Query 024739
Match_columns 263
No_of_seqs 162 out of 362
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:36:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.9E-09 1.3E-13 72.0 4.0 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.7 1.1E-08 3.9E-13 93.8 4.4 78 2-80 3-93 (312)
3 2e31_A FBS1, F-box only protei 98.0 2.8E-06 9.7E-11 77.7 3.9 82 2-89 49-131 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.9 3.4E-06 1.2E-10 77.3 2.9 48 2-49 17-64 (445)
5 3v7d_B Cell division control p 97.6 1.6E-05 5.4E-10 72.8 1.9 46 3-48 14-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.5 1.3E-05 4.5E-10 73.5 0.4 50 2-51 9-62 (435)
7 2ast_B S-phase kinase-associat 96.9 0.00053 1.8E-08 60.7 3.7 45 3-47 8-52 (336)
8 2p1m_B Transport inhibitor res 95.1 0.01 3.6E-07 56.2 3.2 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 93.2 0.033 1.1E-06 52.9 2.3 34 5-38 14-48 (592)
10 1dyo_A Endo-1,4-beta-xylanase 87.5 9.8 0.00034 30.6 12.8 99 150-262 60-158 (160)
11 4hfx_A Transcription elongatio 86.8 0.2 6.8E-06 38.4 1.1 64 7-81 13-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 46.6 1.4E+02 0.0048 28.6 10.9 92 152-260 77-169 (540)
13 3tes_A Tencon; fibronectin typ 28.6 99 0.0034 21.7 5.1 37 150-190 57-93 (98)
14 1gui_A Laminarinase 16A; carbo 26.3 2.2E+02 0.0074 21.8 12.4 84 154-260 68-155 (155)
15 2xom_A Arabinogalactan endo-1, 25.3 2.5E+02 0.0084 22.0 9.5 79 157-261 70-152 (152)
16 3qht_C Monobody YSMB-1; fibron 23.8 93 0.0032 21.6 4.2 34 150-184 60-94 (97)
17 3b83_A Ten-D3; beta sheet, com 21.0 1.5E+02 0.005 20.7 4.8 38 150-191 57-94 (100)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.79 E-value=3.9e-09 Score=71.97 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739 3 SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF 47 (263)
Q Consensus 3 ~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (263)
.+.+||++++.+|+++++|.|.+++++||+.|+.++.++.+|.++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 467899999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=93.82 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=62.6
Q ss_pred CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchh---hhccccCCCCCc--------cc--c
Q 024739 2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYK---KIISISSFSTSS--------LV--T 68 (263)
Q Consensus 2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~---~i~~~~~~~~~~--------~~--~ 68 (263)
|++++||.+++.+|+||++|+|+|++|+||+.||.+|+++.+|+.||-.|++ ++-..+.|. .. .. -
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~-~~~~~~~~~~~~~~~ 81 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD-LEILKKPISEVTDGA 81 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCS-CHHHHSSCSCC----
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcc-hhhccCccccccccc
Confidence 5789999999999999999999999999999999999999999999998754 444443321 10 00 0
Q ss_pred CCcHHHHHHhhc
Q 024739 69 SLSKKKLYFHLC 80 (263)
Q Consensus 69 ~~skkely~~L~ 80 (263)
...++.+|.+=|
T Consensus 82 ~~~~~~~y~~~~ 93 (312)
T 3l2o_B 82 FFDYMAVYRMCC 93 (312)
T ss_dssp CCCHHHHHHHHC
T ss_pred cccHHHHHHhcC
Confidence 346799999988
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.01 E-value=2.8e-06 Score=77.75 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=61.4
Q ss_pred CccccchHHHHHHHHhcCChhhhh-hhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCccccCCcHHHHHHhhc
Q 024739 2 DSPFAMFAQCISHIISLITPGNAS-KLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLC 80 (263)
Q Consensus 2 ~~~~~Lpe~cia~ils~~~P~dac-r~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~~~~skkely~~L~ 80 (263)
..+..||++.+..||+++.|++.+ |+++||+.||..++++.+|.+.|... .+...... +.+ ..+-|.+|+.--
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~-~~~---~~~Wk~~y~~~~ 122 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA-DEE---RDHWQQFYFLSK 122 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC------C---CSCHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc-CCC---CCChhhhhehee
Confidence 456899999999999999999999 99999999999999999999998765 12211111 001 256899998743
Q ss_pred cCCeeecCC
Q 024739 81 YNPILINNN 89 (263)
Q Consensus 81 ~~pvll~~g 89 (263)
-.-+||.|.
