73 E-value=3.1e-08 Score=90.29 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=34.8
Q ss_pred ceeceee--EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 53 ILRDCSF--SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 53 iL~~vsl--~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
.|+.+-= =+++|+++.|.||+|||||||+..+++...+..|.|
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4544422 488999999999999999999999999877766655
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.72 E-value=4.3e-09 Score=95.76 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=81.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEEcCc-------------eEEEecCCCCcc-ccc
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVKRP-------------KSFVFQNPDHQV-VMP 115 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~~~-------------~~~v~q~~~~~~-~~~ 115 (263)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.... .+...+.+...+ .+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 48999999998 899999999999999999999 66777776643221 111111111000 000
Q ss_pred CHHHHHH-----hhccCCCCChHHHHHHH----HHHHHHcCCCcccC-CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 116 TVEADVA-----FGLGNLNLTHDEVRSKV----AKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 116 tv~~~~~-----~~~~~~~~~~~~~~~~~----~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
.+.+.+. ......+++.....-.+ ..-+..+++....+ ....+.+..++|+..+++..+.+|+++|+.-.
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~ 181 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAIS 181 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEee
Confidence 1111110 00000000000000000 00000111111111 11234678899999999999999998888754
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.+..|... ...+++++.+... +..+|+++|.
T Consensus 182 ~~~~~~~~-~~~~~l~~~~~~~-~~~~i~V~nK 212 (360)
T 3t34_A 182 PANQDLAT-SDAIKISREVDPS-GDRTFGVLTK 212 (360)
T ss_dssp ETTSCGGG-CHHHHHHHHSCTT-CTTEEEEEEC
T ss_pred cccCCcCC-HHHHHHHHHhccc-CCCEEEEEeC
Confidence 44455443 3445566665332 2357777776
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.68 E-value=3.2e-10 Score=107.85 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
.+.+++++...|.+. .+++++++.+++| +.|+||||+|||||+|+|++... .+.|.+++.
T Consensus 39 ~k~~l~~lv~~l~~~-----~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 39 AKEELKEIVEFLKNP-----SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp HHHHHHHHHHHHHCG-----GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHH
T ss_pred HHHHHHHHHHHhhch-----hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHH
Confidence 345666666656442 4789999999999 99999999999999999999874 577777531
Q ss_pred --eEEEecCCCCcccccCHHHHHHhhccCCC----CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 101 --KSFVFQNPDHQVVMPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 101 --~~~v~q~~~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
+..+||..........+.+++........ ....+..+.+.+++. +||||++|+..+++|..
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEec
Confidence 23445543211000122233321111111 112233334444443 36788888888899999
Q ss_pred hCCCEEEEeCCCCC
Q 024738 175 EACKVLLLDELTTF 188 (263)
Q Consensus 175 ~~p~llllDEPts~ 188 (263)
++|++ |||+.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 8888753
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.61 E-value=1e-08 Score=84.08 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEE
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVY 96 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~ 96 (263)
.+|++++|+||||||||||+++|++..++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998864 455553
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.61 E-value=1.4e-08 Score=84.57 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=30.0
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
+..++.++|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 334567899999999999999999999999987 7777754
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=2e-08 Score=83.47 Aligned_cols=38 Identities=29% Similarity=0.180 Sum_probs=24.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999765
No 185
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.55 E-value=1.1e-08 Score=88.62 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=33.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEE
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLA---GLLKPTNGHVY 96 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~p~~G~I~ 96 (263)
++|++++|+|||||||||++|+|+ |+..|++|.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 789999999999999999999999 99999999997
No 186
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.51 E-value=1.5e-08 Score=91.12 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999977554
No 187
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.50 E-value=1.6e-08 Score=97.18 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=45.7
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
-++++.+.|.. ..++.++++++ +|++++|+||||||||||+|+|++.+.+..|.|.+
T Consensus 85 G~~~vk~~i~~-----~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 85 GLEKVKERILE-----YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp SCHHHHHHHHH-----HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred cHHHHHHHHHH-----HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 34555555543 24788999998 89999999999999999999999999887776654
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.48 E-value=2.5e-08 Score=85.01 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=33.8
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
+-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 33446689999999999999999999999998 67777654
No 189
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.48 E-value=1.5e-08 Score=91.11 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=73.2
Q ss_pred cceeceeeEEeCCC------EEEEECCCCCcHHHHHHHHhCCCC--CCceEEEEcCceEEEecCCCCcccccCHHHHHHh
Q 024738 52 PILRDCSFSVPSGQ------LWMLLGPNGCGKSTLLKVLAGLLK--PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge------~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
..|++++..|.+++ ++||+||||||||||+++|++++. |++|.| +++.++... ......+....
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v------~~i~~D~f~--~~~~~l~~~~~ 145 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV------EVITTDGFL--YSNAKLEKQGL 145 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE------EEEEGGGGB--CCHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE------EEEeecccc--cchhhhhhHHH
Confidence 58899999998887 999999999999999999999987 455544 556666421 11111111100
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
....+.........+.+.++.+.-.. ....+ .+|.+..+|+..+...+..|+++|++.|..-.|.
T Consensus 146 -~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 146 -MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp -GGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -HhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 01112211111122333333331111 11111 2344444444323345578999999999887765
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.45 E-value=8.5e-08 Score=80.43 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=27.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999877
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.44 E-value=3.7e-08 Score=82.13 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=34.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 98 (263)
..++|++++|+|+||||||||+++|++++++..|.|.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 467899999999999999999999999998888887653
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.44 E-value=2.2e-07 Score=83.14 Aligned_cols=133 Identities=7% Similarity=0.040 Sum_probs=79.5
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++.-.- ..| ..+.|+.-+ + +.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g-----~~vl~~slE------~-s~------------- 108 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND-----DVVNLHSLE------M-GK------------- 108 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT-----CEEEEEESS------S-CH-------------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC-----CeEEEEECC------C-CH-------------
Confidence 356888876799999999999999999999877764221 112 122222211 1 11
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~ 210 (263)
++...++......+.+..+.+.. ..||.++++|+..|...+.++++++.|+|... . ..+...++++.++ .+
T Consensus 109 --~~l~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i~~~i~~l~~~-~~ 179 (315)
T 3bh0_A 109 --KENIKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYIWSKTRQTKRK-NP 179 (315)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHHHHHHHHHHHT-SS
T ss_pred --HHHHHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHHHHHHHHHHHh-cC
Confidence 12222222222222222222111 23899999999999999989999999998644 2 3345555555433 24
Q ss_pred cE--EEEEcc
Q 024738 211 VT--ALWVTH 218 (263)
Q Consensus 211 ~t--iiivtH 218 (263)
.. +|++-|
T Consensus 180 ~~~~lVVID~ 189 (315)
T 3bh0_A 180 GKRVIVMIDY 189 (315)
T ss_dssp SCCEEEEEEC
T ss_pred CCCeEEEEeC
Confidence 56 777755
No 193
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.43 E-value=3.3e-08 Score=88.92 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=40.3
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
+++++|++++|++++|+|+|||||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37899999999999999999999999999999999988888865
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.43 E-value=8.8e-07 Score=82.69 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
++.+++++|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998887776654
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.37 E-value=1.2e-07 Score=79.52 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.8
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999999875
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.35 E-value=2.6e-08 Score=88.56 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=74.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC-CC---ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK-PT---NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~---~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
+.+++|+|++|||||||++.|.|... +. .|+ +.+...+++.++.....+..| .+... ......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~t-Tr~~~~gi~~~~~~~i~~iDT-----------pG~~~-~~~~~l 74 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQT-TRHRIVGIHTEGAYQAIYVDT-----------PGLHM-EEKRAI 74 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSC-CSSCEEEEEEETTEEEEEESS-----------SSCCH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCc-ceeeEEEEEEECCeeEEEEEC-----------cCCCc-cchhhH
Confidence 34899999999999999999999742 11 111 112234555554321111101 11110 000111
Q ss_pred HH--------HHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhc
Q 024738 140 AK--------ALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDESD-QFGVIEAVKNLLGD 207 (263)
Q Consensus 140 ~~--------~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~~~-~~~l~~~l~~l~~~ 207 (263)
.+ .++.+++--+ .+. ..+|.|++ .+++++. ..|.++++ |.+|... +..+.+.+.++.+.
