Query 024739
Match_columns 263
No_of_seqs 162 out of 362
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 1.6E-65 3.5E-70 432.5 20.3 152 100-260 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.7 1E-08 2.2E-13 69.4 3.3 44 5-48 2-45 (47)
3 PF00646 F-box: F-box domain; 98.4 9.2E-08 2E-12 64.4 1.7 44 4-47 3-46 (48)
4 smart00256 FBOX A Receptor for 98.3 4E-07 8.7E-12 58.7 2.8 40 7-46 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 94.3 0.032 6.9E-07 44.4 2.3 73 2-81 2-74 (109)
6 KOG2997 F-box protein FBX9 [Ge 92.6 0.042 9.1E-07 51.9 0.6 82 4-88 107-194 (366)
7 PLN03215 ascorbic acid mannose 88.4 0.36 7.8E-06 46.6 2.8 40 1-40 1-41 (373)
8 KOG3926 F-box proteins [Amino 87.3 0.39 8.5E-06 44.6 2.2 74 4-80 202-278 (332)
9 KOG4408 Putative Mg2+ and Co2+ 82.1 0.37 8E-06 45.9 -0.4 50 4-53 8-57 (386)
10 PF02018 CBM_4_9: Carbohydrate 81.5 22 0.00047 27.3 9.7 69 154-240 57-125 (131)
11 KOG0274 Cdc4 and related F-box 76.1 0.95 2.1E-05 45.7 0.4 49 4-52 108-156 (537)
12 KOG2120 SCF ubiquitin ligase, 74.5 2.1 4.5E-05 40.9 2.1 44 4-47 98-141 (419)
13 PF13013 F-box-like_2: F-box-l 41.1 20 0.00043 28.8 2.0 42 4-48 22-63 (109)
14 KOG0281 Beta-TrCP (transducin 39.9 16 0.00035 35.4 1.5 44 4-47 75-122 (499)
15 KOG4114 Cytochrome c oxidase a 37.9 16 0.00035 27.1 0.9 17 4-20 38-54 (73)
16 PF03242 LEA_3: Late embryogen 27.2 14 0.00031 28.8 -0.9 25 112-140 61-89 (93)
17 PF11679 DUF3275: Protein of u 22.1 2E+02 0.0044 25.8 5.2 42 216-260 22-73 (214)
18 KOG3233 RNA polymerase III, su 22.1 13 0.00027 34.8 -2.4 43 97-147 137-183 (297)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=1.6e-65 Score=432.52 Aligned_cols=152 Identities=51% Similarity=0.918 Sum_probs=143.8
Q ss_pred CCeeEEeecccceeeeCCCCCceeEEecCCCCcccceEEeeeeEEEEEEEEeecccCCCCceEEEEEEEeecccCCCCcc
Q 024739 100 GKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETR 179 (263)
Q Consensus 100 G~kcymLsAR~L~ItWgdd~~yW~W~~~~~SrF~EvAeL~~VcWLEI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~ 179 (263)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CeEEEEEEeCCcee-eeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCCCCceEEEEEEEe-CCCCccceEEEEEEE
Q 024739 180 PIEFDVYFEGNDTH-KMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES-EPTPKCGIIIEGIEL 257 (263)
Q Consensus 180 Pv~~~v~~~~~~~~-~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~eV~fsl~e~-~~~wK~GLiv~GieI 257 (263)
||+++|++++++.. +.+.+++ |++|+|||||||+|||+++++++++|+|+|+|+ +++||+||||+||||
T Consensus 81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI 151 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI 151 (154)
T ss_pred CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence 99999999988763 2256664 567899999999999999988899999999999 899999999999999
Q ss_pred Eec
Q 024739 258 RPK 260 (263)
Q Consensus 258 RPk 260 (263)
|||
T Consensus 152 RPK 154 (154)
T PF14299_consen 152 RPK 154 (154)
T ss_pred ecC
Confidence 998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.72 E-value=1e-08 Score=69.37 Aligned_cols=44 Identities=16% Similarity=0.418 Sum_probs=39.8
Q ss_pred ccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccC
Q 024739 5 FAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFL 48 (263)
Q Consensus 5 ~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~fl 48 (263)
.+||++.+.+|+++++|.|.++++.||+.|+.++.++.+|.++.