T Consensus 123 ~gRNLL~NP 131 (297)
T 2e31_A 123 RRRNLLRNP 131 (297)
T ss_dssp HCCCCSSCS
T ss_pred cccceeecC
Confidence 355666553
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.93 E-value=3.4e-06 Score=77.31 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=45.2
Q ss_pred CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCC
Q 024739 2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLP 49 (263)
Q Consensus 2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP 49 (263)
+.+..||++++.+|+++++|.|.|++++||+.|+.+++++.+|.+++-
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 567899999999999999999999999999999999999999998764
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.61 E-value=1.6e-05 Score=72.80 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=43.3
Q ss_pred ccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhcc-chhhcccC
Q 024739 3 SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDS-DSVWEKFL 48 (263)
Q Consensus 3 ~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~s-D~vW~~fl 48 (263)
-+..||++++.+|+++++|+|.|++++||+.|+.++++ +.+|.+++
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46789999999999999999999999999999999988 89999887
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.54 E-value=1.3e-05 Score=73.45 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=45.8
Q ss_pred CccccchHH----HHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCc
Q 024739 2 DSPFAMFAQ----CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSD 51 (263)
Q Consensus 2 ~~~~~Lpe~----cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d 51 (263)
+-+..||++ .+.+|+++++|.|.|++++||+.|+.+++++.+|.+++..+
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 346789999 99999999999999999999999999999999999987654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.90 E-value=0.00053 Score=60.70 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739 3 SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF 47 (263)
Q Consensus 3 ~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (263)
.+++||++++.+|+++++++|.++++.||+.|+.++.+...|..+
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 468999999999999999999999999999999999877788754
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.11 E-value=0.01 Score=56.24 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=29.6
Q ss_pred CccccchHHHHHHHHhcCC-hhhhhhhhccChhHHhh
Q 024739 2 DSPFAMFAQCISHIISLIT-PGNASKLSSTYPAFKSV 37 (263)
Q Consensus 2 ~~~~~Lpe~cia~ils~~~-P~dacr~a~vs~~fr~a 37 (263)
+.+++||++++.+|+++++ ++|++++|.||+.|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4578999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.23 E-value=0.033 Score=52.85 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHhcC-ChhhhhhhhccChhHHhhh
Q 024739 5 FAMFAQCISHIISLI-TPGNASKLSSTYPAFKSVV 38 (263)
Q Consensus 5 ~~Lpe~cia~ils~~-~P~dacr~a~vs~~fr~aa 38 (263)
.+||++|+.+|++++ +++|+++++.||+.|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 379999999999999 8999999999999999883
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=87.51 E-value=9.8 Score=30.56 Aligned_cols=99 Identities=9% Similarity=0.139 Sum_probs=57.7
Q ss_pred EeecccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCceeeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecC
Q 024739 150 IETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNEN 229 (263)
Q Consensus 150 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~ 229 (263)
+....|.||++|.+..-+++.+.. +...+.+++...+..... +...+.. -....++|.+++-|.|..+.
T Consensus 60 ~t~~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~-~y~~i~~-------~~~~~~~W~~L~G~~ft~~~ 128 (160)
T 1dyo_A 60 LNPRTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ-RYDTIDM-------KTVGPNQWVHLYNPQYRIPS 128 (160)
T ss_dssp ECTTTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE-EEEEEEE-------EEECSSCCEEEEEEEEECCT
T ss_pred cchhhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE-EEEEEee-------EEEcCCccEEEECcEEEeCC
Confidence 333478999999999999987642 222344455442322111 1111111 01135789999987998865
Q ss_pred CCCceEEEEEEEeCCCCccceEEEEEEEEecCC
Q 024739 230 GDDGAVICRVCESEPTPKCGIIIEGIELRPKNG 262 (263)
Q Consensus 230 ~~~~eV~fsl~e~~~~wK~GLiv~GieIRPk~~ 262 (263)
.. ..+.+-+ | +..-..=+.|+.|.|.|...
