BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024740
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/251 (61%), Positives = 173/251 (68%), Gaps = 33/251 (13%)
Query: 1 MDRQGHGGQPTSMGLVGSGAQVPYGTNPYQQNQMAGGPNPGPAVTSVGAIQSTSQPGGAQ 60
MD+Q HG SGA + YGTNPYQ N M+ T+ +QPG
Sbjct: 1 MDQQDHGQ---------SGA-MNYGTNPYQTNPMS--------TTAATVAGGAAQPG--- 39
Query: 61 LAQHQLAYQQIHHQQQQQLQQQLQS-FWANQYQEIEKVNDFKNHSLPLARIKKIMKADED 119
QLA+ QIH QQQQQ Q FW NQ++EIEK DFKNHSLPLARIKKIMKADED
Sbjct: 40 ----QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADED 95
Query: 120 VRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 179
VRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 96 VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 155
Query: 180 VPREDLKDEVLASIPRGTLPVGGPPDMPPYCYMPTQHASQVGSAGLIMGKPVMDPAIYAQ 239
VPREDL+DEVL SIPRGT+P PY Y+P A +G+ G++MG P A
Sbjct: 156 VPREDLRDEVLGSIPRGTVPEAAAAGY-PYGYLPAGTAP-IGNPGMVMGNPGG-----AY 208
Query: 240 QSHPYMGQQMW 250
+PYMGQ MW
Sbjct: 209 PPNPYMGQPMW 219
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 246 bits (629), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 147/246 (59%), Positives = 166/246 (67%), Gaps = 33/246 (13%)
Query: 17 GSGAQVPYGTNPYQQNQMAGGPNPGPAVTSVGAIQSTSQPGGAQLAQHQLAYQQIHHQQQ 76
G + + YG+NPYQ N M T+ P G+ AY QIH QQQ
Sbjct: 5 GQSSAMNYGSNPYQTNAM------------------TTTPTGSD----HPAYHQIHQQQQ 42
Query: 77 QQLQQQLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACE 136
QQL QQLQSFW Q++EIEK DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACE
Sbjct: 43 QQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACE 102
Query: 137 MFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRG 196
MFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL +
Sbjct: 103 MFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAE 162
Query: 197 TLPVGGPPDMPPYCYMPTQHASQVGSAGLIMGKPVMDPAIYAQQSHPYMGQQMWPQGADQ 256
G PY Y+P A +G+ G++MG P P +PYMGQ MW Q +
Sbjct: 163 AATAAG----YPYGYLPPGTAP-IGNPGMVMGNPGAYP------PNPYMGQPMWQQPGPE 211
Query: 257 QQSPSD 262
QQ P +
Sbjct: 212 QQDPDN 217
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 210 bits (535), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/169 (66%), Positives = 131/169 (77%), Gaps = 5/169 (2%)
Query: 72 HHQQQQQLQQQLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIF 131
+H QQ QQQLQ FW Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++F
Sbjct: 33 YHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILF 92
Query: 132 ARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLA 191
A+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE A
Sbjct: 93 AKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE--A 150
Query: 192 SIPRGTLPVGGPPDMPPYCYMPTQHASQVGSAGLIMGKPVMDP-AIYAQ 239
++ G + V PY Y P + G G+++G+P MDP +Y Q
Sbjct: 151 AVLGGGMVVAPTASGVPYYYPPMGQPA--GPGGMMIGRPAMDPNGVYVQ 197
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/132 (76%), Positives = 114/132 (86%), Gaps = 7/132 (5%)
Query: 83 LQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILEL 142
LQ FWANQ QEIE DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFA+ACEMFILEL
Sbjct: 55 LQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILEL 114
Query: 143 TLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLP--V 200
TLR+W HTEENKRRTLQKNDIAAAI+RTD+FDFLVDI+PR++LK+E L + +GT+P V
Sbjct: 115 TLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG-VTKGTIPSVV 173
Query: 201 GGPPDMPPYCYM 212
G PPY Y+
Sbjct: 174 GS----PPYYYL 181
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 207 bits (526), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 125/211 (59%), Positives = 144/211 (68%), Gaps = 28/211 (13%)
Query: 40 PGPAVTSV-----GAIQSTSQPGGAQLAQHQLAYQQIHHQQQQQLQQQLQSFWANQYQEI 94
PG AVT+V S GGA +H QQ QQQLQ FW Q QEI
Sbjct: 20 PGSAVTTVIPPPPSGSASIVTGGGAT-----------YHHLLQQQQQQLQMFWTYQRQEI 68
Query: 95 EKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENK 154
E+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENK
Sbjct: 69 EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 128
Query: 155 RRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLPVGGPPDMP-----PY 209
RRTLQKNDIAAAITRTDIFDFLVDIVPRE++K+E A+ G GG P PY
Sbjct: 129 RRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALG----GGGMVAPAASGVPY 184
Query: 210 CYMPTQHASQVGSAGLIMGKPVMDPA-IYAQ 239
Y P + G G+++G+P MDP+ +YAQ