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 58999999999999999999999999999999999999999764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.43 E-value=9.2e-08 Score=64.45 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739 4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF 47 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (263)
+.+||++++.+|++++++.|.++++.||+.|+.+++++.+|..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 57899999999999999999999999999999999999999865
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.32 E-value=4e-07 Score=58.71 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=38.6
Q ss_pred chHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcc
Q 024739 7 MFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEK 46 (263)
Q Consensus 7 Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~ 46 (263)
||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=94.26 E-value=0.032 Score=44.38 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=57.8
Q ss_pred CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCccccCCcHHHHHHhhcc
Q 024739 2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCY 81 (263)
Q Consensus 2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~~~~skkely~~L~~ 81 (263)
+.++++|.+.|.-||...+|....++..-|+.+ +-++|.+|.+|+-.||..-..... +.. ..|-+++|..+.+
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~--~~~---~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK--PKE---PESWRELYEKLKK 74 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc--ccc---cchHHHHHHHHHH
Confidence 568899999999999999999999999998765 456999999999999975222211 111 2588999998863
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.64 E-value=0.042 Score=51.87 Aligned_cols=82 Identities=7% Similarity=0.066 Sum_probs=56.4
Q ss_pred cccchHHHHHHHHhcCCh-----hhhhhhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCc-cccCCcHHHHHH
Q 024739 4 PFAMFAQCISHIISLITP-----GNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSS-LVTSLSKKKLYF 77 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~P-----~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~-~~~~~skkely~ 77 (263)
+..||++.+-.|+...=| ++.-++|+||+.|+-+|..|.+|..+|=.-++.-+-...+ -.. ..-..|-+++|+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~-~~~~sky~~SWR~Mfl 185 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNP-KILQSKYYTSWREMFL 185 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccch-hhhhhHHHhHHHHHHh
Confidence 468999999988876555 9999999999999999999999999988766522211111 000 001257788887
Q ss_pred hhccCCeeecC
Q 024739 78 HLCYNPILINN 88 (263)
Q Consensus 78 ~L~~~pvll~~ 88 (263)
.= .-|.+|+
T Consensus 186 ~R--pRvrFdG 194 (366)
T KOG2997|consen 186 ER--PRVRFDG 194 (366)
T ss_pred hC--cceeecc
Confidence 53 2355544
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=88.39 E-value=0.36 Score=46.60 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=36.3
Q ss_pred CCccccchHHHHHHHHhcC-ChhhhhhhhccChhHHhhhcc
Q 024739 1 MDSPFAMFAQCISHIISLI-TPGNASKLSSTYPAFKSVVDS 40 (263)
Q Consensus 1 ~~~~~~Lpe~cia~ils~~-~P~dacr~a~vs~~fr~aa~s 40 (263)
|..-.+||+|.+..|..++ +..|..|+++||+++|+|+..
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4455789999999999999 799999999999999999986
No 8
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=87.28 E-value=0.39 Score=44.60 Aligned_cols=74 Identities=16% Similarity=0.394 Sum_probs=55.0
Q ss_pred cccchHHHHHHHHhcCC-hhhhhhhhccChhHHhhhccchhhcccCCCchh--hhccccCCCCCccccCCcHHHHHHhhc
Q 024739 4 PFAMFAQCISHIISLIT-PGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYK--KIISISSFSTSSLVTSLSKKKLYFHLC 80 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~-P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~--~i~~~~~~~~~~~~~~~skkely~~L~ 80 (263)
|.|||++|+..||-+++ -+|.--+|-|-.++....+.+-+|.+.+.=.|. +|-.....+-.. ..--|++|+.|-
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~---q~dWkqmyf~L~ 278 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKG---QKDWKQMYFQLR 278 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccc---chhHHHHHHHHH
Confidence 57999999999998887 899999999999999999999999998875543 243332210000 123578888874
No 9
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=82.06 E-value=0.37 Score=45.89 Aligned_cols=50 Identities=6% Similarity=-0.008 Sum_probs=45.7
Q ss_pred cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchh
Q 024739 4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYK 53 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~ 53 (263)
++.+|.+-+..+++++.++++.+.|+||+.+...++-+.+|++++-.++.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~ 57 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL 57 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence 57888889999999999999999999999999999999999999866544
No 10
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=81.53 E-value=22 Score=27.29 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=43.8
Q ss_pred ccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCceeeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCCCCc
Q 024739 154 ILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDG 233 (263)
Q Consensus 154 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~ 233 (263)
.|-||.+|.+.|-++.... .++.+.+...++.... ....- ...-.+.|.+++ ++|... .+..
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~W~~~s-~~ft~~-~~~~ 118 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSPYN-WYTGQ---------TVTITGEWTKYS-GTFTAP-SDDD 118 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTTEE-EEEEE---------EEEETSSEEEEE-EEEEEE-SSCE
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCCcE-EEEEE---------EEECCCCcEEEE-EEEEEC-CCCc
Confidence 4559999999999999764 5777777776663111 00000 011247899999 589888 4455
Q ss_pred eEEEEEE
Q 024739 234 AVICRVC 240 (263)
Q Consensus 234 eV~fsl~ 240 (263)
.+.|.+.