T Consensus 75 ~~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 75 NRLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp HHHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHh
Confidence 11 1111222112 222 22899886 5667776 78889988 8999876 66777888877643
Q ss_pred CC-CcEEEEEccCcchh
Q 024738 208 SG-EVTALWVTHRLEEL 223 (263)
Q Consensus 208 ~~-~~tiiivtH~~~~~ 223 (263)
.+ ...+.+++|+-+.+
T Consensus 146 ~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 146 MNFLDIVPISAETGLNV 162 (301)
T ss_dssp SCCSEEEECCTTTTTTH
T ss_pred cCcCceEEEECCCCCCH
Confidence 21 13566677765543
No 197
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.34 E-value=5.5e-06 Score=70.41 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 94 (263)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47999999999999999999987766653
No 198
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.33 E-value=8.6e-08 Score=92.17 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=35.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE-EcC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVY-VKR 99 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~-~~~ 99 (263)
.+++|++++|+|+||||||||+|+|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 775 554
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.32 E-value=1.5e-07 Score=76.10 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=28.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.+|++++|+|+|||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999875 6666543
No 200
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.32 E-value=5.5e-08 Score=95.52 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=30.7
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEE
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHV 95 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I 95 (263)
|+++++|..++|+|+||||||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456789999999999999999999999976654 56766
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.32 E-value=4.5e-06 Score=73.05 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=71.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
.++..+.|.||+|+|||||++.+++.... . ++.-+.. .
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~~~------~------------------------- 89 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNISAA------S------------------------- 89 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEEST------T-------------------------
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEeeHH------H-------------------------
Confidence 35678999999999999999999985421 0 1100000 0
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc--CC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE----------SDQFGVIEAVKNLLGD--SG 209 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~----------~~~~~l~~~l~~l~~~--~~ 209 (263)
...... -+++++.|..++.+...+|.+|++||+.+-++. .....++..+...... ..
T Consensus 90 ---------l~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 90 ---------LTSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ---------TSSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ---------Hhhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 000000 135677788888888899999999999776553 2233344444433111 12
Q ss_pred CcEEEEEccCcchh-----hcCCEEEEEe
Q 024738 210 EVTALWVTHRLEEL-----EYADGAFYME 233 (263)
Q Consensus 210 ~~tiiivtH~~~~~-----~~~d~v~~l~ 233 (263)
+..||.+|++.+.+ ..+++++.+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 35678888876543 2467665554
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.32 E-value=6.3e-07 Score=83.78 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=34.9
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 175 EACKVLLLDELTTFLDE-SDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 175 ~~p~llllDEPts~LD~-~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
.+|++|++||+..-.+. ..+..++..+..+.. .|..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCC
Confidence 48999999999877664 677788888888754 357889999974
No 203
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.29 E-value=4e-06 Score=75.78 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=83.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
-+++|+++.|.||+|||||||+..++.. .++..|- ..+.+.|+.-+.. +....+.+.. ...+...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~~--~~~~~l~~~~----~~~g~~~~---- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTENT--FRPDRLRDIA----DRFNVDHD---- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSSC--CCHHHHHHHH----HHTTCCHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCCC--CCHHHHHHHH----HHcCCCHH----
Confidence 5789999999999999999999888774 3322110 0122334443321 1000122111 11222221
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHH
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQ-KQRVAIAGALA----EACKVLLLDELTTFLDES------------DQFGVIEA 200 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGq-kqRv~lAral~----~~p~llllDEPts~LD~~------------~~~~l~~~ 200 (263)
++++.+-+. ...+..+ .+.+..++.++ .+++++++|+.++-.... ...+++..
T Consensus 186 ---~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~ 255 (343)
T 1v5w_A 186 ---AVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSR 255 (343)
T ss_dssp ---HHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHH
T ss_pred ---HHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 223322111 1123332 24455566665 579999999999866432 13455566
Q ss_pred HHHHHhcCCCcEEEEEccCcch-------------------hh-cCCEEEEEeCC
Q 024738 201 VKNLLGDSGEVTALWVTHRLEE-------------------LE-YADGAFYMEDG 235 (263)
Q Consensus 201 l~~l~~~~~~~tiiivtH~~~~-------------------~~-~~d~v~~l~~G 235 (263)
|+.++++ .+++||+++|-... ++ .+|-+++|+..
T Consensus 256 L~~la~~-~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~ 309 (343)
T 1v5w_A 256 LQKISEE-YNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKG 309 (343)
T ss_dssp HHHHHHH-HTCEEEEEECC-------------------CCTTTTSSSEEEEEEES
T ss_pred HHHHHHH-hCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEc
Confidence 6666654 36899999885421 33 47888888743
No 204
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.26 E-value=1.2e-06 Score=81.56 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=43.8
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
.+++++.|+.. . ++++|+ +|++++++|+|||||||++..|++.+.+..|.|.+
T Consensus 79 ~~~L~~~~~~~-----~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGE-----A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSS-----C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHhCCC-----c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34566667542 1 678888 89999999999999999999999999988888765
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.26 E-value=4.9e-07 Score=75.21 Aligned_cols=42 Identities=24% Similarity=0.128 Sum_probs=35.1
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 57 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
+-=++++|.+++|+|++|||||||+++|++.++ .+.+++|+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~ 55 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDD 55 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGG
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCc
Confidence 334678899999999999999999999999874 356777775
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.24 E-value=3.6e-07 Score=73.54 Aligned_cols=28 Identities=39% Similarity=0.508 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.|++++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999998753
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.23 E-value=1.1e-07 Score=85.87 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=50.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
+++.+++.+.|+. ..+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|+|.+
T Consensus 30 ~ie~~~~~~~~~~-----~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 30 LVESRHPRHQALS-----TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHCCCHHHHHHH-----HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HhhcCCchhhhHH-----HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4666777666654 25889999999999999999999999999999999998887777654
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.20 E-value=8e-07 Score=70.92 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=26.3
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
+.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34566677665 999999999999999999873
No 209
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.18 E-value=8e-06 Score=73.08 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=81.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCC-ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL-LKPT-NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~-~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
-+++|+++.|.||+|||||||+..++.. ..|. .|- ..+.+.|+.-+.. +....+.+.. ...+...+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~--~~~~~l~~~~----~~~g~~~~---- 170 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGT--FRWERIENMA----KALGLDID---- 170 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSC--CCHHHHHHHH----HHTTCCHH----
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCC--CCHHHHHHHH----HHhCCCHH----
Confidence 5899999999999999999999887763 3332 110 0122334433221 0010122111 11222221
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHH
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGG-QKQRVAIAGALA---EACKVLLLDELTTFLDE--------SD----QFGVIEAV 201 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgG-qkqRv~lAral~---~~p~llllDEPts~LD~--------~~----~~~l~~~l 201 (263)
++++.+-+. ...+.. +.+.+..++.++ .+|+++++|+.++-... .. ..+++..|
T Consensus 171 ---~~~~~l~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L 240 (324)
T 2z43_A 171 ---NVMNNIYYI-------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240 (324)
T ss_dssp ---HHHHTEEEE-------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHH
T ss_pred ---HHhccEEEE-------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHH
Confidence 122221111 112333 335667777777 67999999999876532 11 24455566
Q ss_pred HHHHhcCCCcEEEEEccCcch----------------hh-cCCEEEEEeC
Q 024738 202 KNLLGDSGEVTALWVTHRLEE----------------LE-YADGAFYMED 234 (263)
Q Consensus 202 ~~l~~~~~~~tiiivtH~~~~----------------~~-~~d~v~~l~~ 234 (263)
+.++++ .+++||+++|-... ++ .+|.++.++.