Sbjct: 185 YYPPMGQPAVPG--GMMIGRPAMDPSGVYAQ 213
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 80 QQQLQSFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
QQ LQSFW +EI V DF+ LPLARIKKIMK DEDV+MISAEAPV+FA+A ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 186
FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 80 QQQLQSFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
QQ LQSFW +EI V DF+ LPLARIKKIMK DEDV+MISAEAPV+FA+A ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 186
FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 80 QQQLQSFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
QQ LQSFW +EI V DF+ LPLARIKKIMK DEDV+MISAEAPV+FA+A ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 186
FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 80 QQQLQSFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
QQ LQSFW +EI V DF+ LPLARIKKIMK DEDV+MISAEAPV+FA+A ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 186
FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/109 (68%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 80 QQQLQSFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
QQ LQSFW +EI V DF+ LPLARIKKIMK DEDV+MISAEAPV+FA+A ++
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 186
FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 97/132 (73%), Gaps = 9/132 (6%)
Query: 55 QPGGAQLAQHQLAYQQIHHQQQQQLQQQLQSFWANQYQEIEKVNDFKNHSLPLARIKKIM 114
Q G+ Q+QL Q L+ +L SFW++Q ++I K DFK H LPLARIKKIM
Sbjct: 230 QSNGSSSFQNQL---------QNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIM 280
Query: 115 KADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFD 174
K+D+DV IS+EAP++FA+ACE+ ILE+T RSW HTE NKRRTLQ+ DI +++R + FD
Sbjct: 281 KSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFD 340
Query: 175 FLVDIVPREDLK 186
FL+D++PR+++K
Sbjct: 341 FLIDMLPRDEIK 352
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 112/177 (63%), Gaps = 30/177 (16%)
Query: 82 QLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILE 141
QL+++W Q +E V+DFKN LPLARIKKIMKAD DV M+SAEAP+IFA+ACEMFI++
Sbjct: 35 QLRNYWIEQ---METVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVD 91
Query: 142 LTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTL--- 198
LT+RSW EENKR TLQK+DI+ A+ + +DFL+D+VP KDE +A+ G +
Sbjct: 92 LTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVP----KDESIATADPGFVAMP 147
Query: 199 -PVGGPPDMPPYCYMPTQHASQVGSAGLIMGKPVMDPAIYAQQSHPYMGQQMWPQGA 254
P GG +P Y Y P G++MG P++ +YA Q WP A
Sbjct: 148 HPDGG--GVPQYYYPP----------GVVMGTPMVGSGMYAP-------SQAWPAAA 185
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 81/108 (75%), Gaps = 8/108 (7%)
Query: 86 FWANQYQEIEKVN--------DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
+W EIE N DFK+HSLP ARI+K+MK DEDV+MISAEAP+IFA+ACE+
Sbjct: 133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEI 192
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 185
FI ELT+R+W E NKRRTLQK DIA A+ ++D+FDFL+D+VPR L
Sbjct: 193 FITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPRRPL 240
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana
GN=NFYC8 PE=2 SV=1
Length = 187
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 108/179 (60%), Gaps = 36/179 (20%)
Query: 80 QQQLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFI 139
+QL+SFW+ +E+E DFKNH LP+ RIKKIMK D DV MI++EAP++ ++ACEMFI
Sbjct: 15 NEQLKSFWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFI 71
Query: 140 LELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI---VPREDLKDEVLASIPRG 196
++LT+RSW H +E+KR TLQK+++ AA+ +T IFDFL+D V RE S+
Sbjct: 72 MDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLDDDIEVKRE--------SVAAA 123
Query: 197 TLPVGGPP----DMPPYCYMPTQHASQVGSAGLIMGKPVMDPAIYAQQSHPYMGQQMWP 251
PV PP ++PP G+++G PV ++ Q P M Q WP
Sbjct: 124 ADPVAMPPIDDGELPP---------------GMVIGTPVC-CSLGIHQPQPQM--QAWP 164
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 89/122 (72%), Gaps = 3/122 (2%)
Query: 73 HQQQQQLQQQLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFA 132
HQQ + +QL+SFW+ + +E + KNH P++RIK+IMK D DV MI+AEAP + +
Sbjct: 8 HQQPPKDNEQLKSFWS---KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLS 64
Query: 133 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLAS 192
+ACEMF+++LT+RSW H +E+ R T++K+D+ A +++T IFDFL D VP+++ + V A+
Sbjct: 65 KACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKDEGEPVVAAA 124
Query: 193 IP 194