T Consensus 129 ~~-~~~~lyv-e-~~~~~~d~yiDdv~i~~~g~ 158 (160)
T 1dyo_A 129 DA-TDMYVYV-E-TADDTINFYIDEAIGAVAGT 158 (160)
T ss_dssp TC-EEEEEEE-E-ESSCCCCEEEEEEEEEETTC
T ss_pred CC-CEEEEEE-E-CCCCCccEEEEEEEEEeCcc
Confidence 42 2344322 3 23345568899999998753
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=86.81 E-value=0.2 Score=38.38 Aligned_cols=64 Identities=14% Similarity=0.286 Sum_probs=39.3
Q ss_pred chHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCccccCCcHHHHHHhhcc
Q 024739 7 MFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCY 81 (263)
Q Consensus 7 Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~~~~skkely~~L~~ 81 (263)
.|.+.+.-||-.-+|....++-.-|+.+ +-++|-+|.+|+-.||..-- + .. .-|-+++|.+|.+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~---p---~e---~esWRelY~rl~~ 76 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER---P---EE---YESWREMYLRLQD 76 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC---C---CS---SSCHHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC---C---CC---CCCHHHHHHHHHH
Confidence 5888888899999999999999999965 66899999999999998332 1 11 2689999999974
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=46.59 E-value=1.4e+02 Score=28.55 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=52.6
Q ss_pred ecccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCce-eeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCC
Q 024739 152 TKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDT-HKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENG 230 (263)
Q Consensus 152 ~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~-~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~ 230 (263)
+..|.||++|....-+|. + |=...++.+++...++.. .. ....+.. -....++|.+++ |.|.....
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~-~~~~i~~-------~~~~~g~Wt~L~-g~ft~p~~ 143 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEE-NKEVIAT-------KDVVAGEWTEIS-AKYKAPKT 143 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCE-EEEEEEE-------EEEETTCCEEEE-EEEECCTT
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCc-eEEEeeE-------EEEeCCeeEEEE-eEEEecCC
Confidence 457899999999999985 2 212234555555422211 11 1111110 011368999999 79987543
Q ss_pred CCceEEEEEEEeCCCCccceEEEEEEEEec
Q 024739 231 DDGAVICRVCESEPTPKCGIIIEGIELRPK 260 (263)
Q Consensus 231 ~~~eV~fsl~e~~~~wK~GLiv~GieIRPk 260 (263)
. ..+++.+ |. .-..-+.|+.|.|.++
T Consensus 144 ~-~~~~lyv-e~--~~~~~f~vDdvsl~~~ 169 (540)
T 2w5f_A 144 A-VNITLSI-TT--DSTVDFIFDDVTITRK 169 (540)
T ss_dssp E-EEEEEEE-EE--SSCCCEEEEEEEEEEC
T ss_pred C-eEEEEEE-Ec--CCCCCEEEEEEEEecC
Confidence 2 3455433 33 2345788999988765
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=28.58 E-value=99 Score=21.72 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=24.9
Q ss_pred EeecccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCC
Q 024739 150 IETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGN 190 (263)
Q Consensus 150 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~ 190 (263)
+...-|.|+|.|.+.+.-.-. .|- ..|+...+..+|.
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~---~g~-S~p~~~~~~~~~~ 93 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKG---GHR-SNPLSAEFTTGGH 93 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEET---TEE-BCCEEEEEECSSC
T ss_pred EEECCCCCCCEEEEEEEEEeC---Ccc-cCCEEEEEEcCcc
Confidence 444568999999987655433 243 4788888877553
No 14
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=26.31 E-value=2.2e+02 Score=21.76 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=48.2
Q ss_pred ccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCC-ceee---eEEEEcCCCCCCCccccccCCCeEEEEeeeEEecC
Q 024739 154 ILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGN-DTHK---MHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNEN 229 (263)
Q Consensus 154 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~-~~~~---~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~ 229 (263)
.|.+|.+|.+.|.++-.. +..+.+.+.+. .... ...+.+ ...|-+++. +|...+
T Consensus 68 ~l~~G~~Y~lsf~aka~~--------~~~i~v~l~~~~~~~~~~~~~~~~l-------------t~~w~~~~~-~ft~~~ 125 (155)
T 1gui_A 68 GLYRGKTYTISFKAKADT--------PRPINVKILQNHDPWTNYFAQTVNL-------------TADWQTFTF-TYTHPD 125 (155)
T ss_dssp ECCTTCEEEEEEEEEESS--------CEEEEEEEECSSTTCCEEEEEEEEE-------------CSSCEEEEE-EEECCT
T ss_pred EeCCCCEEEEEEEEEeCC--------CCcEEEEEEcCCCChHHheeccEee-------------CCCCEEEEE-EEEcCC
Confidence 577899999999887753 23344444332 1111 012222 347999986 777655
Q ss_pred CCCceEEEEEEEeCCCCccceEEEEEEEEec
Q 024739 230 GDDGAVICRVCESEPTPKCGIIIEGIELRPK 260 (263)
Q Consensus 230 ~~~~eV~fsl~e~~~~wK~GLiv~GieIRPk 260 (263)
..+....+.+. .++.--+.+.|+-|.+.|.