T Consensus 241 ~~la~~-~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 241 TRLAEV-YDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHH-HTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHHH-hCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 666554 36899998885421 22 4788888864
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.16 E-value=1.9e-06 Score=86.28 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=28.6
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
|.+++|+.+.|+||||||||||+++|+|.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999999999874
No 211
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.12 E-value=3.7e-07 Score=83.92 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=46.8
Q ss_pred eEEEEeEEEEECCCcccccccee--------------ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILR--------------DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~--------------~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+++.|+.. ..+|+ |+++.+.+|+.++|+||+|||||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~e----r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANS----RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCS----BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCC----ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 47889999999864 35788 999999999999999999999999999999875
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.12 E-value=1.8e-05 Score=73.89 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=95.9
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH---hhccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA---FGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~---~~~~~~ 128 (263)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| ..+.|+.-+.. ...+...+. .+....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~slE~~----~~~l~~R~~~~~~~i~~~ 258 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYSLEMP----AAQLTLRMMCSEARIDMN 258 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEESSSC----HHHHHHHHHHHHTTCCTT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEECCCC----HHHHHHHHHHHHcCCCHH
Confidence 457777756999999999999999999999777764432222 12333322210 001122111 111111
Q ss_pred -----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------
Q 024738 129 -----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDE---------- 191 (263)
Q Consensus 129 -----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~---------- 191 (263)
.++..+ ..++.++++.+.-.+..-.....+|..+. .+.++.+. ++|+++++|..+.-...
T Consensus 259 ~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~ 335 (444)
T 2q6t_A 259 RVRLGQLTDRD-FSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQ 335 (444)
T ss_dssp TCCGGGCCHHH-HHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHH
T ss_pred HHhCCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHH
Confidence 122222 33444444444322221112346777665 34555555 58999999998754432
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCc-------------c------hhh-cCCEEEEEeC
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRL-------------E------ELE-YADGAFYMED 234 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~-------------~------~~~-~~d~v~~l~~ 234 (263)
.....+...|+.++++ .+++||+++|-- . .++ .||.|++|..
T Consensus 336 ~~i~~i~~~Lk~lAke-~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 336 QEIAAISRGLKALARE-LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHHHHHHHHHHHHH-HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1234666777777765 368999999821 1 133 5899999963
No 213
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.11 E-value=1e-06 Score=75.25 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.2
Q ss_pred ceeceeeEEe---CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 53 ILRDCSFSVP---SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 53 iL~~vsl~i~---~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4677777776 8999999999999999999999999887 65554
No 214
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.10 E-value=3.4e-07 Score=76.95 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEE
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL---KPTNGHVYV 97 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I~~ 97 (263)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999765 677787765
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.05 E-value=4.1e-06 Score=74.04 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=27.1
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+.++..+.|.||+|||||||++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999865
No 216
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.04 E-value=1.1e-06 Score=79.67 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=32.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
+++.+++|+|++|||||||++.|+|...+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 457899999999999999999999988888887765
No 217
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.03 E-value=1.2e-06 Score=71.07 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=29.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEEc
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--HVYVK 98 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G--~I~~~ 98 (263)
.+|++++|+|++||||||++++|++.+++ .| .|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 46899999999999999999999998765 45 44443
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.00 E-value=1.1e-06 Score=74.71 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=67.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
.+.+|+.+++.||+||||||++.++........|. ......+++.|..... .++.+++....... ..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la-~q~~~~~~~~~~~~-~~-------- 138 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISA-VSVAERVAFERGEE-PG-------- 138 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHH-HHHHHHHHHTTTCC-TT--------
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHH-HHHHHHHHHHhccc-cC--------
Confidence 45679999999999999999887765321111111 1234566776642211 14445443221100 00
Q ss_pred HHHHHHcCC----Cccc---CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHH
Q 024738 140 AKALDAVGM----SNYL---QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-FLDESDQFGVIEAVKNL 204 (263)
Q Consensus 140 ~~~l~~~~l----~~~~---~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-~LD~~~~~~l~~~l~~l 204 (263)
..+|. .... +..+--.+.|+..+.. ...+.+.+++++||.-. ++|.......++.+...
T Consensus 139 ----~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 139 ----KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp ----SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ----ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 00111 1110 0112223556666653 33578999999999976 67777664444444443
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.98 E-value=1.8e-05 Score=70.30 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.+..+.|.||+|+|||||++.+++...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876443
No 220
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.97 E-value=2.6e-05 Score=67.68 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.++..+.|.||.|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999999865
No 221
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.95 E-value=4.5e-06 Score=69.80 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=25.6
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34566777764 99999999999999999875
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.88 E-value=2.1e-06 Score=71.84 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=34.6
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEEc
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--HVYVK 98 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G--~I~~~ 98 (263)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45788999999999999999999999999887777 55554
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=3.4e-06 Score=69.63 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999866433
No 224
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.82 E-value=2.1e-05 Score=71.70 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=28.0
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357788888885 99999999999999999886
No 225
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.81 E-value=4e-06 Score=68.40 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=31.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
...+|.+++|+|++||||||+.+.|+..+.+..+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4467999999999999999999999998877666653
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.80 E-value=0.00024 Score=64.55 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=80.6
Q ss_pred cceeceeeE---EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 52 PILRDCSFS---VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~---i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
+.|+.+ |. +++|+++.|.|++|+|||||...++.......+ .+.|+.-+.. +. ...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~------~vlyid~E~s---~~-~~~---------- 107 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHA---LD-PIY---------- 107 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESSCC---CC-HHH----------
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC------eEEEEeCCCC---cc-HHH----------
Confidence 345555 33 889999999999999999999777654322222 2334433221 11 010
Q ss_pred CCChHHHHHHHHHHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHH-----------
Q 024738 129 NLTHDEVRSKVAKALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDES----------- 192 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~~----------- 192 (263)
++.+|++ .+ ..+ +. +. .|-..+++.++ .+++++++|++++-....