P
Sbjct: 125 DP 126
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
Query: 81 QQLQSFWANQYQEIEKVND-FKNHSLPLARIKKIMKADEDVR--MISAEAPVIFARACEM 137
Q L +W +E + K LPLARIKK+MK D+DV+ MISAEAP +FA+ E+
Sbjct: 84 QALAEYWQKTIDTLEHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEI 143
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLAS 192
FI ELT+R+W H ++N+RRTLQ++DIA A+++++++DFL+DI+ +++ +S
Sbjct: 144 FIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISKDNNNSRASSS 198
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 77/108 (71%), Gaps = 9/108 (8%)
Query: 82 QLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILE 141
Q++++W Q + D K+H+ PL RIKKIMK++ +V M++AEAPV+ ++ACEM IL+
Sbjct: 44 QMRNYWIAQ---MGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILD 100
Query: 142 LTLRSWNHTEENKRRTLQ------KNDIAAAITRTDIFDFLVDIVPRE 183
LT+RSW HT E R+TL+ ++DI+AA TR+ F FL D+VPR+
Sbjct: 101 LTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRD 148
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 71/104 (68%), Gaps = 4/104 (3%)
Query: 79 LQQQLQSFWANQYQEIEKVNDFKNHS-LPLARIKKIMKADEDVRMISAEAPVIFARACEM 137
L L+ FW NQ E++ +F + LPL+R++KI+K+D +V+ IS + P +F++ACE
Sbjct: 44 LDTALKVFWNNQR---EQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEY 100
Query: 138 FILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 181
FILE+TLR+W HT+ R T+++ DI A+ + +DFL+D VP
Sbjct: 101 FILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 164
LPLAR+K ++KAD DV + EA I ARA E+F+ + ++ ++ KR+TLQ+ D+
Sbjct: 42 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLD 101
Query: 165 AAITRTDIFDFL 176
AI D F FL
Sbjct: 102 NAIEAVDEFAFL 113
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 88 ANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSW 147
A+Q Q V + LPLAR+K ++KAD DV + EA I ARA E+F+ + ++
Sbjct: 24 ASQPQAPTSVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAY 83
Query: 148 NHTEENKRRTLQKNDIAAAITRTDIFDFL 176
++ KR+TLQ+ D+ AI D F FL
Sbjct: 84 CCAQQGKRKTLQRRDLDNAIEAVDEFAFL 112
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 164
LPLAR+K ++KAD DV + EA I ARA E+F+ + ++ ++ KR+TLQ+ D+
Sbjct: 40 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLD 99
Query: 165 AAITRTDIFDFL 176
AI D F FL
Sbjct: 100 NAIEAVDEFAFL 111
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%)
Query: 95 EKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENK 154
EK D + SLPL+RI+ IMK+ +V I+ EA V+ A+A E+F+ L S+ H
Sbjct: 9 EKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKA 68
Query: 155 RRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVL 190
++ L +D+A+ ++ FL DI+P++ L + L
Sbjct: 69 KKALTYSDLASTAEDSETLQFLADILPKKILASKYL 104
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 104 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 163
SLPL+RI+ IMK+ +V I+ EA V+ A+A E+F+ L S+ H +++ L +D+
Sbjct: 18 SLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDL 77
Query: 164 AAAITRTDIFDFLVDIVPREDLKDEVL 190
A +++ F FL DI+P++ L + L
Sbjct: 78 ANTAQQSETFQFLADILPKKILASKYL 104
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 164
P+ARIKKIM+ DE+V I++ P++ ++ E+F+ +L +++ T+ K + + N +
Sbjct: 9 FPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHLK 68
Query: 165 AAITRTDIFDFLVDIVPR 182
I + FDFL +IV R
Sbjct: 69 ECIKQESTFDFLTEIVDR 86
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 161
N P ARIKKIM+ DE++ ++A PVI +RA E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 162 DIAAAITRTDIFDFLVDIV 180
+ I FDFL D+V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 161
N P ARIKKIM+ DE++ ++A PVI +RA E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 162 DIAAAITRTDIFDFLVDIV 180
+ I FDFL D+V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
Length = 205
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 161
N P ARIKKIM+ DE++ ++A PVI +RA E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 162 DIAAAITRTDIFDFLVDIV 180
+ I FDFL D+V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 161
N P ARIKKIM+ DE++ ++A PVI +RA E+F+ L ++ T+ +T+ +
Sbjct: 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTS 68
Query: 162 DIAAAITRTDIFDFLVDIV 180
+ I FDFL D+V
Sbjct: 69 HLKQCIELEQQFDFLKDLV 87
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 164
LPL+R+K+I+K DEDV S + ++ + A E+F+ +L ++ + KR+ ++ D+
Sbjct: 10 LPLSRVKRIIKQDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDVE 69
Query: 165 AAITRTDIFDFLVDI 179