T Consensus 119 ~~~l~~~ 125 (131)
T PF02018_consen 119 TVRLYFE 125 (131)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6666553
No 11
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.15 E-value=0.95 Score=45.70 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=44.1
Q ss_pred cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCch
Q 024739 4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDY 52 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~ 52 (263)
+..||-+-.-.|++++++++.++++.||+.|+..++.|.+|-+.+....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~ 156 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI 156 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence 4678999999999999999999999999999999999999997766543
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.51 E-value=2.1 Score=40.85 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=41.6
Q ss_pred cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739 4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF 47 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (263)
.+.||++.+-.|+|.+--.|.-++|.||+.|...|...++|...
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 47899999999999999999999999999999999999999764
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=41.10 E-value=20 Score=28.76 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccC
Q 024739 4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFL 48 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~fl 48 (263)
+.|||++.+..|...-.+.+...+...++++|.+.+. .|. +|
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~-~L 63 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY-LL 63 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH-Hh
Confidence 6789999999999999999999999999999988554 665 44
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=39.92 E-value=16 Score=35.44 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=37.0
Q ss_pred cccch----HHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739 4 PFAMF----AQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF 47 (263)
Q Consensus 4 ~~~Lp----e~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (263)
.+.|| +.....|||++...+.|..-.||+.++.+-+..-+|.+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35689 888889999999999999999999999887766666543
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=37.95 E-value=16 Score=27.14 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=14.3
Q ss_pred cccchHHHHHHHHhcCC
Q 024739 4 PFAMFAQCISHIISLIT 20 (263)
Q Consensus 4 ~~~Lpe~cia~ils~~~ 20 (263)
+.+|||+|++.+=.|+.
T Consensus 38 ~~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 38 LKDVPEECIALMKAFLD 54 (73)
T ss_pred cccCcHHHHHHHHHHHH
Confidence 35799999999988875
No 16
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=27.21 E-value=14 Score=28.80 Aligned_cols=25 Identities=36% Similarity=0.779 Sum_probs=17.4
Q ss_pred eeeeCCCCC--ceeEEecCCCCcccc--eEEee
Q 024739 112 SITWGSSPQ--HWKWLSLPESRFPEV--AELKL 140 (263)
Q Consensus 112 ~ItWgdd~~--yW~W~~~~~SrF~Ev--AeL~~ 140 (263)
...|.-||. ||+ |+.+|.|| |||++
T Consensus 61 ~~~W~pDPvTGyyr----Pen~~~EiD~AeLR~ 89 (93)
T PF03242_consen 61 KSSWMPDPVTGYYR----PENHFGEIDAAELRA 89 (93)
T ss_pred ccccccCCCCcccc----CCCCCCCCCHHHHHH
Confidence 455667775 777 88888765 77754
No 17
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.09 E-value=2e+02 Score=25.84 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=29.4
Q ss_pred CeEEEEeeeEEecCC-----CCc--eEEEEEEEe---CCCCccceEEEEEEEEec
Q 024739 216 GWMEIGIGEFFNENG-----DDG--AVICRVCES---EPTPKCGIIIEGIELRPK 260 (263)
Q Consensus 216 gW~Eie~GeF~~~~~-----~~~--eV~fsl~e~---~~~wK~GLiv~GieIRPk 260 (263)
|-+.-++|+|.+... ++| +=.|-+.++ +..|.+|++| |||-.
T Consensus 22 G~L~T~iG~F~VKD~~LdQy~EGkY~G~F~I~~I~p~sY~~~G~~~~---EIRA~ 73 (214)
T PF11679_consen 22 GRLATSIGEFVVKDAELDQYPEGKYDGEFVITEIFPSSYPAGGRMVV---EIRAR 73 (214)
T ss_pred eEEEeeeeeEEecCHHHhccccCccccEEEEEEEeecceecCCcEEE---EEEEE
Confidence 778888999987432 223 334667776 6778999998 77754
No 18
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=22.05 E-value=13 Score=34.78 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=29.8
Q ss_pred ecCCCeeEEeecc--cceeeeCCCCCceeEEecC--CCCcccceEEeeeeEEEEE
Q 024739 97 HESGKKCYMVGAR--GLSITWGSSPQHWKWLSLP--ESRFPEVAELKLVWCFEIM 147 (263)
Q Consensus 97 k~sG~kcymLsAR--~L~ItWgdd~~yW~W~~~~--~SrF~EvAeL~~VcWLEI~ 147 (263)
+.+++|||||.-= ..+||.| .|.+.. |+-|.| -|+++||.=+.
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG------~WytDqdlDvEfIe--~L~~~c~~fl~ 183 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGG------TWYTDQDLDVEFIE--VLKQICVRFLE 183 (297)
T ss_pred cCCCceEEEEecccccccccCC------cccccccccHHHHH--HHHHHHHHHHH
Confidence 4588999999874 6788887 576654 344544 57888875443
Done!