T Consensus 108 --------------a~~~g~~~~~l~i~~-~~--~~--e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~ 168 (356)
T 1u94_A 108 --------------ARKLGVDIDNLLCSQ-PD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 168 (356)
T ss_dssp --------------HHHTTCCGGGCEEEC-CS--SH--HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------
T ss_pred --------------HHHcCCChhheeeeC-CC--CH--HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchh
Confidence 0111111 00 001 11 22 33445666664 689999999999876311
Q ss_pred --HHHHHHHHH---HHHHhcCCCcEEEEEccCcc----------------hhh-cCCEEEEEeCCEEEEe
Q 024738 193 --DQFGVIEAV---KNLLGDSGEVTALWVTHRLE----------------ELE-YADGAFYMEDGKIVMQ 240 (263)
Q Consensus 193 --~~~~l~~~l---~~l~~~~~~~tiiivtH~~~----------------~~~-~~d~v~~l~~G~i~~~ 240 (263)
..+.+.+.+ ..++++ .+++||+++|-.. .++ +||-++.+...+....
T Consensus 169 ~~q~r~~~~~l~~L~~~a~~-~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~ 237 (356)
T 1u94_A 169 GLAARMMSQAMRKLAGNLKQ-SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 237 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeecc
Confidence 112233333 333443 3689999988432 233 5888888876654433
No 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.80 E-value=1.7e-06 Score=78.90 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=36.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
.+.+.|++..|+++ .++++++|+| +|+|++|+|||||++.|.|...+..|
T Consensus 17 ~v~~~~l~~~~~~k-----~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVHRK-----SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHHTH-----HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhCCe-----eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 68899999888753 4789999987 99999999999999999987655444
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.80 E-value=1e-05 Score=66.18 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=26.6
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 229
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.78 E-value=6.3e-06 Score=67.92 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=37.2
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEEcC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--------LKPTNGHVYVKR 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~p~~G~I~~~~ 99 (263)
.+++++||..++++ ++|+|++|||||||++.+.+- ..++.+.+.+++
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 58999999988874 789999999999999999872 233456666655
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.78 E-value=2.8e-06 Score=75.48 Aligned_cols=55 Identities=22% Similarity=0.117 Sum_probs=43.4
Q ss_pred EEEeEEEEECCCccccccceec-eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 35 ECSNLNYSITKKQRKLVPILRD-CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
-.+++.+.|+.. .++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+
T Consensus 76 ~~~~l~~~~~~~-------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 76 VYDELSNLFGGD-------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHHTTCS-------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhccc-------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 345566666542 146 888876 9999999999999999999999999887777754
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.77 E-value=2.2e-05 Score=65.63 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999987654
No 232
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.74 E-value=1.1e-05 Score=66.66 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.72 E-value=3.4e-05 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=20.4
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998877 678999999999999999997
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.72 E-value=1.4e-05 Score=66.29 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
No 235
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.67 E-value=5.2e-05 Score=70.55 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=29.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEEcCc
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK------------PTNGHVYVKRP 100 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~------------p~~G~I~~~~~ 100 (263)
.++|+|+||||||||++.|+|... |.+|.+.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 799999999999999999999854 66788888764
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.67 E-value=9.6e-05 Score=58.64 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 237
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.64 E-value=2.2e-05 Score=63.18 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 238
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.63 E-value=2.7e-05 Score=64.49 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=32.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
.+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP---PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC---CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC---CCceEEEEEeCChHhC
Confidence 4678999999755 7888777777666542 2356788888887654
No 239
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.63 E-value=2.7e-05 Score=71.74 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEEcC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL-----------LKPTNGHVYVKR 99 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~p~~G~I~~~~ 99 (263)
.+..|..++|+|+||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567888999999999999999999998 667888887643
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=6.6e-05 Score=60.43 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|||||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=4.4e-06 Score=74.91 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=37.3
Q ss_pred cceeceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 52 PILRDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998755444
No 242
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.62 E-value=7.8e-06 Score=74.32 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=34.1
Q ss_pred cceeceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Q 024738 52 PILRDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999999864
No 243
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.60 E-value=2.1e-05 Score=70.48 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
No 244
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.59 E-value=3.3e-05 Score=62.56 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.++|+|++|||||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 48999999999999999999975443
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.53 E-value=3.4e-05 Score=63.61 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 246
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=2.8e-05 Score=69.14 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
++.++++|| ...+++.....+.+.+.+.. ....+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~---~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS---GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT---TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC---CCceEEEEeCchhh
Confidence 567999999 78899998888888887753 23457777777764
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.50 E-value=4.4e-05 Score=61.83 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 248
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.47 E-value=5.6e-05 Score=64.13 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999999973
No 249
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=4.2e-05 Score=65.49 Aligned_cols=35 Identities=34% Similarity=0.611 Sum_probs=25.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666666 88999999999999999998753
No 250
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.44 E-value=0.0008 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+...+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456779999999999999999999764
No 251
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.42 E-value=0.0013 Score=55.79 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
....-+.|.||.|+|||||++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998854
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.40 E-value=3.7e-05 Score=62.88 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=23.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.+++|+|++|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999876543
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.39 E-value=3e-05 Score=66.52 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.39 E-value=5.3e-05 Score=69.21 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-------------hcCCEEEEEeCC
Q 024738 176 ACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-------------EYADGAFYMEDG 235 (263)
Q Consensus 176 ~p~llllDEPts~LD---~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-------------~~~d~v~~l~~G 235 (263)
.|.++++||-=.-++ +.....+.+.+++.++ .|..++++||++..+ +.|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk--~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK--YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG--GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh--hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 588999999988884 6677777888887644 367899999999764 246777777654
No 255
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.39 E-value=0.00033 Score=60.01 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999999653
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.37 E-value=4.2e-05 Score=65.77 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=32.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 98 (263)
++.+.+ ...++.++.|+|++||||||+.+.|+..+. .+.+.++
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~ 64 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIID 64 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEEC
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEe
Confidence 344444 567889999999999999999999998764 2344444
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.36 E-value=9.9e-05 Score=58.61 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.34 E-value=0.00013 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998653
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.33 E-value=0.0016 Score=59.27 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=75.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
-+++|+++.|.||.|+|||||...++.-.....+ .+.|+.-+.. +. ...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~------~vlyi~~E~s---~~-~~~--------------------- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAEHA---LD-PVY--------------------- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESSCC---CC-HHH---------------------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC------eEEEEECCCC---hh-HHH---------------------
Confidence 4789999999999999999998665542211122 3344443321 11 110
Q ss_pred HHHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC---H----------HHHHHHHHHH
Q 024738 140 AKALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD---E----------SDQFGVIEAV 201 (263)
Q Consensus 140 ~~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD---~----------~~~~~l~~~l 201 (263)
++.+|++ .. ..+ + -+ + .+-+.+++.++ .+++++|+|..++=.- . ...+.+.+.+
T Consensus 119 ---a~~~g~d~~~l~i~~-~--~~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~l 190 (366)
T 1xp8_A 119 ---ARALGVNTDELLVSQ-P--DN-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQAL 190 (366)
T ss_dssp ---HHHTTCCGGGCEEEC-C--SS-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHH
T ss_pred ---HHHcCCCHHHceeec-C--Cc-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHH
Confidence 1112221 11 111 1 12 2 24455666665 5799999999886541 0 1113344445
Q ss_pred HHH---HhcCCCcEEEEEccCcch----------------hh-cCCEEEEEeCCE
Q 024738 202 KNL---LGDSGEVTALWVTHRLEE----------------LE-YADGAFYMEDGK 236 (263)
Q Consensus 202 ~~l---~~~~~~~tiiivtH~~~~----------------~~-~~d~v~~l~~G~ 236 (263)
+++ +++ .+++||+++|-... ++ .||.++.+..++
T Consensus 191 r~L~~~a~~-~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 191 RKLTAILSK-TGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHHTT-TCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHH-cCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 444 444 46888888885321 23 488888887554
No 260
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.0037 Score=55.54 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455779999999999999999999865
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.28 E-value=0.00015 Score=58.50 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998743
No 262
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.26 E-value=0.0026 Score=59.93 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=74.0
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEEcCceEEEecCCCCcccccCHHHHH-HhhccCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADV-AFGLGNLNL 130 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~-~~~~~~~~~ 130 (263)
-|+.+---+.+|+++.|.|+.|+|||||+--++- .... .| ..+.|+.-+.. ...+...+ .... ....