T Consensus 126 ~t~~~~~l~f~-~g~~~~~~v~iD~VsL~P~ 155 (155)
T 1gui_A 126 DADEVVQISFE-LGEGTATTIYFDDVTVSPQ 155 (155)
T ss_dssp TSCSEEEEEEE-CCSSCCCEEEEEEEEEEEC
T ss_pred CCCceEEEEEE-CCCCCCceEEEEEEEEEeC
Confidence 32333333332 2322236799999999984
No 15
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=25.31 E-value=2.5e+02 Score=22.04 Aligned_cols=79 Identities=13% Similarity=0.065 Sum_probs=46.7
Q ss_pred CCCceEEEEEEEeecccCCCCccCeEEEEEEe--CCceeeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCCCCce
Q 024739 157 SKTNYATYLVFKFVETREGFETRPIEFDVYFE--GNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGA 234 (263)
Q Consensus 157 p~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~--~~~~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~e 234 (263)
|+++|.+..-++-.. | + ++.+.+. ++.... ..+.. + .-..|..+.+-+|.+.. +.
T Consensus 70 p~gtYtlsa~v~~~~---~-~----~~yl~~~~~gg~~~~-~~~~~---------~--g~~~w~~~~i~~i~v~~---G~ 126 (152)
T 2xom_A 70 PAGVYRVGFWTHGEK---G-V----KIALKVSDYGGNERS-VEVET---------T--GWLEWKNPEIRNIKVET---GR 126 (152)
T ss_dssp CSEEEEEEEEEEEST---T-C----EEEEEEESSSSCCEE-EEEEC---------C--EEEEEECCEEEEEEECS---SE
T ss_pred CCCeEEEEEEEEcCC---C-c----eEEEEEecCCCcEEE-EEccC---------C--CCCcccEEEEeEEEEeC---Ce
Confidence 666899988887643 3 2 1444443 333322 22211 0 01357778888888754 46
Q ss_pred EEEEEEEe--CCCCccceEEEEEEEEecC
Q 024739 235 VICRVCES--EPTPKCGIIIEGIELRPKN 261 (263)
Q Consensus 235 V~fsl~e~--~~~wK~GLiv~GieIRPk~ 261 (263)
++++++-. .++| .-|+-+++.+.+
T Consensus 127 ~~Ig~~~~~~~g~W---~~iDd~~L~~~e 152 (152)
T 2xom_A 127 IKITVSVEGRAGDW---GFIDDFYLFREE 152 (152)
T ss_dssp EEEEEEEEECTTCE---EEEEEEEEEEC-
T ss_pred EEEEEEEEcCCCCe---EEEEEEEEEEcC
Confidence 77777543 6677 889999987753
No 16
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=23.78 E-value=93 Score=21.63 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=20.6
Q ss_pred EeecccCCCCceEEEEEEEeecccCC-CCccCeEEE
Q 024739 150 IETKILSSKTNYATYLVFKFVETREG-FETRPIEFD 184 (263)
Q Consensus 150 i~~~~LSp~t~Y~ay~v~kl~~~~~G-w~~~Pv~~~ 184 (263)
+.-.-|.|+|.|.+.+.-.-... .| ....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G-~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYY-DLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEET-TEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCc-cCCCCCCCEEEe
Confidence 44457999999988776544432 23 233566554
No 17
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=21.01 E-value=1.5e+02 Score=20.71 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=25.4
Q ss_pred EeecccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCc
Q 024739 150 IETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGND 191 (263)
Q Consensus 150 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~ 191 (263)
+...-|.|+|.|.+.+.-.- ..|.. .|+..+..+.-++
T Consensus 57 ~~i~~L~p~t~Y~~~V~A~n---~~g~s-~p~~~~~~~~~~~ 94 (100)
T 3b83_A 57 LTLTNLEPNTTYEIRIVARN---GQQYS-PPVSTTFTTGSLE 94 (100)
T ss_dssp EEECSCCTTCEEEEEEEEEE---TTEEC-CCEEEEEECCCCC
T ss_pred EEECCCCCCCEEEEEEEEEe---CCCCC-CCEEEEEEEEeee
Confidence 34457999999998775543 23665 7888777665444
Done!