+ + D F+FL D+
Sbjct: 70 DVVRKDDQFEFLSDL 84
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 164
P+ARIKKIM+AD+DV ++ PVI ++A E+F+ + S T ++ + + + +
Sbjct: 24 FPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHLK 83
Query: 165 AAITRTDIFDFLVDIVPR 182
A+ + FDFL DIV +
Sbjct: 84 HAVQSVEQFDFLQDIVEK 101
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB3 PE=3 SV=1
Length = 114
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 95 EKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENK 154
EK + K P+ARIKK+M++D+D+ ++ P A+A E+F++ L + N
Sbjct: 3 EKPREIKTR-FPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRN 61
Query: 155 RRTLQKNDIAAAITRTDIFDFLVDIVPR 182
+ + + + A+ T+ FDFL DIV +
Sbjct: 62 SKRVSPSHLKQAVLETEQFDFLQDIVSK 89
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 104 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 163
SLPL++IKKI K D D S A A E+FI T +S + +KR+ LQ D
Sbjct: 91 SLPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKDF 150
Query: 164 AAAITRTDIFDFLVDIVPR 182
+ A+ D +FL D VP+
Sbjct: 151 SNAVASQDSLNFLSDTVPK 169
>sp|P40096|NCB1_YEAST Negative cofactor 2 complex subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1
SV=1
Length = 142
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 93 EIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEE 152
E+ V D P A++KKIM+ DED+ +S PVI R+ E FI L +S
Sbjct: 41 ELGDVFDRIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARG 100
Query: 153 NKRRTLQKNDIAAAITRTDIFDFL 176
+ + + I + FDFL
Sbjct: 101 QGTKRITAEILKKTILNDEKFDFL 124
>sp|Q6CLM5|DPB3_KLULA DNA polymerase epsilon subunit C OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB3 PE=3 SV=1
Length = 166
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKR-RTLQKN-- 161
+P+++ KKI + D + + S A A E+FI L + + + +K+ +TL+ N
Sbjct: 11 IPISKCKKIARTDPEYILTSQAAFAATAFTTELFIQMLAEETCSLAQIHKQTKTLRLNYE 70
Query: 162 DIAAAITRTDIFDFLVDIVPREDLKDEVLASIPR 195
D++ AI D F FL D+VP + E LAS+ R
Sbjct: 71 DLSTAIRNLDKFQFLSDVVP----QTENLASLVR 100
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 104 SLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKND 162
+LP A I +I+K A D IS EA +RA +F+L T + N + KR+TL +D
Sbjct: 9 NLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASD 68
Query: 163 IAAAITRTDIFDFLV 177
+ +A+ + F+
Sbjct: 69 VLSAMEEMEFQRFIT 83
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 104 SLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKND 162
+LP A I +I+K A D IS EA +RA +F+L T + N + KR+TL +D
Sbjct: 9 NLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASD 68
Query: 163 IAAAITRTDIFDFLV 177
+ +A+ + F+
Sbjct: 69 VLSAMEEMEFQRFVT 83
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 104 SLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKND 162
+LP A I +I+K A D IS EA +RA +F+L T + N + KR+TL +D
Sbjct: 9 NLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASD 68
Query: 163 IAAAITRTDIFDFLV 177
+ +A+ + F+
Sbjct: 69 VLSAMEEMEFQRFVT 83
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 104 SLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKND 162
+LP A I +I+K A D IS EA +RA +F+L T + N + KR+TL +D
Sbjct: 9 NLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASD 68
Query: 163 IAAAITRTDIFDFLV 177
+ +A+ + F+
Sbjct: 69 VLSAMEEMEFQRFVT 83
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 104 SLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKND 162
+LP A I +I+K A D IS EA +RA +F+L T + N + KR+TL +D
Sbjct: 9 NLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASD 68
Query: 163 IAAAITRTDIFDFLV 177
+ +A+ + F+
Sbjct: 69 VLSAMEEMEFQRFVT 83
>sp|P40366|DLS1_YEAST Protein DLS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DLS1 PE=1 SV=1
Length = 167
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 105 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEEN---------KR 155
LP+ ++++I K D + S +A V A A E F+ LT S + ++
Sbjct: 20 LPVEKVQRIAKNDPEYMDTSDDAFVATAFATEFFVQVLTHESLHRQQQQQQQQVPPLPDE 79
Query: 156 RTLQKNDIAAAITRTDI--FDFLVDIVP 181
TL +DI+AAI + FL D++P
Sbjct: 80 LTLSYDDISAAIVHSSDGHLQFLNDVIP 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,407,608
Number of Sequences: 539616
Number of extensions: 4760944
Number of successful extensions: 35975
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 23438
Number of HSP's gapped (non-prelim): 7615
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)