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g-----~~vl~~s~E~s----~~~l~~r~~~~~~-~~~~ 299 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MG-----KKVGLAMLEES----VEETAEDLIGLHN-RVRL 299 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SC-----CCEEEEESSSC----HHHHHHHHHHHHT-TSCC
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cC-----CcEEEEeccCC----HHHHHHHHHHHHc-CCCh
Confidence 4555543589999999999999999999755543 3322 12 12333332211 00122221 1111 1111
Q ss_pred Ch------HHH-HHHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------H
Q 024738 131 TH------DEV-RSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD--------E 191 (263)
Q Consensus 131 ~~------~~~-~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD--------~ 191 (263)
.. ... .+...++.+.+ ...-+....+.+++-.+ -+..++.+. .+|+++++|= ...+. .
T Consensus 300 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~--i~~~i~~~~~~~~~~lvVID~-l~~l~~~~~~~~~~ 376 (503)
T 1q57_A 300 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDH-ISIVVSASGESDER 376 (503)
T ss_dssp TTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHH--HHHHHHHHHHTTCCSEEEEEC-TTCCCSCCSCCCHH
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHH--HHHHHHHHHHhcCCCEEEEcc-chhcCCCCCCCCHH
Confidence 10 000 01111122222 11112222333345443 344445544 4799999994 33332 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
....++...|+.++++ .+++||+++|--
T Consensus 377 ~~~~~~~~~Lk~lak~-~~i~vi~~~q~~ 404 (503)
T 1q57_A 377 KMIDNLMTKLKGFAKS-TGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHHHHHH-HTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHH-HCCeEEEEEcCC
Confidence 2334567777777765 468999998843
No 263
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.25 E-value=0.00014 Score=60.66 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00019 Score=56.71 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVL 84 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i 84 (263)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.19 E-value=0.00016 Score=58.69 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999997643
No 266
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.18 E-value=4.5e-05 Score=63.06 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
+++|.|++||||||+++.|+..+.+....|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775433333
No 267
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.00022 Score=58.24 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 268
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.16 E-value=0.00043 Score=59.91 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEEcCceEEEecCCCCccccc-CHHHHHH--hhc-cC---
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKP-----------TNGHVYVKRPKSFVFQNPDHQVVMP-TVEADVA--FGL-GN--- 127 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~~~~~~v~q~~~~~~~~~-tv~~~~~--~~~-~~--- 127 (263)
.++|+|++|||||||++.++|...+ ..|.+.+.+....+.+.|..+.+.. +..+.+. +.. ..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 84 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADV 84 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcE
Confidence 4899999999999999999997531 1233444454555666665443332 2222111 000 00
Q ss_pred ----CCCCh-HHHHHHHHHHHHHcC-CC-----cccC----CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 024738 128 ----LNLTH-DEVRSKVAKALDAVG-MS-----NYLQ----RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 128 ----~~~~~-~~~~~~~~~~l~~~~-l~-----~~~~----~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~ 192 (263)
..... ........++. ..+ .. ...| +....-....++++ +.+++ |+|+.+..
T Consensus 85 vi~v~D~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~----~~Sa~~g~ 151 (271)
T 3k53_A 85 IVDIVDSTCLMRNLFLTLELF-EMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVI----PTNAKKGE 151 (271)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH-HTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEE----ECBGGGTB
T ss_pred EEEEecCCcchhhHHHHHHHH-hcCCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEE----EEEeCCCC
Confidence 00111 11111122222 223 21 0111 11222233333333 23444 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGA 229 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v 229 (263)
+..++++.+.+..... ..+..+.+|..+.++ .++++
T Consensus 152 gi~~l~~~i~~~~~~~-~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 152 GVEELKRMIALMAEGK-VTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp THHHHHHHHHHHHHTC-CCCCCCCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-ccCCCCCcCCCHHHHHHHHHH
Confidence 9999999998876542 334456677766553 34443
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.16 E-value=0.00018 Score=61.89 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 270
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00014 Score=58.74 Aligned_cols=26 Identities=38% Similarity=0.301 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++.++.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999843
No 271
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.14 E-value=0.00019 Score=57.63 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.12 E-value=0.0033 Score=67.26 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=27.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
+++|+++.|.||+|+|||||+..++.......|
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 899999999999999999999888776543333
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.12 E-value=0.00029 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 274
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.11 E-value=0.0012 Score=59.29 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.9
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
--+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678889999999999999999988875
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.11 E-value=0.00029 Score=56.93 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997643
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.10 E-value=0.006 Score=56.88 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999998877654
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.09 E-value=0.00026 Score=58.50 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999887543
No 278
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.07 E-value=0.00061 Score=63.63 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=28.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
+-|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35666554589999999999999999999765554
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.07 E-value=0.00031 Score=56.07 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 280
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.04 E-value=0.00045 Score=62.88 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC-----------CCCCCceEEEEcC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAG-----------LLKPTNGHVYVKR 99 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~G-----------l~~p~~G~I~~~~ 99 (263)
|-.++|+|.+|+|||||++.|+| -+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3456778777643
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00029 Score=57.52 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999985
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.00034 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
No 283
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00036 Score=56.63 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 284
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00037 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 285
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.00 E-value=0.00022 Score=62.34 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=33.4
Q ss_pred ceeceeeEEeCC-----------CEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 53 ILRDCSFSVPSG-----------QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 53 iL~~vsl~i~~G-----------e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
+++.+...+..+ ..+.|.||+|+|||||+++|++...+..|.+
T Consensus 25 ~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 25 AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 455555555543 5899999999999999999999887766644
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.98 E-value=0.00031 Score=61.69 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 98 (263)
-..|.++.|.||+||||||+.+.|+.-++ .|.+.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 34578999999999999999999986442 2445443
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.0004 Score=56.11 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+.+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998753
No 288
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.97 E-value=0.00041 Score=57.11 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..+|.+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999854
No 289
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.95 E-value=0.0034 Score=56.60 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..-+.|.||.|+|||||.+.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344558899999999999999999865
No 290
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.93 E-value=0.00016 Score=58.91 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..+.+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998644
No 291
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.92 E-value=0.00034 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
No 292
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.91 E-value=0.0033 Score=55.65 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..-+.|.||.|+|||+|++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345679999999999999999998753
No 293
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.91 E-value=0.00044 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.90 E-value=0.00046 Score=55.63 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.89 E-value=0.00053 Score=55.64 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.86 E-value=0.00031 Score=57.19 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999887653
No 297
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.85 E-value=0.0042 Score=48.29 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
+..+|++||. ..|++..+..+.+.+.+.. ..+..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAE--RCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHT--TTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCC--CCCEEEEEecC
Confidence 4578999996 4678888888888887642 12345666665
No 298
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.0013 Score=53.17 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHH-hCC----CCCCce
Q 024738 66 LWMLLGPNGCGKSTLLKVL-AGL----LKPTNG 93 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i-~Gl----~~p~~G 93 (263)
.++|+|++|||||||++.+ .+. ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 4889999999999999654 444 456655
No 299
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.80 E-value=0.0094 Score=63.87 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=27.1
Q ss_pred ceeceeeE---EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 53 ILRDCSFS---VPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 53 iL~~vsl~---i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-|+.+ +. +++|.++.|.||.|+|||||.--++.-
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45555 34 889999999999999999998665543
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.00063 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|+.|||||||++.+++-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
No 301
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.79 E-value=0.00082 Score=56.00 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998644
No 302
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.79 E-value=0.00071 Score=58.97 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 303
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.78 E-value=0.0024 Score=60.28 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCCCCCChHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 024738 154 RPVQTLSGGQKQRVAIAGA--LAE---------------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAra--l~~---------------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiiv 216 (263)
+..+.+||||+|-.-+|.+ ++. .-.++++||. +-+|....+..+++++++ |.-+|++
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l-----glQliia 448 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL-----DMQLLIA 448 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc-----CCEEEEE
Confidence 3467899999997444443 322 2357999999 999999999999999987 4677888
Q ss_pred ccCcchhhcCCEEEEEe
Q 024738 217 THRLEELEYADGAFYME 233 (263)
Q Consensus 217 tH~~~~~~~~d~v~~l~ 233 (263)
|=+ ....++|.++.+-
T Consensus 449 tP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE-NISPERGTTYKLV 464 (483)
T ss_dssp ESS-SCCCSSSEEEECC
T ss_pred Ccc-hhhhccCceEEEE
Confidence 877 3336788888775
No 304
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00072 Score=56.68 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.75 E-value=0.0008 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.74 E-value=0.00097 Score=54.67 Aligned_cols=27 Identities=44% Similarity=0.477 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+-+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998643
No 307
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.73 E-value=0.00062 Score=54.75 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
No 308
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.00085 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 309
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.73 E-value=0.0025 Score=54.88 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.72 E-value=0.00066 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998854
No 311
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.72 E-value=0.00087 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
No 312
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.72 E-value=0.00072 Score=52.77 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|||||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.72 E-value=0.00085 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.71 E-value=0.00098 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
No 315
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.70 E-value=0.00076 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.00084 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 317
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0083 Score=55.83 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH--hcCCCcEEEEEccCcchh
Q 024738 168 AIAGALAEACKVLLLDELTTF----------LDESDQFGVIEAVKNLL--GDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~----------LD~~~~~~l~~~l~~l~--~~~~~~tiiivtH~~~~~ 223 (263)
.+..|-...|.+|++||--+- -|......+..+|..+- ....+..||.+|++++.+
T Consensus 266 ~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 344555678999999997532 23444445556666552 122346789999988765
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.69 E-value=0.00092 Score=52.37 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.68 E-value=0.001 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 320
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.68 E-value=0.00082 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.67 E-value=0.0012 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+.-.++|+|+.|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 322
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.67 E-value=0.00077 Score=56.27 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
No 323
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.67 E-value=0.0031 Score=59.51 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+..-+.|.||+|+|||+|++.|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998754
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.65 E-value=0.00087 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999888753
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.65 E-value=0.00075 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.64 E-value=0.00088 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.64 E-value=0.00098 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...+++|.|+.||||||+.+.|+-.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998543
No 328
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.64 E-value=0.00087 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 329
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.64 E-value=0.001 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 330
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.64 E-value=0.00093 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 331
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.63 E-value=0.00092 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.62 E-value=0.0009 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 333
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.61 E-value=0.00094 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999888643
No 334
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.60 E-value=0.0011 Score=57.01 Aligned_cols=25 Identities=44% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.60 E-value=0.00097 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999887743
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.60 E-value=0.00089 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
--.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999853
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.59 E-value=0.00098 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.59 E-value=0.001 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|||||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 339
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.59 E-value=0.0015 Score=58.26 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
..+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 788999999999999999988887
No 340
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.57 E-value=0.00065 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999875
No 341
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.57 E-value=0.00089 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.57 E-value=0.0011 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 343
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.57 E-value=0.015 Score=63.29 Aligned_cols=137 Identities=19% Similarity=0.298 Sum_probs=78.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
+++|.++.|.||.|+|||||+..++.-.....+ .+.|+.-+.. .. .++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~------~vlyis~E~s---~~-~~~---------------------- 427 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHA---LD-PIY---------------------- 427 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC------CEEEECTTSC---CC-HHH----------------------
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC------eEEEEEcCCC---HH-HHH----------------------
Confidence 899999999999999999998666554332222 2333333221 00 111
Q ss_pred HHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHH
Q 024738 141 KALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD-E------------SDQFGVIEAVK 202 (263)
Q Consensus 141 ~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD-~------------~~~~~l~~~l~ 202 (263)
++.+|++ .+ ... ..+. .|-+.+++.++ .+|+++++|.-.+-.. . ...+.+...++
T Consensus 428 --a~~lGvd~~~L~I~~---~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr 500 (2050)
T 3cmu_A 428 --ARKLGVDIDNLLCSQ---PDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (2050)
T ss_dssp --HHHTTCCTTTCEEEC---CSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred --HHHcCCCHHHeEEeC---CCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHH
Confidence 1112221 11 111 1233 33456666664 5799999999876542 1 12233445555
Q ss_pred HH---HhcCCCcEEEEEccCcch----------------hh-cCCEEEEEeCCEE
Q 024738 203 NL---LGDSGEVTALWVTHRLEE----------------LE-YADGAFYMEDGKI 237 (263)
Q Consensus 203 ~l---~~~~~~~tiiivtH~~~~----------------~~-~~d~v~~l~~G~i 237 (263)
.+ +++ .+++||+++|-... ++ .||.++.|+..+.
T Consensus 501 ~L~~lake-~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 501 KLAGNLKQ-SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHHHT-TTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHH-cCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 54 444 47899999884322 33 4888888876553
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.56 E-value=0.0013 Score=54.40 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-+++|+|+.||||||+.+.++-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 345
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.56 E-value=0.001 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.54 E-value=0.0013 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997743
No 347
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.53 E-value=0.00099 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998875
No 348
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.52 E-value=0.0014 Score=58.01 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.51 E-value=0.0013 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998754
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.51 E-value=0.0012 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998863
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.51 E-value=0.0012 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3799999999999999999874
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.51 E-value=0.0012 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 353
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.50 E-value=0.0014 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.50 E-value=0.0012 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998863
No 355
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.49 E-value=0.0015 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
No 356
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.49 E-value=0.0012 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 357
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.48 E-value=0.0013 Score=51.54 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 358
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.0019 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345778999999999999999998764
No 359
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.47 E-value=0.0007 Score=59.58 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 360
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.45 E-value=0.0014 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999875
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.44 E-value=0.0016 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++-+++|+||.||||||+.+.|+-.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
No 362
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.43 E-value=0.0016 Score=57.49 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-+++|+|+.|||||||++.+.|-.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999953
No 363
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.43 E-value=0.0014 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 364
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.42 E-value=0.0012 Score=53.80 Aligned_cols=22 Identities=50% Similarity=0.732 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.42 E-value=0.0015 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
No 366
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.42 E-value=0.0014 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
No 367
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0015 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988643
No 368
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.41 E-value=0.0013 Score=56.87 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+|++|+|||||++.|.|--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999988753
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.41 E-value=0.0015 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.-+++|+|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 370
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.41 E-value=0.0013 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 371
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.40 E-value=0.0014 Score=59.81 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 372
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.022 Score=52.47 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH--hcCCCcEEEEEccCcchhh-------cCCEEE
Q 024738 170 AGALAEACKVLLLDELTTFL----------DESDQFGVIEAVKNLL--GDSGEVTALWVTHRLEELE-------YADGAF 230 (263)
Q Consensus 170 Aral~~~p~llllDEPts~L----------D~~~~~~l~~~l~~l~--~~~~~~tiiivtH~~~~~~-------~~d~v~ 230 (263)
..|-...|.+|++||--+-. |......+..+|.++- ....+..||.+|++++.+. ..|+.+
T Consensus 235 ~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 235 VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKI 314 (405)
T ss_dssp HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEE
T ss_pred HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEE
Confidence 34445679999999965432 3344445556665542 1234567899999887642 357666
Q ss_pred EEe
Q 024738 231 YME 233 (263)
Q Consensus 231 ~l~ 233 (263)
.+.
T Consensus 315 ~i~ 317 (405)
T 4b4t_J 315 EFP 317 (405)
T ss_dssp ECC
T ss_pred EcC
Confidence 653
No 373
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.37 E-value=0.0017 Score=51.48 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.36 E-value=0.0018 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.-.++++|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 375
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.34 E-value=0.012 Score=51.54 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 176 ACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 176 ~p~llllDEPts~LD-~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+++++++||.- .|. ......+...+.+... +..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~---~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSS---NCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGG---GCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCC---CcEEEEEeCCcccc
Confidence 78999999984 344 6667777777776532 35788888877643
No 376
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.32 E-value=0.0019 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 377
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.32 E-value=0.0021 Score=53.94 Aligned_cols=29 Identities=41% Similarity=0.513 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
-+|.+++|.|+.||||||+++.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
No 378
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.32 E-value=0.0018 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 379
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.32 E-value=0.0017 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.32 E-value=0.0019 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998864
No 381
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.32 E-value=0.0015 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
No 382
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.31 E-value=0.0018 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.31 E-value=0.0018 Score=52.05 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.31 E-value=0.0017 Score=55.17 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=22.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+|.+++|.|+.||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987653
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.31 E-value=0.0021 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|-+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997644
No 386
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.30 E-value=0.002 Score=60.53 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
.+++.+ +.+-+|+..+|+|++|+|||||++.|+.......+.|
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 366666 7788999999999999999999999987654333444
No 387
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.002 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.29 E-value=0.0019 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998864
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.29 E-value=0.0022 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.29 E-value=0.0016 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998875
No 391
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.28 E-value=0.0023 Score=55.38 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
-.++++|.+|+|||||++.+.|-.....|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 48999999999999999999997654433
No 392
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.27 E-value=0.0024 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999954
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.27 E-value=0.0021 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.27 E-value=0.002 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999888753
No 395
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0017 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999873
No 396
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.26 E-value=0.0013 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|+.|||||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.26 E-value=0.002 Score=52.48 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 398
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.26 E-value=0.0023 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 399
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0018 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 400
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.25 E-value=0.0022 Score=55.70 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
No 401
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.23 E-value=0.0023 Score=51.51 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
No 402
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.23 E-value=0.0017 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998864
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.23 E-value=0.0025 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.22 E-value=0.0022 Score=51.53 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999998753
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.22 E-value=0.0022 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 406
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.22 E-value=0.00076 Score=67.51 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=29.6
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 57 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++.+.+++.+.|.||+|||||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 466788999999999999999999999999764
No 407
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.21 E-value=0.0024 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+..+.|.||.|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
No 408
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.21 E-value=0.0022 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 409
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0027 Score=58.62 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.-.+..++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998764
No 410
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.20 E-value=0.0024 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.20 E-value=0.0031 Score=53.06 Aligned_cols=26 Identities=42% Similarity=0.530 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.++.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.20 E-value=0.0024 Score=52.82 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0021 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999888754
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0023 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 415
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.19 E-value=0.0028 Score=53.25 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.++++-|+.||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 416
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.19 E-value=0.002 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999998754
No 417
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.17 E-value=0.0024 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0021 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 419
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.16 E-value=0.0021 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999884
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.16 E-value=0.0029 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998854
No 421
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0025 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
No 422
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.15 E-value=0.0027 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998543
No 423
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.15 E-value=0.0025 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.15 E-value=0.0024 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0021 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999987754
No 426
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.14 E-value=0.0022 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 427
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0025 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.13 E-value=0.0025 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
No 429
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0028 Score=57.08 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988653
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0025 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 431
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.12 E-value=0.003 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.11 E-value=0.002 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988864
No 433
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.09 E-value=0.0023 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 434
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.08 E-value=0.0036 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998864
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.07 E-value=0.0029 Score=52.20 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 436
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.06 E-value=0.00083 Score=57.52 Aligned_cols=33 Identities=36% Similarity=0.647 Sum_probs=26.0
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.++.+..+.| +.|.||+|+|||||++.++...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 44455555666 7799999999999999999843
No 437
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.05 E-value=0.0035 Score=52.82 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=26.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+|.++++-|+.||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.04 E-value=0.0031 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999997653
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.04 E-value=0.0035 Score=55.95 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998754
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.03 E-value=0.0031 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999887753
No 441
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0026 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 442
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.02 E-value=0.0035 Score=56.44 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.+++|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 55689999999999999999999865
No 443
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.01 E-value=0.0035 Score=55.41 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999999977764
No 444
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.01 E-value=0.0038 Score=52.94 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+|.++++.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.01 E-value=0.0027 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 446
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.01 E-value=0.0021 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999988643
No 447
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.00 E-value=0.0035 Score=63.00 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
.+-..+.|.||+|+|||+|.+.|+.......+.+..-..-.+.........+.....
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~----------------------- 642 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPG----------------------- 642 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCC-----------------------
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-----------CC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS-----------GE 210 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~-----------~~ 210 (263)
+.|.++.+......-...+.+|++||. ..+++.....+++.|.+- . ++
T Consensus 643 -----------------~~G~~~~g~l~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~~---~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 643 -----------------YVGYEEGGQLTEAVRRRPYSVILFDEI-EKAHPDVFNILLQILDDG---RLTDSHGRTVDFRN 701 (854)
T ss_dssp -------------------------CHHHHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHTTT---EECCSSSCCEECTT
T ss_pred -----------------CcCccccchHHHHHHhCCCeEEEEecc-cccCHHHHHHHHHHhccC---ceECCCCCEeccCC
Q ss_pred cEEEEEcc
Q 024738 211 VTALWVTH 218 (263)
Q Consensus 211 ~tiiivtH 218 (263)
..||++|+
T Consensus 702 ~iiI~tsn 709 (854)
T 1qvr_A 702 TVIILTSN 709 (854)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.99 E-value=0.0038 Score=55.90 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999865
No 449
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.98 E-value=0.0031 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999763
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.96 E-value=0.0051 Score=51.38 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.7
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..++..-+.+ .|..++|+||+|||||||...|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566666665 57889999999999999998887643
No 451
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.95 E-value=0.0038 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 452
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.93 E-value=0.0042 Score=51.80 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 453
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.93 E-value=0.0035 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|+|||||++.++|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999965
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.92 E-value=0.0031 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 455
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.92 E-value=0.0039 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.90 E-value=0.0054 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988643
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.90 E-value=0.012 Score=63.87 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=30.8
Q ss_pred ccceecee--eEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 51 VPILRDCS--FSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 51 ~~iL~~vs--l~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.+.|+++. .-+++|+++.|.||.|||||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45788887 579999999999999999999998766
No 458
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.88 E-value=0.0035 Score=58.42 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|++|+|||||++.|+|
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 699999999999999999988
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0035 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 460
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.86 E-value=0.0036 Score=52.84 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+.+..++.|+||.||||+|..+.|+--
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4466778999999999999999999853
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.86 E-value=0.0027 Score=54.48 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998766
No 462
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.86 E-value=0.0019 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 463
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.85 E-value=0.0053 Score=47.78 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
..+.-+.|.||.|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45667899999999999999999886543
No 464
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.81 E-value=0.0069 Score=50.62 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHhhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch----------hh-cCCEEEEEe
Q 024738 172 ALAEACKVLLLDELTT----FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE----------LE-YADGAFYME 233 (263)
Q Consensus 172 al~~~p~llllDEPts----~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~----------~~-~~d~v~~l~ 233 (263)
+-..+|+++++|--+. .-|.....++...|+.++++ .++++++++|-... .+ .||-|+.|.
T Consensus 131 ~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~-~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH-cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 3456899999995431 11445556677777777765 46899999885321 23 489998885
No 465
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.81 E-value=0.001 Score=61.88 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=26.7
Q ss_pred eEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 59 FSVPSG--QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 59 l~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
|.+.++ .+++++|++|+||||++..|++.+...
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 444544 599999999999999999999987543
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.78 E-value=0.0042 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|..|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999998877643
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.77 E-value=0.0057 Score=49.95 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=35.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-----------hhhcCCEEEEEe
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-----------ELEYADGAFYME 233 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-----------~~~~~d~v~~l~ 233 (263)
.+++++++||--. +++. +.+.|+.++.. +..|+++.++.+ .+++||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~--~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR--GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHT--TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHC--CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999743 5543 44555555543 578888888655 234699987775
No 468
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.75 E-value=0.017 Score=57.03 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
.+.|.||+|+|||+|.+.|+.........+..-..-.|.......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----------------------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----------------------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-----------------------------------
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH--------HHhcCCCcEEEEEc
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN--------LLGDSGEVTALWVT 217 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~--------l~~~~~~~tiiivt 217 (263)
........--..+.+|++||- ..+++.....+++.+.+ ......+..+|++|
T Consensus 568 -------------------~~~l~~~~~~~~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -------------------GGQLTEKVRRKPYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----------------------CHHHHHHCSSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -------------------cchhhHHHHhCCCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Q ss_pred c-----------------CcchhhcCCEEEEEe
Q 024738 218 H-----------------RLEELEYADGAFYME 233 (263)
Q Consensus 218 H-----------------~~~~~~~~d~v~~l~ 233 (263)
+ +.+++..+|.++.+.
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.74 E-value=0.0031 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999865
No 470
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0049 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 471
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.71 E-value=0.002 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988875
No 472
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.71 E-value=0.0043 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999998764
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.65 E-value=0.0053 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999988764
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.64 E-value=0.0064 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+++|+||+|||||||...|+.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.63 E-value=0.0047 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988874
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.62 E-value=0.0068 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988664
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.59 E-value=0.0066 Score=49.16 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=31.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
.++.++++||. ..+++.....+...+.+. ..+..+|++|+....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY---SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc---CCCCeEEEEeCChhh
Confidence 36889999995 557777777777777653 224567777777654
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0058 Score=49.93 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.48 E-value=0.008 Score=52.23 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++..+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999888765
No 480
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.44 E-value=0.051 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=37.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccC---------c--chhhcCCEEEEEe
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR---------L--EELEYADGAFYME 233 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~---------~--~~~~~~d~v~~l~ 233 (263)
.+.+++++||---..| ..++.+.+.+ .|+.||+..++ . +++++||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~-----~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN-----AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH-----TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh-----CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 4444444443 36799999999 2 2347899998775
No 481
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.43 E-value=0.0027 Score=54.06 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 171 GALAEACKVLLLDELTTF-LDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 171 ral~~~p~llllDEPts~-LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.++..+|+++|+|||-.- .+.......++.+..... .|..++.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~--sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA--AGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH--TTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc--CCCCEEEEcc
Confidence 334468999999998642 332222223333333332 3578888888
No 482
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.40 E-value=0.0091 Score=49.77 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.38 E-value=0.012 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.3
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++..-+. -.|.-+.|.|++|+|||||.-.+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45555555 4577899999999999999877654
No 484
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.33 E-value=0.0048 Score=57.53 Aligned_cols=36 Identities=33% Similarity=0.591 Sum_probs=28.2
Q ss_pred eceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCC
Q 024738 55 RDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 55 ~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
+.+.-.+..|.+ +.|.||.|+|||||+++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444445556664 899999999999999999987643
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.24 E-value=0.011 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
-.++++|.+|+|||||+|.|.|-..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999999653
No 486
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.22 E-value=0.0091 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|.||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999887543
No 487
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.20 E-value=0.01 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+..+.|.||.|+|||||++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999866
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.18 E-value=0.0097 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..-+++|+|+.|+|||||++.+++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999887653
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.17 E-value=0.01 Score=53.19 Aligned_cols=26 Identities=42% Similarity=0.681 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++..+.|.||+|+||||+.+.|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999876
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.17 E-value=0.009 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.++|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.16 E-value=0.0098 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999885
No 492
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.15 E-value=0.0094 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..++|||||++.++|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.13 E-value=0.013 Score=51.65 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+..+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999987553
No 494
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.12 E-value=0.012 Score=52.53 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+|..+.|.||.|+|||||++.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45678999999999999999999987653
No 495
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.12 E-value=0.0036 Score=50.93 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988765
No 496
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.10 E-value=0.014 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.|.++.|.||.|+|||||++.++...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999987643
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.012 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..+.|.||.|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.07 E-value=0.012 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+...+.|.||.|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33568888999999999999999765
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.05 E-value=0.017 Score=49.24 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
..+..+.|.||.|+|||+|.+.|+......
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 345678899999999999999999876543
No 500
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.03 E-value=0.0067 Score=50.03 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHH-HhCC
Q 024738 66 LWMLLGPNGCGKSTLLKV-LAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~-i~Gl 87 (263)
.++|+|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 6553
Done!